191 lines
18 KiB
XML
191 lines
18 KiB
XML
<document id="4619C6042D28C58125F2DC2D15455A95" ID-CLB-Dataset="45244" ID-DOI="10.5281/zenodo.211627" ID-GBIF-Dataset="58f33d6c-c5d0-4108-b181-2f5799177bff" ID-ISSN="1175-5326" ID-Zenodo-Dep="211627" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_requiresApprovalFor="existingObjects,plazi" IM.taxonomicNames_approvedBy="felipe" checkinTime="1460455547947" checkinUser="plazi" docAuthor="Vasudevan, Karthikeyan, Silva, Anslem De, Kar, Niladri Bhusan, Naniwadekar, Rohit, Lalremruata, Albert, Prasoona, Rebekah & Aggarwal, Ramesh K" docDate="2012" docId="6226D72D5005FF98FF4006B8FAFCFE9C" docLanguage="en" docName="zt03233p051.pdf" docOrigin="Zootaxa 3233" docStyle="DocumentStyle:890A69B780ED73D6DB8551B71C8AC79E.4:Zootaxa.2009-2012.journal_article" docStyleId="890A69B780ED73D6DB8551B71C8AC79E" docStyleName="Zootaxa.2009-2012.journal_article" docStyleVersion="4" docTitle="Dasia" docType="treatment" docVersion="10" lastPageNumber="47" masterDocId="9E1FAF55500CFF93FFD7000BFF85FFA3" masterDocTitle="Phylogeography of Dasia Gray, 1830 (Reptilia: Scincidae), with the description of a new species from southern India" masterLastPageNumber="51" masterPageNumber="37" pageNumber="46" updateTime="1698338579867" updateUser="ExternalLinkService">
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<mods:title id="F49AE714A4E3C08355D5E1B1299B5A52">Phylogeography of Dasia Gray, 1830 (Reptilia: Scincidae), with the description of a new species from southern India</mods:title>
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<mods:namePart id="EEE523C5384824E108D000F4A8E6E55D">Vasudevan, Karthikeyan</mods:namePart>
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<mods:namePart id="4DE35CE235AC525771D5E8F5FECCBF5D">Silva, Anslem De</mods:namePart>
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<mods:namePart id="79087AE9516E8B3B4175755654CDEA60">Kar, Niladri Bhusan</mods:namePart>
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<mods:namePart id="43EEA553931B15C0B8A969AEBC80964D">Naniwadekar, Rohit</mods:namePart>
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<mods:namePart id="F4B0D2E0745FA1A17ACF74F81321FEA4">Lalremruata, Albert</mods:namePart>
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<mods:namePart id="7F41EAEFBCEB26BAE4A6D608721A5141">Prasoona, Rebekah</mods:namePart>
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<mods:namePart id="75C7F7CA9B5FBCB4684420FFAC891E20">Aggarwal, Ramesh K</mods:namePart>
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<mods:title id="2DF8E9FD7B35EB9C6E13A5B659CFD019">Zootaxa</mods:title>
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<mods:date id="97E7549043B63BA0FC76691C8EB27D0D">2012</mods:date>
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<mods:identifier id="1F167343CFB184633BE3BE8C5DE6956A" type="DOI">10.5281/zenodo.211627</mods:identifier>
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<treatment id="6226D72D5005FF98FF4006B8FAFCFE9C" ID-DOI="http://doi.org/10.5281/zenodo.5611438" ID-GBIF-Taxon="119576126" ID-Zenodo-Dep="5611438" LSID="urn:lsid:plazi:treatment:6226D72D5005FF98FF4006B8FAFCFE9C" httpUri="http://treatment.plazi.org/id/6226D72D5005FF98FF4006B8FAFCFE9C" lastPageId="11" lastPageNumber="47" pageId="9" pageNumber="46">
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<subSubSection id="A29535B05005FF9AFF4006B8FEF9F968" box="[151,380,1714,1739]" pageId="9" pageNumber="46" type="nomenclature">
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<paragraph id="EA30663B5005FF9AFF4006B8FEF9F968" blockId="9.[151,380,1714,1739]" box="[151,380,1714,1739]" pageId="9" pageNumber="46">
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<heading id="B178D1575005FF9AFF4006B8FEF9F968" bold="true" box="[151,380,1714,1739]" fontSize="10" level="2" pageId="9" pageNumber="46" reason="2">
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<emphasis id="D8FBBA295005FF9AFF4006B8FEF9F968" bold="true" box="[151,380,1714,1739]" pageId="9" pageNumber="46">
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Phylogeny of
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<taxonomicName id="2D8F1DB85005FF9AFEEE06B9FEF9F968" box="[313,380,1714,1739]" class="Reptilia" family="Scincidae" genus="Dasia" kingdom="Animalia" order="Squamata" pageId="9" pageNumber="46" phylum="Chordata" rank="genus">
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<emphasis id="D8FBBA295005FF9AFEEE06B9FEF9F968" bold="true" box="[313,380,1714,1739]" italics="true" pageId="9" pageNumber="46">Dasia</emphasis>
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</taxonomicName>
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</emphasis>
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</paragraph>
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<subSubSection id="A29535B05005FF98FF4006F3FAFCFE9C" lastPageId="11" lastPageNumber="48" pageId="9" pageNumber="46" type="description">
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<paragraph id="EA30663B5005FF9AFF4006F3FE4FF81E" blockId="9.[151,1436,1784,1981]" pageId="9" pageNumber="46">
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The heuristic search of the MP analysis produced one most parsimonious tree with a tree length of 956 (CI = 0.46, HI = 0.53 and RI = 0.50). The GTR+G+I model was selected for the data Using MODELTEST (
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<bibRefCitation id="8E1E1BCA5005FF9AFB100710FF56F8F6" author="Posada" pageId="9" pageNumber="46" refString="Posada, D. & Crandall, K. A. (1998) Modeltest: testing the model of DNA substitution. Bioinformatics, 14, 817 - 818." type="journal article" year="1998">
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Posada
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<emphasis id="D8FBBA295005FF9AFAC80717FAB0F890" box="[1311,1333,1820,1843]" italics="true" pageId="9" pageNumber="46">&</emphasis>
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Crandall 1998
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</bibRefCitation>
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). The ML analysis for combined data revealed a single tree with a negative log-likelihood score (–ln
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<emphasis id="D8FBBA295005FF9AFA860734FAE5F8F5" box="[1361,1376,1855,1878]" italics="true" pageId="9" pageNumber="46">L</emphasis>
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) of - 5411.14. The branching pattern of the ML, MP and the Bayesian trees were identical (fig. 7). Bayesian analyses provided higher values for posterior probabilities as support for the node, when compared with bootstrap supports from ML and MP analyses.
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</paragraph>
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<caption id="BEF036B35006FF99FF4006CCFBD5F899" httpUri="https://zenodo.org/record/211632/files/figure.png" pageId="10" pageNumber="47" targetBox="[264,1320,189,1689]" targetPageId="10">
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<paragraph id="EA30663B5006FF99FF4006CCFBD5F899" blockId="10.[151,1436,1735,1850]" pageId="10" pageNumber="47">
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<emphasis id="D8FBBA295006FF99FF4006CCFE93F97E" bold="true" box="[151,278,1735,1758]" pageId="10" pageNumber="47">FIGURE 7.</emphasis>
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Phylogenetic trees based on the combined mitochondrial 12S and 16S rDNA sequence (954 bp) showing the genetic relationship of the
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<taxonomicName id="2D8F1DB85006FF99FE7D06E3FDDCF95E" box="[426,601,1767,1789]" class="Reptilia" family="Scincidae" genus="Dasia" kingdom="Animalia" order="Squamata" pageId="10" pageNumber="47" phylum="Chordata" rank="species" species="johnsinghi" status="sp. nov.">
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<emphasis id="D8FBBA295006FF99FE7D06E3FDDCF95E" box="[426,601,1767,1789]" italics="true" pageId="10" pageNumber="47">Dasia johnsinghi</emphasis>
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</taxonomicName>
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<emphasis id="D8FBBA295006FF99FDB606ECFD36F95F" bold="true" box="[609,691,1767,1788]" pageId="10" pageNumber="47">
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<taxonomicNameLabel id="C3C807525006FF99FDB606ECFD36F95F" box="[609,691,1767,1788]" pageId="10" pageNumber="47" rank="species">sp. nov.</taxonomicNameLabel>
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</emphasis>
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relative to other
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<taxonomicName id="2D8F1DB85006FF99FCB206E3FC27F95E" box="[869,930,1768,1789]" class="Reptilia" family="Scincidae" genus="Dasia" kingdom="Animalia" order="Squamata" pageId="10" pageNumber="47" phylum="Chordata" rank="genus">
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<emphasis id="D8FBBA295006FF99FCB206E3FC27F95E" box="[869,930,1768,1789]" italics="true" pageId="10" pageNumber="47">Dasia</emphasis>
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</taxonomicName>
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species: (a) Maximum Likelihood (b) Maximum Parsimony and (c) Bayesian tree. Values at the nodes are bootstrap support values or posterior probabilities obtained in ML/MP and Bayesian analysis, respectively. All trees are rooted using
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<emphasis id="D8FBBA295006FF99FCD9072EFC28F899" box="[782,941,1829,1850]" italics="true" pageId="10" pageNumber="47">
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Lipina
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<taxonomicName id="2D8F1DB85006FF99FC80072EFC28F899" box="[855,941,1829,1850]" class="Reptilia" family="Scincidae" genus="Lipinia" kingdom="Animalia" order="Squamata" pageId="10" pageNumber="47" phylum="Chordata" rank="species" species="vittigera">vittigera</taxonomicName>
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</emphasis>
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as an outgroup.
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</paragraph>
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</caption>
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<paragraph id="EA30663B5006FF98FF100781FAFCFE9C" blockId="10.[151,1436,1930,2027]" lastBlockId="11.[151,1436,151,319]" lastPageId="11" lastPageNumber="48" pageId="10" pageNumber="47">
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All the analyses supported monophyly of the genus
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<taxonomicName id="2D8F1DB85006FF99FCCB0787FCDAF800" box="[796,863,1932,1955]" class="Reptilia" family="Scincidae" genus="Dasia" kingdom="Animalia" order="Squamata" pageId="10" pageNumber="47" phylum="Chordata" rank="genus">
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<emphasis id="D8FBBA295006FF99FCCB0787FCDAF800" box="[796,863,1932,1955]" italics="true" pageId="10" pageNumber="47">Dasia</emphasis>
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</taxonomicName>
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. The South
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<collectingCountry id="929826AB5006FF99FC390781FBADF801" box="[1006,1064,1930,1954]" name="India" pageId="10" pageNumber="47">India</collectingCountry>
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and
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<collectingCountry id="929826AB5006FF99FBB50781FB54F801" box="[1122,1233,1930,1954]" name="Sri Lanka" pageId="10" pageNumber="47">Sri Lanka</collectingCountry>
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clade was monophyletic, but the Southeast Asian
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<taxonomicName id="2D8F1DB85006FF99FDDB07BBFDCAF864" box="[524,591,1968,1991]" class="Reptilia" family="Scincidae" genus="Dasia" kingdom="Animalia" order="Squamata" pageId="10" pageNumber="47" phylum="Chordata" rank="genus">
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<emphasis id="D8FBBA295006FF99FDDB07BBFDCAF864" box="[524,591,1968,1991]" italics="true" pageId="10" pageNumber="47">Dasia</emphasis>
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</taxonomicName>
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were polyphyletic. The new species identified through this study (
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<taxonomicName id="2D8F1DB85006FF99FAE307BBFF54F848" class="Reptilia" family="Scincidae" genus="Dasia" kingdom="Animalia" order="Squamata" pageId="10" pageNumber="47" phylum="Chordata" rank="species" species="johnsinghi" status="sp. nov.">
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<emphasis id="D8FBBA295006FF99FAE307BBFF54F848" italics="true" pageId="10" pageNumber="47">D. johnsinghi</emphasis>
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</taxonomicName>
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<emphasis id="D8FBBA295006FF99FF0007D8FEB4F848" bold="true" box="[215,305,2003,2027]" pageId="10" pageNumber="47">
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<taxonomicNameLabel id="C3C807525006FF99FF0007D8FEB4F848" box="[215,305,2003,2027]" pageId="10" pageNumber="47" rank="species">sp. nov.</taxonomicNameLabel>
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</emphasis>
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) was distinct from
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<taxonomicName id="2D8F1DB85006FF99FDDC07DFFD06F848" box="[523,643,2003,2027]" class="Reptilia" family="Scincidae" genus="Dasia" kingdom="Animalia" order="Squamata" pageId="10" pageNumber="47" phylum="Chordata" rank="species" species="haliana">
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<emphasis id="D8FBBA295006FF99FDDC07DFFD06F848" box="[523,643,2003,2027]" italics="true" pageId="10" pageNumber="47">D. haliana</emphasis>
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</taxonomicName>
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and
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<taxonomicName id="2D8F1DB85006FF99FD6E07DFFCFCF848" box="[697,889,2003,2027]" class="Reptilia" family="Scincidae" genus="Dasia" kingdom="Animalia" order="Squamata" pageId="10" pageNumber="47" phylum="Chordata" rank="species" species="subcaeruleum">
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<emphasis id="D8FBBA295006FF99FD6E07DFFCFCF848" box="[697,889,2003,2027]" italics="true" pageId="10" pageNumber="47">D. subcaeruleum</emphasis>
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</taxonomicName>
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. The support for the node distinguishing the two species were significant (≥ 95%) in all the analyses (ML, MP and Bayesian). The closest relative of
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<taxonomicName id="2D8F1DB85007FF98FAD40092FA19FF13" box="[1283,1436,152,176]" class="Reptilia" family="Scincidae" genus="Dasia" kingdom="Animalia" order="Squamata" pageId="11" pageNumber="48" phylum="Chordata" rank="species" species="johnsinghi">
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<emphasis id="D8FBBA295007FF98FAD40092FA19FF13" box="[1283,1436,152,176]" italics="true" pageId="11" pageNumber="48">D. johnsinghi</emphasis>
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</taxonomicName>
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was
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<taxonomicName id="2D8F1DB85007FF98FF1C00B6FEC0FF77" box="[203,325,188,212]" class="Reptilia" family="Scincidae" genus="Dasia" kingdom="Animalia" order="Squamata" pageId="11" pageNumber="48" phylum="Chordata" rank="species" species="haliana">
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<emphasis id="D8FBBA295007FF98FF1C00B6FEC0FF77" box="[203,325,188,212]" italics="true" pageId="11" pageNumber="48">D. haliana</emphasis>
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</taxonomicName>
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from
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<collectingCountry id="929826AB5007FF98FE5C00B7FE7BFF77" box="[395,510,188,212]" name="Sri Lanka" pageId="11" pageNumber="48">Sri Lanka</collectingCountry>
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. In the Bayesian analysis,
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<taxonomicName id="2D8F1DB85007FF98FCFA00B6FC12FF77" box="[813,919,189,212]" class="Reptilia" family="Scincidae" genus="Dasia" kingdom="Animalia" order="Squamata" pageId="11" pageNumber="48" phylum="Chordata" rank="species" species="grisea">
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<emphasis id="D8FBBA295007FF98FCFA00B6FC12FF77" box="[813,919,189,212]" italics="true" pageId="11" pageNumber="48">D. grisea</emphasis>
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</taxonomicName>
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was basal to all the other
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<taxonomicName id="2D8F1DB85007FF98FB1300B6FA82FF77" box="[1220,1287,189,212]" class="Reptilia" family="Scincidae" genus="Dasia" kingdom="Animalia" order="Squamata" pageId="11" pageNumber="48" phylum="Chordata" rank="genus">
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<emphasis id="D8FBBA295007FF98FB1300B6FA82FF77" box="[1220,1287,189,212]" italics="true" pageId="11" pageNumber="48">Dasia</emphasis>
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</taxonomicName>
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species. The African (
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<taxonomicName id="2D8F1DB85007FF98FF2900EBFE04FF5B" box="[254,385,224,248]" class="Reptilia" family="Scincidae" genus="Trachylepis" kingdom="Animalia" order="Squamata" pageId="11" pageNumber="48" phylum="Chordata" rank="genus">
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<emphasis id="D8FBBA295007FF98FF2900EBFE04FF5B" box="[254,385,224,248]" italics="true" pageId="11" pageNumber="48">Trachylepis</emphasis>
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</taxonomicName>
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) and the Asian (
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<emphasis id="D8FBBA295007FF98FD9400EAFD71FF5B" box="[579,756,225,248]" italics="true" pageId="11" pageNumber="48">
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<taxonomicName id="2D8F1DB85007FF98FD9400EAFD0CFF5B" box="[579,649,225,248]" class="Reptilia" family="Scincidae" genus="Dasia" kingdom="Animalia" order="Squamata" pageId="11" pageNumber="48" phylum="Chordata" rank="genus">Dasia</taxonomicName>
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,
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<taxonomicName id="2D8F1DB85007FF98FD4200EAFD71FF5B" box="[661,756,225,248]" class="Reptilia" family="Scincidae" genus="Eutropis" kingdom="Animalia" order="Squamata" pageId="11" pageNumber="48" phylum="Chordata" rank="genus">Eutropis</taxonomicName>
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</emphasis>
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) clades were different and were deeply divided. Within the genus
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<taxonomicName id="2D8F1DB85007FF98FF08010EFEA7FEBF" box="[223,290,261,284]" class="Reptilia" family="Scincidae" genus="Dasia" kingdom="Animalia" order="Squamata" pageId="11" pageNumber="48" phylum="Chordata" rank="genus">
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<emphasis id="D8FBBA295007FF98FF08010EFEA7FEBF" box="[223,290,261,284]" italics="true" pageId="11" pageNumber="48">Dasia</emphasis>
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</taxonomicName>
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, interspecific distance varied from 0.03–0.09. In the case of
|
||
<taxonomicName id="2D8F1DB85007FF98FC12010EFBC3FEBF" box="[965,1094,260,284]" class="Reptilia" family="Scincidae" genus="Dasia" kingdom="Animalia" order="Squamata" pageId="11" pageNumber="48" phylum="Chordata" rank="species" species="olivacea">
|
||
<emphasis id="D8FBBA295007FF98FC12010EFBC3FEBF" box="[965,1094,260,284]" italics="true" pageId="11" pageNumber="48">D. olivacea</emphasis>
|
||
</taxonomicName>
|
||
from Peninsular
|
||
<collectingCountry id="929826AB5007FF98FAD1010FFAE8FEBF" box="[1286,1389,260,284]" name="Malaysia" pageId="11" pageNumber="48">Malaysia</collectingCountry>
|
||
and Great
|
||
<collectingCountry id="929826AB5007FF98FF0B012CFEB3FE9C" box="[220,310,295,319]" name="India" pageId="11" pageNumber="48">Nicobar</collectingCountry>
|
||
<collectingCountry id="929826AB5007FF98FEEA012CFE01FE9C" box="[317,388,295,319]" name="Iceland" pageId="11" pageNumber="48">Island</collectingCountry>
|
||
, the intraspecific distance was 0.03, which overlapped with known interspecific distances.
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |