240 lines
17 KiB
XML
240 lines
17 KiB
XML
<document id="20689795348D54E1CC0077B32CD56AE2" ID-DOI="10.3897/mycokeys.107.125549" ID-publisher-id="125549" URI-arpha="3EA0E723-E6FC-58B0-8491-ED4CC2FBAB87" XM.bibliography_approvedBy="admin" XM.materialsCitations_approvedBy="admin" XM.taxonomicNames_approvedBy="admin" XM.treatmentCitations_approvedBy="admin" XM.treatments_approvedBy="admin" article-type="research-article" checkinTime="1723223129036" checkinUser="pensoft" docAuthor="Tedersoo, Leho, Magurno, Franco, Alkahtani, Saad & Mikryukov, Vladimir" docDate="2024" docId="7666441803815937993CE8A1D5B82667" docLanguage="en" docName="MycoKeys 107: 249-271" docOrigin="MycoKeys 107" docSource="https://mycokeys.pensoft.net/article/125549/download/xml/" docStyle="DocumentStyle:PensoftTaxPub.0000.journal_article.mycokeys" docStyleName="PensoftTaxPub.0000.journal_article.mycokeys" docTitle="Lokruma stenii Tedersoo 2024, sp. nov." docType="treatment" docVersion="3" dtd-version="3.0" lastPageNumber="271" masterDocId="3EA0E723E6FC58B08491ED4CC2FBAB87" masterDocTitle="Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes)" masterLastPageNumber="271" masterPageNumber="249" pageNumber="249" updateTime="1723229325626" updateUser="admin">
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<mods:mods id="930613172D7ED9CFEDF2F60758587067" xmlns:mods="http://www.loc.gov/mods/v3">
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<mods:titleInfo id="DE2B11F04C1642A196C46369E999D3DB">
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<mods:title id="3EB625AC5E05C5657852FBBA7526B9A4">Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes)</mods:title>
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</mods:titleInfo>
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<mods:name id="B5D9C690E1FFD2AE864418A87619737B" type="personal">
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<mods:role id="7F67B1FE3E5D6662A1F3C8D935D7D968">
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<mods:roleTerm id="81153B81EE1A7A8DE819013BE2168296">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="8DA1369885DA6D7DD2FD1DBBE375238D">Tedersoo, Leho</mods:namePart>
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<mods:affiliation id="E0660F8A3DDA36E741251ABFC638C591">Mycology and Microbiology Center, University of Tartu, 2 Liivi, 50409 Tartu, Estonia & Department of Zoology, College of Science, King Saud University, 12371 Riyadh, Saudi Arabia</mods:affiliation>
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</mods:name>
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<mods:name id="A6D661D8A0FE59E4B5B2ED26EDE38128" type="personal">
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<mods:role id="C6BFDB261C649BEAD4FBA2BADBC9E406">
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<mods:roleTerm id="517B81A36E1FAB333502814307D330E6">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="3D5C85445D13091516DD2EB32A16360E">Magurno, Franco</mods:namePart>
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<mods:nameIdentifier id="0FEF9B6DB707BF52832F09185AE58D85" type="ORCID">0000-0002-3117-8149</mods:nameIdentifier>
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<mods:affiliation id="1CF984CB4D70A1639149394C9E91B832">Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice, Jagiellońska 28, 40 - 032 Katowice, Poland</mods:affiliation>
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</mods:name>
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<mods:name id="DF37C57D8C841D31558AB78848FCAB76" type="personal">
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<mods:role id="B953C7DD539BE8DB111F6D6224A016F8">
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<mods:roleTerm id="1E8E9A70E8ED2D6AC23CDCCF6FCBDEA0">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="BC0A39E33E2D288B21593831921F031C">Alkahtani, Saad</mods:namePart>
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<mods:nameIdentifier id="BCCDE00D3E9DA1CB6D2CA38EE3947948" type="ORCID">0000-0001-7381-5110</mods:nameIdentifier>
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<mods:affiliation id="ABCA215F8A8AF9D824536B7BFD9A3F6B">Department of Zoology, College of Science, King Saud University, 12371 Riyadh, Saudi Arabia</mods:affiliation>
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</mods:name>
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<mods:name id="C8A0BA4ED75D0CC0F0F25A51D615551D" type="personal">
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<mods:roleTerm id="C09603BA29CB69A3B0E4729B1EB6F768">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="C7BE53597347E8894FCC0E343D693CA2">Mikryukov, Vladimir</mods:namePart>
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<mods:nameIdentifier id="4000A3FE89A896ED81309E7D58DB6162" type="ORCID">0000-0003-2786-2690</mods:nameIdentifier>
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<mods:affiliation id="03CF3F408BAB2C20B7C11F62B6181514">Mycology and Microbiology Center, University of Tartu, 2 Liivi, 50409 Tartu, Estonia</mods:affiliation>
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</mods:name>
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<mods:typeOfResource id="E5A8FDC5D828034DD211B5A58D7BDDA9">text</mods:typeOfResource>
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<mods:relatedItem id="6149956817B4082A6306A0F7D5D92BF6" type="host">
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<mods:titleInfo id="9155CCDB192A0EA64B134AFE9CDB5BDF">
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<mods:title id="E15978A62D7A3ABF7D9F8233B5913595">MycoKeys</mods:title>
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</mods:titleInfo>
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<mods:part id="552F0D93126FDFEB036C1BC9DD872B67">
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<mods:date id="883644D10758099CE7DEAC1A77EABDE0">2024</mods:date>
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<mods:detail id="B7E7C66E59B8B0E4C46DC13EA57E264B" type="pubDate">
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<mods:number id="469E0EEA936B7D390ABD0FC1CF7BA5BC">2024-08-09</mods:number>
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</mods:detail>
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<mods:detail id="24C4CD0676E7D0D403024DB7B28E9D45" type="volume">
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<mods:number id="77A1C50E2186CB42B1CA0C8C969AE1FD">107</mods:number>
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</mods:detail>
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<mods:extent id="A678DF43FF05DF057D46BE53A6E895E9" unit="page">
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<mods:start id="AFC96727B499917677A6377D4DEF2D06">249</mods:start>
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<mods:end id="49CDA9CBCD4CFE36A9306A290EE42BF6">271</mods:end>
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</mods:extent>
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</mods:part>
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</mods:relatedItem>
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<mods:classification id="DA8C1162BC8CC1E59219CC8796AE9C0C">journal article</mods:classification>
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<mods:identifier id="C52594BCBF1201EE614FD7F7A4FD26C9" type="DOI">10.3897/mycokeys.107.125549</mods:identifier>
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</mods:mods>
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<treatment id="7666441803815937993CE8A1D5B82667" ID-DOI="http://doi.org/10.5281/zenodo.13286530" ID-Zenodo-Dep="13286530" ID-arpha="76664418-0381-5937-993C-E8A1D5B82667" ID-mycobank="853597" LSID="urn:lsid:plazi:treatment:7666441803815937993CE8A1D5B82667" httpUri="http://treatment.plazi.org/id/7666441803815937993CE8A1D5B82667">
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<subSubSection id="CC108042FBB0EB685C4035DA528662AE" type="nomenclature">
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<paragraph id="9C5941951984801F43C6387FA7596827">
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<taxonomicName id="16C99D24259D773D25F6C65A88F7A962" authority="Tedersoo" authorityName="Tedersoo" authorityYear="2024" class="Magnoliopsida" family="Lokrumaceae" genus="Lokruma" kingdom="Fungi" order="Lokrumales" phylum="Tracheophyta" rank="species" species="stenii" status="sp. nov.">
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<emphasis id="D9BA5885D4E2FEF1F3D39EE833DA9279" italics="true">Lokruma stenii</emphasis>
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Tedersoo
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</taxonomicName>
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<taxonomicNameLabel id="60CEBBA08936F9AD440926DEBCFB1F49" rank="species">sp. nov.</taxonomicNameLabel>
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</paragraph>
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</subSubSection>
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<subSubSection id="SECID0ETXDI" type="diagnosis">
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<paragraph id="D593FC8C91EA410C9FC798C908770BFA">
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<heading id="ADF3FE4B06F2E5B230FC83957D093F28" reason="title">Diagnosis.</heading>
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</paragraph>
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<paragraph id="4AC1BBDEC9B16D56DFC27A8123F43F36">
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Separation from other species of
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<taxonomicName id="1543BFD4C3BC844FDE0B184F1C245A0D" class="Magnoliopsida" family="Dipterocarpaceae" genus="Lokruma" kingdom="Plantae" order="Malvales" phylum="Tracheophyta" rank="genus">
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<emphasis id="690C45A4B5BF7BC68A3E1AEA059B2D5B" italics="true">Lokruma</emphasis>
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</taxonomicName>
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based on the
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<abbrev id="ABBRID0EAYDI" xlink_title="internal transcribed spacer">ITS</abbrev>
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region (positions 159–178 taacttaattttttcccgag; one mismatch allowed) as shown in Fig.
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<figureCitation id="CCA8E8DFA10DC8B398558E79C9C28FB2" captionStart="Figure 10" captionStartId="F10" captionText="Figure 10. Diagnostic barcodes for Lokruma stenii relative to closely-related taxa in ITS 2." figureDoi="10.3897/mycokeys.107.125549.figure10" httpUri="https://binary.pensoft.net/fig/1111397">10</figureCitation>
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. There are no short barcodes in the first 700 bp of LSU that allow distinguishing
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<taxonomicName id="9731C56B53A2C7320F1D9267B0182C17" class="Magnoliopsida" family="Dipterocarpaceae" genus="Lokruma" kingdom="Plantae" order="Malvales" phylum="Tracheophyta" rank="species" species="stenii">
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<emphasis id="B36C7929D4FF4584EADA92648D63A9F7" italics="true">L. stenii</emphasis>
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</taxonomicName>
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all from other congeners.
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</paragraph>
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<caption id="D8B9EC69ECCF88031049F3FBEC79E7A1" ID-DOI="10.3897/mycokeys.107.125549.figure10" ID-arpha="EE86E385-7103-5CE4-A355-F05990315A5A" httpUri="https://binary.pensoft.net/fig/1111397" startId="F10">
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<paragraph id="72FEA963118B0F2FBE77333EC6B9B7F7">
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<label id="EE476BDC71503295507AC6EBC9FC6FDE">Figure 10.</label>
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</paragraph>
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<paragraph id="AAD40BECA5AD507DDE29A8DA1BDA8636">
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Diagnostic barcodes for
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<taxonomicName id="95AB6D8C1C658C0480518056C2295F40" class="Magnoliopsida" family="Dipterocarpaceae" genus="Lokruma" kingdom="Plantae" order="Malvales" phylum="Tracheophyta" rank="species" species="stenii">
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<emphasis id="28F2B163BD055C058B73321030923220" italics="true">Lokruma stenii</emphasis>
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</taxonomicName>
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relative to closely-related taxa in ITS 2.
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</paragraph>
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</caption>
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</subSubSection>
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<subSubSection id="SECID0ELZDI" type="material">
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<paragraph id="2B2C2733450FEE7B0EB895FCD4E3944D">
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<heading id="AE4404DB099A5A4D5A4790FFCF70E6DB" reason="title">Type.</heading>
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</paragraph>
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<paragraph id="6791E624CE4ED5F9EBF27BAC8D324E96">
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<materialsCitation id="34A50CD45044BF165F15786CB7AA264E" collectedFrom="Pinus halepensis forest" collectionCode="TUE, EUK" country="Croatia" latitude="42.6223" location="Lokrum" longLatPrecision="6" longitude="18.1241" specimenCode="TUE 103193, EUK 1203766, TUE 003193" specimenCount="2" typeStatus="holotype">
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Soil
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<abbrev id="ABBRID0ERZDI" xlink_title="environmental DNA">eDNA</abbrev>
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sample
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<specimenCode id="A1FDE54628835A5947F8F68140E5CF30">TUE 103193</specimenCode>
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(
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<emphasis id="D23E9CDA6B44254B17C983655362DE95" bold="true" italics="true">
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<typeStatus id="D023D46DD2D53D5AE7F20E89E092DE4E" type="holotype">holotype</typeStatus>
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</emphasis>
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); type sequence
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<specimenCode id="8F2DA30151DCED78E3B14C1B375F81D3">EUK 1203766</specimenCode>
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(
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<emphasis id="61F149E9FD3983690CB4C97DC525B30C" bold="true" italics="true">
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<typeStatus id="46281DD3F1CB8EB49AD9C15D4EE69BB7" type="lectotype">lectotype</typeStatus>
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</emphasis>
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);
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<abbrev id="ABBRID0E2ZDI" xlink_title="Global Soil Mycobiome consortium">GSMc</abbrev>
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plot S 689,
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<collectedFrom id="7FBD9AE5682FDC0D73E71E399C954594">
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<taxonomicName id="C9BB6DBA9A95FC30E2695940BFA570F3" class="Pinopsida" family="Pinaceae" genus="Pinus" kingdom="Plantae" order="Pinales" phylum="Tracheophyta" rank="species" species="halepensis">
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<emphasis id="7B340461860C3924825E906E1668CFB6" italics="true">Pinus halepensis</emphasis>
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</taxonomicName>
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forest
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</collectedFrom>
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(soil sample
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<specimenCode id="AAD617E8D4C18B5F90ED1DC0BEBDE972">TUE 003193</specimenCode>
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) in
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<location id="ADC56C3ACEF1D5492F6EBFC1807A5A2F" LSID="urn:lsid:plazi:treatment:7666441803815937993CE8A1D5B82667:ADC56C3ACEF1D5492F6EBFC1807A5A2F" country="Croatia" latitude="42.6223" longLatPrecision="6" longitude="18.1241" name="Lokrum">Lokrum</location>
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,
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<collectingCountry id="F806C58AEE0AF701A507AC7F35A4BD68" name="Croatia">Croatia</collectingCountry>
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,
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<named-content content-type="dwc:verbatimCoordinates" id="NCID0ET1DI" specific-use="{"type":"Point","coordinates":[18.124100,42.622300]}">
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<geoCoordinate id="F20A1436F9102A423C5DEDA85549E94D" degrees="42.6223" direction="north" orientation="latitude" precision="5" value="42.6223">42.6223 ° N</geoCoordinate>
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,
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<geoCoordinate id="2CC2F6162D03F185FDC0EEAB2BFA87CD" degrees="18.1241" direction="east" orientation="longitude" precision="5" value="18.1241">18.1241 ° E</geoCoordinate>
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</named-content>
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</materialsCitation>
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.
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</paragraph>
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</subSubSection>
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<subSubSection id="SECID0EY1DI" type="description">
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<paragraph id="72923DCD5597133277302E773A46EACF">
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<heading id="4DDF6FFA9806A4AD05FAB480CC0A9959" reason="title">Description.</heading>
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</paragraph>
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<paragraph id="A334F2198D0D444270EB283972C8F6D1">
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Other sequences: EUK 1603283 (
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<abbrev id="ABBRID0E51DI" xlink_title="Global Soil Mycobiome consortium">GSMc</abbrev>
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plot G 4301,
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<taxonomicName id="04295ABBFE6777B9966688B4753ECF82" class="Magnoliopsida" family="Betulaceae" genus="Betula" kingdom="Plantae" order="Fagales" phylum="Tracheophyta" rank="species" species="pendula">
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<emphasis id="6203CC6E91E89A618A2798FCB375BD42" italics="true">Betula pendula</emphasis>
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</taxonomicName>
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forest soil in Männamaa,
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<collectingCountry id="A5F046D53879894586DC5DD3C11D0AC2" name="Estonia">Estonia</collectingCountry>
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,
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<named-content content-type="dwc:verbatimCoordinates" id="NCID0EQ2DI" specific-use="{"type":"Point","coordinates":[22.633460,58.832580]}">
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<geoCoordinate id="3236637230520DCAD760287C7C794714" degrees="58.83258" direction="north" orientation="latitude" precision="1" value="58.83258">58.83258 ° N</geoCoordinate>
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,
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<geoCoordinate id="410125F4FD4B53D8DAD261C22C6397B3" degrees="22.63346" direction="east" orientation="longitude" precision="1" value="22.63346">22.63346 ° E</geoCoordinate>
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</named-content>
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); EUK 1604041 (
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<abbrev id="ABBRID0EV2DI" xlink_title="Global Soil Mycobiome consortium">GSMc</abbrev>
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plot S 480,
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<emphasis id="290ACFAD6E1A41F53D54169EEDAEE37B" italics="true">
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<taxonomicName id="B30816E7C0FCBE1E993783D620D798C9" class="Magnoliopsida" family="Salicaceae" genus="Populus" kingdom="Plantae" order="Malpighiales" phylum="Tracheophyta" rank="genus">Populus</taxonomicName>
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-
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<taxonomicName id="3407F640E4BD4B0EED5267E2CCFFAF95" class="Pinopsida" family="Pinaceae" genus="Picea" kingdom="Plantae" order="Pinales" phylum="Tracheophyta" rank="genus">Picea</taxonomicName>
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</emphasis>
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forest soil in Käru,
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<collectingCountry id="E972EB04873B4E286A6F5613A570CF67" name="Estonia">Estonia</collectingCountry>
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,
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<named-content content-type="dwc:verbatimCoordinates" id="NCID0ED3DI" specific-use="{"type":"Point","coordinates":[25.222490,58.804070]}">
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<geoCoordinate id="2C560035DF2F86B13B25462C6DF234D7" degrees="58.80407" direction="north" orientation="latitude" precision="1" value="58.80407">58.80407 ° N</geoCoordinate>
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,
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<geoCoordinate id="11DACF139F62CBD366F4E0815B6F986D" degrees="25.22249" direction="east" orientation="longitude" precision="1" value="25.22249">25.22249 ° E</geoCoordinate>
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</named-content>
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); EUK 1604042 (
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<abbrev id="ABBRID0EI3DI" xlink_title="Global Soil Mycobiome consortium">GSMc</abbrev>
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plot G 4734,
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<emphasis id="2FBD4AA528C0096DECE04B8D51A07088" italics="true">
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<taxonomicName id="6EAAFE5D000B05840C0A0F364DE4148D" class="Magnoliopsida" family="Salicaceae" genus="Populus" kingdom="Plantae" order="Malpighiales" phylum="Tracheophyta" rank="genus">Populus</taxonomicName>
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- Alnus
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</emphasis>
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forest soil in Urissaare,
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<collectingCountry id="D4090D87068EFC476EA310A54851EE4C" name="Estonia">Estonia</collectingCountry>
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,
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<named-content content-type="dwc:verbatimCoordinates" id="NCID0EW3DI" specific-use="{"type":"Point","coordinates":[24.657390,58.026730]}">
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<geoCoordinate id="8AFCBB0D378AC6A998FE732EDEB80C27" degrees="58.02673" direction="north" orientation="latitude" precision="1" value="58.02673">58.02673 ° N</geoCoordinate>
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,
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<geoCoordinate id="89CC60460F88866E80161FBE98EE0847" degrees="24.65739" direction="east" orientation="longitude" precision="1" value="24.65739">24.65739 ° E</geoCoordinate>
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</named-content>
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); and EUK 1600039 (LSU:
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<abbrev id="ABBRID0E23DI" xlink_title="Global Soil Mycobiome consortium">GSMc</abbrev>
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plot HB 19,
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<emphasis id="D7563DD4AA8A78D9AB68657C3B011963" italics="true">
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<taxonomicName id="0DFF1E252A3EF882796B6B487A27B427" class="Magnoliopsida" family="Salicaceae" genus="Populus" kingdom="Plantae" order="Malpighiales" phylum="Tracheophyta" rank="genus">Populus</taxonomicName>
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x wettsteinii
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</emphasis>
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forest plantation soil, Oja,
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<collectingCountry id="EEC825E94BDB876B980DE930D93FBCD7" name="Estonia">Estonia</collectingCountry>
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,
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<named-content content-type="dwc:verbatimCoordinates" id="NCID0ER4DI" specific-use="{"type":"Point","coordinates":[26.377990,58.827470]}">
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<geoCoordinate id="3B5B7DB0FB5D9236C95B3AFC96DBD1CB" degrees="58.82747" direction="north" orientation="latitude" precision="1" value="58.82747">58.82747 ° N</geoCoordinate>
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,
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<geoCoordinate id="159826D6D3FBD8DF2C8D07ACF13DA942" degrees="26.37799" direction="east" orientation="longitude" precision="1" value="26.37799">26.37799 ° E</geoCoordinate>
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</named-content>
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).
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</paragraph>
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</subSubSection>
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<subSubSection id="SECID0EW4DI" type="etymology">
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<paragraph id="F3DAFC15D3856FF852A806A0314C926F">
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<heading id="731E19C187137AB3B01AF9A00FF35739" reason="title">Etymology.</heading>
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</paragraph>
|
||
<paragraph id="CF855CF769C3E824D77161D135BBA952">
|
||
<emphasis id="A8EB3F2275A6A9D6F7F8F2CEAB56C9EE" italics="true">Lokrum</emphasis>
|
||
(Serbo-Croatian) refers to type locality; and
|
||
<emphasis id="076E3B472F91C2C8490A876110FA21ED" italics="true">Sten</emphasis>
|
||
(Estonian) refers to the first name of Sten Anslan who collected the materials from the type locality.
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="SECID0EQ5DI" type="notes">
|
||
<paragraph id="892C13A5BE54E930EFB49297F9F269AE">
|
||
<heading id="17B460EA17CADB072547E69780AF51DB" reason="title">Notes.</heading>
|
||
</paragraph>
|
||
<paragraph id="E79E935E2B0AEFCBB77A50AEFA87C297">
|
||
Found in
|
||
<collectingCountry id="C48A275204DEFD425B39CA19B77911A9" name="Croatia">Croatia</collectingCountry>
|
||
and
|
||
<collectingCountry id="588F129E14589E107A9099F4F9B20184" name="Estonia">Estonia</collectingCountry>
|
||
, with
|
||
<abbrev id="ABBRID0EW5DI" xlink_title="internal transcribed spacer">ITS</abbrev>
|
||
and LSU sequences displaying up to 1 % of differences.
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |