196 lines
22 KiB
XML
196 lines
22 KiB
XML
<document ID-CLB-Dataset="21001" ID-DOI="http://dx.doi.org/10.3897/phytokeys.159.51500" ID-GBIF-Dataset="e06cb6e9-528b-499b-b7a6-04f79aeceba7" ID-PMC="PMC7486315" ID-Pensoft-Pub="1314-2003-159-1" ID-Pensoft-UUID="30136DBCF1EF530A990029ACA2A8988A" ID-PubMed="32973386" ModsDocID="1314-2003-159-1" checkinTime="1599298975073" checkinUser="pensoft" docAuthor="Eggens, Frida, Jafari, Farzaneh, Thollesson, Mikael, Crameri, Simon, Zarre, Shahin & Oxelman, Bengt" docDate="2020" docId="5B4995173CAE56FE845400959F67BC37" docLanguage="en" docName="PhytoKeys 159: 1-34" docOrigin="PhytoKeys 159" docSource="http://dx.doi.org/10.3897/phytokeys.159.51500" docTitle="S. georgievskyi Lazkov, Bot. Zhurn. (Moscow & Leningrad). 84 (9): 123. 1999" docType="treatment" docVersion="6" id="30136DBCF1EF530A990029ACA2A8988A" lastPageNumber="1" masterDocId="30136DBCF1EF530A990029ACA2A8988A" masterDocTitle="Phylogeny and species delimitation in Silene sect. Arenosae (Caryophyllaceae): a new section" masterLastPageNumber="34" masterPageNumber="1" pageNumber="1" updateTime="1732738891970" updateUser="ExternalLinkService">
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<mods:title id="ED686694B19E031A926B6131B0298281">Phylogeny and species delimitation in Silene sect. Arenosae (Caryophyllaceae): a new section</mods:title>
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<mods:namePart id="B13F7BB86A623874FCD5485A80C8E7EE">Eggens, Frida</mods:namePart>
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<mods:affiliation id="D437AA597F4AB2B561044FA3B5545BEF">Department of Systematic Botany, Evolutionary Biology Centre, Uppsala University, Norbyvaegen 18 D, SE- 752 36 Uppsala, Sweden</mods:affiliation>
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<mods:namePart id="44159870F12DCC9EB5D2FCC663B134FF">Jafari, Farzaneh</mods:namePart>
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<mods:affiliation id="BD31825F3F277155BE18997F65027EBA">Centre of Excellence in Phylogeny of Living Organisms, and Department of Plant Science, School of Biology, College of Science, University of Tehran, 14155 - 6455, Tehran, Iran & Department of Biological and Environmental Sciences, University of Gothenburg, 40530 Gothenburg, Sweden</mods:affiliation>
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<mods:nameIdentifier id="A3273536BC5A0554B2EA0D3DDFB9D1C7" type="orcid">https://orcid.org/0000-0003-1890-7789</mods:nameIdentifier>
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<mods:nameIdentifier id="7EB34E4C5DA33BDEE0A1F44E259CE805" type="email">jafari_far1435@ut.ac.ir</mods:nameIdentifier>
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<mods:namePart id="6120078790E2FB45E83A07E7D6F7810E">Thollesson, Mikael</mods:namePart>
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<mods:affiliation id="0C84590D563FD81C87411DB05474363D">Department of Molecular Evolution, Evolutionary Biology Centre, Uppsala University, Norbyvaegen 18 C, SE- 752 36 Uppsala, Sweden</mods:affiliation>
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<mods:namePart id="80A4E0E7DE26F61BCD08A968AD540356">Crameri, Simon</mods:namePart>
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<mods:affiliation id="B43903E17B589F36DDFBE80FBDBE0583">Institute of Integrative Biology, ETH Zurich, Zurich, Switzerland</mods:affiliation>
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<mods:namePart id="C9D2221EA514F6437088680A39AE9409">Zarre, Shahin</mods:namePart>
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<mods:affiliation id="0F2A27DC16BF41DC7ADFFDAF4FA73F46">Centre of Excellence in Phylogeny of Living Organisms, and Department of Plant Science, School of Biology, College of Science, University of Tehran, 14155 - 6455, Tehran, Iran</mods:affiliation>
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<mods:namePart id="0BCD0B1422547F6A0C1C9C426822347C">Oxelman, Bengt</mods:namePart>
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<mods:affiliation id="A9D109CEAB0698736C5885AA5ECCD6CB">Department of Biological and Environmental Sciences, University of Gothenburg, 40530 Gothenburg, Sweden & Gothenburg Global Biodiversity Centre, University of Gothenburg, P. O. Box 461, 40530 Goeteborg, Sweden</mods:affiliation>
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<mods:nameIdentifier id="2E78BA9A7AE540856ED58E112B84AD42" type="email">bengt.oxelman@bioenv.gu.se</mods:nameIdentifier>
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<mods:title id="6B1E04A509C7A88448CB7409BBE9BFAA">PhytoKeys</mods:title>
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<mods:part id="77775B355745879EDE326FB8428C467A">
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<mods:date id="B84BC958D26F54EC9E65D81CDF128F08">2020</mods:date>
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<mods:number id="637283B3417BAD548AB6C30D1891EFAC">159</mods:number>
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<mods:start id="5BF308D5359370E76ECEC62D46285C08">1</mods:start>
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<mods:end id="D271CBF8FE51CEA7C5CCF861237394A8">34</mods:end>
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<mods:url id="17E3FDF345F3AC98A13FB92E847CEAEE">http://dx.doi.org/10.3897/phytokeys.159.51500</mods:url>
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<mods:classification id="7EFF5D9B28B40A7239AF44553CDF2FEE">journal article</mods:classification>
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<mods:identifier id="F1F470403B33F9D8120B322F3C3FD7D8" type="DOI">http://dx.doi.org/10.3897/phytokeys.159.51500</mods:identifier>
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<mods:identifier id="709542E74D9415388D32DE6B1AC4700D" type="Pensoft-Pub">1314-2003-159-1</mods:identifier>
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<mods:identifier id="330FAB703C34C74B7A1EB18B4E932FB0" type="Pensoft-UUID">30136DBCF1EF530A990029ACA2A8988A</mods:identifier>
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<treatment id="5B4995173CAE56FE845400959F67BC37" ID-GBIF-Taxon="167514830" LSID="urn:lsid:plazi:treatment:5B4995173CAE56FE845400959F67BC37" httpUri="http://treatment.plazi.org/id/5B4995173CAE56FE845400959F67BC37" lastPageNumber="1" pageId="0" pageNumber="1" scope_family="Caryophyllaceae" scope_genus="Silene">
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<subSubSection id="98A0CD716A1AAD7EDC71FF6061F6F01F" pageId="0" pageNumber="1" type="nomenclature">
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<paragraph id="00A295A1F78E189382B7181249E24534" pageId="0" pageNumber="1">
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5.
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<taxonomicName id="CDCD3E4A56F0507760A8C2C74CE10855" ID-CoL="4XBPG" LSID="5B499517-3CAE-56FE-8454-00959F67BC37" authority="Lazkov, Bot. Zhurn. (Moscow & Leningrad). 84 (9): 123. 1999." class="Magnoliopsida" family="Caryophyllaceae" higherTaxonomySource="CoL" kingdom="Plantae" lsidName="S. georgievskyi" order="Caryophyllales" pageId="0" pageNumber="1" phylum="Tracheophyta" rank="species" species="georgievskyi">S. georgievskyi Lazkov, Bot. Zhurn. (Moscow & Leningrad). 84 (9): 123. 1999.</taxonomicName>
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</paragraph>
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</subSubSection>
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<subSubSection id="E171FCBD43909F4163AF2881D2C1F2AF" pageId="0" pageNumber="1" type="materials_examined">
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<paragraph id="B1884EE13D58C1FB28FA30397FEB9D20" pageId="0" pageNumber="1">Type.</paragraph>
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<paragraph id="E4909BF2913754101273E14F9F5C3F64" pageId="0" pageNumber="1">
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[Syria], Desertum Syriacum. 30 km ad austro-orient. Ab urb. Deir-Ez-Zor, vallis undulata, ass. Ephem.-car. Frequens, 15 May 1985,
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<emphasis id="A3F088C3128FD04A1BD9E09467DB799F" italics="true" pageId="0" pageNumber="1">A. Georgievsky s.n.</emphasis>
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(Holotype: LE! [LE01051363]).
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</paragraph>
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</subSubSection>
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<subSubSection id="271E3B553FA752FB06AEBC0EA3282DDD" pageId="0" pageNumber="1" type="description">
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<paragraph id="CC62D5CD8BE4AA7772C4D24D0776B5F0" pageId="0" pageNumber="1">Description.</paragraph>
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<paragraph id="D8EA9070F1D69C975CEF76EE9FDEF0CF" pageId="0" pageNumber="1">
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20.0-50.0 cm tall, erect. Stem pubescent in lower part, scabrous, pubescent with sessile glands in upper part; with 8-12 distinct internodes, the uppermost internode obviously longer than the next upper internode. Basal leaves linear or oblanceolate, pubescent. Cauline leaves linear 10.0-40.0
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<normalizedToken id="C5BB7D41CC52EEB90A9A608A0AE7BF92" originalValue="×">x</normalizedToken>
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1.0-3.0 mm, pubescent. Calyx 25.0-30.0 mm long, ovoid at anthesis and clavate in fruit, pubescent; teeth unequal; shorter ones 2.0-4.0 mm, ovate, acuminate; longer ones 4.0-6.0 mm, lanceolate, acuminate; marginal hairs long (longer than 0.5 mm), dense. Inflorescence non-divaricate, branch axile (much) less than 90°. Petal claws 10.0-12.0 mm long, glabrous; limbs 7.0-9.0 mm long, bifid, upper-surface pink, lobes oblong, petal limbs cleft to middle or more; coronal scales 2.0-2.2 mm long. Anthophore 13.0-16.0 mm long, glabrous or puberulent. Anthers exserted; filaments 12.0-15.0 mm long, glabrous. Styles exserted. First pedicel 1.0-4.0 cm in flower, 2.0-6.0 cm in fruit, erect, glabrous, apex antrorse. Capsule 12.0 mm long, oblong or ellipsoid. Seeds 0.8-1.0 mm wide.
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</paragraph>
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</subSubSection>
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<subSubSection id="E8E044BE04F33889C37CDF15D7C3F84C" pageId="0" pageNumber="1" type="distribution">
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<paragraph id="D82B972D1518F953B4772FEB7B76D140" pageId="0" pageNumber="1">Distribution.</paragraph>
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<paragraph id="7517701A5848D2E3D5D780614690D18A" pageId="0" pageNumber="1">
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Syria, N Iraq (Fig.
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<figureCitation id="9E131FE7793700818C20BECB66C6C875" captionStart="Figure 7" captionStartId="F7" captionText="Figure 7. Distribution map of S. sect. Arenosae. Each color code corresponds to one taxon: A S. arenosa B S. austroiranica C S. chaetodonta D S. exsudans E S. georgievskyi F S. leyseroides G S. linearis H S. microsperma subsp. cypria I S. microsperma subsp. maritima J S. microsperma subsp. microsperma K S. microsperma subsp. modesta L S. striata." figureDoi="10.3897/phytokeys.159.51500.figure7" httpUri="https://binary.pensoft.net/fig/447291" pageId="0" pageNumber="1">7</figureCitation>
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).
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</paragraph>
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</subSubSection>
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<subSubSection id="842F5D615B8990FB400B321BB0432F60" pageId="0" pageNumber="1" type="notes">
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<paragraph id="AC1F48F260F139F5E849BDC31EBAC9C6" pageId="0" pageNumber="1">Notes.</paragraph>
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<paragraph id="EFDCC228FC81F11FE878268BA4C524FB" pageId="0" pageNumber="1">
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At the molecular level, we have two sequences for each ITS and
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<emphasis id="332DA898EBDA273E8AC655E1393B593C" italics="true" pageId="0" pageNumber="1">rps16</emphasis>
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and only one for
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<emphasis id="B5B9143300184658D5FD0071889946E9" italics="true" pageId="0" pageNumber="1">RPB2</emphasis>
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. All the three markers were sequenced for the specimen from Syria (
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<taxonomicName id="9BE6097DA4289958F7CC8852E316175A" lsidName="S. georgievskyi" pageId="0" pageNumber="1" rank="species" species="georgievskyi">
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<emphasis id="ED5A2C85FA9F416645D32415AEB04C07" italics="true" pageId="0" pageNumber="1">S. georgievskyi</emphasis>
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</taxonomicName>
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ID. 42), but for the specimen from Iraq, the ITS and
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<emphasis id="182AA7A8E65100C0D7600D7E224215A1" italics="true" pageId="0" pageNumber="1">rps16</emphasis>
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regions were sequenced from two duplicate specimens from different herbaria. The two accessions of
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<taxonomicName id="4E9B1A6C56007DA47D2971AFB8643E42" lsidName="S. georgievskyi" pageId="0" pageNumber="1" rank="species" species="georgievskyi">
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<emphasis id="A2C76EB36919FB0A1A4F873320BC9464" italics="true" pageId="0" pageNumber="1">S. georgievskyi</emphasis>
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</taxonomicName>
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from Iraq and Syria do not form a monophyletic group in the species, ITS and
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<emphasis id="B8BA945F6914A2F16341763068EBB410" italics="true" pageId="0" pageNumber="1">rps16</emphasis>
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trees (Figs
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<figureCitation id="1FC7484E8D3FAA8BEF2ED2C48C74DD53" captionStart="Figure 1" captionStartId="F1" captionText="Figure 1. Species tree from two STACEY runs and three unlinked regions (ITS, RPB 2, rps 16). Posterior probabilities> 0.75 are shown above branches. The number following the taxonomic name is the specimen ID (Suppl. material 1). Scale bar reflects the number of substitutions per site." figureDoi="10.3897/phytokeys.159.51500.figure1" httpUri="https://binary.pensoft.net/fig/447285" pageId="0" pageNumber="1">1</figureCitation>
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,
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<figureCitation id="5E9021C81760D3A3EB31FEC15257B736" captionStart="Figure 3" captionStartId="F3" captionText="Figure 3. Phylogenetic tree resulting from Bayesian analysis of the ITS sequences including 76 taxa. The trees were summarized in a 50 % majority-rule consensus tree with the posterior probabilities (PP) indicated above branches. Bootstrap support values (> 75 %) based on MP and ML are noted below branches, respectively. The numbers following the taxonomic name indicate the specimen ID and Genbank numbers (Suppl. material 1), respectively." figureDoi="10.3897/phytokeys.159.51500.figure3" httpUri="https://binary.pensoft.net/fig/447287" pageId="0" pageNumber="1">3</figureCitation>
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,
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<figureCitation id="E6BEDFF4C18A03D4BD07975DDFE31D90" captionStart="Figure 4" captionStartId="F4" captionText="Figure 4. Phylogenetic tree resulting from Bayesian analysis of the rps 16 sequences including 71 taxa. The trees were summarized in a 50 % majority-rule consensus tree with the posterior probabilities (PP) indicated above branches. Bootstrap support values (> 75 %) based on MP and ML are noted below branches, respectively. The numbers following the taxonomic name indicate the specimen ID and Genbank numbers (Suppl. material 1), respectively." figureDoi="10.3897/phytokeys.159.51500.figure4" httpUri="https://binary.pensoft.net/fig/447288" pageId="0" pageNumber="1">4</figureCitation>
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). The accession from Iraq (
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<taxonomicName id="78B9DA3A97FC4836CDA25E636BC6C1DC" lsidName="S. georgievskyi" pageId="0" pageNumber="1" rank="species" species="georgievskyi">
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<emphasis id="6DF3E2FA545EC20DB71CFA5749933732" italics="true" pageId="0" pageNumber="1">S. georgievskyi</emphasis>
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</taxonomicName>
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ID. 41) is found together with the accessions of
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<taxonomicName id="0B955AA92BBCC6CF8D39BBA84B9C87E5" lsidName="S. chaetodonta" pageId="0" pageNumber="1" rank="species" species="chaetodonta">
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<emphasis id="90F911CFF5647992C103F84EF31F590C" italics="true" pageId="0" pageNumber="1">S. chaetodonta</emphasis>
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</taxonomicName>
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in a moderately to strongly supported clades in the species (PP = 0.78, Fig.
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<figureCitation id="21EE6CE2315DABEA89370EDA613D75EE" captionStart="Figure 1" captionStartId="F1" captionText="Figure 1. Species tree from two STACEY runs and three unlinked regions (ITS, RPB 2, rps 16). Posterior probabilities> 0.75 are shown above branches. The number following the taxonomic name is the specimen ID (Suppl. material 1). Scale bar reflects the number of substitutions per site." figureDoi="10.3897/phytokeys.159.51500.figure1" httpUri="https://binary.pensoft.net/fig/447285" pageId="0" pageNumber="1">1</figureCitation>
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) and
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<emphasis id="E698DAD062E1B3B9058A4B7FF710726E" italics="true" pageId="0" pageNumber="1">rps16</emphasis>
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(PP = 1.00 MPB = 94% MLB = 96%, Fig.
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<figureCitation id="2D675DD66DAD3E79859F87A2455CC202" captionStart="Figure 4" captionStartId="F4" captionText="Figure 4. Phylogenetic tree resulting from Bayesian analysis of the rps 16 sequences including 71 taxa. The trees were summarized in a 50 % majority-rule consensus tree with the posterior probabilities (PP) indicated above branches. Bootstrap support values (> 75 %) based on MP and ML are noted below branches, respectively. The numbers following the taxonomic name indicate the specimen ID and Genbank numbers (Suppl. material 1), respectively." figureDoi="10.3897/phytokeys.159.51500.figure4" httpUri="https://binary.pensoft.net/fig/447288" pageId="0" pageNumber="1">4</figureCitation>
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) trees, respectively. The accession from Syria is nested within a clade including
|
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<taxonomicName id="56E957DA01EBD2AC2C851E6D0C9C06CF" lsidName="S. microsperma" pageId="0" pageNumber="1" rank="species" species="microsperma">
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<emphasis id="3FA3DEBD6C6472B9A2356F203D673C47" italics="true" pageId="0" pageNumber="1">S. microsperma</emphasis>
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</taxonomicName>
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in the species tree (Fig.
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<figureCitation id="88957C844E76129E4FBC330D9A4B8F72" captionStart="Figure 1" captionStartId="F1" captionText="Figure 1. Species tree from two STACEY runs and three unlinked regions (ITS, RPB 2, rps 16). Posterior probabilities> 0.75 are shown above branches. The number following the taxonomic name is the specimen ID (Suppl. material 1). Scale bar reflects the number of substitutions per site." figureDoi="10.3897/phytokeys.159.51500.figure1" httpUri="https://binary.pensoft.net/fig/447285" pageId="0" pageNumber="1">1</figureCitation>
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) and weakly supported in
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<emphasis id="31468DEDE7BE599334BC5DADA5AF71E4" italics="true" pageId="0" pageNumber="1">rps16</emphasis>
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tree (Fig.
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<figureCitation id="170E62C27D67E883E4476D3FA37AF605" captionStart="Figure 4" captionStartId="F4" captionText="Figure 4. Phylogenetic tree resulting from Bayesian analysis of the rps 16 sequences including 71 taxa. The trees were summarized in a 50 % majority-rule consensus tree with the posterior probabilities (PP) indicated above branches. Bootstrap support values (> 75 %) based on MP and ML are noted below branches, respectively. The numbers following the taxonomic name indicate the specimen ID and Genbank numbers (Suppl. material 1), respectively." figureDoi="10.3897/phytokeys.159.51500.figure4" httpUri="https://binary.pensoft.net/fig/447288" pageId="0" pageNumber="1">4</figureCitation>
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, PP<0.75). In the ITS tree, the accessions of
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<taxonomicName id="7ADE08510F19455FED4345FAF112416B" lsidName="S. georgievskyi" pageId="0" pageNumber="1" rank="species" species="georgievskyi">
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<emphasis id="443E8A3EE6D84F6A8FF43C401D8C01C5" italics="true" pageId="0" pageNumber="1">S. georgievskyi</emphasis>
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</taxonomicName>
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do not form a monophyletic group, but they are included in a strongly supported clade together with
|
||
<taxonomicName id="78AF3EC5E64B6EE2F11E51E0C46960A6" lsidName="S. chaetodonta" pageId="0" pageNumber="1" rank="species" species="chaetodonta">
|
||
<emphasis id="6E360E4D7351F00D1E39A92B8756BF9D" italics="true" pageId="0" pageNumber="1">S. chaetodonta</emphasis>
|
||
</taxonomicName>
|
||
and
|
||
<taxonomicName id="0AC61B5CE341B6289502B7700BC0A1C6" lsidName="S. striata" pageId="0" pageNumber="1" rank="species" species="striata">
|
||
<emphasis id="680B0EE471403E3D0D7E8A21803AA19A" italics="true" pageId="0" pageNumber="1">S. striata</emphasis>
|
||
</taxonomicName>
|
||
(PP = 0.98 MPB = 86% MLB = 93%, Fig.
|
||
<figureCitation id="22DA30AC9EAF20E1E5056FF16781D93D" captionStart="Figure 3" captionStartId="F3" captionText="Figure 3. Phylogenetic tree resulting from Bayesian analysis of the ITS sequences including 76 taxa. The trees were summarized in a 50 % majority-rule consensus tree with the posterior probabilities (PP) indicated above branches. Bootstrap support values (> 75 %) based on MP and ML are noted below branches, respectively. The numbers following the taxonomic name indicate the specimen ID and Genbank numbers (Suppl. material 1), respectively." figureDoi="10.3897/phytokeys.159.51500.figure3" httpUri="https://binary.pensoft.net/fig/447287" pageId="0" pageNumber="1">3</figureCitation>
|
||
). The morphological distinctiveness (much longer calyx, long anthophore and larger petals) speaks in favour of recognition of the species, and although chromosome numbers are unknown, we hypothesize that the incongruent pattern seen in the Syrian specimen may be explained by polyploid hybridization. Allopolyploids often grow larger than their parents (
|
||
<bibRefCitation id="697F6113D8C1B70D9E37B75E43CA32F4" DOI="https://doi.org/10.1016/j.tplants.2009.12.003" author="Chen, ZJ" journalOrPublisher="Trends in Plant Science" pageId="0" pageNumber="1" pagination="57 - 71" refId="B12" refString="Chen, ZJ, 2010. Molecular mechanisms of polyploidy and hybrid vigor. Trends in Plant Science 15 (2): 57 - 71, DOI: https://doi.org/10.1016/j.tplants.2009.12.003" title="Molecular mechanisms of polyploidy and hybrid vigor." url="https://doi.org/10.1016/j.tplants.2009.12.003" volume="15" year="2010">Chen 2010</bibRefCitation>
|
||
).
|
||
<taxonomicName id="39868556B1DEC4B9078F6EA161AB4843" authorityName="G. A. Lazkov" authorityYear="1999" class="Magnoliopsida" family="Caryophyllaceae" genus="Silene" higherTaxonomySource="CoL" kingdom="Plantae" lsidName="Silene georgievskyi" order="Caryophyllales" pageId="0" pageNumber="1" phylum="Tracheophyta" rank="species" species="georgievskyi">
|
||
<emphasis id="33C9ECF59FC547651EC907D38A2A95EA" italics="true" pageId="0" pageNumber="1">Silene georgievskyi</emphasis>
|
||
</taxonomicName>
|
||
is morphologically larger in floral and general habit aspects compared to both
|
||
<taxonomicName id="41A9157F36410508773A9E80ADD29771" lsidName="S. chaetodonta" pageId="0" pageNumber="1" rank="species" species="chaetodonta">
|
||
<emphasis id="5A0D0B04D76770C286D936283D4B910B" italics="true" pageId="0" pageNumber="1">S. chaetodonta</emphasis>
|
||
</taxonomicName>
|
||
and
|
||
<taxonomicName id="8E5FCF2E73A857FED161018C93BF5E92" lsidName="S. microsperma" pageId="0" pageNumber="1" rank="species" species="microsperma">
|
||
<emphasis id="E253073DDDFCBA91169ED297DC52B995" italics="true" pageId="0" pageNumber="1">S. microsperma</emphasis>
|
||
</taxonomicName>
|
||
. There may be a small overlap in the distributions of
|
||
<taxonomicName id="48949D969ED8333435CCD259E37F41C9" lsidName="S. chaetodonta" pageId="0" pageNumber="1" rank="species" species="chaetodonta">
|
||
<emphasis id="45CC034C234BC6F5D360F250FF43A756" italics="true" pageId="0" pageNumber="1">S. chaetodonta</emphasis>
|
||
</taxonomicName>
|
||
and
|
||
<taxonomicName id="F000694E2D453AC09916C229880FEDB6" lsidName="S. georgievskyi" pageId="0" pageNumber="1" rank="species" species="georgievskyi">
|
||
<emphasis id="D7780BBC3738B60B96F779088FFA582E" italics="true" pageId="0" pageNumber="1">S. georgievskyi</emphasis>
|
||
</taxonomicName>
|
||
, in the border area between Iraq and Syria.
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |