203 lines
18 KiB
XML
203 lines
18 KiB
XML
<document id="8B641FD47510758F11F9FFC296BDB4BF" ID-CLB-Dataset="30385" ID-DOI="http://dx.doi.org/10.3897/mycokeys.33.23670" ID-GBIF-Dataset="42cbc858-8729-4618-9467-590ea7ca068e" ID-PMC="PMC6283267" ID-Pensoft-Pub="1314-4049-33-25" ID-PubMed="30532625" ModsDocAuthor="" ModsDocDate="2018" ModsDocID="1314-4049-33-25" ModsDocOrigin="MycoKeys 33" ModsDocTitle="Identification of endophytic fungi from leaves of Pandanaceae based on their morphotypes and DNA sequence data from southern Thailand" checkinTime="1522305991188" checkinUser="pensoft" docAuthor="Tibpromma, Saowaluck, Hyde, Kevin D., Bhat, Jayarama D., Mortimer, Peter E., Xu, Jianchu, Promputtha, Itthayakorn, Doilom, Mingkwan, Yang, Jun-Bo, Tang, Alvin M. C. & Karunarathna, Samantha C." docDate="2018" docId="B1D766B403ACC7C8D4CD520C2EDED711" docLanguage="en" docName="MycoKeys 33: 25-67" docOrigin="MycoKeys 33" docSource="http://dx.doi.org/10.3897/mycokeys.33.23670" docTitle="Cladosporium endophyticum Tibpromma & K. D. Hyde, sp. nov." docType="treatment" docVersion="8" lastPageNumber="36" masterDocId="B85B6F41CC50A742FFD77F5B3B598C43" masterDocTitle="Identification of endophytic fungi from leaves of Pandanaceae based on their morphotypes and DNA sequence data from southern Thailand" masterLastPageNumber="67" masterPageNumber="25" pageNumber="36" updateTime="1732677854369" updateUser="ExternalLinkService">
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<mods:title id="F672AB69533023DA21E3770CA33ABDB2">Identification of endophytic fungi from leaves of Pandanaceae based on their morphotypes and DNA sequence data from southern Thailand</mods:title>
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<mods:namePart id="6E9C60A4C1B7D61251CE0AB1F974A993">Tibpromma, Saowaluck</mods:namePart>
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<mods:namePart id="8B1090568D3744A501E99FBB43B8709F">Hyde, Kevin D.</mods:namePart>
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<mods:namePart id="85C6185AB984678D7D66225E4A9610A9">Bhat, Jayarama D.</mods:namePart>
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<mods:namePart id="4F0BC57CD3EB33FE872D23A47D783384">Mortimer, Peter E.</mods:namePart>
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<mods:namePart id="FDB7382C3EF65D6A53B31749F109BE1F">Xu, Jianchu</mods:namePart>
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<mods:namePart id="E46B0A322B39BF7E77D8E286DAA098AB">Promputtha, Itthayakorn</mods:namePart>
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<mods:namePart id="CBCAB55FBD1CF12B4CBB3BE308AD2FBD">Doilom, Mingkwan</mods:namePart>
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<mods:namePart id="D1AFBB3EDFA380A3489A5C0FD8202E6B">Yang, Jun-Bo</mods:namePart>
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<mods:namePart id="6D6F8DC7443C585CCCA97FAA26D3F175">Tang, Alvin M. C.</mods:namePart>
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<mods:namePart id="190AB9110F83CD12E7EEBA1FC2F53362">Karunarathna, Samantha C.</mods:namePart>
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<mods:typeOfResource id="9F4C7294F10145B9318A3F95078E4EFD">text</mods:typeOfResource>
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<mods:title id="1F6CCE04B313D4CB8F16996ED77371A3">MycoKeys</mods:title>
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<mods:date id="279A70D159D2EB9D8896245556ACA853">2018</mods:date>
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<mods:number id="0FA48E09744AE6D6C9561B06D5658AB9">33</mods:number>
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<mods:start id="BC2AE4E39DDD94AE66CE5BAB56A375BB">25</mods:start>
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<mods:end id="205539986A77239F242A7A55E09C4B51">67</mods:end>
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<mods:url id="276E0A8A965D4C961B31358620381DC7">http://dx.doi.org/10.3897/mycokeys.33.23670</mods:url>
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<mods:classification id="D9849D285DC71FDF0F2EF7B643F0F45C">journal article</mods:classification>
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<mods:identifier id="C999FFA87169721704524249E20048A9" type="DOI">http://dx.doi.org/10.3897/mycokeys.33.23670</mods:identifier>
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<mods:identifier id="74DAD4B16BC26CA130A01BC39443F066" type="Pensoft-Pub">1314-4049-33-25</mods:identifier>
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<treatment id="B1D766B403ACC7C8D4CD520C2EDED711" ID-GBIF-Taxon="142664206" LSID="urn:lsid:plazi:treatment:B1D766B403ACC7C8D4CD520C2EDED711" httpUri="http://treatment.plazi.org/id/B1D766B403ACC7C8D4CD520C2EDED711" lastPageNumber="36" pageId="11" pageNumber="36" scope_order="Capnodiales" scope_phylum="Ascomycota">
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<subSubSection id="6C576E85A9E0AE573AFA984F6518DA2C" pageId="11" pageNumber="36" type="nomenclature">
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<paragraph id="0D04F81C0C9FCCE20F13574C29B6A48D" pageId="11" pageNumber="36">
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<taxonomicName id="49201A46A9265E84720BBA9134482EC6" ID-CoL="VQ44" LSID=" MB823838" authority="Tibpromma & K. D. Hyde" class="Dothideomycetes" family="Cladosporiaceae" genus="Cladosporium" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Cladosporium endophyticum" order="Capnodiales" pageId="11" pageNumber="36" phylum="Ascomycota" rank="species" species="endophyticum">Cladosporium endophyticum Tibpromma & K.D. Hyde</taxonomicName>
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<taxonomicNameLabel id="B66ACE4C43682293CE1AD2810285309A" pageId="11" pageNumber="36">sp. nov.</taxonomicNameLabel>
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Figure 8
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</paragraph>
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</subSubSection>
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<subSubSection id="366F4B53BF746E237E55BDA71E2B0C9C" pageId="11" pageNumber="36" type="etymology">
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<paragraph id="2DBE9827BCEFF6C5B5113DAA7AB2F762" pageId="11" pageNumber="36">Etymology.</paragraph>
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<paragraph id="1EB1B38724E8A5B3ADA3585C2D5DFADD" pageId="11" pageNumber="36">named after its status as an endophytic fungus.</paragraph>
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</subSubSection>
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<subSubSection id="39774F14C1FAEEB124FD3939417B1D79" pageId="11" pageNumber="36" type="holotype">
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<paragraph id="428072D5918743AED57B416F4BAE4FD3" pageId="11" pageNumber="36">Holotype.</paragraph>
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<paragraph id="26FE4EF41040E5CCCF51588B8EFB7262" pageId="11" pageNumber="36">MFLU 18-0005</paragraph>
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</subSubSection>
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<subSubSection id="EC7330AAFF0558E7FA8612E8D0B65812" pageId="11" pageNumber="36" type="description">
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<paragraph id="E857CF645D19FE8E4F7F82C5383CEADA" pageId="11" pageNumber="36">Description.</paragraph>
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<paragraph id="6CD4671694A59D6B9329C91AD786D73B" pageId="11" pageNumber="36">
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<taxonomicName id="579254C81695DA25A3ACBB1AB98E63C1" genus="Colonies" lsidName="Colonies" pageId="11" pageNumber="36" rank="genus">Colonies</taxonomicName>
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on PDA attaining 9 cm diam. in six weeks at room temperature, slow growing, dark olivaceous.
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<taxonomicName id="BF4A6E54B999ED168A6ED61A75E42205" genus="Mycelium" lsidName="Mycelium" pageId="11" pageNumber="36" rank="genus">Mycelium</taxonomicName>
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superficial and immersed composed of septate, branched, 2.3-4.5
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<normalizedToken id="4F213C3D7817F0CAED5B6E386A57F85A" originalValue="µm">µm</normalizedToken>
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wide, sub-hyaline, with smooth and thick-walled hyphae. Sexual morph Undetermined. Asexual morph
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<taxonomicName id="281E41143CF470EE45889BF8AB2C8F8D" genus="Conidiophores" lsidName="Conidiophores" pageId="11" pageNumber="36" rank="genus">Conidiophores</taxonomicName>
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6-10
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<normalizedToken id="A3D7B35D004F022452F3B62422A6304A" originalValue="µm">µm</normalizedToken>
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high, 3-4
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<normalizedToken id="80EF96DD6D0E4854DFB8F711206CECA0" originalValue="µm">µm</normalizedToken>
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diam. (x̄ = 8.24
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<normalizedToken id="3F89E65D7E1C82DE74A17593CF03BA45" originalValue="×">x</normalizedToken>
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3.52
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<normalizedToken id="3794C177884668B59E4674E6D992D4DB" originalValue="µm">µm</normalizedToken>
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, n = 10), terminal and intercalary, cylindrical or sub-cylindrical, darkened conidiogenous loci.
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<taxonomicName id="EB2C5FFB117F72E7419DD7D69BAAB520" genus="Conidia" lsidName="Conidia" pageId="11" pageNumber="36" rank="genus">Conidia</taxonomicName>
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3-6
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<normalizedToken id="6C10E43FE0B219E2B900BB29E957CD30" originalValue="×">x</normalizedToken>
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2-4
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<normalizedToken id="66474CA467F200639FCB5A4C97AFFE72" originalValue="µm">µm</normalizedToken>
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(x̄ = 3.64
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<normalizedToken id="BFEB9FD307423FC3CBB1B188D4D9CBD6" originalValue="×">x</normalizedToken>
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2.75
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<normalizedToken id="2731778325A1285392C511F415941AFB" originalValue="µm">µm</normalizedToken>
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, n = 30), forming long branched chains, hyaline to pale-olivaceous, smooth and thin-walled, aseptate, globose to ovoid with rounded ends.
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</paragraph>
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</subSubSection>
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<subSubSection id="098670E637337F9822F1D40E6C50F152" pageId="11" pageNumber="36" type="description">
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<paragraph id="7D3C4A0DE69B4A6F27186A4EE297AE00" pageId="11" pageNumber="36">Culture characteristics.</paragraph>
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<paragraph id="C8B51EAEE7436B96B721C37D381B6C6A" pageId="11" pageNumber="36">
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<taxonomicName id="206F0662C7BD47AFA8905D9248ADA645" genus="Colonies" lsidName="Colonies" pageId="11" pageNumber="36" rank="genus">Colonies</taxonomicName>
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on PDA (Figure 2, PE58), superficial, dark olivaceous with dark-grey centre, irregular, undulate with wrinkled and raised on surface media; reverse dark olivaceous. Generative hyphae simple-septate, branched, sub-hyaline, guttules, thick-walled (Figure 8).
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</paragraph>
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<caption id="17AD7A9C439E52F96FA75C5CBCF8B141" pageId="11" pageNumber="36">
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<paragraph id="23BBDC43F90A1AE8EA98C4BBE262937D" pageId="11" pageNumber="36">
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Figure 8.
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<taxonomicName id="9C000939338A802478B4CDC3C907C1F4" class="Dothideomycetes" family="Cladosporiaceae" genus="Cladosporium" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Cladosporium endophyticum" order="Capnodiales" pageId="11" pageNumber="36" phylum="Ascomycota" rank="species" species="endophyticum">Cladosporium endophyticum</taxonomicName>
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(MFLU 18-0005, holotype). a Colony on MEA media b
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<taxonomicName id="B673334F73EFB215C06390A3957FE690" genus="Mycelium" lsidName="Mycelium" pageId="11" pageNumber="36" rank="genus">Mycelium</taxonomicName>
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masses
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<normalizedToken id="431CA19A4266449CA5092ED45824AE1A" originalValue="c–e">c-e</normalizedToken>
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<taxonomicName id="C790B6A2DE076C6854EE7526E1C14448" genus="Conidia" lsidName="Conidia" pageId="11" pageNumber="36" rank="genus">Conidia</taxonomicName>
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and conidiogenous cells f, g
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<taxonomicName id="E8AE1865673C150B68EA3EF04B8EBFB4" genus="Conidia" lsidName="Conidia" pageId="11" pageNumber="36" rank="genus">Conidia</taxonomicName>
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h
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<taxonomicName id="FFC7E34D5837EF437FB6C48729FEB6AF" genus="Conidia" lsidName="Conidia" pageId="11" pageNumber="36" rank="genus">Conidia</taxonomicName>
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and conidiogenous cells. Scale bars: 5
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<normalizedToken id="C354F12B7F719C0E1200E844EE6B6096" originalValue="µm">µm</normalizedToken>
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(
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<normalizedToken id="97C30EAD26946E480BAF6DE09B61A267" originalValue="b–h">b-h</normalizedToken>
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), 10
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<normalizedToken id="823E0269964897D8B23BAE2B2E55D76B" originalValue="µm">µm</normalizedToken>
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(h).
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</paragraph>
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</caption>
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</subSubSection>
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<subSubSection id="CF180B5977ACDFA907D86343D9028416" pageId="11" pageNumber="36" type="materials_examined">
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<paragraph id="1CFE0F2D26C5E60FE7CE876034EBA6D9" pageId="11" pageNumber="36">Material examined.</paragraph>
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<paragraph id="7E9B14DA7176B9D5D9B93D9929C018B8" pageId="11" pageNumber="36">
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THAILAND, Chumphon, Pathio District, on healthy leaves of
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<taxonomicName id="FBD43EA0BD827464A2AE6243DA37CF74" class="Liliopsida" family="Pandanaceae" genus="Pandanus" higherTaxonomySource="CoL" kingdom="Plantae" lsidName="Pandanus" order="Pandanales" pageId="11" pageNumber="36" phylum="Tracheophyta" rank="genus">Pandanus</taxonomicName>
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sp. (
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<taxonomicName id="8D99D8FF21B6D4BCAEB9270486678EBF" class="Liliopsida" family="Pandanaceae" higherTaxonomySource="CoL" kingdom="Plantae" lsidName="Mycelium" order="Pandanales" pageId="11" pageNumber="36" phylum="Tracheophyta" rank="family">Pandanaceae</taxonomicName>
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), 1 December 2016, S. Tibpromma PE58 (MFLU 18-0005, holotype); HKAS100855, paratype, ex-type living cultures, MFLUCC 17-0599 = KUMCC 17-0294.
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</paragraph>
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</subSubSection>
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<subSubSection id="95E306830FF9E93F4549FFB4F5FBA8AE" pageId="11" pageNumber="36" type="genbank numbers">
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<paragraph id="2708B9E2619A929D23751F84F32AEA4D" pageId="11" pageNumber="36">GenBank numbers.</paragraph>
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<paragraph id="E68B0EBAF0441F43188927E18D4246BB" pageId="11" pageNumber="36">ITS=MG646956, LSU=MG646949, SSU=MG646981, TEF1=MG646988.</paragraph>
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</subSubSection>
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<subSubSection id="BD63E92412A8F9C3418703291294FAA3" pageId="11" pageNumber="36" type="notes">
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<paragraph id="4FAE8A128B88EF7C88AA05646732934A" pageId="11" pageNumber="36">Notes.</paragraph>
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<paragraph id="9B7B689A3D05F9B20917AD79A1C4E544" pageId="11" pageNumber="36">
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<taxonomicName id="14A22062964CBB1DFE1F6E29D9445216" class="Dothideomycetes" family="Cladosporiaceae" genus="Cladosporium" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Cladosporium endophyticum" order="Capnodiales" pageId="11" pageNumber="36" phylum="Ascomycota" rank="species" species="endophyticum">Cladosporium endophyticum</taxonomicName>
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was isolated as an endophyte from
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<taxonomicName id="887C2DF45FEE906FC5859004E211183C" class="Liliopsida" family="Pandanaceae" genus="Pandanus" higherTaxonomySource="CoL" kingdom="Plantae" lsidName="Pandanus" order="Pandanales" pageId="11" pageNumber="36" phylum="Tracheophyta" rank="genus">Pandanus</taxonomicName>
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sp. in Thailand. In the phylogenetic analysis of combined gene sequence data of ITS, LSU, SSU and TEF1, the new taxon
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<taxonomicName id="37D70FC79FDA55C0C9F9085265FEE1BA" class="Dothideomycetes" family="Cladosporiaceae" genus="Cladosporium" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Cladosporium endophyticum" order="Capnodiales" pageId="11" pageNumber="36" phylum="Ascomycota" rank="species" species="endophyticum">Cladosporium endophyticum</taxonomicName>
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is sister to
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<taxonomicName id="FD1FB18CA1C7033A33BF931B7BEB605C" lsidName="C. halotolerans" pageId="11" pageNumber="36" rank="species" species="halotolerans">C. halotolerans</taxonomicName>
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(Figure 7), but well-separated with high bootstrap support (90% in ML). Moreover, the morphology of this new taxon was compared with
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<taxonomicName id="5B825A8DC7F16DD2A4A78DD419660E9B" class="Dothideomycetes" family="Cladosporiaceae" genus="Cladosporium" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Cladosporium halotolerans" order="Capnodiales" pageId="11" pageNumber="36" phylum="Ascomycota" rank="species" species="halotolerans">Cladosporium halotolerans</taxonomicName>
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which has brown to dark brown, subglobose to globose with verrucose, less often short-ovoid conidia, narrower at both ends (
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<bibRefCitation id="480EAF047D193BFB353506BCE5E7464F" author="Zalar, P" journalOrPublisher="Studies in Mycology" pageId="38" pageNumber="63" pagination="157 - 183" title="Phylogeny and ecology of the ubiquitous saprobe Cladosporiumsphaerospermum, with descriptions of seven new species from hypersaline environments." url="https://doi.org/10.3114/sim.2007.58.06" volume="58" year="2007">Zalar et al. 2007</bibRefCitation>
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), while
|
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<taxonomicName id="0D5F40E83C8344D26C78F05BC71F15FE" lsidName="C. endophyticum" pageId="11" pageNumber="36" rank="species" species="endophyticum">C. endophyticum</taxonomicName>
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has globose to ovoid, hyaline to pale-olivaceous conidia with rounded ends. Here, the authors introduce the new species
|
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<taxonomicName id="166C866751C2A1CF777C67FCA7A74E6A" lsidName="C. endophyticum" pageId="11" pageNumber="36" rank="species" species="endophyticum">C. endophyticum</taxonomicName>
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and provide an updated phylogenetic tree for the genus
|
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<taxonomicName id="0EA032FBA4830E15D2E8BD9AE971E0BD" class="Dothideomycetes" family="Cladosporiaceae" genus="Cladosporium" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Cladosporium" order="Capnodiales" pageId="11" pageNumber="36" phylum="Ascomycota" rank="genus">Cladosporium</taxonomicName>
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.
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||
</paragraph>
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||
</subSubSection>
|
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</treatment>
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</document> |