199 lines
14 KiB
XML
199 lines
14 KiB
XML
<document ID-DOI="http://dx.doi.org/10.3897/mycokeys.65.47704" ID-GBIF-Dataset="00685a01-0785-47ec-aa0b-77c991ee4b08" ID-PMC="PMC7078340" ID-Pensoft-Pub="1314-4049-65-49" ID-Pensoft-UUID="DED2BF86E6FD56179642F7119604CEB9" ID-PubMed="32206025" ModsDocID="1314-4049-65-49" checkinTime="1583860301782" checkinUser="pensoft" docAuthor="Hou, Lingwei, Hernandez-Restrepo, Margarita, Groenewald, Johannes Zacharias, Cai, Lei & Crous, Pedro W." docDate="2020" docId="F8B7455D5AFD5C69B5715DDF3CE976C5" docLanguage="en" docName="MycoKeys 65: 49-99" docOrigin="MycoKeys 65" docSource="http://dx.doi.org/10.3897/mycokeys.65.47704" docTitle="Paraboeremia truiniorum Hern. - Restr., L. W. Hou, L. Cai & Crous 2020, sp. nov." docType="treatment" docVersion="4" id="DED2BF86E6FD56179642F7119604CEB9" lastPageNumber="49" masterDocId="DED2BF86E6FD56179642F7119604CEB9" masterDocTitle="Citizen science project reveals high diversity in Didymellaceae (Pleosporales, Dothideomycetes)" masterLastPageNumber="99" masterPageNumber="49" pageNumber="49" updateTime="1668136425574" updateUser="ExternalLinkService">
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<mods:mods xmlns:mods="http://www.loc.gov/mods/v3">
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<mods:titleInfo>
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<mods:title>Citizen science project reveals high diversity in Didymellaceae (Pleosporales, Dothideomycetes)</mods:title>
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</mods:titleInfo>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Hou, Lingwei</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Hernandez-Restrepo, Margarita</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Groenewald, Johannes Zacharias</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Cai, Lei</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Crous, Pedro W.</mods:namePart>
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</mods:name>
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<mods:typeOfResource>text</mods:typeOfResource>
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<mods:relatedItem type="host">
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<mods:titleInfo>
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<mods:title>MycoKeys</mods:title>
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</mods:titleInfo>
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<mods:part>
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<mods:date>2020</mods:date>
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<mods:detail type="volume">
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<mods:number>65</mods:number>
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</mods:detail>
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<mods:extent unit="page">
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<mods:start>49</mods:start>
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<mods:end>99</mods:end>
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</mods:extent>
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</mods:part>
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</mods:relatedItem>
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<mods:location>
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<mods:url>http://dx.doi.org/10.3897/mycokeys.65.47704</mods:url>
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</mods:location>
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<mods:classification>journal article</mods:classification>
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<mods:identifier type="DOI">http://dx.doi.org/10.3897/mycokeys.65.47704</mods:identifier>
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<mods:identifier type="Pensoft-Pub">1314-4049-65-49</mods:identifier>
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<mods:identifier type="Pensoft-UUID">DED2BF86E6FD56179642F7119604CEB9</mods:identifier>
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</mods:mods>
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<treatment ID-GBIF-Taxon="162481730" LSID="urn:lsid:plazi:treatment:F8B7455D5AFD5C69B5715DDF3CE976C5" httpUri="http://treatment.plazi.org/id/F8B7455D5AFD5C69B5715DDF3CE976C5" lastPageNumber="49" pageId="0" pageNumber="49">
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<subSubSection pageId="0" pageNumber="49" type="nomenclature">
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<paragraph pageId="0" pageNumber="49">
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<taxonomicName LSID="F8B7455D-5AFD-5C69-B571-5DDF3CE976C5" authority="Hern. - Restr., L. W. Hou, L. Cai & Crous" authorityName="Hern. - Restr., L. W. Hou, L. Cai & Crous" authorityYear="2020" class="Dothideomycetes" family="Didymellaceae" genus="Paraboeremia" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Paraboeremia truiniorum" order="Pleosporales" pageId="0" pageNumber="49" phylum="Ascomycota" rank="species" species="truiniorum" status="sp. nov.">Paraboeremia truiniorum Hern.-Restr., L. W. Hou, L. Cai & Crous</taxonomicName>
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<taxonomicNameLabel pageId="0" pageNumber="49">sp. nov.</taxonomicNameLabel>
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<figureCitation captionStart="Figure 8" captionStartId="F8" captionText="Figure 8. Paraboeremia truiniorum (CBS 144952). A, B Colony on OA (front and reverse) C, D colony on MEA (front and reverse) E, F colony on PDA (front and reverse) G pycnidia forming on OA H pycnidium I section of pycnidium J section of pycnidial wall K-N conidiogenous cells O conidia. Scale bars: 20 μm (H); 50 μm (I); 5 μm (J-O)." figureDoi="10.3897/mycokeys.65.47704.figure8" httpUri="https://binary.pensoft.net/fig/388211" pageId="0" pageNumber="49">Figure 8</figureCitation>
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</paragraph>
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</subSubSection>
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<subSubSection pageId="0" pageNumber="49" type="etymology">
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<paragraph pageId="0" pageNumber="49">Etymology.</paragraph>
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<paragraph pageId="0" pageNumber="49">
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<taxonomicName authorityName="Hern. - Restr., L. W. Hou, L. Cai & Crous" authorityYear="2020" class="Dothideomycetes" family="Didymellaceae" genus="Paraboeremia" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="truiniorum" order="Pleosporales" pageId="0" pageNumber="49" phylum="Ascomycota" rank="species" species="truiniorum">
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<emphasis italics="true" pageId="0" pageNumber="49">truiniorum</emphasis>
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</taxonomicName>
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refers to Cuno & Tygo Truin who collected the soil sample from which the ex-type strain was isolated.
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</paragraph>
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</subSubSection>
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<subSubSection pageId="0" pageNumber="49" type="typus">
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<paragraph pageId="0" pageNumber="49">Typus.</paragraph>
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<paragraph pageId="0" pageNumber="49">
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The Netherlands. Gelderland province, Barneveld, Voorthuizen, isolated from garden soil, Mar. 2017, C. Truin & T. Truin (
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<emphasis bold="true" italics="true" pageId="0" pageNumber="49">holotype</emphasis>
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designated here CBS H-24108, living ex-type culture CBS 144952 = JW 47002).
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</paragraph>
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<paragraph pageId="0" pageNumber="49">
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<emphasis italics="true" pageId="0" pageNumber="49">Conidiomata</emphasis>
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pycnidial, superficial, scattered or aggregated, most solitary, globose or subglobose, confluent and irregularly-shaped with age, pale brown, thick-walled, covered with abundant mycelial outgrowths, 160-420
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<normalizedToken originalValue="×">x</normalizedToken>
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135-430
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<normalizedToken originalValue="μm">μm</normalizedToken>
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; 1-papillate or non-papillate ostioles, sometimes elongated to a short neck; pycnidial wall pseudoparenchymatous, 7-11 layers, 40-70
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<normalizedToken originalValue="μm">μm</normalizedToken>
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thick, outer layers composed of brown, flattened polygonal cells of 22-45.5
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<normalizedToken originalValue="μm">μm</normalizedToken>
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diam.
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<emphasis italics="true" pageId="0" pageNumber="49">Conidiogenous cells</emphasis>
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phialidic, hyaline, smooth, globose, subglobose, ampulliform or doliiform, 4.5-8.5
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<normalizedToken originalValue="×">x</normalizedToken>
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4-7
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<normalizedToken originalValue="μm">μm</normalizedToken>
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.
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<emphasis italics="true" pageId="0" pageNumber="49">Conidia</emphasis>
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ellipsoidal to oblong, thin- and smooth-walled, hyaline, aseptate, 3.5-5
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<normalizedToken originalValue="×">x</normalizedToken>
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2-3
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<normalizedToken originalValue="μm">μm</normalizedToken>
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, with (1-)2 large guttules.
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<taxonomicName genus="Conidial" lsidName="Conidial matrix" pageId="0" pageNumber="49" rank="species" species="matrix">
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<emphasis italics="true" pageId="0" pageNumber="49">Conidial matrix</emphasis>
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</taxonomicName>
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whitish.
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</paragraph>
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</subSubSection>
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<subSubSection pageId="0" pageNumber="49" type="description">
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<paragraph pageId="0" pageNumber="49">Culture characteristics.</paragraph>
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<paragraph pageId="0" pageNumber="49">Colonies after 7 d at 25 °C, on OA reaching 70-75 mm diam, aerial mycelium floccose, vinaceous buff to hazel, margin regular; reverse buff to olivaceous. On MEA reaching 65-70 mm diam, aerial mycelium felty, whitish, pale mouse grey toward periphery, margin regular; reverse dark brick to dark brown, with pale brown edge. On PDA reaching 75-80 mm diam, aerial mycelium felty, olivaceous buff to pale mouse grey, olivaceous toward periphery, margin irregular; reverse mouse grey, olivaceous toward periphery. NaOH spot test negative on OA.</paragraph>
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</subSubSection>
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<subSubSection pageId="0" pageNumber="49" type="materials_examined">
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<paragraph pageId="0" pageNumber="49">Additional specimens examined.</paragraph>
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<paragraph pageId="0" pageNumber="49">The Netherlands, Gelderland province, Culemborg, isolated from garden soil, Mar. 2017, R. Fuld, JW 182014; The Netherlands. South Holland province, Alphen aan den Rijn, isolated from garden soil, Mar. 2017, K. Boutwell, CBS 144961 = JW 203021; The Netherlands. South Holland province, Gorinchem, isolated from garden soil, Mar. 2017, L. van Rosmalen, JW 270002; The Netherlands. Utrecht province, Utrecht, isolated from garden soil, Mar. 2017, L. van Rijnberk, JW 147025; The Netherlands. Utrecht province, Woerden, isolated from garden soil, Mar. 2017, L. Borsboom, JW 192003.</paragraph>
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</subSubSection>
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<subSubSection pageId="0" pageNumber="49" type="notes">
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<paragraph pageId="0" pageNumber="49">Notes.</paragraph>
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<paragraph pageId="0" pageNumber="49">
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Based on the phylogenetic analyses,
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<taxonomicName lsidName="P. truiniorum" pageId="0" pageNumber="49" rank="species" species="truiniorum">
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<emphasis italics="true" pageId="0" pageNumber="49">P. truiniorum</emphasis>
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</taxonomicName>
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is represented by six isolates, forming a distinct lineage (Figure
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<figureCitation captionStart="Figure 1" captionStartId="F1" captionText="Figure 1. Phylogenetic tree generated from the maximum-likelihood analysis based on the combined ITS, LSU, tub 2 and rpb 2 sequence alignment of Didymellaceae members. The RAxML bootstrap support values (BS), Bayesian posterior probabilities (PP), and parsimony bootstrap support values (PBS) are given at the nodes (BS / PP / PBS). BS and PBS values represent parsimony bootstrap support values> 50 %. Full supported branches are indicated in bold. The scale bar represents the expected number of changes per site. Ex-type strains are represented in bold. Strains obtained in the current study are printed in green; among them, whilst strains that represent new taxa are printed in red. Some of the basal branches were shortened to facilitate layout (the fraction in round parentheses refers to the presented length compared to the actual length of the branch). The tree was rooted to Coniothyrium palmarum CBS 400.71 and Leptosphaeria doliolum CBS 505.75." figureDoi="10.3897/mycokeys.65.47704.figure1" httpUri="https://binary.pensoft.net/fig/388204" pageId="0" pageNumber="49">1</figureCitation>
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).
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<taxonomicName authorityName="Hern. - Restr., L. W. Hou, L. Cai & Crous" authorityYear="2020" class="Dothideomycetes" family="Didymellaceae" genus="Paraboeremia" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Paraboeremia truiniorum" order="Pleosporales" pageId="0" pageNumber="49" phylum="Ascomycota" rank="species" species="truiniorum">
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<emphasis italics="true" pageId="0" pageNumber="49">Paraboeremia truiniorum</emphasis>
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</taxonomicName>
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is characterised by the dense mycelial outgrowths on its pycnidia. Both
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<taxonomicName lsidName="P. truiniorum" pageId="0" pageNumber="49" rank="species" species="truiniorum">
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<emphasis italics="true" pageId="0" pageNumber="49">P. truiniorum</emphasis>
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</taxonomicName>
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and
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<taxonomicName lsidName="P. rekkeri" pageId="0" pageNumber="49" rank="species" species="rekkeri">
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<emphasis italics="true" pageId="0" pageNumber="49">P. rekkeri</emphasis>
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</taxonomicName>
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are phylogenetically close to the well-known soil-borne species,
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<taxonomicName lsidName="P. putaminum" pageId="0" pageNumber="49" rank="species" species="putaminum">
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<emphasis italics="true" pageId="0" pageNumber="49">P. putaminum</emphasis>
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</taxonomicName>
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. However,
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<taxonomicName lsidName="P. putaminum" pageId="0" pageNumber="49" rank="species" species="putaminum">
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<emphasis italics="true" pageId="0" pageNumber="49">P. putaminum</emphasis>
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</taxonomicName>
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is distinguished from these two new species by producing smaller conidia (3.2-4.2
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<normalizedToken originalValue="×">x</normalizedToken>
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2-2.6
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<normalizedToken originalValue="μm">μm</normalizedToken>
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) with greenish guttules (
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<bibRefCitation DOI="https://doi.org/10.1079/9780851997438.0000" author="Boerema, GH" journalOrPublisher="Persoonia" pageId="0" pageNumber="49" refId="B10" refString="Boerema, GH, de Gruyter, J, Noordeloos, ME, Hamers, MEC, 2004. Phoma identification manual. Differentiation of specific and infra-specific taxa in culture. CABI Publishing, 1-467. https://doi.org/10.1079/9780851997438.0000" title="Phoma identification manual. Differentiation of specific and infra-specific taxa in culture. CABI Publishing, 1 - 467." url="https://doi.org/10.1079/9780851997438.0000" year="2004">Boerema et al 2004</bibRefCitation>
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).
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</paragraph>
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<caption doi="10.3897/mycokeys.65.47704.figure8" httpUri="https://binary.pensoft.net/fig/388211" pageId="0" pageNumber="49" start="Figure 8" startId="F8">
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<paragraph pageId="0" pageNumber="49">
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<emphasis bold="true" pageId="0" pageNumber="49">Figure 8.</emphasis>
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<taxonomicName authorityName="Hern. - Restr., L. W. Hou, L. Cai & Crous" authorityYear="2020" class="Dothideomycetes" family="Didymellaceae" genus="Paraboeremia" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Paraboeremia truiniorum" order="Pleosporales" pageId="0" pageNumber="49" phylum="Ascomycota" rank="species" species="truiniorum">
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<emphasis italics="true" pageId="0" pageNumber="49">Paraboeremia truiniorum</emphasis>
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</taxonomicName>
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(CBS 144952).
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<emphasis bold="true" pageId="0" pageNumber="49">A, B</emphasis>
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Colony on OA (front and reverse)
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<emphasis bold="true" pageId="0" pageNumber="49">C, D</emphasis>
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colony on MEA (front and reverse)
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<emphasis bold="true" pageId="0" pageNumber="49">E, F</emphasis>
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colony on PDA (front and reverse)
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<emphasis bold="true" pageId="0" pageNumber="49">G</emphasis>
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pycnidia forming on OA
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<emphasis bold="true" pageId="0" pageNumber="49">H</emphasis>
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pycnidium
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<emphasis bold="true" pageId="0" pageNumber="49">I</emphasis>
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section of pycnidium
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<emphasis bold="true" pageId="0" pageNumber="49">J</emphasis>
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section of pycnidial wall
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<emphasis bold="true" pageId="0" pageNumber="49">K-N</emphasis>
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conidiogenous cells
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<emphasis bold="true" pageId="0" pageNumber="49">O</emphasis>
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conidia. Scale bars: 20
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<normalizedToken originalValue="μm">μm</normalizedToken>
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(
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<emphasis bold="true" pageId="0" pageNumber="49">H</emphasis>
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); 50
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<normalizedToken originalValue="μm">μm</normalizedToken>
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(
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<emphasis bold="true" pageId="0" pageNumber="49">I</emphasis>
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); 5
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<normalizedToken originalValue="μm">μm</normalizedToken>
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(
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<emphasis bold="true" pageId="0" pageNumber="49">J-O</emphasis>
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).
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</paragraph>
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</caption>
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</subSubSection>
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</treatment>
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</document> |