171 lines
16 KiB
XML
171 lines
16 KiB
XML
<document id="C290275136BE22EE44ED40347FEACC8C" ID-CLB-Dataset="20532" ID-DOI="10.1099/ijsem.0.004334" ID-GBIF-Dataset="6de3e82d-6d2b-4eb3-9a14-de06f788712d" ID-ISSN="1466-5034" ID-Zenodo-Dep="6224005" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_requiresApprovalFor="existingObjects,plazi" IM.taxonomicNames_approvedBy="felipe" checkinTime="1645465970695" checkinUser="felipe" docAuthor="Park, Mi-Jeong, Namirimu, Teddy, Yang, Sung-Hyun & Kwon, Kae Kyoung" docDate="2020" docId="2D0B878EFF8AFFE57055FCC7FD84FEED" docLanguage="en" docName="IntJSystEvolMicrobiol.70.8.4691-4697.pdf" docOrigin="International Journal of Systematic and Evolutionary Microbiology 70 (8)" docSource="http://dx.doi.org/10.1099/ijsem.0.004334" docStyle="DocumentStyle:C64F0A4F4C66F6FC2AD4ED89351C6242.3:IntJSystEvolMicrobiol.2017-.journal_article" docStyleId="C64F0A4F4C66F6FC2AD4ED89351C6242" docStyleName="IntJSystEvolMicrobiol.2017-.journal_article" docStyleVersion="3" docTitle="Luteithermobacter gelatinilyticus Park & Namirimu & Yang & Kwon 2020, SP. NOV." docType="treatment" docVersion="9" lastPageNumber="4695" masterDocId="D132FFF6FF8EFFE07369FFAFFFBDFFE1" masterDocTitle="Description of Luteithermobacter gelatinilyticus gen. nov., sp. nov., and Paremcibacter congregatus gen. nov., comb. nov. via reclassification of the genus Emcibacter" masterLastPageNumber="4697" masterPageNumber="4691" pageNumber="4695" updateTime="1702002061787" updateUser="plazi">
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<mods:title id="C6B2F82E6C7BD7FA8F7B598C3FB3E02D">Description of Luteithermobacter gelatinilyticus gen. nov., sp. nov., and Paremcibacter congregatus gen. nov., comb. nov. via reclassification of the genus Emcibacter</mods:title>
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<mods:namePart id="CBE849FD397BB1A44A86A0BB83744744">Park, Mi-Jeong</mods:namePart>
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<mods:namePart id="5ED36E6F846E3D2D1BF4573923F41807">Namirimu, Teddy</mods:namePart>
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<mods:namePart id="4B4AA80C0C0744E2997194FB3817818F">Yang, Sung-Hyun</mods:namePart>
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<mods:namePart id="A642176A026B8BEFD9F6AFE19633C14C">Kwon, Kae Kyoung</mods:namePart>
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<mods:title id="8EBD8198F7C2A7200C6DB7479D3B85EA">International Journal of Systematic and Evolutionary Microbiology</mods:title>
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<mods:part id="C7E754AE65AD76B92ADA89CB3C0CB68D">
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<mods:date id="484D9105C7204486AE420DD5106AD0C2">2020</mods:date>
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<mods:number id="F3CE3797D1C05EA163422096DAE76B30">2020-08-01</mods:number>
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<mods:number id="F712D84DD792BDA2CD002224085EDAC6">70</mods:number>
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<treatment id="2D0B878EFF8AFFE57055FCC7FD84FEED" ID-DOI="http://doi.org/10.5281/zenodo.6314490" ID-GBIF-Taxon="193513717" ID-Zenodo-Dep="6314490" LSID="urn:lsid:plazi:treatment:2D0B878EFF8AFFE57055FCC7FD84FEED" httpUri="http://treatment.plazi.org/id/2D0B878EFF8AFFE57055FCC7FD84FEED" lastPageId="5" lastPageNumber="4695" pageId="4" pageNumber="4695">
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<subSubSection id="EDB86513FF8AFFE47055FCC7FB17FC4B" pageId="4" pageNumber="4695" type="nomenclature">
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<paragraph id="A51D3698FF8AFFE47055FCC7FB17FC4B" blockId="4.[822,1473,872,1957]" pageId="4" pageNumber="4695">
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<heading id="FE5581F4FF8AFFE47055FCC7FB17FC4B" allCaps="true" bold="true" fontSize="12" level="2" pageId="4" pageNumber="4695" reason="3">
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<emphasis id="97D6EA8AFF8AFFE47055FCC7FB17FC4B" bold="true" pageId="4" pageNumber="4695">
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DESCRIPTION OF
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<taxonomicName id="62A24D1BFF8AFFE4775CFCC7FB92FC4B" authority="Park & Namirimu & Yang & Kwon, 2020" authorityName="Park & Namirimu & Yang & Kwon" authorityYear="2020" class="Alphaproteobacteria" family="Emcibacteraceae" genus="Luteithermobacter" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Sphingomonadales" pageId="4" pageNumber="4691" phylum="Proteobacteria" rank="species" species="gelatinilyticus" status="gen. nov., sp.">
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<emphasis id="97D6EA8AFF8AFFE4775CFCC7FB92FC4B" bold="true" italics="true" pageId="4" pageNumber="4695">LUTEITHERMOBACTER GELATINILYTICUS</emphasis>
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</taxonomicName>
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<taxonomicNameLabel id="8CE557F1FF8AFFE4775EFC22FB17FC4B" box="[1079,1194,909,938]" pageId="4" pageNumber="4695" rank="species">SP. NOV.</taxonomicNameLabel>
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</emphasis>
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</heading>
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</paragraph>
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</subSubSection>
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<subSubSection id="EDB86513FF8AFFE47055FC18FB20FBCA" pageId="4" pageNumber="4695" type="etymology">
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<paragraph id="A51D3698FF8AFFE47055FC18FB20FBCA" blockId="4.[822,1473,872,1957]" pageId="4" pageNumber="4695">
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<taxonomicName id="62A24D1BFF8AFFE47055FC18FB1CFC2E" authorityName="Park & Namirimu & Yang & Kwon" authorityYear="2020" box="[828,1185,951,975]" class="Alphaproteobacteria" family="Emcibacteraceae" genus="Luteithermobacter" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Sphingomonadales" pageId="4" pageNumber="4695" phylum="Proteobacteria" rank="species" species="gelatinilyticus">
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<emphasis id="97D6EA8AFF8AFFE47055FC18FB1CFC2E" box="[828,1185,951,975]" italics="true" pageId="4" pageNumber="4695">Luteithermobacter gelatinilyticus</emphasis>
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</taxonomicName>
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(ge.la.ti.ni.ly′ ti.cus. N.L. neut. n.
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<emphasis id="97D6EA8AFF8AFFE470C9FC79FBB7FC0F" box="[928,1034,982,1006]" italics="true" pageId="4" pageNumber="4695">gelatinum</emphasis>
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gelatin; Gr. masc. adj.
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<emphasis id="97D6EA8AFF8AFFE47675FC79FADCFC0F" box="[1308,1377,982,1006]" italics="true" pageId="4" pageNumber="4695">lytikos</emphasis>
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able to dissolve; N.L. masc. adj.
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<emphasis id="97D6EA8AFF8AFFE47724FC5BFB2CFBED" box="[1101,1169,1012,1036]" italics="true" pageId="4" pageNumber="4695">lyticus</emphasis>
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dissolving; N.L. masc. adj.
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<taxonomicName id="62A24D1BFF8AFFE47057FBBCFC70FBCA" authorityName="Park & Namirimu & Yang & Kwon" authorityYear="2020" box="[830,973,1043,1067]" class="Alphaproteobacteria" family="Emcibacteraceae" genus="Luteithermobacter" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Sphingomonadales" pageId="4" pageNumber="4695" phylum="Proteobacteria" rank="species" species="gelatinilyticus">
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<emphasis id="97D6EA8AFF8AFFE47057FBBCFC70FBCA" box="[830,973,1043,1067]" italics="true" pageId="4" pageNumber="4695">gelatinilyticus</emphasis>
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</taxonomicName>
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gelatin-dissolving).
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</paragraph>
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</subSubSection>
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<subSubSection id="EDB86513FF8AFFE57055FBEEFD84FEED" lastPageId="5" lastPageNumber="4696" pageId="4" pageNumber="4695" type="description">
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<paragraph id="A51D3698FF8AFFE47055FBEEFA2AF8D8" blockId="4.[822,1473,872,1957]" pageId="4" pageNumber="4695">
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Cells are rod-shaped with a width of 0.4–0.5 µm and length of 1.5–2 µm. Colonies are
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<quantity id="625A9B7DFF8AFFE47738FBCFFB2DFB96" box="[1105,1168,1120,1144]" metricMagnitude="-3" metricUnit="m" metricValue="3.0" pageId="4" pageNumber="4695" unit="mm" value="3.0">3 mm</quantity>
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in diameter and pale yellow, with a circular, convex, entire edge, and a glistening surface on MA after 3 days of cultivation. Growth is observed at 35–59 °C (optimum 55 °C), at pH 6.0–9.0 (optimum pH 6.0) and with 1–9% (w/v) NaCl (optimum 2.5–3.5%) in the presence of KCl, MgCl
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<subScript id="392634DDFF8AFFE470A0FAA6FC6DFAF6" attach="left" box="[969,976,1289,1303]" fontSize="6" pageId="4" pageNumber="4695">2</subScript>
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and CaCl
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<subScript id="392634DDFF8AFFE47752FAA6FBFFFAF6" attach="left" box="[1083,1090,1289,1303]" fontSize="6" pageId="4" pageNumber="4695">2</subScript>
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. Nitrate is reduced to nitrite. Negative for indole production and cannot assimilate aesculin,
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<emphasis id="97D6EA8AFF8AFFE47055FA98FCF4FAAF" box="[828,841,1335,1358]" italics="true" pageId="4" pageNumber="4695">p</emphasis>
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-NP(nitrophenyl)-galactopyranoside or urea. However, 2-naphthyl phosphate, 2-naphthyl butyrate, 2-naphthyl caprylate, L-leucyl-2-naphthylamide,L-valyl-2-naphthylamide, L -cystyl-2-naphthylamide, 2-naphthyl phosphate, naphthol-AS- BI- phosphate, dextrin, cellobiose, turanose, lactose, D-fructose, D -sorbitol, D-arabitol,
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<emphasis id="97D6EA8AFF8AFFE47740FA7FFBE8FA06" box="[1065,1109,1488,1511]" italics="true" pageId="4" pageNumber="4695">myo</emphasis>
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-inositol,D-fructose 6-phosphate, D -aspartic acid, gelatin, L-arginine,L-histidine,L-serine, pectin, D -galacturonic acid,L-galactonic acid lactone,D-glucuronic acid, glucuronamide,
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<emphasis id="97D6EA8AFF8AFFE4708BF983FC52F9A2" box="[994,1007,1580,1603]" italics="true" pageId="4" pageNumber="4695">p</emphasis>
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-hydroxy-phenylacetic acid, methyl pyruvate, D-lactic acid methyl ester, α-ketobutyric acid, acetoacetic acid, propionic acid, acetic acid and formic acid can be assimilated. The major fatty acids include C
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<subScript id="392634DDFF8AFFE4771BF937FB36F947" attach="left" box="[1138,1163,1688,1702]" fontSize="6" pageId="4" pageNumber="4695">14:0</subScript>
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, C
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||
<subScript id="392634DDFF8AFFE477CFF937FB02F947" attach="left" box="[1190,1215,1688,1702]" fontSize="6" pageId="4" pageNumber="4695">16:0</subScript>
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, C ω6
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<emphasis id="97D6EA8AFF8AFFE47678F927FAA6F97E" box="[1297,1307,1672,1695]" italics="true" pageId="4" pageNumber="4695">c</emphasis>
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, C
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<subScript id="392634DDFF8AFFE4765FF937FAF2F947" attach="left" box="[1334,1359,1688,1702]" fontSize="6" pageId="4" pageNumber="4695">19:0</subScript>
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cyclo ω8
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<emphasis id="97D6EA8AFF8AFFE476C2F927FA08F97E" box="[1451,1461,1672,1695]" italics="true" pageId="4" pageNumber="4695">c</emphasis>
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, C 2-OH, summed feature 3 (C
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<subScript id="392634DDFF8AFFE477F0F919FB0FF925" attach="both" box="[1177,1202,1718,1732]" fontSize="6" pageId="4" pageNumber="4695">16:1</subScript>
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ω6
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<emphasis id="97D6EA8AFF8AFFE477B9F908FB67F95F" box="[1232,1242,1703,1726]" italics="true" pageId="4" pageNumber="4695">c</emphasis>
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and/or C
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<subScript id="392634DDFF8AFFE47628F919FAE7F925" attach="right" box="[1345,1370,1718,1732]" fontSize="6" pageId="4" pageNumber="4695">16:1</subScript>
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ω7
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<emphasis id="97D6EA8AFF8AFFE47610F908FA3EF95F" box="[1401,1411,1703,1726]" italics="true" pageId="4" pageNumber="4695">c</emphasis>
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) and summed feature 8 (C
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<subScript id="392634DDFF8AFFE4777BF97AFB96F902" attach="right" box="[1042,1067,1749,1763]" fontSize="6" pageId="4" pageNumber="4695">18:1</subScript>
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ω7
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<emphasis id="97D6EA8AFF8AFFE47720F969FBEEF93C" box="[1097,1107,1734,1757]" italics="true" pageId="4" pageNumber="4695">c</emphasis>
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and/or C
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<subScript id="392634DDFF8AFFE477DAF97AFB71F902" attach="both" box="[1203,1228,1749,1763]" fontSize="6" pageId="4" pageNumber="4695">18:1</subScript>
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ω6
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<emphasis id="97D6EA8AFF8AFFE47783F969FB49F93C" box="[1258,1268,1734,1757]" italics="true" pageId="4" pageNumber="4695">c</emphasis>
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). The predominant polar lipids include phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylglycerol, an unidentified phospholipid, three unidentified aminolipids and two unidentified lipids.
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</paragraph>
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<paragraph id="A51D3698FF8AFFE477B3F937FB49F947" blockId="4.[822,1473,872,1957]" box="[1242,1268,1688,1702]" pageId="4" pageNumber="4695">
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<subScript id="392634DDFF8AFFE477B3F937FB49F947" attach="both" box="[1242,1268,1688,1702]" fontSize="6" pageId="4" pageNumber="4695">17:1</subScript>
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</paragraph>
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<paragraph id="A51D3698FF8AFFE47024F919FCDBF925" blockId="4.[822,1473,872,1957]" box="[845,870,1718,1732]" pageId="4" pageNumber="4695">
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<subScript id="392634DDFF8AFFE47024F919FCDBF925" attach="left" box="[845,870,1718,1732]" fontSize="6" pageId="4" pageNumber="4695">14:0</subScript>
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</paragraph>
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<paragraph id="A51D3698FF8AFFE57055F8E0FD84FEED" blockId="4.[822,1473,872,1957]" lastBlockId="5.[121,762,182,268]" lastPageId="5" lastPageNumber="4696" pageId="4" pageNumber="4695">
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||
<materialsCitation id="15CA3CC5FF8AFFE57055F8E0FD84FEED" ID-GBIF-Occurrence="3470319302" collectionCode="MEBiC" country="South Korea" lastPageId="5" lastPageNumber="4696" location="Buksung- Po" municipality="Incheon" pageId="4" pageNumber="4695" specimenCode="MEBiC09520T" specimenCount="1" typeStatus="holotype">
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The
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<typeStatus id="7A19883AFF8AFFE47006F8E0FC23F886" box="[879,926,1871,1895]" pageId="4" pageNumber="4695">type</typeStatus>
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strain,
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<specimenCode id="F5049EE3FF8AFFE47091F8E0FB29F8BA" box="[1016,1172,1869,1895]" collectionCode="MEBiC" pageId="4" pageNumber="4695">
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MEBiC09520
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<superScript id="52D79BD0FF8AFFE477E3F8E2FB29F8BA" attach="left" box="[1162,1172,1869,1883]" fontSize="6" pageId="4" pageNumber="4695">T</superScript>
|
||
</specimenCode>
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(=KCCM 43320
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||
<superScript id="52D79BD0FF8AFFE4763BF8E2FAE1F8BA" attach="none" box="[1362,1372,1869,1883]" fontSize="6" pageId="4" pageNumber="4695">T</superScript>
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||
=MCCC 1
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<accessionNumber id="BAF1AB7BFF8AFFE4702DF8C2FC26F864" box="[836,923,1901,1925]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/K03920" pageId="4" pageNumber="4695" type="EnaNcbi">K03920</accessionNumber>
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<superScript id="52D79BD0FF8AFFE470F3F8C3FC19F89B" attach="none" box="[922,932,1900,1914]" fontSize="6" pageId="4" pageNumber="4695">T</superScript>
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), was isolated from a tidal sediment of
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<location id="A07D6043FF8AFFE4763AF8C2FCE4F845" LSID="urn:lsid:plazi:treatment:2D0B878EFF8AFFE57055FCC7FD84FEED:A07D6043FF8AFFE4763AF8C2FCE4F845" country="South Korea" municipality="Incheon" name="Buksung- Po" pageId="4" pageNumber="4695">Buksung- Po</location>
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,
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<collectingMunicipality id="4579ACE2FF8AFFE4700BF823FC01F845" box="[866,956,1932,1956]" pageId="4" pageNumber="4695">Incheon</collectingMunicipality>
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,
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<collectingCountry id="DDB57608FF8AFFE470ACF823FBF7F845" box="[965,1098,1932,1956]" name="South Korea" pageId="4" pageNumber="4695">South Korea</collectingCountry>
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. The DNA G+C content of the type strain is 54.7 mol%. The GenBank/EMBL/MMBJ accession number for the 16S rRNA gene sequence is
|
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<accessionNumber id="BAF1AB7BFF8BFFE5713DFF7AFD77FF0C" box="[596,714,213,237]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/MK878394" pageId="5" pageNumber="4696">MK878394</accessionNumber>
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||
and that of the genome sequence is
|
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<accessionNumber id="BAF1AB7BFF8BFFE572ACFF5BFD88FEED" box="[453,565,244,268]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/CP040517" pageId="5" pageNumber="4696">CP040517</accessionNumber>
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.
|
||
</materialsCitation>
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |