185 lines
16 KiB
XML
185 lines
16 KiB
XML
<document id="2B28BB0AD8634136896D621FC4418957" ID-DOI="10.1051/parasite/2023057" ID-ISSN="1776-1042" ID-PMC="PMC10714680" ID-PubMed="38084939" ID-Zenodo-Dep="12524515" IM.bibliography_approvedBy="valdenar" IM.illustrations_approvedBy="valdenar" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_requiresApprovalFor="GgImagineBatch" IM.taxonomicNames_approvedBy="felipe" IM.treatments_approvedBy="valdenar" checkinTime="1719279849764" checkinUser="felipe" docAuthor="Su, Si, Hong, Mei, Cui, Meng-Yu, Gui, Zheng, Ma, Shi-Fa, Wu, Lin, Xing, Li-Li, Mu, Lan, Yu, Jing-Feng, Fu, Shao-Yin, Gao, Rui-Juan & Qi, Dong-Dong" docDate="2023" docId="039C6B19A948D2233A18F8D070A6FBF5" docLanguage="en" docName="Parasite.30.58.pdf" docOrigin="Parasite (Paris, France) 30 (58)" docSource="http://dx.doi.org/10.1051/parasite/2023057" docStyle="DocumentStyle:A40D95A4C09C797DBB807E438D2BF437.2:Parasite.2013-.journal_article" docStyleId="A40D95A4C09C797DBB807E438D2BF437" docStyleName="Parasite.2013-.journal_article" docStyleVersion="2" docTitle="Coxiella" docType="treatment" docVersion="3" lastPageNumber="7" masterDocId="FFA51361A94ED2243935FFE87052FF16" masterDocTitle="Microbial diversity of ticks and a novel typhus group Rickettsia species (Rickettsiales bacterium Ac 37 b) in Inner Mongolia, China" masterLastPageNumber="13" masterPageNumber="1" pageNumber="7" updateTime="1721140996003" updateUser="valdenar" zenodo-license-document="CC-BY-4.0">
|
|
<mods:mods id="B6D9D2F6F3F43054A7D4DBB089587C9D" xmlns:mods="http://www.loc.gov/mods/v3">
|
|
<mods:titleInfo id="308C773724F63075BCBE674AC595A7C0">
|
|
<mods:title id="016DA8EC2EFE01E6DE1D41B689444B49">Microbial diversity of ticks and a novel typhus group Rickettsia species (Rickettsiales bacterium Ac 37 b) in Inner Mongolia, China</mods:title>
|
|
</mods:titleInfo>
|
|
<mods:name id="F2D0C5F30DAD241B556CE7DF81DC4A15" type="personal">
|
|
<mods:role id="826DF8B7B65C09FF7C527213BEAFC54F">
|
|
<mods:roleTerm id="C8D3E241AF27E9CDFD7F4698240F6D06">Author</mods:roleTerm>
|
|
</mods:role>
|
|
<mods:namePart id="1CB763E1FEB8BE608A68C47BB3734FE4">Su, Si</mods:namePart>
|
|
<mods:affiliation id="ABC5FF1D504D232CC8D6ECE86B3EFBD6">Graduate School, Inner Mongolia Medical University, Hohhot 010059, Inner Mongolia, China</mods:affiliation>
|
|
</mods:name>
|
|
<mods:name id="D801BBAB47E2EF34F54CDE73652970AF" type="personal">
|
|
<mods:role id="46FAE497EA7BD6C879C42B14066BBD0A">
|
|
<mods:roleTerm id="365336FAAEF6E6D48252AED6892F1CFC">Author</mods:roleTerm>
|
|
</mods:role>
|
|
<mods:namePart id="D7584DC443E460036B939261E2EC195A">Hong, Mei</mods:namePart>
|
|
<mods:affiliation id="29B12F905747530DC10F91F00FA875A1">School of Basic Medicine, Inner Mongolia Medical University, Hohhot 010110, Inner Mongolia, China</mods:affiliation>
|
|
</mods:name>
|
|
<mods:name id="0B6CE482B54162EC63EB7656164FB1CC" type="personal">
|
|
<mods:role id="FAE0E39AE30D3CD05C8EEB25AE878497">
|
|
<mods:roleTerm id="552AF810F3C4A90CCC1E82124CC8FA08">Author</mods:roleTerm>
|
|
</mods:role>
|
|
<mods:namePart id="B252F893B4D893596CEFC1347D96D141">Cui, Meng-Yu</mods:namePart>
|
|
<mods:affiliation id="5E454B8078450C2613568EB4E51A4BDD">Graduate School, Inner Mongolia Medical University, Hohhot 010059, Inner Mongolia, China</mods:affiliation>
|
|
</mods:name>
|
|
<mods:name id="D439BC7BB2C90FCCAA682A0AEC89E073" type="personal">
|
|
<mods:role id="903498F15CC4D3ED3AA827DE230928FB">
|
|
<mods:roleTerm id="80B8626484877643A2A8932A9C0FF522">Author</mods:roleTerm>
|
|
</mods:role>
|
|
<mods:namePart id="E0D8A6A6C9202BAFCC0E6B3E21549FE2">Gui, Zheng</mods:namePart>
|
|
<mods:affiliation id="493BB74B8502795251A333A8E2EEA6D0">First Hospital of Jilin University, Changchun 130021, China</mods:affiliation>
|
|
</mods:name>
|
|
<mods:name id="54C40AF4481694F0BD3D303E6C280906" type="personal">
|
|
<mods:role id="4BF40C52E0F6C4FDBEBD34BB081822A2">
|
|
<mods:roleTerm id="E82FFBF69D8A7BFDFF68A4B56D229123">Author</mods:roleTerm>
|
|
</mods:role>
|
|
<mods:namePart id="667D53429B2DF6267F5C5DDC7AD22C39">Ma, Shi-Fa</mods:namePart>
|
|
<mods:affiliation id="CF80C824F70F536FBCE2CBBB11D045C7">Hulunbuir Mental Health Center, Hulunbuir 022150, Inner Mongolia, China</mods:affiliation>
|
|
</mods:name>
|
|
<mods:name id="9099AA666F8F836B3FDD518491D1332D" type="personal">
|
|
<mods:role id="408CD4B78FB0DBA885A38B8855B79912">
|
|
<mods:roleTerm id="B01DD4BECDECDC76B3ECA7739A64124E">Author</mods:roleTerm>
|
|
</mods:role>
|
|
<mods:namePart id="35683EDF20047B3DEBB7376A98D991A8">Wu, Lin</mods:namePart>
|
|
<mods:affiliation id="76FC5B7C659344CB8F44719440A34D89">Beijing Guoke Biotechnology Co., Ltd, 102200 Beijing, China</mods:affiliation>
|
|
</mods:name>
|
|
<mods:name id="D9EE7CD4B381CD57508BC2CEEBC71BD6" type="personal">
|
|
<mods:role id="1C7955DFFAA22EFE67CCF86C9998E38F">
|
|
<mods:roleTerm id="94DA9BB3BC14CB0DE41F0A60BA2F30EE">Author</mods:roleTerm>
|
|
</mods:role>
|
|
<mods:namePart id="0278145C7E2B1D63A21FBC2558770822">Xing, Li-Li</mods:namePart>
|
|
<mods:affiliation id="DD92F7347D0234A7171DE03C7CF6C9D5">Department of Infection Control, Second Affiliated Hospital of Inner Mongolia Medical University, Hohhot, Inner Mongolia Autonomous Region 010000, China</mods:affiliation>
|
|
</mods:name>
|
|
<mods:name id="97F82C1DA2064D33C9730729F7D65C25" type="personal">
|
|
<mods:role id="4F90883426001FE100D8C8325CCDD1C4">
|
|
<mods:roleTerm id="09AE9FD6617DB124F3E89F52DFE67852">Author</mods:roleTerm>
|
|
</mods:role>
|
|
<mods:namePart id="AC72271237A0D0187A279123EE508E3F">Mu, Lan</mods:namePart>
|
|
<mods:affiliation id="91C622E737B00070143A62AFD2B3DFAE">School of Basic Medicine, Inner Mongolia Medical University, Hohhot 010110, Inner Mongolia, China</mods:affiliation>
|
|
</mods:name>
|
|
<mods:name id="BDA75EDC09F63D71EE29386D70A9313F" type="personal">
|
|
<mods:role id="77C8B3DBFCBDDF5B59D2DCD92769AEAC">
|
|
<mods:roleTerm id="46CBAE598E83EFF521ECC46B37B48A94">Author</mods:roleTerm>
|
|
</mods:role>
|
|
<mods:namePart id="119C0B36A2B2661F004121E09D9B9C04">Yu, Jing-Feng</mods:namePart>
|
|
<mods:affiliation id="799D53DEA66A139873F803102AAA0D70">School of Basic Medicine, Inner Mongolia Medical University, Hohhot 010110, Inner Mongolia, China</mods:affiliation>
|
|
</mods:name>
|
|
<mods:name id="56BB9B964B3D8B592F1F7BCDD18E2043" type="personal">
|
|
<mods:role id="9C9E00FEA5DFEA3F54C15989804B9F34">
|
|
<mods:roleTerm id="D67C202E6F2536E0CB4AB7B19A89D907">Author</mods:roleTerm>
|
|
</mods:role>
|
|
<mods:namePart id="D5541306DDE400B7F8F512032196E467">Fu, Shao-Yin</mods:namePart>
|
|
<mods:affiliation id="228AF68A108202195A8C1F53DC287CF9">Inner Mongolia Academy of Agricultural & Animal Husbandry Science, Hohhot 010031, Inner Mongolia, China</mods:affiliation>
|
|
</mods:name>
|
|
<mods:name id="47302D594545CB9786B7D4795BF700E6" type="personal">
|
|
<mods:role id="FE79C0B430BDEAB65AA26C6793B5F56D">
|
|
<mods:roleTerm id="F816529199D491273EB83799CC080042">Author</mods:roleTerm>
|
|
</mods:role>
|
|
<mods:namePart id="E5850CA503537CF0ACAE425F2A8372C6">Gao, Rui-Juan</mods:namePart>
|
|
<mods:affiliation id="2B8DD98092F5C528623696BDA9C85B5E">School of Basic Medicine, Inner Mongolia Medical University, Hohhot 010110, Inner Mongolia, China</mods:affiliation>
|
|
</mods:name>
|
|
<mods:name id="B771FE0A965A3A31F601FBD0564B9082" type="personal">
|
|
<mods:role id="2593DB03FE623BA0D6E299FFDF615034">
|
|
<mods:roleTerm id="9D8D3761E9CE41331755D86A1093DE02">Author</mods:roleTerm>
|
|
</mods:role>
|
|
<mods:namePart id="860DF5A1E035D78FC9A31D53936A00D1">Qi, Dong-Dong</mods:namePart>
|
|
<mods:affiliation id="78DA7F67AE9B7C961B67D87F6E1660FC">Hulunbuir Mental Health Center, Hulunbuir 022150, Inner Mongolia, China</mods:affiliation>
|
|
</mods:name>
|
|
<mods:typeOfResource id="ADE78409EF409AA0D14363C10FB68E8F">text</mods:typeOfResource>
|
|
<mods:relatedItem id="6A58DFDB2677DCE33DEFD32C5F2AE6AF" type="host">
|
|
<mods:titleInfo id="DED0A35B069B3AC851FFC3AE2D9CA674">
|
|
<mods:title id="46793A93DD70630CEC079403A23838BD">Parasite</mods:title>
|
|
</mods:titleInfo>
|
|
<mods:part id="069BA64C657FA2DB22F9393BB0C933D0">
|
|
<mods:date id="04B091EB364C0056DEE90D5971268AC4">2023</mods:date>
|
|
<mods:detail id="6746D218D6640317B68D8BB4399C2E0C" type="series">
|
|
<mods:title id="7C2B817F02A990C1B220EC21B2D8B5A3">Paris, France</mods:title>
|
|
</mods:detail>
|
|
<mods:detail id="8CA5824E165F56A04690F319B7F6B6A9" type="pubDate">
|
|
<mods:number id="FEB3A4429FD974DF960F1A59B9A51578">2023-12-12</mods:number>
|
|
</mods:detail>
|
|
<mods:detail id="40AD106915C782F1C56E6AB5879FFC79" type="volume">
|
|
<mods:number id="A2A6E4E1518E901BFFE6FD12D7D91F4E">30</mods:number>
|
|
</mods:detail>
|
|
<mods:detail id="6F6B1C44EB207644952B1DCE9F259909" type="issue">
|
|
<mods:number id="4D1DF582D343B07D77F37B0353370387">58</mods:number>
|
|
</mods:detail>
|
|
<mods:extent id="2B96125D9143E9E7454B9B657A3F5D3D" unit="page">
|
|
<mods:start id="CD366BCD596AA4DCE76018B88085F1ED">1</mods:start>
|
|
<mods:end id="44C80CEFC9D4AD8ED89FBE0FA8BEC225">13</mods:end>
|
|
</mods:extent>
|
|
</mods:part>
|
|
</mods:relatedItem>
|
|
<mods:location id="99803E567B628682064BB7541010D482">
|
|
<mods:url id="20626CDEBCF3A09053F074D92AF07305">http://dx.doi.org/10.1051/parasite/2023057</mods:url>
|
|
</mods:location>
|
|
<mods:classification id="0088A04FBF25FB4ECB4CC2DDD4459603">journal article</mods:classification>
|
|
<mods:identifier id="C609C7782F35BE1F9698DA4C049AA588" type="DOI">10.1051/parasite/2023057</mods:identifier>
|
|
<mods:identifier id="DD8F7892BFCD753CFD54DD2D8B3A4917" type="ISSN">1776-1042</mods:identifier>
|
|
<mods:identifier id="50CC060966E1E171BDF1467DAF6C3537" type="PMC">PMC10714680</mods:identifier>
|
|
<mods:identifier id="2263F10427CDB46E48FE52687450C539" type="PubMed">38084939</mods:identifier>
|
|
<mods:identifier id="35F2D446197126DD94BA492E55F8B715" type="Zenodo-Dep">12524515</mods:identifier>
|
|
</mods:mods>
|
|
<treatment id="039C6B19A948D2233A18F8D070A6FBF5" LSID="urn:lsid:plazi:treatment:039C6B19A948D2233A18F8D070A6FBF5" httpUri="http://treatment.plazi.org/id/039C6B19A948D2233A18F8D070A6FBF5" lastPageId="7" lastPageNumber="7" pageId="6" pageNumber="7">
|
|
<subSubSection id="C32F8984A948D2223A18F8D07487F847" box="[813,1237,1848,1873]" pageId="6" pageNumber="7" type="nomenclature">
|
|
<paragraph id="8B8ADA0FA948D2223A18F8D07487F847" blockId="6.[813,1237,1848,1873]" box="[813,1237,1848,1873]" pageId="6" pageNumber="7">
|
|
<heading id="D0C26D63A948D2223A18F8D07487F847" box="[813,1237,1848,1873]" fontSize="9" level="2" pageId="6" pageNumber="7" reason="4">
|
|
<emphasis id="B941061DA948D2223A18F8D07487F847" bold="true" box="[813,1237,1848,1873]" pageId="6" pageNumber="7">
|
|
Phylogenetic analysis of
|
|
<taxonomicName id="4C35A18CA948D2223D5AF8D07487F847" ID-CoL="3V45" box="[1135,1237,1848,1873]" class="Gammaproteobacteria" family="Coxiellaceae" genus="Coxiella" kingdom="Bacteria" order="Legionellales" pageId="6" pageNumber="7" phylum="Proteobacteria" rank="genus">
|
|
<emphasis id="B941061DA948D2223D5AF8D07487F847" bold="true" box="[1135,1237,1848,1873]" italics="true" pageId="6" pageNumber="7">Coxiella</emphasis>
|
|
</taxonomicName>
|
|
</emphasis>
|
|
</heading>
|
|
</paragraph>
|
|
</subSubSection>
|
|
<subSubSection id="C32F8984A948D2233A60F88670A6FBF5" lastPageId="7" lastPageNumber="8" pageId="6" pageNumber="7" type="etymology">
|
|
<paragraph id="8B8ADA0FA948D2233A60F88670A6FBF5" blockId="6.[813,1467,1902,2048]" lastBlockId="7.[113,768,1045,1251]" lastPageId="7" lastPageNumber="8" pageId="6" pageNumber="7">
|
|
The
|
|
<taxonomicName id="4C35A18CA948D2223AA7F88773BBF890" box="[914,1001,1903,1926]" class="Gammaproteobacteria" family="Coxiellaceae" genus="Coxiella" kingdom="Bacteria" order="Legionellales" pageId="6" pageNumber="7" phylum="Proteobacteria" rank="genus">
|
|
<emphasis id="B941061DA948D2223AA7F88773BBF890" box="[914,1001,1903,1926]" italics="true" pageId="6" pageNumber="7">Coxiella</emphasis>
|
|
</taxonomicName>
|
|
(OP286858) sequences were randomly selected to build a phylogenetic tree, named after regions and displayed on the phylogenetic tree with squares (
|
|
<figureCitation id="130EC68AA948D2223C04F8437529F8D4" box="[1329,1403,1963,1986]" captionStart="Figure 9" captionStartId="8.[113,180,1580,1601]" captionTargetBox="[151,1436,238,1560]" captionTargetId="figure-103@8.[151,1436,238,1560]" captionTargetPageId="8" captionText="Figure 9. Phylogenetic tree of Rickettsiales bacterium Ac37b, Rickettsia bellii, Rickettsia raoultii, Anaplasma and Coxiella in ticks based on neighbor-joining (NJ) modeling; only values higher than 60 were added to the tree branches. (a) Phylogenetic tree of Rickettsiales bacterium Ac37b identified in Inner Mongolia; the 16S rRNA gene sequences obtained in this study are marked with black squares (1320 bp) and triangles (1430 bp). (b) Phylogenetic tree of Rickettsia bellii identified in Inner Mongolia; the 16S rRNA gene sequences obtained in this study are marked with black squares (1109 bp). (c) Phylogenetic tree of Rickettsia raoultii identified in Inner Mongolia; the 16S rRNA gene sequences obtained in this study are marked with black squares (855 bp). (d) Phylogenetic tree of Anaplasma identified in Inner Mongolia; the 16S rRNA gene sequences obtained in this study are marked with black squares (1455 bp) and triangles (547 bp). (e) Phylogenetic tree of Coxiella identified in Inner Mongolia; the 16S rRNA gene sequences obtained in this study are marked with black squares (1463 bp)." figureDoi="http://doi.org/10.5281/zenodo.12524531" httpUri="https://zenodo.org/record/12524531/files/figure.png" pageId="6" pageNumber="7">Fig. 9e</figureCitation>
|
|
). The phylogenetic tree of the 16S rRNA gene shows that
|
|
<taxonomicName id="4C35A18CA948D2223C51F82275E9F8F7" box="[1380,1467,1994,2017]" class="Gammaproteobacteria" family="Coxiellaceae" genus="Coxiella" kingdom="Bacteria" order="Legionellales" pageId="6" pageNumber="7" phylum="Proteobacteria" rank="genus">
|
|
<emphasis id="B941061DA948D2223C51F82275E9F8F7" box="[1380,1467,1994,2017]" italics="true" pageId="6" pageNumber="7">Coxiella</emphasis>
|
|
</taxonomicName>
|
|
found in
|
|
<collectingRegion id="49F114EDA948D2223ABAF8017460F716" box="[911,1074,2025,2048]" country="China" name="Nei Mongol" pageId="6" pageNumber="7">Inner Mongolia</collectingRegion>
|
|
is on the same branch as uncultured
|
|
<taxonomicName id="4C35A18CA949D2233944FBFD7150FB3A" box="[113,258,1045,1068]" class="Gammaproteobacteria" family="Coxiellaceae" genus="Coxiella" kingdom="Bacteria" order="Legionellales" pageId="7" pageNumber="8" phylum="Proteobacteria" rank="species" species="undetermined">
|
|
<emphasis id="B941061DA949D2233944FBFD709AFB3A" box="[113,200,1045,1068]" italics="true" pageId="7" pageNumber="8">Coxiella</emphasis>
|
|
sp.
|
|
</taxonomicName>
|
|
clones DX-56 (
|
|
<collectionCode id="ED2442CAA949D22338D2FBFD7251FB3A" box="[487,515,1045,1068]" pageId="7" pageNumber="8">JX</collectionCode>
|
|
432012) and DX-68 (
|
|
<collectionCode id="ED2442CAA949D223394FFBDC70C5FB5D" box="[122,151,1076,1099]" pageId="7" pageNumber="8">JX</collectionCode>
|
|
432013). The sequences were compared and analyzed using
|
|
<collectionCode id="ED2442CAA949D2233944FBBA70ECFB7F" box="[113,190,1106,1129]" pageId="7" pageNumber="8">MEGA</collectionCode>
|
|
7.0 software. The results show that the homologies between the 16S rRNA gene sequence of
|
|
<taxonomicName id="4C35A18CA949D2233B72FB9972CCFB9E" box="[583,670,1137,1160]" class="Gammaproteobacteria" family="Coxiellaceae" genus="Coxiella" kingdom="Bacteria" order="Legionellales" pageId="7" pageNumber="8" phylum="Proteobacteria" rank="genus">
|
|
<emphasis id="B941061DA949D2233B72FB9972CCFB9E" box="[583,670,1137,1160]" italics="true" pageId="7" pageNumber="8">Coxiella</emphasis>
|
|
</taxonomicName>
|
|
in
|
|
<collectingRegion id="49F114EDA949D2233BFCFB997087FBB0" country="China" name="Nei Mongol" pageId="7" pageNumber="8">Inner Mongolia</collectingRegion>
|
|
and the sequences of
|
|
<taxonomicName id="4C35A18CA949D22338FAFB787274FBB1" box="[463,550,1168,1191]" class="Gammaproteobacteria" family="Coxiellaceae" genus="Coxiella" kingdom="Bacteria" order="Legionellales" pageId="7" pageNumber="8" phylum="Proteobacteria" rank="genus">
|
|
<emphasis id="B941061DA949D22338FAFB787274FBB1" box="[463,550,1168,1191]" italics="true" pageId="7" pageNumber="8">Coxiella</emphasis>
|
|
</taxonomicName>
|
|
DX-56 (
|
|
<collectionCode id="ED2442CAA949D2233BB9FB6772FAFBB0" box="[652,680,1167,1190]" pageId="7" pageNumber="8">JX</collectionCode>
|
|
432012) and
|
|
<taxonomicName id="4C35A18CA949D2233990FB4670AEFBD3" box="[165,252,1198,1221]" class="Gammaproteobacteria" family="Coxiellaceae" genus="Coxiella" kingdom="Bacteria" order="Legionellales" pageId="7" pageNumber="8" phylum="Proteobacteria" rank="genus">
|
|
<emphasis id="B941061DA949D2233990FB4670AEFBD3" box="[165,252,1198,1221]" italics="true" pageId="7" pageNumber="8">Coxiella</emphasis>
|
|
</taxonomicName>
|
|
DX-68 (
|
|
<collectionCode id="ED2442CAA949D223385CFB4671D4FBD3" box="[361,390,1198,1221]" pageId="7" pageNumber="8">JX</collectionCode>
|
|
432013) are 99.93% and 99.66%, respectively.
|
|
</paragraph>
|
|
</subSubSection>
|
|
</treatment>
|
|
</document> |