262 lines
24 KiB
XML
262 lines
24 KiB
XML
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<mods:title id="7D0E35F7131B737D83E59C2BBA1C0CEA">Phylogenomics of Characidae, a hyper-diverse Neotropical freshwater fish lineage, with a phylogenetic classification including four families (Teleostei: Characiformes)</mods:title>
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<mods:namePart id="A79A10F5A951EDE118D6665FCB842715">Ota, Rafaela P</mods:namePart>
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<mods:namePart id="2C115424B3E65FCD784415B23998ECDA">Lima, Flavio C T</mods:namePart>
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<mods:namePart id="11FDCEA8BEC5BCAAC462B2F538ACF5AE">Mattox, George M T</mods:namePart>
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<mods:namePart id="4C5C69B9A2AC90F5659489FE06F9AC90">Souza, Camila S</mods:namePart>
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<mods:namePart id="925043276380FDF09213E6C57EBAF460">Faria, Tiago C</mods:namePart>
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<mods:namePart id="F63308323147B5782739BCB63FF90F5E">Near, Thomas J</mods:namePart>
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<mods:namePart id="E3751B030C208C94D8E41C68CA01DFDE">Oliveira, Claudio</mods:namePart>
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<mods:title id="88211966751FF8765E605F7C703F09E0">Zoological Journal of the Linnean Society</mods:title>
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<mods:date id="1F539B18B795BB4510A20799EADABA55">2024</mods:date>
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<mods:title id="823B2C886137FF60EB565245FBAE2607">Zool. J. Linn. Soc.</mods:title>
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<mods:number id="A032B298404344678C62CD8880A3C931">2024-09-03</mods:number>
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<taxonomicName id="4C0A79D56E73EF331A5FFB9D0DDAFB7E" authority="Melo and Oliveira" authorityName="Melo and Oliveira" box="[893,1244,1139,1166]" pageId="8" pageNumber="9" rank="subFamily" subFamily="Argopleurinae">Argopleurinae Melo and Oliveira</taxonomicName>
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, new subfamilp
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urn:lsid:zoobank.org:act:
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.
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genus:
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<taxonomicName id="4C0A79D56E73EF331A92FAE30DD0FAD6" authority="Eigenmann, 1913" authorityName="Eigenmann" authorityYear="1913" box="[944,1238,1293,1317]" family="Characidae" genus="Argopleura" kingdom="Animalia" order="Characiformes" pageId="8" pageNumber="9" phylum="Chordata" rank="genus">
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<emphasis id="B97EDE446E73EF331A92FAE30D1AFAD6" box="[944,1052,1293,1317]" italics="true" pageId="8" pageNumber="9">Argopleura</emphasis>
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Eigenmann, 1913
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.
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<emphasis id="B97EDE446E73EF331A1BFAA80D41FAAD" box="[825,1095,1350,1374]" italics="true" pageId="8" pageNumber="9">
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Included genus:
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<taxonomicName id="4C0A79D56E73EF331AF6FAA80D45FAAD" authorityName="Eigenmann" authorityYear="1913" box="[980,1091,1350,1374]" family="Characidae" genus="Argopleura" kingdom="Animalia" order="Characiformes" pageId="8" pageNumber="9" phylum="Chordata" rank="genus">Argopleura</taxonomicName>
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.
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<emphasis id="B97EDE446E73EF331A1BFA910AA4FA64" box="[825,930,1407,1431]" italics="true" pageId="8" pageNumber="9">Definition:</emphasis>
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The least inclusive crown clade that contains
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<taxonomicName id="4C0A79D56E73EF331A1BFA710DE2FA44" authority="(Eigenmann, 1913)" baseAuthorityName="Eigenmann" baseAuthorityYear="1913" box="[825,1252,1439,1463]" family="Characidae" genus="Argopleura" kingdom="Animalia" order="Characiformes" pageId="8" pageNumber="9" phylum="Chordata" rank="species" species="chocoensis">
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<emphasis id="B97EDE446E73EF331A1BFA710D09FA44" box="[825,1039,1439,1463]" italics="true" pageId="8" pageNumber="9">Argopleura chocoensis</emphasis>
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(Eigenmann, 1913)
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</taxonomicName>
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,
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<taxonomicName id="4C0A79D56E73EF331DD2FA710D0EFA25" authority="(Eigenmann, 1913)" baseAuthorityName="Eigenmann" baseAuthorityYear="1913" family="Characidae" genus="Argopleura" kingdom="Animalia" order="Characiformes" pageId="8" pageNumber="9" phylum="Chordata" rank="species" species="conoentus">
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<emphasis id="B97EDE446E73EF331DD2FA710CC4FA45" box="[1264,1474,1439,1463]" italics="true" pageId="8" pageNumber="9">Argopleura conoentus</emphasis>
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(Eigenmann, 1913)
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</taxonomicName>
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,
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<taxonomicName id="4C0A79D56E73EF331D34FA500CB8FA25" authority="(Eigenmann, 1913)" baseAuthorityName="Eigenmann" baseAuthorityYear="1913" box="[1046,1470,1470,1494]" family="Characidae" genus="Argopleura" kingdom="Animalia" order="Characiformes" pageId="8" pageNumber="9" phylum="Chordata" rank="species" species="diquensis">
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<emphasis id="B97EDE446E73EF331D34FA500DE3FA25" box="[1046,1253,1470,1494]" italics="true" pageId="8" pageNumber="9">Argopleura diquensis</emphasis>
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(Eigenmann, 1913)
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</taxonomicName>
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, and
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<taxonomicName id="4C0A79D56E73EF331A4EFA330C57FA06" authority="(Eigenmann, 1913)" baseAuthorityName="Eigenmann" baseAuthorityYear="1913" box="[876,1361,1501,1525]" family="Characidae" genus="Argopleura" kingdom="Animalia" order="Characiformes" pageId="8" pageNumber="9" phylum="Chordata" rank="species" species="magdalenensis">
|
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<emphasis id="B97EDE446E73EF331A4EFA330D77FA06" box="[876,1137,1501,1525]" italics="true" pageId="8" pageNumber="9">Argopleura magdalenensis</emphasis>
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(Eigenmann, 1913)
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</taxonomicName>
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. This is a minimum-crown-clade definition. See
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<figureCitation id="13311ED36E73EF331DE9FA130C24F9E6" box="[1227,1314,1533,1557]" captionStart="Figure 3" captionStartId="6.[129,194,1842,1866]" captionTargetBox="[244,1358,150,1808]" captionTargetId="figure-6@6.[241,1361,147,1811]" captionTargetPageId="6" captionText="Figure 3. Phylogeny of Spintherobolidae and Stevardiidae and subfamilies Landoninae, Xenurobryconinae, Glandulocaudinae, Argopleurinae, Hemibryconinae, Stevardiinae, Planaltininae, Creagrutinae, and Diapominae based on 1348 nuclear loci of ultraconserved elements (538 472 bp). Numbers near nodes represent bootstrap support." pageId="8" pageNumber="9">Figure 3</figureCitation>
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for a reference phylogeny of Argopleurinae. Although
|
||
<taxonomicName id="4C0A79D56E73EF331DE4F9F20C90F9C7" baseAuthorityName="Eigenmann" baseAuthorityYear="1913" box="[1222,1430,1564,1588]" family="Characidae" genus="Argopleura" kingdom="Animalia" order="Characiformes" pageId="8" pageNumber="9" phylum="Chordata" rank="species" species="conoentus">
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<emphasis id="B97EDE446E73EF331DE4F9F20C90F9C7" box="[1222,1430,1564,1588]" italics="true" pageId="8" pageNumber="9">Argopleura conoentus</emphasis>
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</taxonomicName>
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and
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<taxonomicName id="4C0A79D56E73EF331A1BF9D50D02F9A0" baseAuthorityName="Eigenmann" baseAuthorityYear="1913" box="[825,1028,1595,1619]" family="Characidae" genus="Argopleura" kingdom="Animalia" order="Characiformes" pageId="8" pageNumber="9" phylum="Chordata" rank="species" species="diquensis">
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<emphasis id="B97EDE446E73EF331A1BF9D50D02F9A0" box="[825,1028,1595,1619]" italics="true" pageId="8" pageNumber="9">Argopleura diquensis</emphasis>
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</taxonomicName>
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are not sampled in the reference phylogeny, it is assumed that the four species of
|
||
<taxonomicName id="4C0A79D56E73EF331D9FF9B50C2FF980" authorityName="Eigenmann" authorityYear="1913" box="[1213,1321,1627,1651]" family="Characidae" genus="Argopleura" kingdom="Animalia" order="Characiformes" pageId="8" pageNumber="9" phylum="Chordata" rank="genus">
|
||
<emphasis id="B97EDE446E73EF331D9FF9B50C2FF980" box="[1213,1321,1627,1651]" italics="true" pageId="8" pageNumber="9">Argopleura</emphasis>
|
||
</taxonomicName>
|
||
form a monophyletic group (Weitzman and Fink 1985).
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="C31051DD6E73EF331A1BF95D0AB4F8F9" pageId="8" pageNumber="9" type="etymology">
|
||
<paragraph id="8BB502566E73EF331A1BF95D0AB4F8F9" blockId="8.[825,1474,1713,2009]" pageId="8" pageNumber="9">
|
||
<emphasis id="B97EDE446E73EF331A1BF95D0AAEF938" box="[825,936,1715,1739]" italics="true" pageId="8" pageNumber="9">Etymology:</emphasis>
|
||
From the ancient Greek ἀΡγός (ˈɑː͡ɹɡo͡ʊz) meaning shinning or glistening and πλευΡά (plˈoːɹə) meaning rib or side of the body.
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="C31051DD6E73EF321A1BF8CA08E0FE12" lastPageId="9" lastPageNumber="10" pageId="8" pageNumber="9" type="discussion">
|
||
<paragraph id="8BB502566E73EF331A1BF8CA0CC4F82A" blockId="8.[825,1474,1713,2009]" pageId="8" pageNumber="9">
|
||
<emphasis id="B97EDE446E73EF331A1BF8CA0A91F8CF" box="[825,919,1828,1852]" italics="true" pageId="8" pageNumber="9">Remarks:</emphasis>
|
||
Weitzman and Menezes (1998) placed
|
||
<taxonomicName id="4C0A79D56E73EF331C74F8CA0CC4F8CF" authorityName="Eigenmann" authorityYear="1913" box="[1366,1474,1828,1852]" family="Characidae" genus="Argopleura" kingdom="Animalia" order="Characiformes" pageId="8" pageNumber="9" phylum="Chordata" rank="genus">
|
||
<emphasis id="B97EDE446E73EF331C74F8CA0CC4F8CF" box="[1366,1474,1828,1852]" italics="true" pageId="8" pageNumber="9">Argopleura</emphasis>
|
||
</taxonomicName>
|
||
in
|
||
<taxonomicName id="4C0A79D56E73EF331A75F8AD0D01F8A8" box="[855,1031,1859,1883]" family="Characidae" kingdom="Animalia" order="Characiformes" pageId="8" pageNumber="9" phylum="Chordata" rank="tribe" tribe="Xenurobryconini">Xenurobryconini</taxonomicName>
|
||
but recognized that the group was based on limited and ambiguous data. According to Weitzman
|
||
<emphasis id="B97EDE446E73EF331CB2F88D0CBAF888" box="[1424,1468,1891,1915]" italics="true" pageId="8" pageNumber="9">et al</emphasis>
|
||
. (2005), a plesiomorphic pouch scale observed in
|
||
<taxonomicName id="4C0A79D56E73EF331C74F86C0CC4F869" authorityName="Eigenmann" authorityYear="1913" box="[1366,1474,1922,1946]" family="Characidae" genus="Argopleura" kingdom="Animalia" order="Characiformes" pageId="8" pageNumber="9" phylum="Chordata" rank="genus">
|
||
<emphasis id="B97EDE446E73EF331C74F86C0CC4F869" box="[1366,1474,1922,1946]" italics="true" pageId="8" pageNumber="9">Argopleura</emphasis>
|
||
</taxonomicName>
|
||
comprises what appears to be a terminal lateral-line tube, and thus it looks superficially like a scale derived from the lateral-line
|
||
</paragraph>
|
||
<paragraph id="8BB502566E72EF321953FF7E08E0FE12" blockId="9.[113,763,144,481]" pageId="9" pageNumber="10">
|
||
scale series. The authors suggested that new studies should be conducted to better understand this character.
|
||
<bibRefCitation id="EF9B7FA76E72EF321B4BFF5E09BAFF15" author="Nomaz AT & Arcila D & Orti G" pageId="9" pageNumber="10" pagination="1 - 25" refId="ref35300" refString="Nomaz AT, Arcila D, Orti G et al. Molecular phylogeny of the subfamily Stevardiinae Gill, 1858 (Characiformes: Characidae): classification and the evolution of reproductive traits. BMC Eoolutionary Biology 2015; 15: 1 - 25." type="journal article" year="2015">
|
||
Thomaz
|
||
<emphasis id="B97EDE446E72EF321BE5FF5E0BF2FF34" box="[711,756,175,199]" italics="true" pageId="9" pageNumber="10">et al</emphasis>
|
||
. (2015)
|
||
</bibRefCitation>
|
||
and Ferreira
|
||
<emphasis id="B97EDE446E72EF321861FF21086AFF14" box="[323,364,207,231]" italics="true" pageId="9" pageNumber="10">et al</emphasis>
|
||
. (2021) resolved
|
||
<taxonomicName id="4C0A79D56E72EF321B01FF210B89FF14" authorityName="Eigenmann" authorityYear="1913" box="[547,655,207,231]" family="Characidae" genus="Argopleura" kingdom="Animalia" order="Characiformes" pageId="9" pageNumber="10" phylum="Chordata" rank="genus">
|
||
<emphasis id="B97EDE446E72EF321B01FF210B89FF14" box="[547,655,207,231]" italics="true" pageId="9" pageNumber="10">Argopleura</emphasis>
|
||
</taxonomicName>
|
||
as a deepbranching lineage not closely related to other stevardiine genera and classified it as
|
||
<emphasis id="B97EDE446E72EF32180FFEE008AAFED6" box="[301,428,269,293]" italics="true" pageId="9" pageNumber="10">incertae sedis</emphasis>
|
||
in
|
||
<taxonomicName id="4C0A79D56E72EF3218E9FEE30B4DFED6" box="[459,587,269,293]" family="Characidae" kingdom="Animalia" order="Characiformes" pageId="9" pageNumber="10" phylum="Chordata" rank="subFamily" subFamily="Stevardiinae">Stevardiinae</taxonomicName>
|
||
.
|
||
<bibRefCitation id="EF9B7FA76E72EF321B71FEE30BFCFED6" author="Mirande JM" box="[595,762,269,293]" pageId="9" pageNumber="10" pagination="282 - 300" refId="ref32677" refString="Mirande JM. Morphology, molecules and the phylogeny of Characidae (Teleostei: Characiformes). Cladistics 2019; 35: 282 - 300. hups: // doi. org / 10.1111 / cla. 12345" type="journal article" year="2019">Mirande (2019)</bibRefCitation>
|
||
placed
|
||
<taxonomicName id="4C0A79D56E72EF321999FEC30821FEB6" authorityName="Eigenmann" authorityYear="1913" box="[187,295,301,325]" family="Characidae" genus="Argopleura" kingdom="Animalia" order="Characiformes" pageId="9" pageNumber="10" phylum="Chordata" rank="genus">
|
||
<emphasis id="B97EDE446E72EF321999FEC30821FEB6" box="[187,295,301,325]" italics="true" pageId="9" pageNumber="10">Argopleura</emphasis>
|
||
</taxonomicName>
|
||
within
|
||
<taxonomicName id="4C0A79D56E72EF321858FEC308EEFEB6" box="[378,488,301,325]" family="Characidae" kingdom="Animalia" order="Characiformes" pageId="9" pageNumber="10" phylum="Chordata" rank="tribe" tribe="Stevardiini">Stevardiini</taxonomicName>
|
||
but did not discuss its relationships with other genera. Our UCE inferred phylogeny resolves
|
||
<taxonomicName id="4C0A79D56E72EF321990FE850818FE70" authorityName="Eigenmann" authorityYear="1913" box="[178,286,363,387]" family="Characidae" genus="Argopleura" kingdom="Animalia" order="Characiformes" pageId="9" pageNumber="10" phylum="Chordata" rank="genus">
|
||
<emphasis id="B97EDE446E72EF321990FE850818FE70" box="[178,286,363,387]" italics="true" pageId="9" pageNumber="10">Argopleura</emphasis>
|
||
</taxonomicName>
|
||
as the sister-lineage of all
|
||
<taxonomicName id="4C0A79D56E72EF321B35FE850B92FE70" box="[535,660,363,387]" family="Stevardiidae" pageId="9" pageNumber="10" rank="family">Stevardiidae</taxonomicName>
|
||
excluding Landoninae, Xenurobryconinae, and
|
||
<taxonomicName id="4C0A79D56E72EF3218C5FE650BA5FE50" authorityName="Eigenmann" authorityYear="1914" box="[487,675,395,419]" family="Characidae" kingdom="Animalia" order="Characiformes" pageId="9" pageNumber="10" phylum="Chordata" rank="subFamily" subFamily="Glandulocaudinae">Glandulocaudinae</taxonomicName>
|
||
(
|
||
<figureCitation id="13311ED36E72EF321B93FE650BEEFE50" box="[689,744,395,419]" captionStart="Figure 3" captionStartId="6.[129,194,1842,1866]" captionTargetBox="[244,1358,150,1808]" captionTargetId="figure-6@6.[241,1361,147,1811]" captionTargetPageId="6" captionText="Figure 3. Phylogeny of Spintherobolidae and Stevardiidae and subfamilies Landoninae, Xenurobryconinae, Glandulocaudinae, Argopleurinae, Hemibryconinae, Stevardiinae, Planaltininae, Creagrutinae, and Diapominae based on 1348 nuclear loci of ultraconserved elements (538 472 bp). Numbers near nodes represent bootstrap support." pageId="9" pageNumber="10">Fig. 3</figureCitation>
|
||
); thus we formally describe the new subfamily, Argopleurinae, endemic to the Andean region (
|
||
<figureCitation id="13311ED36E72EF3218BFFE2708D3FE12" box="[413,469,457,481]" captionStart="Figure 3" captionStartId="6.[129,194,1842,1866]" captionTargetBox="[244,1358,150,1808]" captionTargetId="figure-6@6.[241,1361,147,1811]" captionTargetPageId="6" captionText="Figure 3. Phylogeny of Spintherobolidae and Stevardiidae and subfamilies Landoninae, Xenurobryconinae, Glandulocaudinae, Argopleurinae, Hemibryconinae, Stevardiinae, Planaltininae, Creagrutinae, and Diapominae based on 1348 nuclear loci of ultraconserved elements (538 472 bp). Numbers near nodes represent bootstrap support." pageId="9" pageNumber="10">Fig. 3</figureCitation>
|
||
).
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |