204 lines
19 KiB
XML
204 lines
19 KiB
XML
<document ID-DOI="http://dx.doi.org/10.3897/mycokeys.65.47704" ID-GBIF-Dataset="00685a01-0785-47ec-aa0b-77c991ee4b08" ID-PMC="PMC7078340" ID-Pensoft-Pub="1314-4049-65-49" ID-Pensoft-UUID="DED2BF86E6FD56179642F7119604CEB9" ID-PubMed="32206025" ModsDocID="1314-4049-65-49" checkinTime="1583860301782" checkinUser="pensoft" docAuthor="Hou, Lingwei, Hernandez-Restrepo, Margarita, Groenewald, Johannes Zacharias, Cai, Lei & Crous, Pedro W." docDate="2020" docId="2D1ADC7E658B55A18696E151FF5BDEC6" docLanguage="en" docName="MycoKeys 65: 49-99" docOrigin="MycoKeys 65" docSource="http://dx.doi.org/10.3897/mycokeys.65.47704" docTitle="Paraboeremia rekkeri Hern. - Restr., L. W. Hou, L. Cai & Crous 2020, sp. nov." docType="treatment" docVersion="5" id="DED2BF86E6FD56179642F7119604CEB9" lastPageNumber="49" masterDocId="DED2BF86E6FD56179642F7119604CEB9" masterDocTitle="Citizen science project reveals high diversity in Didymellaceae (Pleosporales, Dothideomycetes)" masterLastPageNumber="99" masterPageNumber="49" pageNumber="49" updateTime="1732488328564" updateUser="ExternalLinkService">
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<mods:titleInfo id="7548C0B09D1CF7B4D07D2E0E02F25640">
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<mods:title id="73E1D1764FFBC95B7F8A6061FF233ED5">Citizen science project reveals high diversity in Didymellaceae (Pleosporales, Dothideomycetes)</mods:title>
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<mods:namePart id="95394FAD7D954AA2D3435BC29707A974">Hou, Lingwei</mods:namePart>
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<mods:roleTerm id="33254E08863825EB290606B1FB709904">Author</mods:roleTerm>
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<mods:namePart id="508404C2AA0A323C54AED0CD9E488925">Hernandez-Restrepo, Margarita</mods:namePart>
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<mods:roleTerm id="AD24D6DCE3E35432EE92DDA6317AA273">Author</mods:roleTerm>
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<mods:namePart id="EA5E7CEA7371F95EDB76B64DA998D96D">Groenewald, Johannes Zacharias</mods:namePart>
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<mods:name id="B610A5F0ABEE64402E1E168D6B22F887" type="personal">
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<mods:namePart id="1D9A1A9F0D911106CE0567FBBCD82EA8">Cai, Lei</mods:namePart>
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<mods:name id="8BCFD868108870537EB925B27762B24B" type="personal">
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<mods:roleTerm id="190CE68E59A9B4851E7C3FD7687B76B7">Author</mods:roleTerm>
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<mods:namePart id="04277D3AFE35DCA02539775FCD25E450">Crous, Pedro W.</mods:namePart>
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<mods:typeOfResource id="38C63F3031351299E8F33B2AD291016B">text</mods:typeOfResource>
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<mods:title id="0313E6EBDC74DAE5DD4BD8E176071C60">MycoKeys</mods:title>
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<mods:part id="BF3D3A73DD4F57F69DAFA78A93B7E4ED">
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<mods:date id="0C33BC80C13BB335FDC2FEFA3973CE82">2020</mods:date>
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<mods:number id="64FAAB1F785FD179C3107CEB79F73D6B">65</mods:number>
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<mods:start id="000EB8787B6D4AC13E515570F56B42FE">49</mods:start>
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<mods:end id="894F9E6BACF15440B73A8CBEE75AF036">99</mods:end>
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<mods:url id="D075CBFF81DDC3534633359E4CFF81EA">http://dx.doi.org/10.3897/mycokeys.65.47704</mods:url>
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<mods:classification id="E580C8DBDE74AFFE0B5CFECD3B7B9221">journal article</mods:classification>
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<mods:identifier id="89D82C11A5CDCA599A70BD202C0E30E6" type="DOI">http://dx.doi.org/10.3897/mycokeys.65.47704</mods:identifier>
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<mods:identifier id="A62C041B0C90DD954722C465DB8D8A2F" type="Pensoft-Pub">1314-4049-65-49</mods:identifier>
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<treatment id="2D1ADC7E658B55A18696E151FF5BDEC6" ID-GBIF-Taxon="162481731" LSID="urn:lsid:plazi:treatment:2D1ADC7E658B55A18696E151FF5BDEC6" httpUri="http://treatment.plazi.org/id/2D1ADC7E658B55A18696E151FF5BDEC6" lastPageNumber="49" pageId="0" pageNumber="49" scope_class="Dothideomycetes" scope_family="Didymellaceae" scope_order="Pleosporales">
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<subSubSection id="98D55CEDE4AF71110AF50AE872FFFC2A" pageId="0" pageNumber="49" type="nomenclature">
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<paragraph id="2B661D5F556C75AB81ACBFDE868C488A" pageId="0" pageNumber="49">
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<taxonomicName id="E6E05D67B9E08527F7B04156573E942B" ID-CoL="9ZCW2" LSID="2D1ADC7E-658B-55A1-8696-E151FF5BDEC6" authority="Hern. - Restr., L. W. Hou, L. Cai & Crous" authorityName="Hern. - Restr., L. W. Hou, L. Cai & Crous" authorityYear="2020" class="Dothideomycetes" family="Didymellaceae" genus="Paraboeremia" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Paraboeremia rekkeri" order="Pleosporales" pageId="0" pageNumber="49" phylum="Ascomycota" rank="species" species="rekkeri" status="sp. nov.">Paraboeremia rekkeri Hern.-Restr., L. W. Hou, L. Cai & Crous</taxonomicName>
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<taxonomicNameLabel id="139039E534867F6B1636E2757393D56B" pageId="0" pageNumber="49">sp. nov.</taxonomicNameLabel>
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<figureCitation id="7A2BACE5B7EAC98E59D69F3F9C1832C6" captionStart="Figure 7" captionStartId="F7" captionText="Figure 7. Paraboeremia rekkeri (CBS 144955). A, B Colony on OA (front and reverse) C, D colony on MEA (front and reverse) E, F colony on PDA (front and reverse) G pycnidia forming on OA H pycnidium I section of pycnidium J section of pycnidial wall K-N conidiogenous cells O conidia. Scale bars: 100 μm (H); 20 μm (I); 10 μm (J); 5 μm (K-O)." figureDoi="10.3897/mycokeys.65.47704.figure7" httpUri="https://binary.pensoft.net/fig/388210" pageId="0" pageNumber="49">Figure 7</figureCitation>
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</paragraph>
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</subSubSection>
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<subSubSection id="60AEB9B06EBD59509F5530037A1B8F4D" pageId="0" pageNumber="49" type="etymology">
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<paragraph id="64658B90972464496FDA275D5A49EB0B" pageId="0" pageNumber="49">Etymology.</paragraph>
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<paragraph id="1F23A8EBA4E7AAE7154887717D73295D" pageId="0" pageNumber="49">
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<taxonomicName id="55C9170F66DCD916CE3864BC792170B7" authorityName="Hern. - Restr., L. W. Hou, L. Cai & Crous" authorityYear="2020" class="Dothideomycetes" family="Didymellaceae" genus="Paraboeremia" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="rekkeri" order="Pleosporales" pageId="0" pageNumber="49" phylum="Ascomycota" rank="species" species="rekkeri">
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<emphasis id="DDB380DEFE0538A4E6F0EC929BF481F3" italics="true" pageId="0" pageNumber="49">rekkeri</emphasis>
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</taxonomicName>
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refers to Daan Rekker who collected the soil sample from which the ex-type strain was isolated.
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</paragraph>
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</subSubSection>
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<subSubSection id="A9F338D980E0609F46D68D278CA6817D" pageId="0" pageNumber="49" type="typus">
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<paragraph id="F405B44A0A00114F8BDFC3BFAA555ED6" pageId="0" pageNumber="49">Typus.</paragraph>
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<paragraph id="2304218B03C82D9A187295AD9AEE84AA" pageId="0" pageNumber="49">
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The Netherlands. Gelderland province, Geldermalsen, isolated from garden soil, Mar. 2017, D. Rekker (
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<emphasis id="C6F506E4DD7AE3A2A3288EC910F63085" bold="true" italics="true" pageId="0" pageNumber="49">holotype</emphasis>
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designated here CBS H-24107, living ex-type culture CBS 144955 = JW 172002).
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</paragraph>
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<paragraph id="D0E3825EE8D3C290F5F03141BB707479" pageId="0" pageNumber="49">
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<emphasis id="A5FD17797F2195F604D474F9FF8B5589" italics="true" pageId="0" pageNumber="49">Conidiomata</emphasis>
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pycnidial, superficial, scattered or aggregated, solitary or confluent, globose or subglobose, irregularly-shaped with age, buff to brown, covered with abundant mycelial outgrowths especially when young, 150-390
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<normalizedToken id="AFA3081737154911C7C2AE21CAE9A291" originalValue="×">x</normalizedToken>
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120-320
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<normalizedToken id="75A41C21C79CD22E8BFCA9F7864986F4" originalValue="μm">μm</normalizedToken>
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; 1-2 papillate or non-papillate ostioles; pycnidial wall pseudoparenchymatous, 3-7 layers, 17.5-37
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<normalizedToken id="8E687693DE0D2FA15B5D1DB5E173FAEB" originalValue="μm">μm</normalizedToken>
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thick, outer layers composed of brown, flattened polygonal cells, 10-21
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<normalizedToken id="3C9EF5F7DD0ECFF5CA9B83E478A326D0" originalValue="μm">μm</normalizedToken>
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diam.
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<emphasis id="A0EF8F29BBD67DED0E194E3E243DE6C7" italics="true" pageId="0" pageNumber="49">Conidiogenous cells</emphasis>
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phialidic, hyaline, smooth, globose, subglobose or ampulliform, 5-10
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<normalizedToken id="675A03373BF6406F036C284E9F5EB927" originalValue="×">x</normalizedToken>
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4.5-7.5
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<normalizedToken id="E3A91232C22833628E999CAC548A275F" originalValue="μm">μm</normalizedToken>
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.
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<emphasis id="46C87099ECEDB5D486F76BB118821E10" italics="true" pageId="0" pageNumber="49">Conidia</emphasis>
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ellipsoidal to oblong, thin- and smooth-walled, hyaline, aseptate, 3.5-5
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<normalizedToken id="4DBE2AFEE3E72B7A8651B247A5A31430" originalValue="×">x</normalizedToken>
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2.5-3
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<normalizedToken id="E85E5771E9C48EBD36F9BB4252E6AA70" originalValue="μm">μm</normalizedToken>
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, with 2(-3) large guttules.
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<taxonomicName id="6E3875BE964E2F4C4A7EBBF116CBAE58" genus="Conidial" lsidName="Conidial matrix" pageId="0" pageNumber="49" rank="species" species="matrix">
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<emphasis id="1768A7366DC410B2D5CAACCC012D2A41" italics="true" pageId="0" pageNumber="49">Conidial matrix</emphasis>
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</taxonomicName>
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pink.
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</paragraph>
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</subSubSection>
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<subSubSection id="2024F4E4D71AEDAE0D21AD83F06A606C" pageId="0" pageNumber="49" type="description">
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<paragraph id="CC7A5D235A62B76E3BD3538744D6A57E" pageId="0" pageNumber="49">Culture characteristics.</paragraph>
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<paragraph id="20AE34710101183C3B890881DD0396CB" pageId="0" pageNumber="49">Colonies after 7 d at 25 °C, on OA reaching 75-80 mm diam, aerial mycelium floccose, saffron, vinaceous buff, pale olivaceous, margin regular; reverse concentric circles saffron, grey, olivaceous grey. On MEA reaching 55-60 mm diam, aerial mycelium floccose, margin irregular, pale olivaceous grey to whitish, orange near edge; reverse brown to dark brown, orange towards the periphery. On PDA reaching 70-75 mm diam, margin irregular, covered by felty aerial mycelium, buff, olivaceous grey towards periphery; reverse mouse, olivaceous towards periphery. NaOH spot test negative on OA.</paragraph>
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</subSubSection>
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<subSubSection id="4C3F50474B98C80E087799F47B61BB8D" pageId="0" pageNumber="49" type="materials_examined">
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<paragraph id="3433D9860FBD2A8A41773F22B34C9597" pageId="0" pageNumber="49">Additional specimens examined.</paragraph>
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<paragraph id="972508A93D08487C367A9DBF93B4308A" pageId="0" pageNumber="49">Gelderland province, Culemborg, isolated from garden soil, Mar. 2017, H. van de Warenburg, JW 3018; Kapel-Avezaath, isolated from garden soil, Mar. 2017, A. Panneman, JW 79024; Meteren, isolated from garden soil, S. van Stuijvenberg, JW 132004; North Brabant province, Breda, isolated from garden soil, Mar. 2017, F. Wiegerinck, CBS 144949 = JW 4024; Breda, isolated from garden soil, Mar. 2017, F. Versantvoort, JW 167006; Zwanenburg, isolated from garden soil, Mar. 2017, J. Rebergen, JW 91008; North Holland province, Alkmaar, Mar. 2017, B. Verschoor, JW 13016, ibid. JW 13017 and JW13030; Utrecht province, Bilthoven, isolated from garden soil, Mar. 2017, H. Vos & S. Vos, JW 51014; Eemnes, isolated from garden soil, Mar. 2017, H.W. Vos, CBS 144950 = JW 6005; Hooglanderveen, isolated from garden soil, Mar. 2017, F. Rijpma, JW 25013; Utrecht, isolated from garden soil, R. van Zijl, JW 226002.</paragraph>
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</subSubSection>
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<subSubSection id="52B179720B4E7AE84CF70E59C49FEF65" pageId="0" pageNumber="49" type="notes">
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<paragraph id="B8DF0997734262ACB8A27B28A160BF5B" pageId="0" pageNumber="49">Notes.</paragraph>
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<paragraph id="5D5856530DE681C153D018398888F53C" pageId="0" pageNumber="49">
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<taxonomicName id="A03031FFF57D5BCB56C434B3D9B750CA" authorityName="Hern. - Restr., L. W. Hou, L. Cai & Crous" authorityYear="2020" class="Dothideomycetes" family="Didymellaceae" genus="Paraboeremia" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Paraboeremia rekkeri" order="Pleosporales" pageId="0" pageNumber="49" phylum="Ascomycota" rank="species" species="rekkeri">
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<emphasis id="238FD4D7DA6D8D8998526020F1D6C0F1" italics="true" pageId="0" pageNumber="49">Paraboeremia rekkeri</emphasis>
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</taxonomicName>
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formed a well-supported (1.0/100/96) distinct lineage in
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<taxonomicName id="5F0A056D3EACE4AC97A7492309F0CDA9" authorityName="Q.T.Chen & L.Cai" authorityYear="2015" class="Dothideomycetes" family="Didymellaceae" genus="Paraboeremia" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Paraboeremia" order="Pleosporales" pageId="0" pageNumber="49" phylum="Ascomycota" rank="genus">
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<emphasis id="F460580E002AF03BB973CF2B7D9E69D3" italics="true" pageId="0" pageNumber="49">Paraboeremia</emphasis>
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</taxonomicName>
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(Figure
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<figureCitation id="CCCEDE436F33A5A1D18DDD428258F84E" captionStart="Figure 1" captionStartId="F1" captionText="Figure 1. Phylogenetic tree generated from the maximum-likelihood analysis based on the combined ITS, LSU, tub 2 and rpb 2 sequence alignment of Didymellaceae members. The RAxML bootstrap support values (BS), Bayesian posterior probabilities (PP), and parsimony bootstrap support values (PBS) are given at the nodes (BS / PP / PBS). BS and PBS values represent parsimony bootstrap support values> 50 %. Full supported branches are indicated in bold. The scale bar represents the expected number of changes per site. Ex-type strains are represented in bold. Strains obtained in the current study are printed in green; among them, whilst strains that represent new taxa are printed in red. Some of the basal branches were shortened to facilitate layout (the fraction in round parentheses refers to the presented length compared to the actual length of the branch). The tree was rooted to Coniothyrium palmarum CBS 400.71 and Leptosphaeria doliolum CBS 505.75." figureDoi="10.3897/mycokeys.65.47704.figure1" httpUri="https://binary.pensoft.net/fig/388204" pageId="0" pageNumber="49">1</figureCitation>
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). It is most closely related with
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<taxonomicName id="C1E5CE3744D3501EA70E37EA3A934D34" lsidName="P. truiniorum" pageId="0" pageNumber="49" rank="species" species="truiniorum">
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<emphasis id="9CE60BDD712D3F6D6B203AC45DEC0EBB" italics="true" pageId="0" pageNumber="49">P. truiniorum</emphasis>
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</taxonomicName>
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, another novel species collected from Dutch soil and described in the present study. However,
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<taxonomicName id="61C88C92B8EA1B59BE5555A7955FB924" lsidName="P. rekkeri" pageId="0" pageNumber="49" rank="species" species="rekkeri">
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<emphasis id="5976074EE6A34ED27BC5DBADA7A81B63" italics="true" pageId="0" pageNumber="49">P. rekkeri</emphasis>
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</taxonomicName>
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is distinguished by producing larger pycnidia (150-390
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<normalizedToken id="7257F0CAC7229E7A01FFBA7D3571D9D4" originalValue="×">x</normalizedToken>
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120-320
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<normalizedToken id="432DB180E76893848B4F55493FA608E8" originalValue="μm">μm</normalizedToken>
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), with a thinner pycnidial wall (3-7 layers and 17.5-37
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<normalizedToken id="49491F8BC4D8E850D782CE50EF5CFE33" originalValue="μm">μm</normalizedToken>
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thick). Pycnidia in
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<taxonomicName id="9CBA0A017014D11F27016A0A024954BC" lsidName="P. truiniorum" pageId="0" pageNumber="49" rank="species" species="truiniorum">
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<emphasis id="DCC04A3ECDE40F99BFF441F4D04A4474" italics="true" pageId="0" pageNumber="49">P. truiniorum</emphasis>
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</taxonomicName>
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are 160-420
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<normalizedToken id="B54A5BC7CF2DACEC05ED0D7BB0A77864" originalValue="×">x</normalizedToken>
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135-430
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<normalizedToken id="3753A327036D9ADABF13BCA8FF412BD9" originalValue="μm">μm</normalizedToken>
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, and have a wall of 7-11 layers and 40-70
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<normalizedToken id="B470D6F199998148452BCD8A0BD8A205" originalValue="μm">μm</normalizedToken>
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thick.
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</paragraph>
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<caption id="4955ADE511CEED9F4DFCFB864E50BCC6" doi="10.3897/mycokeys.65.47704.figure7" httpUri="https://binary.pensoft.net/fig/388210" pageId="0" pageNumber="49" start="Figure 7" startId="F7">
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<paragraph id="D22F19AB435DA2092058E4632D64D14A" pageId="0" pageNumber="49">
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<emphasis id="867F20642181662B6B766371240662A6" bold="true" pageId="0" pageNumber="49">Figure 7.</emphasis>
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<taxonomicName id="953AED05CA75E0282CB650F7012FEEB3" authorityName="Hern. - Restr., L. W. Hou, L. Cai & Crous" authorityYear="2020" class="Dothideomycetes" family="Didymellaceae" genus="Paraboeremia" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Paraboeremia rekkeri" order="Pleosporales" pageId="0" pageNumber="49" phylum="Ascomycota" rank="species" species="rekkeri">
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<emphasis id="C37B8E2A29813CFF9D51B43661500E22" italics="true" pageId="0" pageNumber="49">Paraboeremia rekkeri</emphasis>
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</taxonomicName>
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(CBS 144955).
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<emphasis id="63B3360F2FF16D66623A885631FF7699" bold="true" pageId="0" pageNumber="49">A, B</emphasis>
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Colony on OA (front and reverse)
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<emphasis id="9DCA6C86427EE15DB3E17E4E94128AB4" bold="true" pageId="0" pageNumber="49">C, D</emphasis>
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colony on MEA (front and reverse)
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<emphasis id="357A6E56EE8408F231CFF690D482C424" bold="true" pageId="0" pageNumber="49">E, F</emphasis>
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colony on PDA (front and reverse)
|
||
<emphasis id="52F0D138625F2D58033D0C7D7185FA30" bold="true" pageId="0" pageNumber="49">G</emphasis>
|
||
pycnidia forming on OA
|
||
<emphasis id="1CC8AA2D067DF7C7BD150F091B58DBC0" bold="true" pageId="0" pageNumber="49">H</emphasis>
|
||
pycnidium
|
||
<emphasis id="2189007C989AF70FE0BABE19DB2C394A" bold="true" pageId="0" pageNumber="49">I</emphasis>
|
||
section of pycnidium
|
||
<emphasis id="7393961FC9A018312C735E12F4DC9AD6" bold="true" pageId="0" pageNumber="49">J</emphasis>
|
||
section of pycnidial wall
|
||
<emphasis id="633EB24E044C8DAB88CA4566223E3A12" bold="true" pageId="0" pageNumber="49">K-N</emphasis>
|
||
conidiogenous cells
|
||
<emphasis id="DBEFDADFDE097BCDCB418BF51612B6CA" bold="true" pageId="0" pageNumber="49">O</emphasis>
|
||
conidia. Scale bars: 100
|
||
<normalizedToken id="4363312958288C3051C650F949DDC572" originalValue="μm">μm</normalizedToken>
|
||
(
|
||
<emphasis id="6A4271A1B6A7A2495C24D0922BE1A22D" bold="true" pageId="0" pageNumber="49">H</emphasis>
|
||
); 20
|
||
<normalizedToken id="1181E2E3706CDB5690B6648C9186BB5A" originalValue="μm">μm</normalizedToken>
|
||
(
|
||
<emphasis id="DAA3FAFA36DC25C60A749CFDC9474BBA" bold="true" pageId="0" pageNumber="49">I</emphasis>
|
||
); 10
|
||
<normalizedToken id="8971BA35425DD83B95C81F50711E0A2C" originalValue="μm">μm</normalizedToken>
|
||
(
|
||
<emphasis id="30F26B57B0B78E42FE19CD243C8410C3" bold="true" pageId="0" pageNumber="49">J</emphasis>
|
||
); 5
|
||
<normalizedToken id="B6EA15EA0960BC6A9FFDD2E6DFE7F26D" originalValue="μm">μm</normalizedToken>
|
||
(
|
||
<emphasis id="7307394CE06C096DC5E18284D356CDD8" bold="true" pageId="0" pageNumber="49">K-O</emphasis>
|
||
).
|
||
</paragraph>
|
||
</caption>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |