143 lines
9.5 KiB
XML
143 lines
9.5 KiB
XML
<document ID-DOI="http://dx.doi.org/10.3897/mycokeys.33.23670" ID-GBIF-Dataset="42cbc858-8729-4618-9467-590ea7ca068e" ID-PMC="PMC6283267" ID-Pensoft-Pub="1314-4049-33-25" ID-PubMed="30532625" ModsDocAuthor="" ModsDocDate="2018" ModsDocID="1314-4049-33-25" ModsDocOrigin="MycoKeys 33" ModsDocTitle="Identification of endophytic fungi from leaves of Pandanaceae based on their morphotypes and DNA sequence data from southern Thailand" checkinTime="1522305991188" checkinUser="pensoft" docAuthor="Tibpromma, Saowaluck, Hyde, Kevin D., Bhat, Jayarama D., Mortimer, Peter E., Xu, Jianchu, Promputtha, Itthayakorn, Doilom, Mingkwan, Yang, Jun-Bo, Tang, Alvin M. C. & Karunarathna, Samantha C." docDate="2018" docId="F3817CAF8E3CEB4C5C6BFAD14EBA432D" docLanguage="en" docName="MycoKeys 33: 25-67" docOrigin="MycoKeys 33" docSource="http://dx.doi.org/10.3897/mycokeys.33.23670" docTitle="Colletotrichum fructicola Prihast., L. Cai & K. D. Hyde 2009" docType="treatment" docVersion="6" lastPageNumber="43" masterDocId="B85B6F41CC50A742FFD77F5B3B598C43" masterDocTitle="Identification of endophytic fungi from leaves of Pandanaceae based on their morphotypes and DNA sequence data from southern Thailand" masterLastPageNumber="67" masterPageNumber="25" pageNumber="43" updateTime="1668135980046" updateUser="ExternalLinkService">
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<mods:mods xmlns:mods="http://www.loc.gov/mods/v3">
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<mods:titleInfo>
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<mods:title>Identification of endophytic fungi from leaves of Pandanaceae based on their morphotypes and DNA sequence data from southern Thailand</mods:title>
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</mods:titleInfo>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Tibpromma, Saowaluck</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Hyde, Kevin D.</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Bhat, Jayarama D.</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Mortimer, Peter E.</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Xu, Jianchu</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Promputtha, Itthayakorn</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Doilom, Mingkwan</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Yang, Jun-Bo</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Tang, Alvin M. C.</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Karunarathna, Samantha C.</mods:namePart>
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</mods:name>
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<mods:typeOfResource>text</mods:typeOfResource>
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<mods:relatedItem type="host">
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<mods:titleInfo>
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<mods:title>MycoKeys</mods:title>
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</mods:titleInfo>
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<mods:part>
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<mods:date>2018</mods:date>
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<mods:detail type="volume">
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<mods:number>33</mods:number>
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</mods:detail>
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<mods:extent unit="page">
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<mods:start>25</mods:start>
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<mods:end>67</mods:end>
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</mods:extent>
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</mods:part>
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</mods:relatedItem>
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<mods:location>
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<mods:url>http://dx.doi.org/10.3897/mycokeys.33.23670</mods:url>
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</mods:location>
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<mods:classification>journal article</mods:classification>
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<mods:identifier type="DOI">http://dx.doi.org/10.3897/mycokeys.33.23670</mods:identifier>
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<mods:identifier type="Pensoft-Pub">1314-4049-33-25</mods:identifier>
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</mods:mods>
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<treatment ID-GBIF-Taxon="142664183" LSID="urn:lsid:plazi:treatment:F3817CAF8E3CEB4C5C6BFAD14EBA432D" httpUri="http://treatment.plazi.org/id/F3817CAF8E3CEB4C5C6BFAD14EBA432D" lastPageNumber="43" pageId="18" pageNumber="43">
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<subSubSection pageId="18" pageNumber="43" type="nomenclature">
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<paragraph pageId="18" pageNumber="43">
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<taxonomicName authority="Prihast., L. Cai & K. D. Hyde, 2009" authorityName="Prihast., L. Cai & K. D. Hyde" authorityYear="2009" class="Sordariomycetes" family="Glomerellaceae" genus="Colletotrichum" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Colletotrichum fructicola" order="Sordariomycetes" pageId="18" pageNumber="43" phylum="Ascomycota" rank="species" species="fructicola">Colletotrichum fructicola Prihast., L. Cai & K.D. Hyde, 2009</taxonomicName>
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</paragraph>
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</subSubSection>
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<subSubSection pageId="18" pageNumber="43" type="description">
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<paragraph pageId="18" pageNumber="43">Culture characteristics.</paragraph>
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<paragraph pageId="18" pageNumber="43">
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<taxonomicName genus="Colonies" lsidName="Colonies" pageId="18" pageNumber="43" rank="genus">Colonies</taxonomicName>
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on PDA (Figure 2, PE84, 88), superficial, white to olivaceous in the beginning and later become olivaceous to dark-olivaceous, circular, entire edge, smooth, dense and raised on surface media; reverse dark-olivaceous. Sporulating in culture after 1 month.
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</paragraph>
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</subSubSection>
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<subSubSection pageId="18" pageNumber="43" type="genbank numbers">
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<paragraph pageId="18" pageNumber="43">GenBank numbers.</paragraph>
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<paragraph pageId="18" pageNumber="43">
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MFLUCC 17-0613 ITS=MG646968,
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<normalizedToken originalValue="β-tubulin">β-tubulin</normalizedToken>
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=MG646927, GAPDH=MG646932, CHS-1=MG646937, ACT=MG646939. MFLUCC 17-0555 ITS=MG646969,
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<normalizedToken originalValue="β-tubulin">β-tubulin</normalizedToken>
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=MG646928, GADPH=MG646933, CHS-1=MG646936, ACT=MG646944.
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</paragraph>
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</subSubSection>
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<subSubSection pageId="18" pageNumber="43" type="notes">
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<paragraph pageId="18" pageNumber="43">Notes.</paragraph>
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<paragraph pageId="18" pageNumber="43">
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The
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<taxonomicName genus="Mycelium" higherTaxonomySource="GBIF" kingdom="Fungi" lsidName="Mycelium gloeosporioides" pageId="18" pageNumber="43" phylum="Basidiomycota" rank="species" species="gloeosporioides">gloeosporioides</taxonomicName>
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species complex is mainly plant pathogens (
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<bibRefCitation author="Weir, BS" journalOrPublisher="Mycologia Memoirs" pageId="37" pageNumber="62" url="https://doi.org/10.3114/sim0011" year="2012">Weir et al. 2012</bibRefCitation>
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) and some species are endophytes (
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<bibRefCitation author="Liu, F" journalOrPublisher="Persoonia" pageId="32" pageNumber="57" pagination="63 - 86" title="Unravelling Colletotrichum species associated with Camellia: employing ApMat and GS loci to resolve species in the C. gloeosporioides complex." url="https://doi.org/10.1016/j.funbio.2017.06.003" volume="35" year="2015">Liu et al. 2015</bibRefCitation>
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).
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<taxonomicName class="Sordariomycetes" family="Glomerellaceae" genus="Colletotrichum" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Colletotrichum fructicola" order="Glomerellales" pageId="18" pageNumber="43" phylum="Ascomycota" rank="species" species="fructicola">Colletotrichum fructicola</taxonomicName>
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has a wide host range (
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<bibRefCitation author="Weir, BS" journalOrPublisher="Mycologia Memoirs" pageId="37" pageNumber="62" url="https://doi.org/10.3114/sim0011" year="2012">Weir et al. 2012</bibRefCitation>
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) and was originally reported from coffee berries in Thailand (
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<bibRefCitation author="Prihastuti, H" journalOrPublisher="Fungal Diversity" pageId="34" pageNumber="59" pagination="89 - 109" title="Characterization of Colletotrichum species associated with coffee berries in northern Thailand." volume="39" year="2009">Prihastuti et al. 2009</bibRefCitation>
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). In this study, the authors followed
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<bibRefCitation author="Jayawardena, RS" journalOrPublisher="Mycosphere" pageId="30" pageNumber="55" pagination="1192 - 1260" title="Notes on currently accepted species of Colletotrichum." url="https://doi.org/10.5943/mycosphere/si/2c/9" volume="7" year="2016">Jayawardena et al. (2016)</bibRefCitation>
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and identify the collection as
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<taxonomicName class="Sordariomycetes" family="Glomerellaceae" genus="Colletotrichum" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Colletotrichum fructicola" order="Glomerellales" pageId="18" pageNumber="43" phylum="Ascomycota" rank="species" species="fructicola">Colletotrichum fructicola</taxonomicName>
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which was isolated from a
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<taxonomicName family="Pandanaceae" lsidName="Mycelium" pageId="18" pageNumber="43" rank="family">Pandanaceae</taxonomicName>
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host. Based on phylogenetic analysis, this taxon grouped with
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<taxonomicName class="Sordariomycetes" family="Glomerellaceae" genus="Colletotrichum" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Colletotrichum fructicola" order="Glomerellales" pageId="18" pageNumber="43" phylum="Ascomycota" rank="species" species="fructicola">Colletotrichum fructicola</taxonomicName>
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with 90 % in ML and 1.00 in PP. The ITS,
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<normalizedToken originalValue="β-tubulin">β-tubulin</normalizedToken>
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, GAPDH, CHS-1 and ACT DNA nucleotide comparison showed that the taxon and other strains of
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<taxonomicName class="Sordariomycetes" family="Glomerellaceae" genus="Colletotrichum" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Colletotrichum fructicola" order="Glomerellales" pageId="18" pageNumber="43" phylum="Ascomycota" rank="species" species="fructicola">Colletotrichum fructicola</taxonomicName>
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Prihast., L. Cai & K.D. Hyde have 100% similarity.
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</paragraph>
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</subSubSection>
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</treatment>
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</document> |