231 lines
18 KiB
XML
231 lines
18 KiB
XML
<document id="807F08025BFEF3D958AC5B1961739D87" ID-DOI="10.3897/mycokeys.107.125549" ID-publisher-id="125549" URI-arpha="3EA0E723-E6FC-58B0-8491-ED4CC2FBAB87" XM.bibliography_approvedBy="admin" XM.materialsCitations_approvedBy="admin" XM.taxonomicNames_approvedBy="admin" XM.treatmentCitations_approvedBy="admin" XM.treatments_approvedBy="admin" article-type="research-article" checkinTime="1723223129036" checkinUser="pensoft" docAuthor="Tedersoo, Leho, Magurno, Franco, Alkahtani, Saad & Mikryukov, Vladimir" docDate="2024" docId="EB20E4EE572F53DB849A4606F20139EB" docLanguage="en" docName="MycoKeys 107: 249-271" docOrigin="MycoKeys 107" docSource="https://mycokeys.pensoft.net/article/125549/download/xml/" docStyle="DocumentStyle:PensoftTaxPub.0000.journal_article.mycokeys" docStyleName="PensoftTaxPub.0000.journal_article.mycokeys" docTitle="Kahvena rebeccae Tedersoo 2024, sp. nov." docType="treatment" docVersion="3" dtd-version="3.0" lastPageNumber="271" masterDocId="3EA0E723E6FC58B08491ED4CC2FBAB87" masterDocTitle="Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes)" masterLastPageNumber="271" masterPageNumber="249" pageNumber="249" updateTime="1723229325626" updateUser="admin">
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<mods:mods id="C86632D5D92704F2413DEC4FE763553E" xmlns:mods="http://www.loc.gov/mods/v3">
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<mods:titleInfo id="8998F4180535F1BE26B903FD83334BDF">
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<mods:title id="9F40C557DDA5CEB0FC09B346EA28BA58">Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes)</mods:title>
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</mods:titleInfo>
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<mods:name id="B1C7B059D967C4B0033BCD84B946D528" type="personal">
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<mods:role id="AB6A9D470F713328461D419A39B85D97">
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<mods:roleTerm id="1C5D55D62367822A27E553F524D21228">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="D4DB0DD857474A7021E2FCAB8B4B1BF2">Tedersoo, Leho</mods:namePart>
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<mods:affiliation id="ACAC39B35432CB04427CE9622A5ECCFF">Mycology and Microbiology Center, University of Tartu, 2 Liivi, 50409 Tartu, Estonia & Department of Zoology, College of Science, King Saud University, 12371 Riyadh, Saudi Arabia</mods:affiliation>
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</mods:name>
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<mods:name id="09123B9F97DCFEB4F2EF27064900C1D8" type="personal">
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<mods:role id="3325F8B5F72605BFDD7C4367AE4CBECF">
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<mods:roleTerm id="FA01B72251EF024E8B19CB4761D46FCA">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="6D58BF14672FF8AA74C76578AD8A8786">Magurno, Franco</mods:namePart>
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<mods:nameIdentifier id="B653182CB3D0BE44D21170094851999D" type="ORCID">0000-0002-3117-8149</mods:nameIdentifier>
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<mods:affiliation id="35BE658E69EB84F76372F0ADA78070D0">Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice, Jagiellońska 28, 40 - 032 Katowice, Poland</mods:affiliation>
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</mods:name>
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<mods:name id="180152DFD95A1A2AD494DDD234EA9155" type="personal">
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<mods:role id="80583CBF15BE83A917A442148E210D2A">
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<mods:roleTerm id="463FBF9541683E65483A80080114CEB1">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="01259FC0A7D9056D398708863140041B">Alkahtani, Saad</mods:namePart>
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<mods:nameIdentifier id="C7B70E7ABDB0B1D5D0CC29EA300C6454" type="ORCID">0000-0001-7381-5110</mods:nameIdentifier>
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<mods:affiliation id="996DA7042F3D7656B24D3B005A0F9C8F">Department of Zoology, College of Science, King Saud University, 12371 Riyadh, Saudi Arabia</mods:affiliation>
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</mods:name>
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<mods:name id="E2209FEE622173E394384888FA525390" type="personal">
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<mods:roleTerm id="4422FAB238ABF3F1EA0FCAC570DEAFDA">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="9F6DD216AF70F87A85201A729EDD23D1">Mikryukov, Vladimir</mods:namePart>
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<mods:nameIdentifier id="369058C9BE7F072F33A5485C0CFCC2E3" type="ORCID">0000-0003-2786-2690</mods:nameIdentifier>
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<mods:affiliation id="6D3E9B362B7C36DFBB08027BAA8C14A9">Mycology and Microbiology Center, University of Tartu, 2 Liivi, 50409 Tartu, Estonia</mods:affiliation>
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</mods:name>
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<mods:typeOfResource id="D1FC842F6FC43DD529B530E541EFA24D">text</mods:typeOfResource>
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<mods:titleInfo id="F5947C46E6BA38BF2CA50BE0E535E80B">
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<mods:title id="26EC86B868F6035F56D79100D43E126D">MycoKeys</mods:title>
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</mods:titleInfo>
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<mods:part id="FC5C9D0F535CE06F645912C882897E65">
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<mods:date id="86FE40B9DE86A351F26B1691D092164E">2024</mods:date>
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<mods:detail id="6DB7412650689E70BC9DAE22F09BB09C" type="pubDate">
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<mods:number id="6710C7B5B5F79E65367C2CCC50DB2900">2024-08-09</mods:number>
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</mods:detail>
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<mods:detail id="2647177D5AE8FA230B1A9E9ABB74F133" type="volume">
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<mods:number id="064020759CAC5F059CB3484FB1FC0C70">107</mods:number>
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</mods:detail>
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<mods:extent id="B621A5E0712539E8EBEFDB1A399606E1" unit="page">
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<mods:start id="0CC61FF8DC9FE0A80376B33623F4A07E">249</mods:start>
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<mods:end id="F151B13E9E16E9B121CD6CEB60C7911E">271</mods:end>
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</mods:extent>
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</mods:part>
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<mods:classification id="F8857FF88BE5717560BC579B0A6101C5">journal article</mods:classification>
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<mods:identifier id="EFB684AF763E67F886B4D2D8AF9B155F" type="DOI">10.3897/mycokeys.107.125549</mods:identifier>
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</mods:mods>
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<treatment id="EB20E4EE572F53DB849A4606F20139EB" ID-DOI="http://doi.org/10.5281/zenodo.13286488" ID-Zenodo-Dep="13286488" ID-arpha="EB20E4EE-572F-53DB-849A-4606F20139EB" ID-mycobank="853575" LSID="urn:lsid:plazi:treatment:EB20E4EE572F53DB849A4606F20139EB" httpUri="http://treatment.plazi.org/id/EB20E4EE572F53DB849A4606F20139EB">
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||
<subSubSection id="229076B3C794FD8D1FD58A8E3F2C5FC2" type="nomenclature">
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<paragraph id="CCC4F00C3469282213F3430EBD409610">
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<taxonomicName id="419460B9CF91609436CD4DCDF4D8F290" authority="Tedersoo" authorityName="Tedersoo" authorityYear="2024" class="Magnoliopsida" family="Kahvenaceae" genus="Kahvena" kingdom="Fungi" order="Kahvenales" phylum="Tracheophyta" rank="species" species="rebeccae" status="sp. nov.">
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<emphasis id="1C67F46A51C656D0A50E836ECDCB42C9" italics="true">Kahvena rebeccae</emphasis>
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Tedersoo
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</taxonomicName>
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<taxonomicNameLabel id="46ECDA84C3CFD95B54950132A5301C39" rank="species">sp. nov.</taxonomicNameLabel>
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</paragraph>
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||
</subSubSection>
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||
<subSubSection id="SECID0ENYAI" type="diagnosis">
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<paragraph id="0629E8BD7D000970F858108442916C2E">
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<heading id="422F9EAE2A87EE97A19FBB7586345F19" reason="title">Diagnosis.</heading>
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</paragraph>
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<paragraph id="F9373E1C4D5BCB44B05B5451533BD2E4">
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Separation from other species of
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<taxonomicName id="2F55617DBC8F6DC52732F9F63E9B7C86" class="Magnoliopsida" family="Dipterocarpaceae" genus="Kahvena" kingdom="Plantae" order="Malvales" phylum="Tracheophyta" rank="genus">
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<emphasis id="990ADB701D3C7E21541789AD81CF7279" italics="true">Kahvena</emphasis>
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</taxonomicName>
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based on the
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<abbrev id="ABBRID0E1YAI" xlink_title="internal transcribed spacer">ITS</abbrev>
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region (ITS 2 positions 200–218 cattcgcaggaatagccag; one mismatch allowed) and from other species of
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<taxonomicName id="1F7A77CB09614C40AAA08C6688D7E219" class="Endogonomycetes" higherTaxonomySource="CoL,GBIF" kingdom="Fungi" phylum="Mucoromycota" rank="class">Endogonomycetes</taxonomicName>
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based on LSU (positions 653–683 acgcaagctccagatcgaatctccgggctaa; one mismatch allowed) as indicated in Fig.
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<figureCitation id="D5F9737581610B6C07B45816D78957A2" captionStart="Figure 5" captionStartId="F5" captionText="Figure 5. Diagnostic barcodes for Kahvena rebeccae relative to closely-related taxa in ITS 2 and LSU." figureDoi="10.3897/mycokeys.107.125549.figure5" httpUri="https://binary.pensoft.net/fig/1111392">5</figureCitation>
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.
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||
</paragraph>
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||
<caption id="5674FBE8AB6072B8E906CD4C38FD6CB3" ID-DOI="10.3897/mycokeys.107.125549.figure5" ID-arpha="3D790374-2F19-5B7A-B75C-A2C2A8ED8EC2" httpUri="https://binary.pensoft.net/fig/1111392" startId="F5">
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||
<paragraph id="0CB840370EF5F39520796673B94704A8">
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<label id="44F771E45D0CB2399B7DE64227D1D6F0">Figure 5.</label>
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</paragraph>
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<paragraph id="446FC4348C929C0B6716B9E738BB5074">
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Diagnostic barcodes for
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<taxonomicName id="6E4392D01B9C3B148C585CAD41461CB0" class="Magnoliopsida" family="Dipterocarpaceae" genus="Kahvena" kingdom="Plantae" order="Malvales" phylum="Tracheophyta" rank="species" species="rebeccae">
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<emphasis id="5B3745B4FA91F054814A0D883F72AEAA" italics="true">Kahvena rebeccae</emphasis>
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</taxonomicName>
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relative to closely-related taxa in ITS 2 and LSU.
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</paragraph>
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</caption>
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</subSubSection>
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<subSubSection id="SECID0EA1AI" type="material">
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||
<paragraph id="3C01C8BFA23902828F36A92E7D07EDE5">
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<heading id="574F6A3F14B350635EAF448166F26A96" reason="title">Type.</heading>
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</paragraph>
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<paragraph id="7E3C4AB4BC7AFFB57A0EBF93AE51E4F3">
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<materialsCitation id="CD2A7C5738C7D005D16F20734A886067" collectedFrom="Populus - Picea - Pinus forest" collectionCode="TUE, EUK" country="Estonia" latitude="58.27991" location="Kahvena" longLatPrecision="1" longitude="25.23165" specimenCode="TUE 100738, EUK 1634339, TUE 000738" specimenCount="2" typeStatus="holotype">
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Soil
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<abbrev id="ABBRID0EG1AI" xlink_title="environmental DNA">eDNA</abbrev>
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sample
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<specimenCode id="81DE6F8125B2FA24B74859F6AE9D13C4">TUE 100738</specimenCode>
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(
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<emphasis id="024534C3B5EED457DA1DA2AA398E6039" bold="true" italics="true">
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<typeStatus id="3751FEA66383CB83E731C50A4EBAA075" type="holotype">holotype</typeStatus>
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</emphasis>
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);
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<abbrev id="ABBRID0EN1AI" xlink_title="environmental DNA">eDNA</abbrev>
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sequence
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<specimenCode id="D3F58C6CB17811AB83A2DE74FE8C6B98">EUK 1634339</specimenCode>
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(
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<emphasis id="9DA78F8D16C499A71304E0E28B2B3E6F" bold="true" italics="true">
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<typeStatus id="3E40671318B451DF930A5DBF979E92AF" type="lectotype">lectotype</typeStatus>
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</emphasis>
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);
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<abbrev id="ABBRID0EU1AI" xlink_title="Global Soil Mycobiome consortium">GSMc</abbrev>
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plot G 4196,
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<collectedFrom id="0307D01EA96BA49520B64EA723206097">
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<emphasis id="26F63787CBD0EFFE5B697270AE2DB6BC" italics="true">
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<taxonomicName id="B3B43B45158680DEA1445DEBEEAF18DA" class="Magnoliopsida" family="Salicaceae" genus="Populus" kingdom="Plantae" order="Malpighiales" phylum="Tracheophyta" rank="genus">Populus</taxonomicName>
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-
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<taxonomicName id="AEFCE32A063755AE4AAA86D44C4312DA" class="Pinopsida" family="Pinaceae" genus="Picea" kingdom="Plantae" order="Pinales" phylum="Tracheophyta" rank="genus">Picea</taxonomicName>
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-
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<taxonomicName id="FCBE5FA37EFE08F0F0BBCB668936EADA" authorityName="Perry" authorityYear="1811" class="Pinopsida" family="Pinaceae" genus="Pinus" kingdom="Plantae" order="Pinales" phylum="Tracheophyta" rank="genus">Pinus</taxonomicName>
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</emphasis>
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forest
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</collectedFrom>
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(soil sample
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<specimenCode id="953AD3226390A8D88D62CAB19FC020C2">TUE 000738</specimenCode>
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) in
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<taxonomicName id="61D0F9BDCE3887D0E78E9EA5B1709D55" class="Magnoliopsida" family="Dipterocarpaceae" genus="Kahvena" kingdom="Plantae" order="Malvales" phylum="Tracheophyta" rank="genus">
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<emphasis id="614BEEEDEDE79F55B1F0B1CE0E34ABA7" italics="true">
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<location id="AF422D182E86C7AA6181A1E86D1F1C22" LSID="urn:lsid:plazi:treatment:EB20E4EE572F53DB849A4606F20139EB:AF422D182E86C7AA6181A1E86D1F1C22" country="Estonia" latitude="58.27991" longLatPrecision="1" longitude="25.23165" name="Kahvena">Kahvena</location>
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</emphasis>
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</taxonomicName>
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,
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<collectingCountry id="B01B5206A1638C8F2F9DCE25BCC0CE70" name="Estonia">Estonia</collectingCountry>
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(
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<named-content content-type="dwc:verbatimCoordinates" id="NCID0EU2AI" specific-use="{"type":"Point","coordinates":[25.231650,58.279910]}">
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<geoCoordinate id="7EB944E6F89815DDE2962CD8F919B5EB" degrees="58.27991" direction="north" orientation="latitude" precision="1" value="58.27991">58.27991 ° N</geoCoordinate>
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,
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<geoCoordinate id="2C6CED9FF0B996C3504E12228F314BAD" degrees="25.23165" direction="east" orientation="longitude" precision="1" value="25.23165">25.23165 ° E</geoCoordinate>
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</named-content>
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)
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</materialsCitation>
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.
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</paragraph>
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</subSubSection>
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<subSubSection id="SECID0EZ2AI" type="description">
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<paragraph id="7F5C0683167181C433D42A097C691AAA">
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<heading id="6B91F85EE4AD68D6A7D0ED2D304C28B3" reason="title">Description.</heading>
|
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</paragraph>
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<paragraph id="7514CD0A96C78C9EE9266A2BE2BEFBA5">
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Other sequences: EUK 1635883 – EUK 1635886 (type locality); EUK 1631811 (
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<abbrev id="ABBRID0E62AI" xlink_title="Global Soil Mycobiome consortium">GSMc</abbrev>
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plot G 2767, mixed woodland soil at Mäebe,
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<collectingCountry id="034F2AA3FBD8B26ABF0DAD87494F077B" name="Estonia">Estonia</collectingCountry>
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,
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<named-content content-type="dwc:verbatimCoordinates" id="NCID0EG3AI" specific-use="{"type":"Point","coordinates":[22.076180,58.309370]}">
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<geoCoordinate id="4243B74830BD6B48CF99C1B19D8D2556" degrees="58.30937" direction="north" orientation="latitude" precision="1" value="58.30937">58.30937 ° N</geoCoordinate>
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,
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<geoCoordinate id="A6EE8EAB91ECC36303C00D5FCF91E73C" degrees="22.07618" direction="east" orientation="longitude" precision="1" value="22.07618">22.07618 ° E</geoCoordinate>
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</named-content>
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||
);
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<ext-link id="6164943F332F6C0006213583050C6B1A" ext-link-type="gen" xlink_href="KF618358" xlink_type="simple">KF 618358</ext-link>
|
||
(
|
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<taxonomicName id="E6290542D5B8EF0872563F69E1516FFD" class="Pinopsida" family="Pinaceae" genus="Picea" kingdom="Plantae" order="Pinales" phylum="Tracheophyta" rank="species" species="mariana">
|
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<emphasis id="80AB5E0524EED0B8FC0EA1A4D0729AE7" italics="true">Picea mariana</emphasis>
|
||
</taxonomicName>
|
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forest soil, AK,
|
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<collectingCountry id="B79B1D54030B74A19523B34D9315D55C" name="United States of America">USA</collectingCountry>
|
||
);
|
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<ext-link id="E213EFD1EE4C7D7A7A352C7E776CA91D" ext-link-type="gen" xlink_href="MT596306" xlink_type="simple">MT 596306</ext-link>
|
||
(Tobiotsuka Kofun,
|
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<collectingCountry id="A0A2AC211161214E196E74802C406DDE" name="Japan">Japan</collectingCountry>
|
||
,
|
||
<named-content content-type="dwc:verbatimCoordinates" id="NCID0ED4AI" specific-use="{"type":"Point","coordinates":[133.681400,34.635500]}">
|
||
<geoCoordinate id="E1C3F4BBA5FE4D4A30CA0B7C8979F2E9" degrees="34.6355" direction="north" orientation="latitude" precision="5" value="34.6355">34.6355 ° N</geoCoordinate>
|
||
,
|
||
<geoCoordinate id="E0F2CC3800DFCE0E240303AC8F02C4EE" degrees="133.6814" direction="east" orientation="longitude" precision="5" value="133.6814">133.6814 ° E</geoCoordinate>
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||
</named-content>
|
||
);
|
||
<ext-link id="1FBB21077CAE6A0C63BAF4A6E68ED911" ext-link-type="gen" xlink_href="KU062529" xlink_type="simple">KU 062529</ext-link>
|
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(unknown source); and
|
||
<ext-link id="C3D2A39566A7B3B0223CD6630608BE41" ext-link-type="gen" xlink_href="KF565426" xlink_type="simple">KF 565426</ext-link>
|
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(Duke Forest, NC,
|
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<collectingCountry id="DD6EDD66BBC8FA5423FFBF7AB8172778" name="United States of America">USA</collectingCountry>
|
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,
|
||
<named-content content-type="dwc:verbatimCoordinates" id="NCID0EV4AI" specific-use="{"type":"Point","coordinates":[79.090000,35.970000]}">
|
||
<geoCoordinate id="504427E5E3E80C62D698899D8B83591B" degrees="35.97" direction="north" orientation="latitude" precision="555" value="35.97">35.97 ° N</geoCoordinate>
|
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, -
|
||
<geoCoordinate id="624DD8F6749FF6D1A9A90CAC64B18BD8" degrees="79.09" direction="east" orientation="longitude" precision="555" value="79.09">79.09 ° E</geoCoordinate>
|
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</named-content>
|
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), isolated by Rebecca C. Mueller (
|
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<bibRefCitation id="A48427A1E0724D23A89EF70AC431C0C7" DOI="10.1111/mec.12858" author="Mueller" etAl="et al." firstAuthor="Mueller" issue="17" journalOrPublisher="Molecular Ecology" pagination="4406-4417" refId="B55" refString="Mueller RC, Balasch MM, Kuske CL (2014) Contrasting soil fungal community responses to experimental nitrogen addition using the large subunit rRNA taxonomic marker and cellobiohydrolase I functional marker. Molecular Ecology 23 (17): 4406–4417. https://doi.org/10.1111/mec.12858" title="Contrasting soil fungal community responses to experimental nitrogen addition using the large subunit rRNA taxonomic marker and cellobiohydrolase I functional marker." volume="23" year="2014">Mueller et al. 2014</bibRefCitation>
|
||
).
|
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</paragraph>
|
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</subSubSection>
|
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<subSubSection id="SECID0EE5AI" type="etymology">
|
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<paragraph id="3FCFA9C1F1CF31A81506BDCE112FD8B9">
|
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<heading id="088CF3DCAD6CCB5A389928E457CC089B" reason="title">Etymology.</heading>
|
||
</paragraph>
|
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<paragraph id="4E5A0EB0BE68EFDB67FBF469D322C513">
|
||
<emphasis id="DD2F57A25496C3CB31AA358595EDC235" italics="true">Kahvena</emphasis>
|
||
(Estonian) refers to type locality; and
|
||
<emphasis id="487B37E842DDB70581600C97419291DA" italics="true">Rebecca</emphasis>
|
||
(English) refers to the first name of Rebecca C. Mueller, who collected the first materials belonging to this genus and the type species.
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="SECID0E55AI" type="notes">
|
||
<paragraph id="7F281CD27F3551AD6CBD6340B71EAA7D">
|
||
<heading id="04371DD51B7E0655A612DE2008745855" reason="title">Notes.</heading>
|
||
</paragraph>
|
||
<paragraph id="ECDE75F7E864B0D016E5193F5156EFC9">
|
||
Found from temperate and subarctic forests in Europe, Asia and North America, with
|
||
<abbrev id="ABBRID0EE6AI" xlink_title="internal transcribed spacer">ITS</abbrev>
|
||
and LSU sequences differing up to 4 % (excluding a 29 - base deletion in EUK 1631811 and
|
||
<ext-link id="F7FEC4555F452DC51B003226E5E7926A" ext-link-type="gen" xlink_href="KU062529" xlink_type="simple">KU 062529</ext-link>
|
||
) and 1.5 %, respectively. Considered as a single species because of high intraspecific variation amongst common sequence variants in the type locality (2 % in
|
||
<abbrev id="ABBRID0EN6AI" xlink_title="internal transcribed spacer">ITS</abbrev>
|
||
and 1 % in LSU, representing both indels and substitutions).
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |