205 lines
20 KiB
XML
205 lines
20 KiB
XML
<document id="857A822432F3FB2514ACB0AC89FD02EA" ID-CLB-Dataset="20683" ID-DOI="10.1099/ijsem.0.002405" ID-GBIF-Dataset="76e0a39f-12c8-4a82-8c0b-7a3ce1d95a60" ID-ISSN="1466-5034" ID-Zenodo-Dep="6048406" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_requiresApprovalFor="existingObjects,plazi" IM.taxonomicNames_approvedBy="felipe" checkinTime="1644596770692" checkinUser="felipe" docAuthor="Moya, Gabriela, Yan, Zheng-Fei, Chu, Dong-Hun, Won, KyungHwa, Yang, Jung-Eun, Wang, Qi-Jun, Kook, Moo-Chang & Yi, Tae-Hoo" docDate="2018" docId="03FE87A4FF987A23C328BA98FF62FCF0" docLanguage="en" docName="IntJSystEvolMicrobiol.68.1.28-34.pdf" docOrigin="International Journal of Systematic and Evolutionary Microbiology 68 (1)" docSource="http://dx.doi.org/10.1099/ijsem.0.002405" docStyle="DocumentStyle:C64F0A4F4C66F6FC2AD4ED89351C6242.3:IntJSystEvolMicrobiol.2017-.journal_article" docStyleId="C64F0A4F4C66F6FC2AD4ED89351C6242" docStyleName="IntJSystEvolMicrobiol.2017-.journal_article" docStyleVersion="3" docTitle="Deinococcus hibisci Moya & Yan & Chu & Won & Yang & Wang & Kook & Yi 2018, SP. NOV." docType="treatment" docVersion="9" lastPageNumber="33" masterDocId="FFC7FFDCFF9C7A26C013B82CFFDDFFBC" masterDocTitle="Deinococcus hibisci sp. nov., isolated from rhizosphere of Hibiscus syriacus L. (mugunghwa flower)" masterLastPageNumber="34" masterPageNumber="28" pageNumber="32" updateTime="1702001993379" updateUser="plazi">
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<mods:title id="0D0EF6567DFF043F27030D6930078833">Deinococcus hibisci sp. nov., isolated from rhizosphere of Hibiscus syriacus L. (mugunghwa flower)</mods:title>
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<mods:namePart id="8A5C102F2E7D0B89E4C29D87075D22F0">Moya, Gabriela</mods:namePart>
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<mods:namePart id="FDB32A2FE5DA2434BAFCD94C02368E36">Yan, Zheng-Fei</mods:namePart>
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<mods:namePart id="630608A0362B5C19143691DB43FE6DC1">Chu, Dong-Hun</mods:namePart>
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<mods:namePart id="8D30E9087EEC650D05B2412FCADC8141">Won, KyungHwa</mods:namePart>
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<mods:namePart id="ADB2685CDC46F36358C7E16CC99628F4">Yang, Jung-Eun</mods:namePart>
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<mods:namePart id="416C6A33835B8574493BD52F3E7FE34F">Wang, Qi-Jun</mods:namePart>
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<mods:namePart id="E25480F90B8E1418789F60DF4760439A">Kook, Moo-Chang</mods:namePart>
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<mods:namePart id="7E34571E24D12C2E96A73505B261E195">Yi, Tae-Hoo</mods:namePart>
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<mods:title id="7264994D3AEBF11E3E8389984BF4C21B">International Journal of Systematic and Evolutionary Microbiology</mods:title>
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<mods:part id="7A6671B4F685BC82978F1BBCC642EEE4">
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<mods:date id="050FFF83D3896C1DD2438A8E22FFD187">2018</mods:date>
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<mods:number id="0C7EE19585C38855893E4A4F69BEB8C2">2018-01-01</mods:number>
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<mods:number id="77BDBA408A298E4308132618E442900A">68</mods:number>
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<mods:start id="CDEA54CD727F8CBC1256DDB16FF36687">28</mods:start>
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<mods:url id="32A20C38028BBE2F78939075ED620CC1">http://dx.doi.org/10.1099/ijsem.0.002405</mods:url>
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<mods:identifier id="75CA341709C71E44620051A7501AC09D" type="DOI">10.1099/ijsem.0.002405</mods:identifier>
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<mods:identifier id="6815F6688F043F9CA69DD4275D44433F" type="ISSN">1466-5034</mods:identifier>
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<mods:identifier id="0EC0A778220B7F56AF1BE8053396BB45" type="Zenodo-Dep">6048406</mods:identifier>
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<treatment id="03FE87A4FF987A23C328BA98FF62FCF0" ID-DOI="http://doi.org/10.5281/zenodo.6309502" ID-GBIF-Taxon="193364913" ID-Zenodo-Dep="6309502" LSID="urn:lsid:plazi:treatment:03FE87A4FF987A23C328BA98FF62FCF0" httpUri="http://treatment.plazi.org/id/03FE87A4FF987A23C328BA98FF62FCF0" lastPageId="5" lastPageNumber="33" pageId="4" pageNumber="32">
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<subSubSection id="C34D6539FF987A22C328BA98FC6BFD4A" pageId="4" pageNumber="32" type="nomenclature">
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<paragraph id="8BE836B2FF987A22C328BA98FC6BFD4A" blockId="4.[827,1465,692,1949]" pageId="4" pageNumber="32">
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<heading id="D0A081DEFF987A22C328BA98FC6BFD4A" allCaps="true" bold="true" fontSize="12" level="2" pageId="4" pageNumber="32" reason="3">
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<emphasis id="B923EAA0FF987A22C328BA98FC6BFD4A" bold="true" pageId="4" pageNumber="32">
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DESCRIPTION OF
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<taxonomicName id="4C574D31FF987A22C423BA98FA83FD6D" authority="Moya & Yan & Chu & Won & Yang & Wang & Kook & Yi, 2018" authorityName="Moya & Yan & Chu & Won & Yang & Wang & Kook & Yi" authorityYear="2018" box="[1072,1374,692,721]" class="Deinococci" family="Deinococcaceae" genus="Deinococcus" kingdom="Bacteria" order="Deinococcales" pageId="4" pageNumber="32" phylum="Deinococcus-Thermus" rank="species" species="hibisci" status="sp. nov.">
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<emphasis id="B923EAA0FF987A22C423BA98FA83FD6D" bold="true" box="[1072,1374,692,721]" italics="true" pageId="4" pageNumber="32">DEINOCOCCUS HIBISCI</emphasis>
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</taxonomicName>
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<taxonomicNameLabel id="A21057DBFF987A22C328BAF5FC6BFD4A" box="[827,950,729,758]" pageId="4" pageNumber="32" rank="species">SP. NOV.</taxonomicNameLabel>
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</emphasis>
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</heading>
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</paragraph>
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</subSubSection>
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<subSubSection id="C34D6539FF987A22C328BB2AFC3BFC80" pageId="4" pageNumber="32" type="etymology">
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<paragraph id="8BE836B2FF987A22C328BB2AFC3BFC80" blockId="4.[827,1465,692,1949]" pageId="4" pageNumber="32">
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<taxonomicName id="4C574D31FF987A22C328BB2AFBD5FCA2" authorityName="Moya & Yan & Chu & Won & Yang & Wang & Kook & Yi" authorityYear="2018" box="[827,1032,774,798]" class="Deinococci" family="Deinococcaceae" genus="Deinococcus" kingdom="Bacteria" order="Deinococcales" pageId="4" pageNumber="32" phylum="Deinococcus-Thermus" rank="species" species="hibisci">
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<emphasis id="B923EAA0FF987A22C328BB2AFBD5FCA2" box="[827,1032,774,798]" italics="true" pageId="4" pageNumber="32">Deinococcus hibisci</emphasis>
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</taxonomicName>
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(hi.bis′ ci. L. gen. n.
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<taxonomicName id="4C574D31FF987A22C4FFBB2AFAF2FCA2" authorityName="Moya & Yan & Chu & Won & Yang & Wang & Kook & Yi" authorityYear="2018" box="[1260,1327,774,798]" class="Deinococci" family="Deinococcaceae" genus="Deinococcus" kingdom="Bacteria" order="Deinococcales" pageId="4" pageNumber="32" phylum="Deinococcus-Thermus" rank="species" species="hibisci">
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<emphasis id="B923EAA0FF987A22C4FFBB2AFAF2FCA2" box="[1260,1327,774,798]" italics="true" pageId="4" pageNumber="32">hibisci</emphasis>
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</taxonomicName>
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of the plant genus
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<taxonomicName id="4C574D31FF987A22C36DBB08FC0AFC80" box="[894,983,804,828]" class="Magnoliopsida" family="Malvaceae" genus="Hibiscus" kingdom="Plantae" order="Malvales" pageId="4" pageNumber="32" phylum="Tracheophyta" rank="genus">
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<emphasis id="B923EAA0FF987A22C36DBB08FC0AFC80" box="[894,983,804,828]" italics="true" pageId="4" pageNumber="32">Hibiscus</emphasis>
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</taxonomicName>
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).
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</paragraph>
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||
</subSubSection>
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||
<subSubSection id="C34D6539FF987A23C328BB7FFF62FCF0" lastPageId="5" lastPageNumber="33" pageId="4" pageNumber="32" type="description">
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<paragraph id="8BE836B2FF987A23C328BB7FFF10FD1D" blockId="4.[827,1465,692,1949]" lastBlockId="5.[121,759,182,844]" lastPageId="5" lastPageNumber="33" pageId="4" pageNumber="32">
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Cells are Gram-positive cocci, 2.7–1.9×1.3–0.9 µm, strictly aerobic and non-motile. Colonies are smooth, bright, flat, circular, pink-coloured and
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<quantity id="4CAF9B57FF987A22C47EBBBCFB35FC14" box="[1133,1256,912,937]" metricMagnitude="-4" metricUnit="m" metricValue="6.5" metricValueMax="8.0" metricValueMin="5.0" pageId="4" pageNumber="32" unit="mm" value="0.65" valueMax="0.8" valueMin="0.5">0.5–0.8 mm</quantity>
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in diameter. Catalase and oxidase activities are positive. Flexirubin-type pigments are not produced. Can grow in TSB at 15–38
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<superScript id="7C229BFAFF987A22C58ABBE5FA7DFC6A" attach="right" box="[1433,1440,969,982]" fontSize="6" pageId="4" pageNumber="32">Ǫ</superScript>
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C, optimum growth occurs from 25–30
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<superScript id="7C229BFAFF987A22C4DFBBC4FB0EFC49" attach="right" box="[1228,1235,1000,1013]" fontSize="6" pageId="4" pageNumber="32">Ǫ</superScript>
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C. Growth occurs on R2A, TSA and NA agar, grows weakly on LA and MacConkey agar but not on MA. Strain THG-AG1.5
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<superScript id="7C229BFAFF987A22C531BC0FFAF3FB88" attach="left" box="[1314,1326,1059,1076]" fontSize="7" pageId="4" pageNumber="32">T</superScript>
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can grow in TSB at pH 6.0–8.5 (optimum 6.5–7.5) and in the presence of additional 0–1.5 % (w/v) NaCl. Cells are able to hydrolyse Tween 80 and CMC but not L- tyrosine, casein, chitin, starch and DNA. Positive for alkaline phosphatase, esterase (C4), esterase lipase (C8), leucine arylamidase, valine arylamidase, cystine arylamidase, trypsin, a- chymotrypsin, acid phosphatase, naphthol-AS-BI-phosphohydrolase, b
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<emphasis id="B923EAA0FF987A22C558BD2DFA89FAA4" box="[1355,1364,1281,1304]" italics="true" pageId="4" pageNumber="32">-</emphasis>
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galactosidase, a- glucosidase and b- glucosidase; weakly positive for lipase (C14); negative for a- galactosidase, b- glucuronidase,
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<emphasis id="B923EAA0FF987A22C328BD71FC93FAC8" box="[827,846,1373,1396]" italics="true" pageId="4" pageNumber="32">N</emphasis>
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-acetyl-b- glucosaminidase, a- mannosidase and a- fucosidase. Positive for reduction of nitrate to nitrites, assimilation of PNPG, arginine dihydrolase, D- glucose, L- arabinose, D- mannose, D- mannitol, maltose, and hydrolysis of urea, aesculin and gelatin; weakly positive for trisodium citrate; negative for indole production, glucose acidification, assimilation of
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<emphasis id="B923EAA0FF987A22C38CBE39FC67F990" box="[927,954,1557,1580]" italics="true" pageId="4" pageNumber="32">N-</emphasis>
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acetyl-glucosamine, gluconate, caprate, adipate, malate and phenyl-acetate. Positive for utilization of salicin, melibiose, D- sorbitol, L- histidine, 2-ketogluconate, 3- hydroxy-butyrate, L- proline, sucrose, L- alanine and glycogen; weakly positive for valerate, D- ribose, itaconate, sodium malonate, sodium acetate and
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<subScript id="17D334F7FF987A22C4BEBE98FB0CF97A" attach="right" box="[1197,1233,1710,1734]" fontSize="7" pageId="4" pageNumber="32">D,L-</subScript>
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lactate; negative for L- fucose, propionate, 4-hydroxy-benzoate, L- rhamnose, inositol, suberate, 5-ketogluconate, 3-hydroxy-benzoate and L- serine. Weakly positive for assimilation of glycerol, D- fructose and trehalose; negative for erythritol, D- arabinose, D- xylose, L- xylose, D- adonitol, methyl b- D- xylopyranoside,
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<subScript id="17D334F7FF987A22C328BF40FC8DF8C2" attach="none" box="[827,848,1894,1918]" fontSize="7" pageId="4" pageNumber="32">D-</subScript>
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galactose,
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<subScript id="17D334F7FF987A22C3D2BF40FC0EF8C2" attach="right" box="[961,979,1894,1918]" fontSize="7" pageId="4" pageNumber="32">L-</subScript>
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sorbose, dulcitol, methyl a-
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<subScript id="17D334F7FF987A22C512BF40FACBF8C2" attach="right" box="[1281,1302,1894,1918]" fontSize="7" pageId="4" pageNumber="32">D-</subScript>
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mannopyranoside, methyl a- D- glucopyranoside,
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<emphasis id="B923EAA0FF987A22C4A7BFA9FB1AF820" box="[1204,1223,1925,1948]" italics="true" pageId="4" pageNumber="32">N</emphasis>
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-acetyl-D- glucosamine, amygdalin, arbutin, cellobiose, lactose, inulin, melezitose, raffinose, xylitol, gentiobiose, D- turanose, D- lyxose, D- tagatose, D- fucose, D- arabitol and L- arabitol. The predominant respiratory quinone is menaquinone-8 (MK-8); and iso-C
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<subScript id="17D334F7FF997A23C099B911FF6FFEF2" attach="left" box="[138,178,317,334]" fontSize="7" pageId="5" pageNumber="33">15: 0</subScript>
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, C
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<subScript id="17D334F7FF997A23C0C2B911FF24FEF2" attach="both" box="[209,249,317,334]" fontSize="7" pageId="5" pageNumber="33">15: 1</subScript>
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<emphasis id="B923EAA0FF997A23C0EAB915FED4FEF7" box="[249,265,313,331]" italics="true" pageId="5" pageNumber="33">Ɯ</emphasis>
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6
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<emphasis id="B923EAA0FF997A23C105B918FEFDFEF7" box="[278,288,308,331]" italics="true" pageId="5" pageNumber="33">c</emphasis>
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, C
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<subScript id="17D334F7FF997A23C12CB911FEBAFEF2" attach="left" box="[319,359,317,334]" fontSize="7" pageId="5" pageNumber="33">16: 0</subScript>
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, iso-C
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<subScript id="17D334F7FF997A23C1BDB911FE0BFEF2" attach="left" box="[430,470,317,334]" fontSize="7" pageId="5" pageNumber="33">17: 0</subScript>
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, C
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<subScript id="17D334F7FF997A23C1E7B911FDC0FEF2" attach="left" box="[500,541,317,334]" fontSize="7" pageId="5" pageNumber="33">17: 0</subScript>
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, C
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<subScript id="17D334F7FF997A23C228B911FDB9FEF2" attach="left" box="[571,612,317,334]" fontSize="7" pageId="5" pageNumber="33">18: 0</subScript>
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and summed feature 3 (C
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<subScript id="17D334F7FF997A23C0EBB970FEFDFED1" attach="both" box="[248,288,348,365]" fontSize="7" pageId="5" pageNumber="33">16: 1</subScript>
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<emphasis id="B923EAA0FF997A23C133B974FEEDFED6" box="[288,304,344,362]" italics="true" pageId="5" pageNumber="33">Ɯ</emphasis>
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7
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<emphasis id="B923EAA0FF997A23C12EB97FFE9AFED6" box="[317,327,339,362]" italics="true" pageId="5" pageNumber="33">c</emphasis>
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and/or C
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<subScript id="17D334F7FF997A23C1BDB970FE0BFED1" attach="both" box="[430,470,348,365]" fontSize="7" pageId="5" pageNumber="33">16: 1</subScript>
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<emphasis id="B923EAA0FF997A23C1C5B974FE3BFED6" box="[470,486,344,362]" italics="true" pageId="5" pageNumber="33">Ɯ</emphasis>
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6
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<emphasis id="B923EAA0FF997A23C1E0B97FFE20FED6" box="[499,509,339,362]" italics="true" pageId="5" pageNumber="33">c</emphasis>
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) are the major components of the cellular fatty acids (Ȅ7 %). The major polar lipids are a phosphoglycolipid, six unidentified glycolipids and an unidentified aminophospholipid. The polyamine is spermidine. The novel strain exhibits tolerance to UV irradiation (>1500 J m
|
||
<superScript id="7C229BFAFF997A23C133B9C5FEE4FE44" attach="left" box="[288,313,487,504]" fontSize="7" pageId="5" pageNumber="33">‒2</superScript>
|
||
) and to gamma radiation (>12 kGy). The G+C content of genomic DNA of strain THG-AG1.5
|
||
<superScript id="7C229BFAFF997A23C2DEBA2AFD04FDAB" attach="left" box="[717,729,518,535]" fontSize="7" pageId="5" pageNumber="33">T</superScript>
|
||
is 74.8 mol%. The peptidoglycan amino acids are alanine, valine, glutamic acid, glycine, ornithine, lysine and aspartic acid. The whole-cell-wall sugars are ribose, mannose and glucose.
|
||
</paragraph>
|
||
<paragraph id="8BE836B2FF997A23C06ABA94FF62FCF0" blockId="5.[121,759,182,844]" pageId="5" pageNumber="33">
|
||
<materialsCitation id="3B3F3CEFFF997A23C06ABA94FF62FCF0" ID-GBIF-Occurrence="3465766301" collectedFrom="was isolated from a rhizosphere soil sample of Hibiscus syriacus L. (Mugunghwa flower)" collectionCode="THG-AG" country="South Korea" location="Kyung Hee University" municipality="Yongin" pageId="5" pageNumber="33" specimenCode="THG-AG1.5T" specimenCount="1" stateProvince="Gyeonggi" typeStatus="holotype">
|
||
<typeStatus id="54EC8810FF997A23C06ABA94FF65FD6C" box="[121,184,696,720]" pageId="5" pageNumber="33">Strain</typeStatus>
|
||
<specimenCode id="DBF19EC9FF997A23C0C4BA94FEB5FD7E" box="[215,360,689,720]" collectionCode="THG-AG" pageId="5" pageNumber="33">
|
||
THG-AG1.5
|
||
<superScript id="7C229BFAFF997A23C14FBA9DFEB5FD7E" attach="left" box="[348,360,689,706]" fontSize="7" pageId="5" pageNumber="33">T</superScript>
|
||
</specimenCode>
|
||
(=KACC 18850
|
||
<superScript id="7C229BFAFF997A23C256BA9DFD8CFD7E" attach="none" box="[581,593,689,706]" fontSize="7" pageId="5" pageNumber="33">T</superScript>
|
||
=CCTCC AB 2016078
|
||
<superScript id="7C229BFAFF997A23C0C1BAFCFF03FD5D" attach="none" box="[210,222,720,737]" fontSize="7" pageId="5" pageNumber="33">T</superScript>
|
||
)
|
||
<collectedFrom id="384B754FFF997A23C0E1BAFBFD80FCB2" pageId="5" pageNumber="33">
|
||
was isolated from a rhizosphere soil sample of
|
||
<taxonomicName id="4C574D31FF997A23C06ABADAFEEBFCB2" box="[121,310,758,782]" class="Magnoliopsida" family="Malvaceae" genus="Hibiscus" kingdom="Plantae" order="Malvales" pageId="5" pageNumber="33" phylum="Tracheophyta" rank="species" species="syriacus">
|
||
<emphasis id="B923EAA0FF997A23C06ABADAFEEBFCB2" box="[121,310,758,782]" italics="true" pageId="5" pageNumber="33">Hibiscus syriacus</emphasis>
|
||
</taxonomicName>
|
||
L. (Mugunghwa flower)
|
||
</collectedFrom>
|
||
, collected in
|
||
<location id="8E886069FF997A23C06ABB39FEA0FC91" LSID="urn:lsid:plazi:treatment:03FE87A4FF987A23C328BA98FF62FCF0:8E886069FF997A23C06ABB39FEA0FC91" box="[121,381,789,813]" country="South Korea" municipality="Yongin" name="Kyung Hee University" pageId="5" pageNumber="33" stateProvince="Gyeonggi">Kyung Hee University</location>
|
||
,
|
||
<collectingMunicipality id="6B8CACC8FF997A23C181BB39FE3FFC91" box="[402,482,789,813]" pageId="5" pageNumber="33">Yongin</collectingMunicipality>
|
||
,
|
||
<collectingRegion id="4993F850FF997A23C1E4BB39FD83FC91" box="[503,606,789,813]" country="South Korea" name="Gyeonggi" pageId="5" pageNumber="33">Gyeonggi</collectingRegion>
|
||
,
|
||
<collectingCountry id="F3407622FF997A23C260BB39FF66FCF0" name="South Korea" pageId="5" pageNumber="33">Republic of Korea</collectingCountry>
|
||
.
|
||
</materialsCitation>
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |