144 lines
16 KiB
XML
144 lines
16 KiB
XML
<document id="59F31F68D1E6AAFFEB26A1A5C547FA91" ID-DOI="10.5852/ejt.2022.810.1723" ID-GBIF-Dataset="58fbfe9f-852b-493c-9611-822354c5a2a8" ID-ISSN="2118-9773" ID-Zenodo-Dep="6419522" ID-ZooBank="67E0CCF7-F768-4C5F-9F02-55EBFFADD3D5" IM.materialsCitations_approvedBy="juliana" IM.metadata_approvedBy="valdenar" IM.tables_approvedBy="juliana" IM.taxonomicNames_approvedBy="juliana" IM.treatmentCitations_approvedBy="juliana" IM.treatments_approvedBy="juliana" checkinTime="1649274388541" checkinUser="felipe" docAuthor="Nethupul, Hasitha, Stöhr, Sabine & Zhang, Haibin" docDate="2022" docId="487387A89B74FFF168992D795445C10F" docLanguage="en" docName="ejt-810_1-95.pdf" docOrigin="European Journal of Taxonomy 810 (1)" docSource="http://zoobank.org/67e0ccf7-f768-4c5f-9f02-55ebffadd3d5" docStyle="DocumentStyle:EF2B578F1D15862ADE45B0C07C620911.14:EJT.2018-.journal_article.type1" docStyleId="EF2B578F1D15862ADE45B0C07C620911" docStyleName="EJT.2018-.journal_article.type1" docStyleVersion="14" docTitle="Asteronychidae Ljungman 1867" docType="treatment" docVersion="2" lastPageNumber="74" masterDocId="B44AFFD09B3DFFBB68242A075772C751" masterDocTitle="New species, redescriptions and new records of deep-sea brittle stars (Echinodermata: Ophiuroidea) from the South China Sea, an integrated morphological and molecular approach" masterLastPageNumber="95" masterPageNumber="1" pageNumber="74" updateTime="1733333422880" updateUser="ExternalLinkService" zenodo-license-document="CC-BY-4.0" zenodo-license-figures="CC-BY-4.0" zenodo-license-treatments="UNSPECIFIED">
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<mods:title id="A1080A2404ACA1E80FCDE9F46CF42B04">New species, redescriptions and new records of deep-sea brittle stars (Echinodermata: Ophiuroidea) from the South China Sea, an integrated morphological and molecular approach</mods:title>
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<mods:roleTerm id="F35A9D6B1F32F921F645DF52EF00D008">Author</mods:roleTerm>
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<mods:namePart id="6F650ECE02F4303B54937DC9BFC69383">Nethupul, Hasitha</mods:namePart>
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<mods:affiliation id="390FE7662B2E657A5148D08E3CF427FC">Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences, CAS, 57200 Sanya, China. & University of Chinese Academy of Sciences, Beijing 100039, China.</mods:affiliation>
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<mods:nameIdentifier id="5B8BF2D1EFA316F21DE87DF90605B498" type="email">Nethupul@idsse.ac.cn</mods:nameIdentifier>
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<mods:namePart id="BE171C2234D221EE68BF14E6FBE6F08D">Stöhr, Sabine</mods:namePart>
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<mods:affiliation id="ABD033311CCCE7D7E18D56233AC579BA">Swedish Museum of Natural History, Department of Zoology, Box 50007, 10405 Stockholm, Sweden.</mods:affiliation>
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<mods:nameIdentifier id="91FF2F874CD004542228FEE458313933" type="email">sabine.stohr@nrm.se</mods:nameIdentifier>
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<mods:namePart id="0369494C5735025B53640B8992C5E9EC">Zhang, Haibin</mods:namePart>
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<mods:affiliation id="E64AFB3DE7E9318630345B5D3182BECC">Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences, CAS, 57200 Sanya, China.</mods:affiliation>
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<mods:nameIdentifier id="5DA87EE43C85B1CEB0E6520FE02F69DE" type="email">hzhang@idsse.ac.cn</mods:nameIdentifier>
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<mods:title id="795EEDBCA0B3DE5D1CC7A37E336E58F2">European Journal of Taxonomy</mods:title>
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<mods:part id="501214E0DDC1472A44A58D00E8F85A2C">
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<mods:date id="DECA8F037F41DF16EAEB0C3C176AEAF8">2022</mods:date>
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<mods:number id="EFD66CB250AC130FCF5463089DC54B1B">2022-04-06</mods:number>
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<mods:number id="5195052F5C61C88313E148B9E91460CA">810</mods:number>
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<mods:identifier id="988FDA9710228E60D04D43EE6ED670C6" type="DOI">10.5852/ejt.2022.810.1723</mods:identifier>
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<mods:identifier id="C72A7C9F1F85FD08016DE7F9DBC6ECB0" type="GBIF-Dataset">58fbfe9f-852b-493c-9611-822354c5a2a8</mods:identifier>
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<mods:identifier id="AF7F536FE62AD5F855B8918D479D0344" type="ISSN">2118-9773</mods:identifier>
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<mods:identifier id="BCCB01F211CD041EBA873F9BA473596D" type="Zenodo-Dep">6419522</mods:identifier>
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<treatment id="487387A89B74FFF168992D795445C10F" LSID="urn:lsid:plazi:treatment:487387A89B74FFF168992D795445C10F" httpUri="http://treatment.plazi.org/id/487387A89B74FFF168992D795445C10F" lastPageId="74" lastPageNumber="74" pageId="73" pageNumber="74" scope_class="Ophiuroidea" scope_order="Amphilephidida" scope_phylum="Echinodermata" scope_superFamily="Ophiactoidea" scope_superOrder="Ophintegrida">
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<subSubSection id="88C065359B74FFF268992D7956ACC0C9" box="[189,478,1918,1944]" pageId="73" pageNumber="74" type="nomenclature">
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<paragraph id="C06536BE9B74FFF268992D7956ACC0C9" blockId="73.[189,1401,1918,2023]" box="[189,478,1918,1944]" pageId="73" pageNumber="74">
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<heading id="9B2D81D29B74FFF268992D7956ACC0C9" box="[189,478,1918,1944]" pageId="73" pageNumber="74">
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<emphasis id="F2AEEAAC9B74FFF268992D7956ACC0C9" bold="true" box="[189,478,1918,1944]" pageId="73" pageNumber="74">
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Family
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<taxonomicName id="07DA4D3D9B74FFF2693F2D7956ACC0C9" ID-CoL="7NG2P" authorityName="Ljungman" authorityYear="1867" box="[283,478,1918,1944]" class="Ophiuroidea" family="Asteronychidae" kingdom="Animalia" order="Euryalida" pageId="73" pageNumber="74" phylum="Echinodermata" rank="family">Asteronychidae</taxonomicName>
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</emphasis>
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</heading>
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</paragraph>
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</subSubSection>
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<subSubSection id="88C065359B74FFF168992DAE5445C10F" lastPageId="74" lastPageNumber="75" pageId="73" pageNumber="74" type="description">
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<paragraph id="C06536BE9B74FFF168992DAE5445C10F" blockId="73.[189,1401,1918,2023]" lastBlockId="74.[189,1399,1357,1630]" lastPageId="74" lastPageNumber="75" pageId="73" pageNumber="74">
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Final 581 bp partial COI and 443 bp partial 16S sequences were obtained after removing ambiguous aligned sites and successfully used in reconstructing a Maximum Likelihood (ML) tree from 16S (
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<specimenCount id="D6DCFD379B77FFF168E32F4A5628C239" box="[199,346,1357,1384]" pageId="74" pageNumber="75" type="generic">8 specimens</specimenCount>
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) and COI (
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<specimenCount id="D6DCFD379B77FFF169FB2F4A5504C239" box="[479,630,1357,1384]" pageId="74" pageNumber="75" type="generic">7 specimens</specimenCount>
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), respectively (
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<figureCitation id="58E12A3B9B77FFF16B0C2F4A54F3C236" box="[808,897,1357,1383]" captionStart="Fig" captionStartId="74.[190,233,1182,1208]" captionTargetBox="[190,1400,263,1163]" captionTargetId="figure-338@74.[183,1404,260,1172]" captionTargetPageId="74" captionText="Fig. 43. Family Asteronychidae Ljungman, 1867, Maximum likelihood (ML) trees based on partial 16S and COI sequences (bootstrap support values were generated with rapid bootstrapping algorithm for 1000 replicates). A. 16S ML. B. COI ML. Abbreviations: ECS = East China Sea; JP = Japan; SC = Sub-Clade; SCS = South China Sea." figureDoi="http://doi.org/10.5281/zenodo.6419625" httpUri="https://zenodo.org/record/6419625/files/figure.png" pageId="74" pageNumber="75">Fig. 43</figureCitation>
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). In the 16S ML tree, species of
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<taxonomicName id="07DA4D3D9B77FFF16D272F4A5205C236" authorityName="Muller & Troschel" authorityYear="1842" box="[1283,1399,1357,1383]" class="Ophiuroidea" family="Asteronychidae" genus="Asteronyx" kingdom="Animalia" order="Euryalida" pageId="74" pageNumber="75" phylum="Echinodermata" rank="genus">
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<emphasis id="F2AEEAAC9B77FFF16D272F4A5205C236" box="[1283,1399,1357,1383]" italics="true" pageId="74" pageNumber="75">Asteronyx</emphasis>
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</taxonomicName>
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were divided into two subclades (Sub-Clades 01 and 02). Sub-Clade 01 consists of
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<taxonomicName id="07DA4D3D9B77FFF16C952F77526EC2DB" authorityName="Muller & Troschel" authorityYear="1842" box="[1201,1308,1392,1418]" class="Ophiuroidea" family="Asteronychidae" genus="Asteronyx" kingdom="Animalia" order="Euryalida" pageId="74" pageNumber="75" phylum="Echinodermata" rank="species" species="loveni">
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<emphasis id="F2AEEAAC9B77FFF16C952F77526EC2DB" box="[1201,1308,1392,1418]" italics="true" pageId="74" pageNumber="75">A. loveni</emphasis>
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</taxonomicName>
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(
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<collectingCountry id="B8CD762E9B77FFF16D0F2F775200C2DB" box="[1323,1394,1392,1418]" name="Japan" pageId="74" pageNumber="75">Japan</collectingCountry>
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, East
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<collectingCountry id="B8CD762E9B77FFF168D82F945630C2FC" box="[252,322,1427,1453]" name="China" pageId="74" pageNumber="75">China</collectingCountry>
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Sea and South
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<collectingCountry id="B8CD762E9B77FFF16A272F94553BC2FC" box="[515,585,1427,1453]" name="China" pageId="74" pageNumber="75">China</collectingCountry>
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Sea) and
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<taxonomicName id="07DA4D3D9B77FFF16AE72F9453B4C2FF" authority="Doderlein, 1927" authorityName="Doderlein" authorityYear="1927" box="[707,1222,1427,1454]" class="Ophiuroidea" family="Asteronychidae" genus="Asteronyx" kingdom="Animalia" order="Euryalida" pageId="74" pageNumber="75" phylum="Echinodermata" rank="species" species="longifissus">
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<emphasis id="F2AEEAAC9B77FFF16AE72F945411C2FC" box="[707,867,1427,1453]" italics="true" pageId="74" pageNumber="75">A. longifissus</emphasis>
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<bibRefCitation id="A44B4B4F9B77FFF16B492F94535CC2FC" author="Doderlein L." box="[877,1070,1427,1453]" pageId="74" pageNumber="75" pagination="1 - 106" refId="ref37140" refString="Doderlein L. 1927. Indopacifische Euryalae. Abhandlungen der Bayerischen Akademie der Wissenschaften, Mathematisch-physikalische Klasse 31 (6): 1 - 106." type="journal article" year="1927">Döderlein, 1927</bibRefCitation>
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(California)
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</taxonomicName>
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. Sub-Clade 02 consists of
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<taxonomicName id="07DA4D3D9B77FFF169632FB056A9C281" authorityName="Okanishi, Martynov & Fujita" authorityYear="2018" box="[327,475,1462,1489]" class="Ophiuroidea" family="Asteronychidae" genus="Asteronyx" kingdom="Animalia" order="Euryalida" pageId="74" pageNumber="75" phylum="Echinodermata" rank="species" species="reticulata">
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<emphasis id="F2AEEAAC9B77FFF169632FB056A9C281" box="[327,475,1462,1489]" italics="true" pageId="74" pageNumber="75">A. reticulata</emphasis>
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</taxonomicName>
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(East
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<collectingCountry id="B8CD762E9B77FFF16A0F2FB15503C281" box="[555,625,1462,1488]" name="China" pageId="74" pageNumber="75">China</collectingCountry>
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Sea and
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<collectingCountry id="B8CD762E9B77FFF16AC02FB0545BC280" box="[740,809,1463,1489]" name="Japan" pageId="74" pageNumber="75">Japan</collectingCountry>
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) and
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<taxonomicName id="07DA4D3D9B77FFF16B4B2FB05373C281" authorityName="Doderlein" authorityYear="1927" box="[879,1025,1462,1489]" class="Ophiuroidea" family="Asteronychidae" genus="Asteronyx" kingdom="Animalia" order="Euryalida" pageId="74" pageNumber="75" phylum="Echinodermata" rank="species" species="luzonicus">
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<emphasis id="F2AEEAAC9B77FFF16B4B2FB05373C281" box="[879,1025,1462,1489]" italics="true" pageId="74" pageNumber="75">A. luzonicus</emphasis>
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</taxonomicName>
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(South
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<collectingCountry id="B8CD762E9B77FFF16C472FB153DBC281" box="[1123,1193,1462,1488]" name="China" pageId="74" pageNumber="75">China</collectingCountry>
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Sea) (
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<figureCitation id="58E12A3B9B77FFF16CDE2FB15219C281" box="[1274,1387,1462,1488]" captionStart="Fig" captionStartId="74.[190,233,1182,1208]" captionTargetBox="[190,1400,263,1163]" captionTargetId="figure-338@74.[183,1404,260,1172]" captionTargetPageId="74" captionText="Fig. 43. Family Asteronychidae Ljungman, 1867, Maximum likelihood (ML) trees based on partial 16S and COI sequences (bootstrap support values were generated with rapid bootstrapping algorithm for 1000 replicates). A. 16S ML. B. COI ML. Abbreviations: ECS = East China Sea; JP = Japan; SC = Sub-Clade; SCS = South China Sea." figureDoi="http://doi.org/10.5281/zenodo.6419625" httpUri="https://zenodo.org/record/6419625/files/figure.png" pageId="74" pageNumber="75">Fig. 43A</figureCitation>
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). Similar results were found in the COI ML tree (
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<figureCitation id="58E12A3B9B77FFF16B2A2FDE540CC2A5" box="[782,894,1497,1524]" captionStart="Fig" captionStartId="74.[190,233,1182,1208]" captionTargetBox="[190,1400,263,1163]" captionTargetId="figure-338@74.[183,1404,260,1172]" captionTargetPageId="74" captionText="Fig. 43. Family Asteronychidae Ljungman, 1867, Maximum likelihood (ML) trees based on partial 16S and COI sequences (bootstrap support values were generated with rapid bootstrapping algorithm for 1000 replicates). A. 16S ML. B. COI ML. Abbreviations: ECS = East China Sea; JP = Japan; SC = Sub-Clade; SCS = South China Sea." figureDoi="http://doi.org/10.5281/zenodo.6419625" httpUri="https://zenodo.org/record/6419625/files/figure.png" pageId="74" pageNumber="75">Fig. 43B</figureCitation>
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). Genetic distance values are provided in Suppl. file 1 and Suppl. file 2. Two samples of
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<taxonomicName id="07DA4D3D9B77FFF16AD82FFA54E2C146" authorityName="Okanishi, Martynov & Fujita" authorityYear="2018" box="[764,912,1533,1559]" class="Ophiuroidea" family="Asteronychidae" genus="Asteronyx" kingdom="Animalia" order="Euryalida" pageId="74" pageNumber="75" phylum="Echinodermata" rank="species" species="reticulata">
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<emphasis id="F2AEEAAC9B77FFF16AD82FFA54E2C146" box="[764,912,1533,1559]" italics="true" pageId="74" pageNumber="75">A. reticulata</emphasis>
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</taxonomicName>
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from
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<collectingCountry id="B8CD762E9B77FFF16BF92FFA5352C146" box="[989,1056,1533,1559]" name="Japan" pageId="74" pageNumber="75">Japan</collectingCountry>
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and the East
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<collectingCountry id="B8CD762E9B77FFF16CEC2FFA527CC146" box="[1224,1294,1533,1559]" name="China" pageId="74" pageNumber="75">China</collectingCountry>
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Sea had identical sequences and three samples of
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<taxonomicName id="07DA4D3D9B77FFF16A862C275478C16B" authorityName="Muller & Troschel" authorityYear="1842" box="[674,778,1568,1594]" class="Ophiuroidea" family="Asteronychidae" genus="Asteronyx" kingdom="Animalia" order="Euryalida" pageId="74" pageNumber="75" phylum="Echinodermata" rank="species" species="loveni">
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<emphasis id="F2AEEAAC9B77FFF16A862C275478C16B" box="[674,778,1568,1594]" italics="true" pageId="74" pageNumber="75">A. loveni</emphasis>
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</taxonomicName>
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from
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<collectingCountry id="B8CD762E9B77FFF16B762C2754EAC16B" box="[850,920,1568,1594]" name="Japan" pageId="74" pageNumber="75">Japan</collectingCountry>
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, the East
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<collectingCountry id="B8CD762E9B77FFF16C2D2C27533DC16B" box="[1033,1103,1568,1594]" name="China" pageId="74" pageNumber="75">China</collectingCountry>
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Sea and the South
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<collectingCountry id="B8CD762E9B77FFF16D152C275205C16B" box="[1329,1399,1568,1594]" name="China" pageId="74" pageNumber="75">China</collectingCountry>
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Sea also showed no sequence variation (Suppl. file 1).
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</paragraph>
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</subSubSection>
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</treatment>
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</document> |