195 lines
14 KiB
XML
195 lines
14 KiB
XML
<document id="394A1190F3CCB4CB3E0B3C1859596DEA" ID-DOI="10.3897/mycokeys.107.125549" ID-publisher-id="125549" URI-arpha="3EA0E723-E6FC-58B0-8491-ED4CC2FBAB87" XM.bibliography_approvedBy="admin" XM.materialsCitations_approvedBy="admin" XM.taxonomicNames_approvedBy="admin" XM.treatmentCitations_approvedBy="admin" XM.treatments_approvedBy="admin" article-type="research-article" checkinTime="1723223129036" checkinUser="pensoft" docAuthor="Tedersoo, Leho, Magurno, Franco, Alkahtani, Saad & Mikryukov, Vladimir" docDate="2024" docId="A2004B52C41B510F93D814C7C8D1AD94" docLanguage="en" docName="MycoKeys 107: 249-271" docOrigin="MycoKeys 107" docSource="https://mycokeys.pensoft.net/article/125549/download/xml/" docStyle="DocumentStyle:PensoftTaxPub.0000.journal_article.mycokeys" docStyleName="PensoftTaxPub.0000.journal_article.mycokeys" docTitle="Nikkaluokta mahdiehiae Tedersoo 2024, sp. nov." docType="treatment" docVersion="3" dtd-version="3.0" lastPageNumber="271" masterDocId="3EA0E723E6FC58B08491ED4CC2FBAB87" masterDocTitle="Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes)" masterLastPageNumber="271" masterPageNumber="249" pageNumber="249" updateTime="1723229325626" updateUser="admin">
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<mods:mods id="16CAB1C089F1774C254D823B485CBA36" xmlns:mods="http://www.loc.gov/mods/v3">
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<mods:titleInfo id="E0B9748220400AB27B2E8CB064DF0029">
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<mods:title id="D22585575BC93EDF77A3E26CB9B0EC1B">Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes)</mods:title>
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</mods:titleInfo>
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<mods:name id="7C596FD59BD45E8C737184720F83F065" type="personal">
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<mods:role id="57DA85908D3A898690BB8A0195CE2CE8">
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<mods:roleTerm id="6895DFE8B95467474DDDA0C908082C7A">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="25B4752348C45EB7AEEC779645EEADFB">Tedersoo, Leho</mods:namePart>
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<mods:affiliation id="566CA0183C2E9FA62AE0D5C49544ADD7">Mycology and Microbiology Center, University of Tartu, 2 Liivi, 50409 Tartu, Estonia & Department of Zoology, College of Science, King Saud University, 12371 Riyadh, Saudi Arabia</mods:affiliation>
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</mods:name>
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<mods:name id="A6705203EFDD7CF86E993E424AEBFAF9" type="personal">
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<mods:role id="ADC8C64C7AE0D08F553F610DC847406E">
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<mods:roleTerm id="0941F8625D3F64612AB04A5791559334">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="E9C04BF1FC23A65E69FD32C9BEE34208">Magurno, Franco</mods:namePart>
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<mods:nameIdentifier id="3218CFFD9E363EFBAF3010A037C1DB26" type="ORCID">0000-0002-3117-8149</mods:nameIdentifier>
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<mods:affiliation id="D43845CFF58B7C9880CE8D7AEAF71A3D">Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice, Jagiellońska 28, 40 - 032 Katowice, Poland</mods:affiliation>
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</mods:name>
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<mods:name id="9FD09CA5C7CFE809EAD4D12BBC42B724" type="personal">
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<mods:role id="1DC9E391F099C104A22AA5E7F366DC08">
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<mods:roleTerm id="6522CB0FCD0D93348CC2D690C620601E">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="0F0DB01B1B438F2D17E44C0803C0C20C">Alkahtani, Saad</mods:namePart>
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<mods:nameIdentifier id="9175D2EE7B07D497BB575AC000B8439B" type="ORCID">0000-0001-7381-5110</mods:nameIdentifier>
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<mods:affiliation id="502DCB9E08F265396567E5F69FA57670">Department of Zoology, College of Science, King Saud University, 12371 Riyadh, Saudi Arabia</mods:affiliation>
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</mods:name>
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<mods:name id="A67C8744FFFD0AB651067A55BC9EFFC4" type="personal">
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<mods:roleTerm id="F7AF6E07A2626B534C47DF674BE6CCA2">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="B25993BC774045CAC38E23F8B70F2969">Mikryukov, Vladimir</mods:namePart>
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<mods:nameIdentifier id="108F77F98CDA34275FA10CE94EA9E374" type="ORCID">0000-0003-2786-2690</mods:nameIdentifier>
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<mods:affiliation id="C27C52C32D0F4D28A2CE4584F85EE7DC">Mycology and Microbiology Center, University of Tartu, 2 Liivi, 50409 Tartu, Estonia</mods:affiliation>
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<mods:typeOfResource id="7EC5B1D3D42CC085CEBE738364B8B536">text</mods:typeOfResource>
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<mods:titleInfo id="9D14C7A91C2384DC059FB8F6F98A0140">
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<mods:title id="D2A2E3B9EB74E649E643D610D08EAE51">MycoKeys</mods:title>
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</mods:titleInfo>
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<mods:part id="3C1B739C806D311C96D9DB001F591D10">
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<mods:date id="7356783EE744EB7CB78359C355E35886">2024</mods:date>
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<mods:detail id="45F230C5A6657B028DEF16C5AE74FE37" type="pubDate">
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<mods:number id="D57A61CFDDDE713122F4635FED1E3BAE">2024-08-09</mods:number>
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</mods:detail>
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<mods:detail id="B990CB6B1CD4514A42B6BDBF1DC4D766" type="volume">
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<mods:number id="4862241C59E56B1E2F41DF906247B8D4">107</mods:number>
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</mods:detail>
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<mods:extent id="9B15A7806EA878BC1ADA612EC98A59A4" unit="page">
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<mods:start id="3D05C76291A9C71A2C835B44B77D0850">249</mods:start>
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<mods:end id="B5D7D6568D9ED429E66AFD0F9D4AEAA9">271</mods:end>
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</mods:extent>
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</mods:part>
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<mods:classification id="47DE9326DFA676E34337E1BDA05D3D0F">journal article</mods:classification>
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<mods:identifier id="4D4D54A679DAD844C4800B9055ED6153" type="DOI">10.3897/mycokeys.107.125549</mods:identifier>
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</mods:mods>
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<treatment id="A2004B52C41B510F93D814C7C8D1AD94" ID-DOI="http://doi.org/10.5281/zenodo.13286547" ID-Zenodo-Dep="13286547" ID-arpha="A2004B52-C41B-510F-93D8-14C7C8D1AD94" ID-mycobank="853607" LSID="urn:lsid:plazi:treatment:A2004B52C41B510F93D814C7C8D1AD94" httpUri="http://treatment.plazi.org/id/A2004B52C41B510F93D814C7C8D1AD94">
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<subSubSection id="EB7C6E3040E09DD04A3A55517CA3888D" type="nomenclature">
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<paragraph id="9E2078B8BA5BA6CFB3BA0985267039B0">
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<taxonomicName id="88478CF59D67A375349E4342A309A2C8" authority="Tedersoo" authorityName="Tedersoo" authorityYear="2024" class="Magnoliopsida" family="Nikkaluoktaceae" genus="Nikkaluokta" kingdom="Fungi" order="Nikkaluoktales" phylum="Tracheophyta" rank="species" species="mahdiehiae" status="sp. nov.">
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<emphasis id="1F197BA4F55ECF6E361868F31F837467" italics="true">Nikkaluokta mahdiehiae</emphasis>
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Tedersoo
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</taxonomicName>
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<taxonomicNameLabel id="926A2DD249F9CF580EC5BD059D9DC135" rank="species">sp. nov.</taxonomicNameLabel>
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</paragraph>
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</subSubSection>
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<subSubSection id="SECID0EB6AK" type="diagnosis">
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<paragraph id="2B25B753AFD1C21B5B642C61E98A0C5E">
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<heading id="6CB2E13A44D235568695AF5B823C48A2" reason="title">Diagnosis.</heading>
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</paragraph>
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<paragraph id="A4BE06BAEC504B745AD83D0E3EE0F8D3">
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Separation from other species of
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<taxonomicName id="F666D2AC5663ED73AFCD55A6823FFC53" class="Magnoliopsida" family="Dipterocarpaceae" genus="Nikkaluokta" kingdom="Plantae" order="Malvales" phylum="Tracheophyta" rank="genus">
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<emphasis id="84ECE6A050CC20018ADAC7C15520D95D" italics="true">Nikkaluokta</emphasis>
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</taxonomicName>
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based on the
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<abbrev id="ABBRID0EO6AK" xlink_title="internal transcribed spacer">ITS</abbrev>
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region (positions 97–116 cctgggcaaatttttttttc; one mismatch allowed) and LSU (positions 687–717 cttggatataagaagtggaatctacacaaat; one mismatch allowed) as indicated in Fig.
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<figureCitation id="C5611A696132A7B780D58CDF1E73A18B" captionStart="Figure 12" captionStartId="F12" captionText="Figure 12. Diagnostic barcodes for Nikkaluokta mahdiehiae relative to closely-related taxa in ITS 2 and LSU." figureDoi="10.3897/mycokeys.107.125549.figure12" httpUri="https://binary.pensoft.net/fig/1111399">12</figureCitation>
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.
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</paragraph>
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<caption id="6F9FDA643B67E57C0D6F3F79C194FA43" ID-DOI="10.3897/mycokeys.107.125549.figure12" ID-arpha="D32F518B-D212-5133-B380-C08361B747DF" httpUri="https://binary.pensoft.net/fig/1111399" startId="F12">
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<paragraph id="8ED876E58F25CFD3D7E78CE66D67CF94">
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<label id="DC400A1F9D55FD06CF3122979A10AF77">Figure 12.</label>
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</paragraph>
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<paragraph id="56034D65812655CBFB90E8943489127C">
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Diagnostic barcodes for
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<taxonomicName id="BB802A3778F9F99D9718B2DFB05496D0" class="Magnoliopsida" family="Dipterocarpaceae" genus="Nikkaluokta" kingdom="Plantae" order="Malvales" phylum="Tracheophyta" rank="species" species="mahdiehiae">
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<emphasis id="B016BE890907F5D41A2482A2A156C950" italics="true">Nikkaluokta mahdiehiae</emphasis>
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</taxonomicName>
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relative to closely-related taxa in ITS 2 and LSU.
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</paragraph>
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</caption>
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</subSubSection>
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<subSubSection id="SECID0EOABK" type="material">
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<paragraph id="DE7AEC92818C0FD6BC83ADB179EA109B">
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<heading id="A3F9E52810919EA83763BE23F2E37351" reason="title">Type.</heading>
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</paragraph>
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<paragraph id="BC54AF9D06C8DC80A63B266D1F4F1198">
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<materialsCitation id="6295F223E53950F2D6791B8E176D3B45" collectedFrom="subarctic Pinus sylvestris forest" collectionCode="TUE, EUK" country="Sweden" latitude="67.85596" location="Nikkaluokta" longLatPrecision="1" longitude="19.47575" specimenCode="TUE 100497, EUK 1203196, TUE 000497" specimenCount="2" typeStatus="holotype">
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Soil
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<abbrev id="ABBRID0EUABK" xlink_title="environmental DNA">eDNA</abbrev>
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sample
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<specimenCode id="A168A83EBC461321E40084DEEA6C783C">TUE 100497</specimenCode>
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(
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<emphasis id="0021948938C66AD147F346CD0B46FB31" bold="true" italics="true">
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<typeStatus id="8C890F310A9FB37062E1E932A640B16B" type="holotype">holotype</typeStatus>
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</emphasis>
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);
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<abbrev id="ABBRID0E2ABK" xlink_title="environmental DNA">eDNA</abbrev>
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sequence
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<specimenCode id="BA8AAE252B0202D2D04A3FFE9868B380">EUK 1203196</specimenCode>
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(
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<emphasis id="695EBC260C8B224D9BA914F6E658E909" bold="true" italics="true">
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<typeStatus id="ADC15C7796672BC1A93FD29E4EC14974" type="lectotype">lectotype</typeStatus>
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</emphasis>
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);
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<collectedFrom id="3A027E0B206A60B6A58F98C6A1CD69B8">
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subarctic
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<taxonomicName id="34B0F65325E7ABA7D1EAD4668A27BD7E" class="Pinopsida" family="Pinaceae" genus="Pinus" kingdom="Plantae" order="Pinales" phylum="Tracheophyta" rank="species" species="sylvestris">
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<emphasis id="B903075548DD7311EE4F50C199A1454A" italics="true">Pinus sylvestris</emphasis>
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</taxonomicName>
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forest
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</collectedFrom>
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(soil sample
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<specimenCode id="1CB9D44651415CD27973F38D9DAD16D8">TUE 000497</specimenCode>
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) in
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<taxonomicName id="3F2F9A823ED630DF0CEA0C74930031DE" class="Magnoliopsida" family="Dipterocarpaceae" genus="Nikkaluokta" kingdom="Plantae" order="Malvales" phylum="Tracheophyta" rank="genus">
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<emphasis id="65C14AE61AA645BDD16B4699306D62BC" italics="true">
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<location id="AAE951E12B0F8D874E13CB0DAB3E64AA" LSID="urn:lsid:plazi:treatment:A2004B52C41B510F93D814C7C8D1AD94:AAE951E12B0F8D874E13CB0DAB3E64AA" country="Sweden" latitude="67.85596" longLatPrecision="1" longitude="19.47575" name="Nikkaluokta">Nikkaluokta</location>
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</emphasis>
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</taxonomicName>
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,
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<collectingCountry id="87BEA8814AD543F59EEC9FD097D676EB" name="Sweden">Sweden</collectingCountry>
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,
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<named-content content-type="dwc:verbatimCoordinates" id="NCID0EWBBK" specific-use="{"type":"Point","coordinates":[19.475750,67.855960]}">
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<geoCoordinate id="9769CDBCDBBDEEE5EF30BD7EF28B9BA2" degrees="67.85596" direction="north" orientation="latitude" precision="1" value="67.85596">67.85596 ° N</geoCoordinate>
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,
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<geoCoordinate id="6CC7EB48E4BE9EDE68CD2E242A095761" degrees="19.47575" direction="east" orientation="longitude" precision="1" value="19.47575">19.47575 ° E</geoCoordinate>
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</named-content>
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</materialsCitation>
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.
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</paragraph>
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</subSubSection>
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<subSubSection id="SECID0E2BBK" type="description">
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<paragraph id="D97922625A852AF11682176E5E1A58AF">
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<heading id="F42DEF9BC35323D2DB7856C3B00DB9C0" reason="title">Description.</heading>
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</paragraph>
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<paragraph id="1D80B1582C6BA16FB6C92A41C7D2B5C8">
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Other sequences: EUK 1203537 (type locality) and EUK 1603797 (
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<abbrev id="ABBRID0EBCBK" xlink_title="Global Soil Mycobiome consortium">GSMc</abbrev>
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plot G 5003,
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<taxonomicName id="74FC2651A1E1E6F72A9049AE116C7AB7" class="Pinopsida" family="Pinaceae" genus="Pinus" kingdom="Plantae" order="Pinales" phylum="Tracheophyta" rank="species" species="sylvestris">
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<emphasis id="C1BE41942BECC931F442E7DDF1BB3070" italics="true">Pinus sylvestris</emphasis>
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</taxonomicName>
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forest soil in Naissaare,
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<collectingCountry id="8D8EC57FE7D78F89A1F793FCB4BEF49C" name="Estonia">Estonia</collectingCountry>
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,
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<named-content content-type="dwc:verbatimCoordinates" id="NCID0ETCBK" specific-use="{"type":"Point","coordinates":[24.545100,59.563400]}">
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<geoCoordinate id="92A974458237AC22B10411C4CA2D09D9" degrees="59.56340" direction="north" orientation="latitude" precision="1" value="59.5634">59.56340 ° N</geoCoordinate>
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,
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<geoCoordinate id="7867DAD1F375DA683C9F45397A4487FE" degrees="24.54510" direction="east" orientation="longitude" precision="1" value="24.5451">24.54510 ° E</geoCoordinate>
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</named-content>
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).
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</paragraph>
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</subSubSection>
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<subSubSection id="SECID0EYCBK" type="etymology">
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<paragraph id="369BA5F56D6D2547FA6880AF1E93E53F">
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<heading id="43F917345684B407A05B5F9A6BB9D066" reason="title">Etymology.</heading>
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</paragraph>
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<paragraph id="65D8B02E402EEB87D30FC4AAB64A1F57">
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<emphasis id="64FFCC88FAE132288F965A5ABB30B4DF" italics="true">Nikkaluokta</emphasis>
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(Sami) refers to type locality; and
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<emphasis id="C0E6844406A8C3228B9F6C82A70064A6" italics="true">Mahdieh</emphasis>
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(Persian) refers to the first name of Mahdieh Hosseyni Moghaddam who sequenced the type materials using target capture protocols.
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</paragraph>
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</subSubSection>
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<subSubSection id="SECID0ESDBK" type="notes">
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<paragraph id="31510FBE49265F8C438D2729BE276B15">
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<heading id="AB7EB1B33FE80D3ADF84586F3AD28111" reason="title">Notes.</heading>
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</paragraph>
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<paragraph id="1905865861DB8C3CA66E2895860E8330">
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Found in
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<collectingCountry id="50CEB6D11BC0DEB87EA2960AADE2B1FC" name="Sweden">Sweden</collectingCountry>
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and
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<collectingCountry id="481E320C85965CAE310D8148430A30B3" name="Estonia">Estonia</collectingCountry>
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, with
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<abbrev id="ABBRID0EYDBK" xlink_title="internal transcribed spacer">ITS</abbrev>
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and LSU sequences displaying up to 1 % and 0.2 % differences, respectively.
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</paragraph>
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</subSubSection>
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</treatment>
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</document> |