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<document id="B876839592081F74DCF867441CABB61E" ID-CLB-Dataset="20536" ID-DOI="10.1099/ijsem.0.003356" ID-GBIF-Dataset="00bec356-cfff-4cf1-b6c4-510525aa49ca" ID-ISSN="1466-5034" ID-Zenodo-Dep="6223905" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_requiresApprovalFor="existingObjects,plazi" IM.taxonomicNames_approvedBy="felipe" checkinTime="1645465882949" checkinUser="felipe" docAuthor="Ou, Fang-hong, Gao, Zeng-hong, Chen, Mei-hong, Bi, Jie-yi &amp; Qiu, Li-hong" docDate="2019" docId="A64D8E2E0E3FE5584000F908940C3659" docLanguage="en" docName="IntJSystEvolMicrobiol.69.5.1496-1503.pdf" docOrigin="International Journal of Systematic and Evolutionary Microbiology 69 (5)" docSource="http://dx.doi.org/10.1099/ijsem.0.003356" docStyle="DocumentStyle:C64F0A4F4C66F6FC2AD4ED89351C6242.3:IntJSystEvolMicrobiol.2017-.journal_article" docStyleId="C64F0A4F4C66F6FC2AD4ED89351C6242" docStyleName="IntJSystEvolMicrobiol.2017-.journal_article" docStyleVersion="3" docTitle="Dyella choica Ou &amp; Gao &amp; Chen &amp; Bi &amp; Qiu 2019, SP. NOV." docType="treatment" docVersion="8" lastPageNumber="1502" masterDocId="5A74F6560E39E55E4079FFC690783040" masterDocTitle="Dyella dinghuensis sp. nov. and Dyella choica sp. nov., isolated from forest soil" masterLastPageNumber="1503" masterPageNumber="1496" pageNumber="1502" updateTime="1699315852626" updateUser="ExternalLinkService">
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<mods:title id="08948A34B42F13E14AC749C2F94FBC33">Dyella dinghuensis sp. nov. and Dyella choica sp. nov., isolated from forest soil</mods:title>
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<mods:namePart id="0C04B5CF2A830680100EE46D1FBD1A39">Ou, Fang-hong</mods:namePart>
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<mods:namePart id="61035532C97C002B923F5B6B4901C4EB">Gao, Zeng-hong</mods:namePart>
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<mods:namePart id="73D6037556E721F44410EDEA5B597F1B">Chen, Mei-hong</mods:namePart>
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<mods:namePart id="876EC805B257C43356F8B01C900AF66F">Bi, Jie-yi</mods:namePart>
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<mods:namePart id="3B23563B45B390AC9B13EA6B1B16162A">Qiu, Li-hong</mods:namePart>
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<mods:title id="197C21F926CDF9BFF8039DB793EC86F6">International Journal of Systematic and Evolutionary Microbiology</mods:title>
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<mods:date id="06B6F6B5AB1447F64E70D0E56F611EAB">2019</mods:date>
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<treatment id="A64D8E2E0E3FE5584000F908940C3659" ID-DOI="http://doi.org/10.5281/zenodo.6314484" ID-GBIF-Taxon="193439205" ID-Zenodo-Dep="6314484" LSID="urn:lsid:plazi:treatment:A64D8E2E0E3FE5584000F908940C3659" httpUri="http://treatment.plazi.org/id/A64D8E2E0E3FE5584000F908940C3659" lastPageNumber="1502" pageId="6" pageNumber="1502">
<subSubSection id="66FE6CB30E3FE5584000F90892B436AB" box="[121,716,1742,1771]" pageId="6" pageNumber="1502" type="nomenclature">
<paragraph id="2E5B3F380E3FE5584000F90892B436AB" blockId="6.[121,759,1742,1949]" box="[121,716,1742,1771]" pageId="6" pageNumber="1502">
<heading id="751388540E3FE5584000F90892B436AB" allCaps="true" bold="true" box="[121,716,1742,1771]" fontSize="12" level="2" pageId="6" pageNumber="1502" reason="3">
<emphasis id="1C90E32A0E3FE5584000F90892B436AB" bold="true" box="[121,716,1742,1771]" pageId="6" pageNumber="1502">
DESCRIPTION OF
<taxonomicName id="E9E444BB0E3FE5584117F908923F36AB" authority="Ou &amp; Gao &amp; Chen &amp; Bi &amp; Qiu, 2019" authorityName="Ou &amp; Gao &amp; Chen &amp; Bi &amp; Qiu" authorityYear="2019" box="[366,583,1742,1771]" class="Gammaproteobacteria" family="Xanthomonadaceae" genus="Dyella" kingdom="Bacteria" order="Xanthomonadales" pageId="6" pageNumber="1502" phylum="Proteobacteria" rank="species" species="choica" status="sp. nov.">
<emphasis id="1C90E32A0E3FE5584117F908923F36AB" bold="true" box="[366,583,1742,1771]" italics="true" pageId="6" pageNumber="1502">DYELLA CHOICA</emphasis>
</taxonomicName>
<taxonomicNameLabel id="07A35E510E3FE5584229F90892B436AB" box="[592,716,1742,1771]" pageId="6" pageNumber="1502" rank="species">SP. NOV.</taxonomicNameLabel>
</emphasis>
</heading>
</paragraph>
</subSubSection>
<subSubSection id="66FE6CB30E3FE5584000F93C914C3771" pageId="6" pageNumber="1502" type="etymology">
<paragraph id="2E5B3F380E3FE5584000F93C914C3771" blockId="6.[121,759,1742,1949]" pageId="6" pageNumber="1502">
<taxonomicName id="E9E444BB0E3FE5584000F93C91713752" authorityName="Ou &amp; Gao &amp; Chen &amp; Bi &amp; Qiu" authorityYear="2019" box="[121,265,1786,1810]" class="Gammaproteobacteria" family="Xanthomonadaceae" genus="Dyella" kingdom="Bacteria" order="Xanthomonadales" pageId="6" pageNumber="1502" phylum="Proteobacteria" rank="species" species="choica">
<emphasis id="1C90E32A0E3FE5584000F93C91713752" box="[121,265,1786,1810]" italics="true" pageId="6" pageNumber="1502">Dyella choica</emphasis>
</taxonomicName>
[cho i.ca. L. fem. adj.
<taxonomicName id="E9E444BB0E3FE5584275F93C92363752" authorityName="Ou &amp; Gao &amp; Chen &amp; Bi &amp; Qiu" authorityYear="2019" box="[524,590,1786,1810]" class="Gammaproteobacteria" family="Xanthomonadaceae" genus="Dyella" kingdom="Bacteria" order="Xanthomonadales" pageId="6" pageNumber="1502" phylum="Proteobacteria" rank="species" species="choica">
<emphasis id="1C90E32A0E3FE5584275F93C92363752" box="[524,590,1786,1810]" italics="true" pageId="6" pageNumber="1502">choica</emphasis>
</taxonomicName>
(from Gr. adj.
<emphasis id="1C90E32A0E3FE5584000F8DF90BB3771" box="[121,195,1817,1841]" italics="true" pageId="6" pageNumber="1502">choicos</emphasis>
) of earth].
</paragraph>
</subSubSection>
<subSubSection id="66FE6CB30E3FE5584000F881940C3659" pageId="6" pageNumber="1502" type="description">
<paragraph id="2E5B3F380E3FE5584000F88195CB3570" blockId="6.[121,759,1742,1949]" lastBlockId="6.[827,1466,182,1562]" pageId="6" pageNumber="1502">
Cells are Gram-stain-negative, aerobic, non-motile, and rod-shaped (0.40.6×0.72.1 µm). Colonies are circular, convex with clear margin and yellow-coloured after 4 days on
<specimenCode id="7E4297430E3FE5584326FF719304308F" box="[863,892,183,207]" collectionCode="R" country="Chile" name="Departamento de Geologia, Universidad de Chile" pageId="6" pageNumber="1502">R2</specimenCode>
A agar.
<collectorName id="83115AEE0E3FE55843ADFF70945E308E" box="[980,1062,182,206]" pageId="6" pageNumber="1502">Growth</collectorName>
was observed on trypticase soy agar,
<specimenCode id="7E4297430E3FE5584342FF10932030AE" box="[827,856,214,238]" collectionCode="R" country="Chile" name="Departamento de Geologia, Universidad de Chile" pageId="6" pageNumber="1502">R2</specimenCode>
A agar and
<collectorName id="83115AEE0E3FE55843ACFF10947530AE" box="[981,1037,214,238]" pageId="6" pageNumber="1502">Luria</collectorName>
<collectorName id="83115AEE0E3FE5584462FF10941030AE" box="[1051,1128,214,238]" pageId="6" pageNumber="1502">Bertani</collectorName>
agar, but not
<collectorName id="83115AEE0E3FE5584486FF10950730AE" box="[1279,1407,214,238]" pageId="6" pageNumber="1502">MacConkey</collectorName>
agar.
<collectorName id="83115AEE0E3FE5584342FF3393F5314D" box="[827,909,245,269]" pageId="6" pageNumber="1502">Growth</collectorName>
on
<specimenCode id="7E4297430E3FE55843CEFF3393AC314D" box="[951,980,245,269]" collectionCode="R" country="Chile" name="Departamento de Geologia, Universidad de Chile" pageId="6" pageNumber="1502">R2</specimenCode>
A agar occurs at 1237
<superScript id="D99192700E3FE55844A9FF3694AF30BD" attach="right" box="[1232,1239,240,253]" fontSize="6" pageId="6" pageNumber="1502">Ǫ</superScript>
C, pH 4.56.5 and in the presence of 01.0 % (w/v)
<collectorName id="83115AEE0E3FE55844DEFED29525316C" box="[1191,1373,276,300]" pageId="6" pageNumber="1502">NaCl. Optimum</collectorName>
growth occurs at 28
<superScript id="D99192700E3FE55843C7FEE993BD317C" attach="right" box="[958,965,303,316]" fontSize="6" pageId="6" pageNumber="1502">Ǫ</superScript>
C, pH 6.0 and without
<collectorName id="83115AEE0E3FE55844C0FEF59488310B" box="[1209,1264,307,331]" pageId="6" pageNumber="1502">NaCl</collectorName>
supplement.
<collectorName id="83115AEE0E3FE5584506FEF593C5312A" pageId="6" pageNumber="1502">Catalase-positive</collectorName>
and oxidase-positive.
<collectorName id="83115AEE0E3FE55844D7FE949481312A" box="[1198,1273,338,362]" pageId="6" pageNumber="1502">Nitrate</collectorName>
is not reduced to nitrite.
<collectorName id="83115AEE0E3FE55843F3FEB793A931C9" box="[906,977,369,393]" pageId="6" pageNumber="1502">Casein</collectorName>
is hydrolysed, but gelatin, starch and
<collectorName id="83115AEE0E3FE558450BFEB495C131C9" box="[1394,1465,370,393]" pageId="6" pageNumber="1502">Tween</collectorName>
80 are not. H
<subScript id="B2603D7D0E3FE55843B0FE5D93AB31EC" attach="both" box="[969,979,411,428]" fontSize="7" pageId="6" pageNumber="1502">2</subScript>
S and indole are not produced.
<collectorName id="83115AEE0E3FE558455DFE56953531E8" box="[1316,1357,400,424]" pageId="6" pageNumber="1502">The</collectorName>
following substrates can be used as sole carbon sources for growth: capric acid,
<subScript id="B2603D7D0E3FE55843C3FE1393B731A7" attach="right" box="[954,975,463,487]" fontSize="7" pageId="6" pageNumber="1502">D-</subScript>
arabinose,
<subScript id="B2603D7D0E3FE558443DFE13942231A7" attach="right" box="[1092,1114,463,487]" fontSize="7" pageId="6" pageNumber="1502">D-</subScript>
galactose,
<subScript id="B2603D7D0E3FE55844B1FE1394A631A7" attach="right" box="[1224,1246,463,487]" fontSize="7" pageId="6" pageNumber="1502">D-</subScript>
glucose,
<subScript id="B2603D7D0E3FE5584542FE13952831A6" attach="right" box="[1339,1360,463,486]" fontSize="7" pageId="6" pageNumber="1502">D-</subScript>
mannose, maltose, sucrose, trehalose, turanose, D- lyxose, D- fucose, glycogen, inulin,
<emphasis id="1C90E32A0E3FE5584382FDC894763265" box="[1019,1038,526,549]" italics="true" pageId="6" pageNumber="1502">N</emphasis>
-acetyl-D- glucosamine and xylitol.
<collectorName id="83115AEE0E3FE55845F6FDCB95C03265" box="[1423,1464,525,549]" pageId="6" pageNumber="1502">The</collectorName>
following substrates are not utilized for growth: aesculin ferric citrate, amygdalin, arbutin, capric acid, D- adonitol, D- arabitol, cellobiose, D- fructose, D- fucose, D- gentiobiose, lactose,
<subScript id="B2603D7D0E3FE558430DFD5693F232E2" attach="right" box="[884,906,650,674]" fontSize="7" pageId="6" pageNumber="1502">D-</subScript>
lyxose,
<subScript id="B2603D7D0E3FE55843A4FD56938A32E2" attach="right" box="[989,1010,650,674]" fontSize="7" pageId="6" pageNumber="1502">D-</subScript>
mannitol, melezitose, melibiose, raffinose, D- ribose, D- sorbitol, D- tagatose, dulcitol, erythritol, glycerol, inositol, L- arabinose, L- arabitol, L- rhamnose, L- sorbose, L- xylose, malic acid, methyl
<emphasis id="1C90E32A0E3FE5584400FD2194F132BF" box="[1145,1161,743,767]" italics="true" pageId="6" pageNumber="1502">
<collectorName id="83115AEE0E3FE5584400FD2194F132BF" box="[1145,1161,743,767]" pageId="6" pageNumber="1502">Oi</collectorName>
</emphasis>
-D- glucopyranoside, methyl
<emphasis id="1C90E32A0E3FE5584342FCC19333335F" box="[827,843,775,799]" italics="true" pageId="6" pageNumber="1502">
<collectorName id="83115AEE0E3FE5584342FCC19333335F" box="[827,843,775,799]" pageId="6" pageNumber="1502">Oi</collectorName>
</emphasis>
-D- mannopyranoside, methyl
<emphasis id="1C90E32A0E3FE55844E7FCC194D6335F" box="[1182,1198,775,799]" italics="true" pageId="6" pageNumber="1502">β</emphasis>
-D- xylopyranoside, phenylacetic acid, potassium 2-ketogluconate, potassium 5- ketogluconate, potassium gluconate, salicin and starch ortrisodium citrate.
<collectorName id="83115AEE0E3FE5584398FCA29472333C" box="[993,1034,868,892]" pageId="6" pageNumber="1502">The</collectorName>
following enzyme activities are positive: alkaline phosphatase, acidphosphatase, arginine dihydrolase,
<emphasis id="1C90E32A0E3FE5584302FC6493F333FA" box="[891,907,930,954]" italics="true" pageId="6" pageNumber="1502">
<collectorName id="83115AEE0E3FE5584302FC6493F333FA" box="[891,907,930,954]" pageId="6" pageNumber="1502">Oi</collectorName>
</emphasis>
-galactosidase,
<emphasis id="1C90E32A0E3FE558444EFC64943F33FA" box="[1079,1095,930,954]" italics="true" pageId="6" pageNumber="1502">
<collectorName id="83115AEE0E3FE558444EFC64943F33FA" box="[1079,1095,930,954]" pageId="6" pageNumber="1502">Oi</collectorName>
</emphasis>
-glucosidase,
<emphasis id="1C90E32A0E3FE558449BFC64948A33FA" box="[1250,1266,930,954]" italics="true" pageId="6" pageNumber="1502">
<collectorName id="83115AEE0E3FE558449BFC64948A33FA" box="[1250,1266,930,954]" pageId="6" pageNumber="1502">Oi</collectorName>
</emphasis>
-mannosidase,
<emphasis id="1C90E32A0E3FE55845E6FC6495D733FA" box="[1439,1455,930,954]" italics="true" pageId="6" pageNumber="1502">
<collectorName id="83115AEE0E3FE55845E6FC6495D733FA" box="[1439,1455,930,954]" pageId="6" pageNumber="1502">Oi</collectorName>
</emphasis>
- fucosidase,
<emphasis id="1C90E32A0E3FE55843CEFC0493BF339A" box="[951,967,962,986]" italics="true" pageId="6" pageNumber="1502">β</emphasis>
-galactosidase,
<emphasis id="1C90E32A0E3FE5584413FC049402339A" box="[1130,1146,962,986]" italics="true" pageId="6" pageNumber="1502">β</emphasis>
-glucosidase, cystine arylamidase, esterase (C8), leucine arylamidase,
<emphasis id="1C90E32A0E3FE5584483FC27957533B8" box="[1274,1293,993,1016]" italics="true" pageId="6" pageNumber="1502">N</emphasis>
-acetyl-
<emphasis id="1C90E32A0E3FE5584524FC27951533B9" box="[1373,1389,993,1017]" italics="true" pageId="6" pageNumber="1502">β</emphasis>
-glucosaminidase and valine arylamidase.
<collectorName id="83115AEE0E3FE55844C6FBC6956D3457" box="[1215,1301,1024,1047]" pageId="6" pageNumber="1502">Esterase</collectorName>
(C4) is weakly positive.
<collectorName id="83115AEE0E3FE55843E6FBD993B03477" box="[927,968,1055,1079]" pageId="6" pageNumber="1502">The</collectorName>
following enzyme activities are negative:
<emphasis id="1C90E32A0E3FE55845DBFBE695D73477" box="[1442,1455,1056,1079]" italics="true" pageId="6" pageNumber="1502">a</emphasis>
- chymotrypsin, lipase (C14), naphthol-AS-BI-phosphohydrolase and trypsin. Ubiquinone-8 is the respiratory quinone, and iso-C
<subScript id="B2603D7D0E3FE5584392FB40946B34D7" attach="left" box="[1003,1043,1158,1175]" fontSize="7" pageId="6" pageNumber="1502">15: 0</subScript>
, iso-C
<subScript id="B2603D7D0E3FE5584422FB4094FB34D7" attach="left" box="[1115,1155,1158,1175]" fontSize="7" pageId="6" pageNumber="1502">16: 0</subScript>
, iso-C
<subScript id="B2603D7D0E3FE55844B2FB40948C34D7" attach="both" box="[1227,1268,1158,1175]" fontSize="7" pageId="6" pageNumber="1502">17: 1</subScript>
<emphasis id="1C90E32A0E3FE558448AFB45957B34D5" box="[1267,1283,1155,1173]" italics="true" pageId="6" pageNumber="1502">Ɯ</emphasis>
9
<emphasis id="1C90E32A0E3FE5584569FBBB956234D4" box="[1296,1306,1149,1172]" italics="true" pageId="6" pageNumber="1502">c</emphasis>
are the major cellular fatty acids (&gt;10 %).
<collectorName id="83115AEE0E3FE5584414FB5D94CB34F4" box="[1133,1203,1179,1204]" pageId="6" pageNumber="1502">The G</collectorName>
+C content of the genomic DNA is 61.7 mol%.
<collectorName id="83115AEE0E3FE5584432FB7D940C3493" box="[1099,1140,1211,1235]" pageId="6" pageNumber="1502">The</collectorName>
major polar lipids consist of phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, one unidentified aminophospholipid, two unidentified aminolipid and one unidentified phospholipid.
</paragraph>
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The
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strain,
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4 M-K27
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(=GDMCC 1.1189
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=LMG 30267
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), was isolated from forest soil sampled at
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,
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, PR
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. The 16S rRNA gene sequence and whole genome sequence of strain DHOA06
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have been deposited in DDBJ/EMBL/ GenBank under accession numbers
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and RYYV00000000, respectively.
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