169 lines
20 KiB
XML
169 lines
20 KiB
XML
<document id="9373FF042C6997FE5792F1DED893A8A5" ID-DOI="10.11646/zootaxa.3825.1.1" ID-ISSN="1175-5326" ID-Zenodo-Dep="4920347" ID-ZooBank="1F6DEC4F-6E2A-45B6-A71C-3D6CF783FEDF" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_requiresApprovalFor="existingObjects,plazi" IM.taxonomicNames_approvedBy="felipe" checkinTime="1623274888355" checkinUser="felipe" docAuthor="Padial, José M., Grant, Taran & Frost, Darrel R." docDate="2014" docId="2F75F459FF99FFF9CA9EFB2A9E40B8E0" docLanguage="en" docName="zt03825p132.pdf" docOrigin="Zootaxa 3825 (1)" docStyle="DocumentStyle:5EBBA59367AD13919D70D935FA04F6A3.14:Zootaxa.2013-.monograph" docStyleId="5EBBA59367AD13919D70D935FA04F6A3" docStyleName="Zootaxa.2013-.monograph" docStyleVersion="14" docTitle="Craugastoridae" docType="treatment" docVersion="4" lastPageNumber="51" masterDocId="D34C8C21FFABFFCBCA09FFC39D16BE33" masterDocTitle="Molecular systematics of terraranas (Anura: Brachycephaloidea) with an assessment of the effects of alignment and optimality criteria" masterLastPageNumber="132" masterPageNumber="1" pageNumber="51" updateTime="1698961367049" updateUser="plazi">
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<mods:titleInfo id="65CF9ACEE65400457EEE8C807C3D998A">
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<mods:title id="D432D0B64ED3A4A3A5CE2AB98B943871">Molecular systematics of terraranas (Anura: Brachycephaloidea) with an assessment of the effects of alignment and optimality criteria</mods:title>
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<mods:name id="27AAAA32FF49DC0FC461047A882C750D" type="personal">
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<mods:namePart id="C7B95598DB80C5B22F4CF0CB4CD3D3B9">Padial, José M.</mods:namePart>
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<mods:nameIdentifier id="BDBAE8200A9A787279A65933467A5726" type="email">padialj@carnegiemnh.org</mods:nameIdentifier>
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<mods:namePart id="283AB05D32973B2792D8D26683E5AAB1">Grant, Taran</mods:namePart>
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<mods:nameIdentifier id="0ACA6438290FB485237362D5955ED277" type="email">taran.grant@ib.usp.br</mods:nameIdentifier>
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<mods:roleTerm id="D1663BB67A769A4334639F9E8B72D067">Author</mods:roleTerm>
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<mods:namePart id="6C40188177F1657319E2BB804E3C02E8">Frost, Darrel R.</mods:namePart>
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<mods:nameIdentifier id="4D3D57EEC3DB3EE929F016ADD20E8FC9" type="email">padialj@carnegiemnh.org</mods:nameIdentifier>
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<mods:typeOfResource id="FEC835895EE00394D9311F5D6EC5A97B">text</mods:typeOfResource>
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<mods:title id="89A4E9AF588843EB5ED7A2BCE9D58BF6">Zootaxa</mods:title>
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<mods:part id="FF952FD8FD4C0F36CB2C0D384AF882C2">
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<mods:date id="47A12528BEB92B61E7914B0F4D0C6D8B">2014</mods:date>
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<mods:number id="DDCFCC1220F6B84A2014800EBC449FF8">2014-06-26</mods:number>
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<mods:detail id="884127E7AE2A95BC4A20ABA0D36D095F" type="volume">
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<mods:number id="09F6BA9FD99C98DD6920B0FFC8161222">3825</mods:number>
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<mods:number id="716F7C87B542FC9FD8DB69E29497B1A8">1</mods:number>
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<mods:start id="351A8BEE2D155D5B77B6A0ACF22B3D19">1</mods:start>
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<mods:classification id="AB0755EA1FF8C068CA53FE608E6C4EAF">journal article</mods:classification>
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<mods:identifier id="44CACDDA6EF11D061285611C22C447A6" type="DOI">10.11646/zootaxa.3825.1.1</mods:identifier>
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<mods:identifier id="12D3B5B36789092BCD4DE50F6A1FC88C" type="ISSN">1175-5326</mods:identifier>
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<treatment id="2F75F459FF99FFF9CA9EFB2A9E40B8E0" LSID="urn:lsid:plazi:treatment:2F75F459FF99FFF9CA9EFB2A9E40B8E0" httpUri="http://treatment.plazi.org/id/2F75F459FF99FFF9CA9EFB2A9E40B8E0" lastPageNumber="51" pageId="50" pageNumber="51">
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<subSubSection id="EFC616C4FF99FFF9CA9EFB2A9C4CBB30" box="[151,346,1257,1283]" pageId="50" pageNumber="51" type="nomenclature">
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<paragraph id="A763454FFF99FFF9CA9EFB2A9C4CBB30" blockId="50.[151,346,1257,1283]" box="[151,346,1257,1283]" pageId="50" pageNumber="51">
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<heading id="FC2BF223FF99FFF9CA9EFB2A9C4CBB30" bold="true" box="[151,346,1257,1283]" fontSize="11" level="2" pageId="50" pageNumber="51" reason="3">
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<taxonomicName id="60DC3ECCFF99FFF9CA9EFB2A9C4CBB30" ID-CoL="8NC" box="[151,346,1257,1283]" class="Amphibia" family="Craugastoridae" kingdom="Animalia" order="Anura" pageId="50" pageNumber="51" phylum="Chordata" rank="family">
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<emphasis id="95A8995DFF99FFF9CA9EFB2A9C4CBB30" bold="true" box="[151,346,1257,1283]" pageId="50" pageNumber="51">Craugastoridae</emphasis>
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</taxonomicName>
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</heading>
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</paragraph>
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</subSubSection>
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<subSubSection id="EFC616C4FF99FFF9CA9EFAED9E40B8E0" pageId="50" pageNumber="51" type="discussion">
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<paragraph id="A763454FFF99FFF9CA9EFAED9E40B8E0" blockId="50.[151,1436,1326,1747]" pageId="50" pageNumber="51">
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This taxon is equivalent to
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<taxonomicName id="60DC3ECCFF99FFF9CBC1FAED9F64BB74" box="[456,626,1326,1351]" class="Amphibia" family="Craugastoridae" kingdom="Animalia" order="Anura" pageId="50" pageNumber="51" phylum="Chordata" rank="family">Craugastoridae</taxonomicName>
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of
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<bibRefCitation id="C34D38BEFF99FFF9C891FAEC9E81BB74" author="Pyron, R. A. & Wiens, J. J." box="[664,919,1326,1351]" pageId="50" pageNumber="51" pagination="543 - 583" refId="ref55319" refString="Pyron, R. A. & Wiens, J. J. (2011) A large-scale phylogeny of Amphibia including over 2,800 species, and a revised classification of extant frogs, salamanders, and caecilians. Molecular Phylogenetics and Evolution, 61, 543 - 583. http: // dx. doi. org / 10.1016 / j. ympev. 2011.06.012" type="journal article" year="2011">Pyron & Wiens (2011)</bibRefCitation>
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except for the inclusion of
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<taxonomicName id="60DC3ECCFF99FFF9CEC5FAED987EBB74" box="[1228,1384,1326,1351]" class="Amphibia" family="Craugastoridae" genus="Ceuthomantis" higherTaxonomySource="GBIF" kingdom="Animalia" order="Anura" pageId="50" pageNumber="51" phylum="Chordata" rank="genus">
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<emphasis id="95A8995DFF99FFF9CEC5FAED987EBB74" box="[1228,1384,1326,1351]" italics="true" pageId="50" pageNumber="51">Ceuthomantis</emphasis>
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</taxonomicName>
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(see below). The family
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<taxonomicName id="60DC3ECCFF99FFF9CB74FA919F30BB58" box="[381,550,1362,1387]" class="Amphibia" family="Craugastoridae" kingdom="Animalia" order="Anura" pageId="50" pageNumber="51" phylum="Chordata" rank="family">Craugastoridae</taxonomicName>
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was originally named by
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<bibRefCitation id="C34D38BEFF99FFF9C95FFA919959BB58" author="Hedges, S. B. & Duellman, W. E. & Heinicke, M. P." box="[854,1103,1362,1387]" pageId="50" pageNumber="51" pagination="1 - 182" refId="ref48854" refString="Hedges, S. B., Duellman, W. E. & Heinicke, M. P. (2008 a) New World direct-developing frogs (Anura, Terrarana), molecular phylogeny, classification, biogeography, and conservation. Zootaxa, 1737, 1 - 182." type="journal article" year="2008">
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Hedges
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<emphasis id="95A8995DFF99FFF9C9BDFA909EF9BB58" box="[948,1007,1362,1387]" italics="true" pageId="50" pageNumber="51">et al.</emphasis>
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(2008a)
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</bibRefCitation>
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to accommodate a primarily Middle American clade that included most species traditionally assigned to the subgenus
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<taxonomicName id="60DC3ECCFF99FFF9CEDBFAB49845BBBD" authorityName="Cope" authorityYear="1862" box="[1234,1363,1399,1422]" class="Amphibia" family="Craugastoridae" genus="Craugastor" kingdom="Animalia" order="Anura" pageId="50" pageNumber="51" phylum="Chordata" rank="genus">
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<emphasis id="95A8995DFF99FFF9CEDBFAB49845BBBD" box="[1234,1363,1399,1422]" italics="true" pageId="50" pageNumber="51">Craugastor</emphasis>
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</taxonomicName>
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—first recognized as a clade on the basis of molecular evidence by
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<bibRefCitation id="C34D38BEFF99FFF9C99BFA5999DBBB80" author="Crawford, A. J. & Smith, E. E." box="[914,1229,1434,1459]" pageId="50" pageNumber="51" pagination="536 - 555" refId="ref44405" refString="Crawford, A. J. & Smith, E. E. (2005) Cenozoic biogeography and evolution in direct-developing frogs of Central America (Leptodactylidae: Eleutherodactylus) as inferred from a phylogenetic analysis of nuclear and mitochondrial genes. Molecular Phylogenetics and Evolution, 35, 536 - 555. http: // dx. doi. org / 10.1016 / j. ympev. 2005.03.006" type="journal article" year="2005">Crawford & Smith (2005)</bibRefCitation>
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and
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<bibRefCitation id="C34D38BEFF99FFF9CF1DFA589DF6BBE4" author="Frost, D. R. & Grant, T. & Faivovich, J. & Bain, R. H. & Haas, A. & Haddad, C. F. B. & De Sa, R. O. & Channing, A. & Wilkinson, M. & Donnellan, S. C. & Raxworthy, C. J. & Campbell, J. A. & Blotto, B. L. & Moler, P. & Drewes, R. C. & Nussbaum, R. A. & Lynch, J. D. & Green, D. M. & Wheeler, W. C." pageId="50" pageNumber="51" pagination="1 - 370" refId="ref47074" refString="Frost, D. R., Grant, T., Faivovich, J., Bain, R. H., Haas, A., Haddad, C. F. B., De Sa, R. O., Channing, A., Wilkinson, M., Donnellan, S. C., Raxworthy, C. J., Campbell, J. A., Blotto, B. L., Moler, P., Drewes, R. C., Nussbaum, R. A., Lynch, J. D., Green, D. M. & Wheeler, W. C. (2006) The amphibian tree of life. Bulletin of the American Museum of Natural History, 297, 1 - 370. http: // dx. doi. org / 10.1206 / 0003 - 0090 (2006) 297 [0001: tatol] 2.0. co; 2" type="journal article" year="2006">
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Frost
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<emphasis id="95A8995DFF99FFF9CF55FA58988ABB80" box="[1372,1436,1434,1459]" italics="true" pageId="50" pageNumber="51">et al.</emphasis>
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(2006)
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</bibRefCitation>
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—plus an unexpected companion from the Atlantic Forest of eastern
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<collectingCountry id="DFCB05DFFF99FFF9CE52FA7D9989BBE4" box="[1115,1183,1470,1495]" name="Brazil" pageId="50" pageNumber="51">Brazil</collectingCountry>
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as its sister taxon, “
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<taxonomicName id="60DC3ECCFF99FFF9CAAAFA219C78BBC8" box="[163,366,1506,1531]" class="Amphibia" family="Eleutherodactylidae" genus="Eleutherodactylus" kingdom="Animalia" order="Anura" pageId="50" pageNumber="51" phylum="Chordata" rank="genus">
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<emphasis id="95A8995DFF99FFF9CAAAFA219C78BBC8" box="[163,366,1506,1531]" italics="true" pageId="50" pageNumber="51">Eleutherodactylus</emphasis>
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</taxonomicName>
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”
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<taxonomicName id="60DC3ECCFF99FFF9CB8BFA219CFCBBC8" baseAuthorityName="Spix" baseAuthorityYear="1824" box="[386,490,1506,1531]" class="Amphibia" family="Craugastoridae" genus="Haddadus" kingdom="Animalia" order="Anura" pageId="50" pageNumber="51" phylum="Chordata" rank="species" species="binotatus">
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<emphasis id="95A8995DFF99FFF9CB8BFA219CFCBBC8" box="[386,490,1506,1531]" italics="true" pageId="50" pageNumber="51">binotatus</emphasis>
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</taxonomicName>
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, which was placed by
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<bibRefCitation id="C34D38BEFF99FFF9C8E6FA219EF2BBC8" author="Hedges, S. B. & Duellman, W. E. & Heinicke, M. P." box="[751,996,1506,1531]" pageId="50" pageNumber="51" pagination="1 - 182" refId="ref48854" refString="Hedges, S. B., Duellman, W. E. & Heinicke, M. P. (2008 a) New World direct-developing frogs (Anura, Terrarana), molecular phylogeny, classification, biogeography, and conservation. Zootaxa, 1737, 1 - 182." type="journal article" year="2008">
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Hedges
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<emphasis id="95A8995DFF99FFF9C942FA209E92BBC8" box="[843,900,1506,1531]" italics="true" pageId="50" pageNumber="51">et al.</emphasis>
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(2008a)
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</bibRefCitation>
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in their new genus
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<taxonomicName id="60DC3ECCFF99FFF9CECCFA21982EBBC8" authorityName="Hedges, Duellman & Heinicke" authorityYear="2008" box="[1221,1336,1506,1531]" class="Amphibia" family="Craugastoridae" genus="Haddadus" kingdom="Animalia" order="Anura" pageId="50" pageNumber="51" phylum="Chordata" rank="genus">
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<emphasis id="95A8995DFF99FFF9CECCFA21982EBBC8" box="[1221,1336,1506,1531]" italics="true" pageId="50" pageNumber="51">Haddadus</emphasis>
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</taxonomicName>
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together with
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<taxonomicName id="60DC3ECCFF99FFF9CADDF9CB9C5CB82C" baseAuthorityName="Boulenger" baseAuthorityYear="1888" box="[212,330,1542,1567]" class="Amphibia" family="Craugastoridae" genus="Haddadus" kingdom="Animalia" order="Anura" pageId="50" pageNumber="51" phylum="Chordata" rank="species" species="plicifer">
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<emphasis id="95A8995DFF99FFF9CADDF9CB9C5CB82C" box="[212,330,1542,1567]" italics="true" pageId="50" pageNumber="51">H. plicifer</emphasis>
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</taxonomicName>
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. More recently,
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<bibRefCitation id="C34D38BEFF99FFF9C818F9C49E0BB82C" author="Pyron, R. A. & Wiens, J. J." box="[529,797,1542,1567]" pageId="50" pageNumber="51" pagination="543 - 583" refId="ref55319" refString="Pyron, R. A. & Wiens, J. J. (2011) A large-scale phylogeny of Amphibia including over 2,800 species, and a revised classification of extant frogs, salamanders, and caecilians. Molecular Phylogenetics and Evolution, 61, 543 - 583. http: // dx. doi. org / 10.1016 / j. ympev. 2011.06.012" type="journal article" year="2011">Pyron & Wiens (2011)</bibRefCitation>
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found
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<taxonomicName id="60DC3ECCFF99FFF9C97CF9C5991CB82C" authorityName=", Lynch" authorityYear="1986" box="[885,1034,1542,1567]" class="Amphibia" family="Strabomantidae" genus="Strabomantis" kingdom="Animalia" order="Anura" pageId="50" pageNumber="51" phylum="Chordata" rank="genus">
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<emphasis id="95A8995DFF99FFF9C97CF9C5991CB82C" box="[885,1034,1542,1567]" italics="true" pageId="50" pageNumber="51">Strabomantis</emphasis>
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</taxonomicName>
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to be the sister of
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<taxonomicName id="60DC3ECCFF99FFF9CEFDF9C59871B82C" authorityName="Hedges, Duellman & Heinicke" authorityYear="2008" box="[1268,1383,1542,1567]" class="Amphibia" family="Craugastoridae" genus="Haddadus" kingdom="Animalia" order="Anura" pageId="50" pageNumber="51" phylum="Chordata" rank="genus">
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<emphasis id="95A8995DFF99FFF9CEFDF9C59871B82C" box="[1268,1383,1542,1567]" italics="true" pageId="50" pageNumber="51">Haddadus</emphasis>
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</taxonomicName>
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and
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<taxonomicName id="60DC3ECCFF99FFF9CA9EF9E89C01B871" authorityName="Cope" authorityYear="1862" box="[151,279,1579,1602]" class="Amphibia" family="Craugastoridae" genus="Craugastor" kingdom="Animalia" order="Anura" pageId="50" pageNumber="51" phylum="Chordata" rank="genus">
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<emphasis id="95A8995DFF99FFF9CA9EF9E89C01B871" box="[151,279,1579,1602]" italics="true" pageId="50" pageNumber="51">Craugastor</emphasis>
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</taxonomicName>
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. Because
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<taxonomicName id="60DC3ECCFF99FFF9CB85F9E99F37B870" authorityName=", Lynch" authorityYear="1986" box="[396,545,1578,1603]" class="Amphibia" family="Strabomantidae" genus="Strabomantis" kingdom="Animalia" order="Anura" pageId="50" pageNumber="51" phylum="Chordata" rank="genus">
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<emphasis id="95A8995DFF99FFF9CB85F9E99F37B870" box="[396,545,1578,1603]" italics="true" pageId="50" pageNumber="51">Strabomantis</emphasis>
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</taxonomicName>
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is the
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<typeStatus id="7867FBEDFF99FFF9C879F9E89FB6B870" box="[624,672,1579,1603]" pageId="50" pageNumber="51">type</typeStatus>
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genus of
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<taxonomicName id="60DC3ECCFF99FFF9C91AF9E99ED4B870" box="[787,962,1578,1603]" class="Amphibia" family="Strabomantidae" kingdom="Animalia" order="Anura" pageId="50" pageNumber="51" phylum="Chordata" rank="family">Strabomantidae</taxonomicName>
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(
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<bibRefCitation id="C34D38BEFF99FFF9C9DAF9E999ABB870" author="Hedges, S. B. & Duellman, W. E. & Heinicke, M. P." box="[979,1213,1578,1603]" pageId="50" pageNumber="51" pagination="1 - 182" refId="ref48854" refString="Hedges, S. B., Duellman, W. E. & Heinicke, M. P. (2008 a) New World direct-developing frogs (Anura, Terrarana), molecular phylogeny, classification, biogeography, and conservation. Zootaxa, 1737, 1 - 182." type="journal article" year="2008">
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Hedges
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<emphasis id="95A8995DFF99FFF9CE3BF9E8997AB870" box="[1074,1132,1578,1603]" italics="true" pageId="50" pageNumber="51">et al.</emphasis>
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2008a
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</bibRefCitation>
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), in order to rectify the paraphyly of
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<taxonomicName id="60DC3ECCFF99FFF9CB69F98D9F1BB854" box="[352,525,1614,1639]" class="Amphibia" family="Craugastoridae" kingdom="Animalia" order="Anura" pageId="50" pageNumber="51" phylum="Chordata" rank="family">Craugastoridae</taxonomicName>
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,
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<taxonomicName id="60DC3ECCFF99FFF9C812F98D9FDCB854" box="[539,714,1614,1639]" class="Amphibia" family="Strabomantidae" kingdom="Animalia" order="Anura" pageId="50" pageNumber="51" phylum="Chordata" rank="family">Strabomantidae</taxonomicName>
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must be considered a junior synonym of
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<taxonomicName id="60DC3ECCFF99FFF9CEBFF98D9875B854" box="[1206,1379,1614,1639]" class="Amphibia" family="Craugastoridae" kingdom="Animalia" order="Anura" pageId="50" pageNumber="51" phylum="Chordata" rank="family">Craugastoridae</taxonomicName>
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. Our analyses strongly corroborate this finding, with the inclusive
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<taxonomicName id="60DC3ECCFF99FFF9C95AF9B19EEBB8B8" box="[851,1021,1650,1675]" class="Amphibia" family="Craugastoridae" kingdom="Animalia" order="Anura" pageId="50" pageNumber="51" phylum="Chordata" rank="family">Craugastoridae</taxonomicName>
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as sister of
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<taxonomicName id="60DC3ECCFF99FFF9CE83F9B19845B8B8" box="[1162,1363,1650,1675]" class="Amphibia" family="Brachycephalidae" kingdom="Animalia" order="Anura" pageId="50" pageNumber="51" phylum="Chordata" rank="family">Brachycephalidae</taxonomicName>
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in the TA + PA results.
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<taxonomicName id="60DC3ECCFF99FFF9CB8AF9559F3BB89C" box="[387,557,1686,1711]" class="Amphibia" family="Craugastoridae" kingdom="Animalia" order="Anura" pageId="50" pageNumber="51" phylum="Chordata" rank="family">Craugastoridae</taxonomicName>
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is composed of three major clades that we recognize as subfamilies
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<taxonomicName id="60DC3ECCFF99FFF9CA9EF9799C52B8E0" authorityName="Hedges, Duellman & Heinicke" authorityYear="2008" box="[151,324,1722,1747]" class="Amphibia" family="Craugastoridae" kingdom="Animalia" order="Anura" pageId="50" pageNumber="51" phylum="Chordata" rank="subFamily" subFamily="Craugastorinae">Craugastorinae</taxonomicName>
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,
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<taxonomicName id="60DC3ECCFF99FFF9CB47F9799CFAB8E0" authorityName="Hedges, Duellman & Heinicke" authorityYear="2008" box="[334,492,1722,1747]" class="Amphibia" family="Craugastoridae" kingdom="Animalia" order="Anura" pageId="50" pageNumber="51" phylum="Chordata" rank="subFamily" subFamily="Holoadeninae">Holoadeninae</taxonomicName>
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, and Pristimantinae (
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<figureCitation id="3FE759CAFF99FFF9C8D1F9799E5FB8E0" box="[728,841,1722,1747]" captionStart="FIGURE 22" captionStartId="49.[151,250,1284,1306]" captionTargetBox="[180,377,228,1187]" captionTargetId="graphics-342@49.[180,371,228,1177]" captionTargetPageId="49" captionText="FIGURE 22. Schematic representation of the new family- and genus-level taxonomy of Brachycephaloidea presented in this study as derived from the results of tree-alignment + parsimony phylogenetic analyses of nucleotide sequences. The placement and affinities of Dischidodactylus and Niceforonia are based on morphological synapomorphies (see text)." figureDoi="http://doi.org/10.5281/zenodo.4920387" httpUri="https://zenodo.org/record/4920387/files/figure.png" pageId="50" pageNumber="51">Figure 22</figureCitation>
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).
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</paragraph>
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</subSubSection>
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</treatment>
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</document> |