Dyella dinghuensis sp. nov. and Dyella choica sp. nov., isolated from forest soil
Author
Ou, Fang-hong
Author
Gao, Zeng-hong
Author
Chen, Mei-hong
Author
Bi, Jie-yi
Author
Qiu, Li-hong
text
International Journal of Systematic and Evolutionary Microbiology
2019
2019-05-01
69
5
1496
1503
http://dx.doi.org/10.1099/ijsem.0.003356
journal article
20536
10.1099/ijsem.0.003356
00bec356-cfff-4cf1-b6c4-510525aa49ca
1466-5034
6223905
DESCRIPTION OF
DYELLA CHOICA
SP. NOV.
Dyella choica
[cho′ i.ca. L. fem. adj.
choica
(from Gr. adj.
choicos
) of earth].
Cells are Gram-stain-negative, aerobic, non-motile, and rod-shaped (0.4–0.6×0.7–2.1 µm). Colonies are circular, convex with clear margin and yellow-coloured after 4 days on
R2
A agar.
Growth
was observed on trypticase soy agar,
R2
A agar and
Luria
–
Bertani
agar, but not
MacConkey
agar.
Growth
on
R2
A agar occurs at 12–37
Ǫ
C, pH 4.5–6.5 and in the presence of 0–1.0 % (w/v)
NaCl. Optimum
growth occurs at 28
Ǫ
C, pH 6.0 and without
NaCl
supplement.
Catalase-positive
and oxidase-positive.
Nitrate
is not reduced to nitrite.
Casein
is hydrolysed, but gelatin, starch and
Tween
80 are not. H
2
S and indole are not produced.
The
following substrates can be used as sole carbon sources for growth: capric acid,
D-
arabinose,
D-
galactose,
D-
glucose,
D-
mannose, maltose, sucrose, trehalose, turanose, D- lyxose, D- fucose, glycogen, inulin,
N
-acetyl-D- glucosamine and xylitol.
The
following substrates are not utilized for growth: aesculin ferric citrate, amygdalin, arbutin, capric acid, D- adonitol, D- arabitol, cellobiose, D- fructose, D- fucose, D- gentiobiose, lactose,
D-
lyxose,
D-
mannitol, melezitose, melibiose, raffinose, D- ribose, D- sorbitol, D- tagatose, dulcitol, erythritol, glycerol, inositol, L- arabinose, L- arabitol, L- rhamnose, L- sorbose, L- xylose, malic acid, methyl
Oi
-D- glucopyranoside, methyl
Oi
-D- mannopyranoside, methyl
β
-D- xylopyranoside, phenylacetic acid, potassium 2-ketogluconate, potassium 5- ketogluconate, potassium gluconate, salicin and starch ortrisodium citrate.
The
following enzyme activities are positive: alkaline phosphatase, acidphosphatase, arginine dihydrolase,
Oi
-galactosidase,
Oi
-glucosidase,
Oi
-mannosidase,
Oi
- fucosidase,
β
-galactosidase,
β
-glucosidase, cystine arylamidase, esterase (C8), leucine arylamidase,
N
-acetyl-
β
-glucosaminidase and valine arylamidase.
Esterase
(C4) is weakly positive.
The
following enzyme activities are negative:
a
- chymotrypsin, lipase (C14), naphthol-AS-BI-phosphohydrolase and trypsin. Ubiquinone-8 is the respiratory quinone, and iso-C
15: 0
, iso-C
16: 0
, iso-C
17: 1
Ɯ
9
c
are the major cellular fatty acids (>10 %).
The G
+C content of the genomic DNA is 61.7 mol%.
The
major polar lipids consist of phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, one unidentified aminophospholipid, two unidentified aminolipid and one unidentified phospholipid.
The
type
strain,
4 M-K27
T
(=GDMCC 1.1189
T
=LMG 30267
T
), was isolated from forest soil sampled at
Dinghushan Biosphere Reserve
,
Guangdong Province
, PR
China
. The 16S rRNA gene sequence and whole genome sequence of strain DHOA06
T
have been deposited in DDBJ/EMBL/ GenBank under accession numbers
KY433857
and RYYV00000000, respectively.