265 lines
25 KiB
XML
265 lines
25 KiB
XML
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<mods:title id="87061B5651AB2C05E9FDF402222A70F8">Phylogenomics of Characidae, a hyper-diverse Neotropical freshwater fish lineage, with a phylogenetic classification including four families (Teleostei: Characiformes)</mods:title>
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<mods:namePart id="A07F4BAC0ACCF19A74A3F06B9EBF1DC4">Melo, Bruno F</mods:namePart>
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<mods:namePart id="5D17086634CB85C0725DA696A1A6A2A5">Ota, Rafaela P</mods:namePart>
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<mods:namePart id="4E8B4E67A70405B5A12A3091B399EF39">Benine, Ricardo C</mods:namePart>
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<mods:namePart id="2C4FB6597192575B48083A32D78FD639">Mattox, George M T</mods:namePart>
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<mods:namePart id="580AA537D989AF2164DBF4904EC555A2">Faria, Tiago C</mods:namePart>
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<mods:namePart id="7ADE2F9861A1ED09C1EF47DC70556A8E">Roxo, Fabio F</mods:namePart>
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<mods:namePart id="2E91C20F15BF9450D068C64A556C3CA3">Valdez-Moreno, Martha</mods:namePart>
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<mods:namePart id="631067C7CDE2B32B415684B7AF2EF847">Near, Thomas J</mods:namePart>
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<mods:namePart id="0CF26DCB5F56374A29C3F436199AE5AA">Oliveira, Claudio</mods:namePart>
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<mods:title id="D6A0164DCEA0A805B552B35DDA216082">Zoological Journal of the Linnean Society</mods:title>
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<mods:date id="185F9A545EEA5857DC4BA6550D0AEAE4">2024</mods:date>
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<mods:title id="E63B194CA0753CD320CA36FC0642A3A6">Zool. J. Linn. Soc.</mods:title>
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<mods:number id="4CE9E031CB1A15A6CE6FED301E63710F">2024-09-03</mods:number>
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<mods:number id="E08A1E2D2FBB14B9C197FBEAFF20C598">202</mods:number>
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<subSubSection id="C31051DD6E75EF351AC6F9CB0C11F9CC" box="[996,1303,1573,1599]" pageId="14" pageNumber="15" type="nomenclature">
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<emphasis id="B97EDE446E75EF351AC6F9CB0C11F9CC" bold="true" box="[996,1303,1573,1599]" pageId="14" pageNumber="15">Tetragonopterinae Gill, 1858</emphasis>
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genus:
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<taxonomicName id="4C0A79D56E75EF351A92F9880DD0F98E" authority="Cuvier, 1816" authorityName="Cuvier" authorityYear="1816" box="[944,1238,1637,1661]" family="Characidae" genus="Tetragonopterus" kingdom="Animalia" order="Characiformes" pageId="14" pageNumber="15" phylum="Chordata" rank="genus">
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<emphasis id="B97EDE446E75EF351A92F9880D4BF98E" box="[944,1101,1638,1661]" italics="true" pageId="14" pageNumber="15">Tetragonopterus</emphasis>
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Cuvier, 1816
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.
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Included genus:
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<taxonomicName id="4C0A79D56E75EF351AC3F9680D78F96E" authorityName="Cuvier" authorityYear="1816" box="[993,1150,1670,1693]" family="Characidae" genus="Tetragonopterus" kingdom="Animalia" order="Characiformes" pageId="14" pageNumber="15" phylum="Chordata" rank="genus">
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<emphasis id="B97EDE446E75EF351AC3F9680D78F96E" box="[993,1150,1670,1693]" italics="true" pageId="14" pageNumber="15">Tetragonopterus</emphasis>
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</taxonomicName>
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.
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<subSubSection id="C31051DD6E75EF351A1BF9500C99F8C7" pageId="14" pageNumber="15" type="description">
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<paragraph id="8BB502566E75EF351A1BF9500C99F8C7" blockId="14.[825,1475,1726,1844]" pageId="14" pageNumber="15">
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<emphasis id="B97EDE446E75EF351A1BF9500AA4F925" box="[825,930,1726,1750]" italics="true" pageId="14" pageNumber="15">Definition:</emphasis>
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The least inclusive crown clade that contains
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<taxonomicName id="4C0A79D56E75EF351A1BF9300DD9F906" authority="Cuvier, 1816" authorityName="Cuvier" authorityYear="1816" box="[825,1247,1757,1781]" family="Characidae" genus="Tetragonopterus" kingdom="Animalia" order="Characiformes" pageId="14" pageNumber="15" phylum="Chordata" rank="species" species="argenteus">
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<emphasis id="B97EDE446E75EF351A1BF9300D47F906" box="[825,1089,1758,1781]" italics="true" pageId="14" pageNumber="15">Tetragonopterus argenteus</emphasis>
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Cuvier, 1816
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</taxonomicName>
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and
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<taxonomicName id="4C0A79D56E75EF351C07F9300D14F8E6" authority="(Gery, 1965)" baseAuthorityName="Gery" baseAuthorityYear="1965" family="Characidae" genus="Tetragonopterus" kingdom="Animalia" order="Characiformes" pageId="14" pageNumber="15" phylum="Chordata" rank="species" species="georgiae">
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<emphasis id="B97EDE446E75EF351C07F9300A8EF8E7" italics="true" pageId="14" pageNumber="15">Tetragonopterus georgiae</emphasis>
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(Géry, 1965)
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</taxonomicName>
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. This is a minimum-crown-clade definition. See
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<figureCitation id="13311ED36E75EF351A40F8F20AB0F8C7" box="[866,950,1820,1844]" captionStart="Figure 4" captionStartId="12.[129,194,1839,1863]" captionTargetBox="[243,1360,148,1806]" captionTargetId="figure-6@12.[240,1363,145,1809]" captionTargetPageId="12" captionText="Figure 4. Phylogeny of Characidae and subfamilies Aphyocharacinae, Cheirodontinae, Exodontinae, Tetragonopterinae, and Characinae based on 1348 nuclear loci of ultraconserved elements (538 472 bp). Numbers near nodes represent bootstrap support." pageId="14" pageNumber="15">Figure 4</figureCitation>
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||
for a reference phylogeny of
|
||
<taxonomicName id="4C0A79D56E75EF351DF9F8F20C9DF8C7" authorityName="Gill" authorityYear="1858" box="[1243,1435,1820,1844]" family="Characidae" kingdom="Animalia" order="Characiformes" pageId="14" pageNumber="15" phylum="Chordata" rank="subFamily" subFamily="Tetragonopterinae">Tetragonopterinae</taxonomicName>
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.
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<subSubSection id="C31051DD6E75EF351A1BF8BB0AABF85F" pageId="14" pageNumber="15" type="etymology">
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<paragraph id="8BB502566E75EF351A1BF8BB0AABF85F" blockId="14.[825,1474,1877,1964]" pageId="14" pageNumber="15">
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<emphasis id="B97EDE446E75EF351A1BF8BB0AAEF89E" box="[825,936,1877,1901]" italics="true" pageId="14" pageNumber="15">Etymology:</emphasis>
|
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From the ancient Greek τετΡᾰ- (tˈɛtɹə) meaning four, γωνία (ɡˈo͡ʊniə) meaning angle, and πτεΡὀν (tˈɛɹɑːn) meaning fin or wing.
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</paragraph>
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<subSubSection id="C31051DD6E74EF341953FF7E0B8BFCE8" pageId="15" pageNumber="16" type="discussion">
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<paragraph id="8BB502566E74EF341953FF7E0B8BFCE8" blockId="15.[113,763,144,795]" pageId="15" pageNumber="16">
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<emphasis id="B97EDE446E74EF341953FF7E09C9FF5B" box="[113,207,144,168]" italics="true" pageId="15" pageNumber="16">Remarks:</emphasis>
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The initial description of Tetragonopterinae dates to the 19th century and traditionally included many species of
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||
<taxonomicName id="4C0A79D56E74EF341953FF2109E3FF14" authorityName="Latreille" authorityYear="1825" box="[113,229,207,231]" family="Characidae" kingdom="Animalia" order="Characiformes" pageId="15" pageNumber="16" phylum="Chordata" rank="family">Characidae</taxonomicName>
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||
(Gill 1858, Géry 1977). The composition changed with the publication of the
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<emphasis id="B97EDE446E74EF341854FF00083AFED6" italics="true" pageId="15" pageNumber="16">Checklist of the Freshwater Fishes of South and Central America</emphasis>
|
||
(
|
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<bibRefCitation id="EF9B7FA76E74EF341869FEE308E2FED6" author="Reis RE & Kullander SO & Ferraris CJ" box="[331,484,269,293]" pageId="15" pageNumber="16" refId="ref33895" refString="Reis RE, Kullander SO, Ferraris CJ (eds). Checklist of the Freshwater Fishes of South and Central America. Porto Alegre: Edipucrs, 2003." type="book" year="2003">
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||
Reis
|
||
<emphasis id="B97EDE446E74EF34185FFEE008A3FED6" box="[381,421,269,293]" italics="true" pageId="15" pageNumber="16">et al</emphasis>
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||
. 2003
|
||
</bibRefCitation>
|
||
), where
|
||
<taxonomicName id="4C0A79D56E74EF341B1FFEE30BFCFED6" authorityName="Gill" authorityYear="1858" box="[573,762,269,293]" family="Characidae" kingdom="Animalia" order="Characiformes" pageId="15" pageNumber="16" phylum="Chordata" rank="subFamily" subFamily="Tetragonopterinae">Tetragonopterinae</taxonomicName>
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||
was limited to the genus
|
||
<taxonomicName id="4C0A79D56E74EF341856FEC30B90FEB6" authority="(Reis 2003)" baseAuthorityName="Reis" baseAuthorityYear="2003" box="[372,662,301,325]" family="Characidae" genus="Tetragonopterus" kingdom="Animalia" order="Characiformes" pageId="15" pageNumber="16" phylum="Chordata" rank="genus">
|
||
<emphasis id="B97EDE446E74EF341856FEC30B17FEB7" box="[372,529,301,324]" italics="true" pageId="15" pageNumber="16">Tetragonopterus</emphasis>
|
||
(Reis 2003)
|
||
</taxonomicName>
|
||
. The molecular studies in the early 21st century have resulted in recognized species’ diversity in
|
||
<taxonomicName id="4C0A79D56E74EF3418A6FE820B27FE70" baseAuthorityName="Reis" baseAuthorityYear="2003" box="[388,545,364,387]" family="Characidae" genus="Tetragonopterus" kingdom="Animalia" order="Characiformes" pageId="15" pageNumber="16" phylum="Chordata" rank="genus">
|
||
<emphasis id="B97EDE446E74EF3418A6FE820B27FE70" box="[388,545,364,387]" italics="true" pageId="15" pageNumber="16">Tetragonopterus</emphasis>
|
||
</taxonomicName>
|
||
increasing from two to 13 species (Melo
|
||
<emphasis id="B97EDE446E74EF341863FE650876FE50" box="[321,368,395,419]" italics="true" pageId="15" pageNumber="16">et al.</emphasis>
|
||
2011,
|
||
<bibRefCitation id="EF9B7FA76E74EF341896FE650B54FE50" author="Silva GSC & Melo BF & Oliveira C" box="[436,594,395,419]" pageId="15" pageNumber="16" pagination="1613 - 31" refId="ref34517" refString="Silva GSC, Melo BF, Oliveira C et al. Morphological and molecular evidence for two new species of Tetragonopterus (Characiformes: Characidae) from central Brazil. Journal of Fish Biology 2013; 82: 1613 - 31. hups: // doi. org / 10.1111 / jOE. 12094" type="journal article" year="2013">
|
||
Silva
|
||
<emphasis id="B97EDE446E74EF3418C8FE650B15FE50" box="[490,531,395,419]" italics="true" pageId="15" pageNumber="16">et al</emphasis>
|
||
. 2013
|
||
</bibRefCitation>
|
||
,
|
||
<bibRefCitation id="EF9B7FA76E74EF341B7CFE640B94FE51" author="Silva GSC & Melo BF & Oliveira C" box="[606,658,394,418]" pageId="15" pageNumber="16" pagination="1 - 46" refId="ref34571" refString="Silva GSC, Melo BF, Oliveira C et al. Revision of the South American genus Tetragonopterus Cuvier, 1816 (Teleostei: Characidae) with description of four new species. Zootaxa 2016; 4200: 1 - 46." type="journal article" year="2016">2016</bibRefCitation>
|
||
,
|
||
<bibRefCitation id="EF9B7FA76E74EF341BBFFE6509DAFE31" author="Urbanski BQ & Melo BF & Silva GSC" pageId="15" pageNumber="16" refId="ref35460" refString="Urbanski BQ, Melo BF, Silva GSC et al. A new species of Tetragonopterus (Characiformes: Characidae) from Central Amazon lowlands, Brazil. Neotropical Ichthyology 2018; 16: e 170158." type="journal volume" year="2018">
|
||
Urbanski
|
||
<emphasis id="B97EDE446E74EF341953FE4509A4FE31" box="[113,162,426,450]" italics="true" pageId="15" pageNumber="16">et al.</emphasis>
|
||
2018
|
||
</bibRefCitation>
|
||
). The monophyly of
|
||
<taxonomicName id="4C0A79D56E74EF341899FE450B5EFE31" baseAuthorityName="Reis" baseAuthorityYear="2003" box="[443,600,427,450]" family="Characidae" genus="Tetragonopterus" kingdom="Animalia" order="Characiformes" pageId="15" pageNumber="16" phylum="Chordata" rank="genus">
|
||
<emphasis id="B97EDE446E74EF341899FE450B5EFE31" box="[443,600,427,450]" italics="true" pageId="15" pageNumber="16">Tetragonopterus</emphasis>
|
||
</taxonomicName>
|
||
is supported in molecular phylogenies and morphological studies (Melo
|
||
<emphasis id="B97EDE446E74EF341BEBFE240BFDFE12" box="[713,763,457,481]" italics="true" pageId="15" pageNumber="16">et al.</emphasis>
|
||
2016, 2022,
|
||
<bibRefCitation id="EF9B7FA76E74EF3419D2FE070884FDF2" author="Mirande JM" box="[240,386,489,513]" pageId="15" pageNumber="16" pagination="282 - 300" refId="ref32677" refString="Mirande JM. Morphology, molecules and the phylogeny of Characidae (Teleostei: Characiformes). Cladistics 2019; 35: 282 - 300. hups: // doi. org / 10.1111 / cla. 12345" type="journal article" year="2019">Mirande 2019</bibRefCitation>
|
||
), and relaxed clock analyses indicate the lineage diversified in the Miocene (Melo
|
||
<emphasis id="B97EDE446E74EF341B6FFDE70B79FDD3" box="[589,639,520,544]" italics="true" pageId="15" pageNumber="16">et al.</emphasis>
|
||
2016). The relationships among species of
|
||
<taxonomicName id="4C0A79D56E74EF341889FDC60B4EFDCC" baseAuthorityName="Reis" baseAuthorityYear="2003" box="[427,584,552,575]" family="Characidae" genus="Tetragonopterus" kingdom="Animalia" order="Characiformes" pageId="15" pageNumber="16" phylum="Chordata" rank="genus">
|
||
<emphasis id="B97EDE446E74EF341889FDC60B4EFDCC" box="[427,584,552,575]" italics="true" pageId="15" pageNumber="16">Tetragonopterus</emphasis>
|
||
</taxonomicName>
|
||
in the UCE phylogeny differ from those inferred from Sanger-sequenced datasets (
|
||
<figureCitation id="13311ED36E74EF34195EFD8809B1FD8D" box="[124,183,614,638]" captionStart="Figure 4" captionStartId="12.[129,194,1839,1863]" captionTargetBox="[243,1360,148,1806]" captionTargetId="figure-6@12.[240,1363,145,1809]" captionTargetPageId="12" captionText="Figure 4. Phylogeny of Characidae and subfamilies Aphyocharacinae, Cheirodontinae, Exodontinae, Tetragonopterinae, and Characinae based on 1348 nuclear loci of ultraconserved elements (538 472 bp). Numbers near nodes represent bootstrap support." pageId="15" pageNumber="16">Fig. 4</figureCitation>
|
||
), specifically the resolution of
|
||
<taxonomicName id="4C0A79D56E74EF3418D9FD890B77FD8D" authorityName="Cuvier" authorityYear="1816" box="[507,625,615,638]" family="Characidae" genus="Tetragonopterus" kingdom="Animalia" order="Characiformes" pageId="15" pageNumber="16" phylum="Chordata" rank="species" species="argenteus">
|
||
<emphasis id="B97EDE446E74EF3418D9FD890B77FD8D" box="[507,625,615,638]" italics="true" pageId="15" pageNumber="16">T. argenteus</emphasis>
|
||
</taxonomicName>
|
||
as the sister-species of a clade containing
|
||
<taxonomicName id="4C0A79D56E74EF3418B4FD680BC9FD6E" authority="Silva et al., 2013" authorityName="Silva" authorityYear="2013" box="[406,719,645,669]" family="Characidae" genus="Tetragonopterus" kingdom="Animalia" order="Characiformes" pageId="15" pageNumber="16" phylum="Chordata" rank="species" species="araguaiensis">
|
||
<emphasis id="B97EDE446E74EF3418B4FD680B21FD6E" box="[406,551,646,669]" italics="true" pageId="15" pageNumber="16">T. araguaiensis</emphasis>
|
||
<bibRefCitation id="EF9B7FA76E74EF341B0EFD6B0BC9FD6E" author="Silva GSC & Melo BF & Oliveira C" box="[556,719,645,669]" pageId="15" pageNumber="16" pagination="1613 - 31" refId="ref34517" refString="Silva GSC, Melo BF, Oliveira C et al. Morphological and molecular evidence for two new species of Tetragonopterus (Characiformes: Characidae) from central Brazil. Journal of Fish Biology 2013; 82: 1613 - 31. hups: // doi. org / 10.1111 / jOE. 12094" type="journal article" year="2013">
|
||
Silva
|
||
<emphasis id="B97EDE446E74EF341B40FD680B8CFD6E" box="[610,650,645,669]" italics="true" pageId="15" pageNumber="16">et al</emphasis>
|
||
., 2013
|
||
</bibRefCitation>
|
||
</taxonomicName>
|
||
and
|
||
<taxonomicName id="4C0A79D56E74EF341953FD4B08A4FD4F" authority="Silva et al., 2016" authorityName="Silva" authorityYear="2016" box="[113,418,676,700]" family="Characidae" genus="Tetragonopterus" kingdom="Animalia" order="Characiformes" pageId="15" pageNumber="16" phylum="Chordata" rank="species" species="ommatus">
|
||
<emphasis id="B97EDE446E74EF341953FD4B09EFFD4F" box="[113,233,677,700]" italics="true" pageId="15" pageNumber="16">T. ommatus</emphasis>
|
||
<bibRefCitation id="EF9B7FA76E74EF3419D0FD4A08A4FD4F" author="Silva GSC & Melo BF & Oliveira C" box="[242,418,676,700]" pageId="15" pageNumber="16" pagination="1 - 46" refId="ref34571" refString="Silva GSC, Melo BF, Oliveira C et al. Revision of the South American genus Tetragonopterus Cuvier, 1816 (Teleostei: Characidae) with description of four new species. Zootaxa 2016; 4200: 1 - 46." type="journal article" year="2016">
|
||
Silva
|
||
<emphasis id="B97EDE446E74EF34180EFD4B085FFD4F" box="[300,345,676,700]" italics="true" pageId="15" pageNumber="16">et al</emphasis>
|
||
., 2016
|
||
</bibRefCitation>
|
||
</taxonomicName>
|
||
(
|
||
<figureCitation id="13311ED36E74EF341894FD4A08F5FD4E" box="[438,499,676,701]" captionStart="Figure 4" captionStartId="12.[129,194,1839,1863]" captionTargetBox="[243,1360,148,1806]" captionTargetId="figure-6@12.[240,1363,145,1809]" captionTargetPageId="12" captionText="Figure 4. Phylogeny of Characidae and subfamilies Aphyocharacinae, Cheirodontinae, Exodontinae, Tetragonopterinae, and Characinae based on 1348 nuclear loci of ultraconserved elements (538 472 bp). Numbers near nodes represent bootstrap support." pageId="15" pageNumber="16">Fig. 4</figureCitation>
|
||
).
|
||
<taxonomicName id="4C0A79D56E74EF341B2FFD4A0BCCFD4F" authorityName="Gill" authorityYear="1858" box="[525,714,676,700]" family="Characidae" kingdom="Animalia" order="Characiformes" pageId="15" pageNumber="16" phylum="Chordata" rank="subFamily" subFamily="Tetragonopterinae">Tetragonopterinae</taxonomicName>
|
||
and Exodontinae exhibit a similar biogeographic pattern with many species distributed on the Brazilian Shield;
|
||
<taxonomicName id="4C0A79D56E74EF341B1DFD0A0BB1FD08" authorityName="Cuvier" authorityYear="1816" box="[575,695,740,763]" family="Characidae" genus="Tetragonopterus" kingdom="Animalia" order="Characiformes" pageId="15" pageNumber="16" phylum="Chordata" rank="species" species="argenteus">
|
||
<emphasis id="B97EDE446E74EF341B1DFD0A0BB1FD08" box="[575,695,740,763]" italics="true" pageId="15" pageNumber="16">T. argenteus</emphasis>
|
||
</taxonomicName>
|
||
is the only species distributed in the La Plata basin (
|
||
<figureCitation id="13311ED36E74EF341B67FCEC0B7BFCE8" box="[581,637,770,795]" captionStart="Figure 4" captionStartId="12.[129,194,1839,1863]" captionTargetBox="[243,1360,148,1806]" captionTargetId="figure-6@12.[240,1363,145,1809]" captionTargetPageId="12" captionText="Figure 4. Phylogeny of Characidae and subfamilies Aphyocharacinae, Cheirodontinae, Exodontinae, Tetragonopterinae, and Characinae based on 1348 nuclear loci of ultraconserved elements (538 472 bp). Numbers near nodes represent bootstrap support." pageId="15" pageNumber="16">Fig. 4</figureCitation>
|
||
).
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |