168 lines
16 KiB
XML
168 lines
16 KiB
XML
<document id="CDF14DB3C014EBCED2589843F4CE1AD6" ID-DOI="10.12651/JSR.2020.9.2.085" ID-ISSN="2713-8615" ID-Zenodo-Dep="13140525" IM.bibliography_approvedBy="felipe" IM.illustrations_approvedBy="felipe" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.taxonomicNames_approvedBy="felipe" IM.treatments_approvedBy="felipe" checkinTime="1722403497596" checkinUser="felipe" docAuthor="Han, Joo Hyun, Maeng, Soohyun, Park, Yuna, Lee, Sang Eun, Lee, Byoung-Hee & Kim, Ki-eun Lee and Myung Kyum" docDate="2020" docId="5E1987B87716551E2B8FA1F6238AFB33" docLanguage="en" docName="JSpeciesRes.9.2.85-104.pdf" docOrigin="Journal of Species Research 9 (2)" docStyle="DocumentStyle:4D398BFF45FF8CA9E08F546BB06AE372.2:JSpeciesRes.2012-.journal_article" docStyleId="4D398BFF45FF8CA9E08F546BB06AE372" docStyleName="JSpeciesRes.2012-.journal_article" docStyleVersion="2" docTitle="Oryzomicrobium terrae BT" docType="treatment" docVersion="2" lastPageNumber="102" masterDocId="A220FFC07707550F2B1FA51B2773FFF7" masterDocTitle="Identification of 12 radiation-resistant bacterial species in the phylum Proteobacteria new to Korea" masterLastPageNumber="104" masterPageNumber="85" pageNumber="102" updateTime="1722403955945" updateUser="ExternalLinkService" zenodo-license-document="CC-BY-4.0">
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<mods:mods id="FF70553EDF8866BBF9A81DCA0FD0C655" xmlns:mods="http://www.loc.gov/mods/v3">
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<mods:titleInfo id="503D6DC82238B26F820BEDC08B69BF73">
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<mods:title id="E8DBBDF35AF3271B9E5F37162A11DCEF">Identification of 12 radiation-resistant bacterial species in the phylum Proteobacteria new to Korea</mods:title>
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</mods:titleInfo>
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<mods:name id="B6526BFF25E38999C9376F7DAF8178EC" type="personal">
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<mods:roleTerm id="5A32E771D76E33139355F1B782CB5813">Author</mods:roleTerm>
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<mods:namePart id="3B6D424537855E354B184E77495E1052">Han, Joo Hyun</mods:namePart>
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<mods:affiliation id="19E31F43437D3D6C915E5F66F3DB180A">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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</mods:name>
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<mods:name id="6DFB1E736FC76A9775CB71632992968A" type="personal">
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<mods:roleTerm id="54ECDBC5BBD28BA567CAD1BCBD3F1DA5">Author</mods:roleTerm>
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<mods:namePart id="E6D4A01D333E88ED6D7178937015AF03">Maeng, Soohyun</mods:namePart>
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<mods:affiliation id="4A7E16C164CBB41A2B1C5717BDD42CA1">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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</mods:name>
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<mods:name id="0D73E609049AF15A5D737C3AAB90503B" type="personal">
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<mods:roleTerm id="7F131ABC4B16747F5FF63B92FB409356">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="438A2954A8F5F5F4CF27C5F0126A3082">Park, Yuna</mods:namePart>
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<mods:affiliation id="DE6D2FD06797870397EEAD86C4474766">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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</mods:name>
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<mods:name id="61EF3558A666FC04CAEA59317E19761F" type="personal">
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<mods:role id="A5B3BCF1CA8684E36895367C2AF68137">
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<mods:roleTerm id="C1D29786E94406C77E8FA825B7CC309A">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="8C3279FB3B8E3FEA83105D77F9B990C9">Lee, Sang Eun</mods:namePart>
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<mods:affiliation id="CCFB00ADF8A15607DE89A881D5018657">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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</mods:name>
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<mods:name id="E743CD19D845452BDF8F607D49198B24" type="personal">
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<mods:namePart id="CF272C0A8A4192FB4BE89F860C60AC58">Lee, Byoung-Hee</mods:namePart>
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<mods:affiliation id="93207E07F8DC55BA722B025D5298DE88">Environmental Research Complex, National Institute of Biological Resources, Incheon 22689, Republic of Korea</mods:affiliation>
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</mods:name>
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<mods:name id="AC7CF16DE1BADB2AACB4083AFA7FE971" type="personal">
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<mods:roleTerm id="196E7D4D5305B9852E49A39C2B35244D">Author</mods:roleTerm>
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<mods:namePart id="C5C1FFED7E50803C402CAC0B7F30DD4C">Kim, Ki-eun Lee and Myung Kyum</mods:namePart>
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<mods:typeOfResource id="0B9B978896F978EEEA85AFA1247337E1">text</mods:typeOfResource>
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<mods:titleInfo id="E1D0356C7C46B4D37428D2F3880ADAE4">
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<mods:title id="040F4E4670BA509E9A40B729D22D0C79">Journal of Species Research</mods:title>
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<mods:part id="0B917366DF4F718DA63B0407DD7B08A2">
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<mods:date id="F32D392B3D7C16D3A0286428B87A4BB6">2020</mods:date>
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<mods:detail id="DF61901E7857555C4A6994DDB4707F9F" type="volume">
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<mods:number id="E7B63AC36FF5B30DE173D690342E57CA">9</mods:number>
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</mods:detail>
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<mods:detail id="D8D42E0EE1224EF45F72F87B90D07312" type="issue">
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<mods:number id="D8CB7BAA3E53C2B7F486277C81847961">2</mods:number>
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<mods:start id="5C7435310E3416E807A432E295E42A4D">85</mods:start>
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<mods:end id="36EC4926DDC736D26EDB45F902D59852">104</mods:end>
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<mods:classification id="C67624F39116F1BB0AC66D2E7677B8EF">journal article</mods:classification>
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<mods:identifier id="5B3D4AD79A6E09B71DDF38104D7280DD" type="DOI">10.12651/JSR.2020.9.2.085</mods:identifier>
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<mods:identifier id="EE6F506423AE96C430F0940D9BD9DBF8" type="ISSN">2713-8615</mods:identifier>
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<mods:identifier id="87011721976157C9A3EF7C38F31B6A19" type="Zenodo-Dep">13140525</mods:identifier>
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<treatment id="5E1987B87716551E2B8FA1F6238AFB33" ID-DOI="http://doi.org/10.5281/zenodo.13140562" ID-Zenodo-Dep="13140562" LSID="urn:lsid:plazi:treatment:5E1987B87716551E2B8FA1F6238AFB33" httpUri="http://treatment.plazi.org/id/5E1987B87716551E2B8FA1F6238AFB33" lastPageNumber="102" pageId="17" pageNumber="102">
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<subSubSection id="9EAA65257716551E2B8FA1F62330FB73" pageId="17" pageNumber="102" type="nomenclature">
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<paragraph id="D60F36AE7716551E2B8FA1F625F8FAF2" blockId="17.[144,651,1261,1285]" box="[144,651,1261,1285]" pageId="17" pageNumber="102">
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<heading id="8D4781C27716551E2B8FA1F625F8FAF2" box="[144,651,1261,1285]" fontSize="10" level="2" pageId="17" pageNumber="102" reason="5">
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<emphasis id="E4C4EABC7716551E2B8FA1F625F8FAF2" bold="true" box="[144,651,1261,1285]" pageId="17" pageNumber="102">
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Description of
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<taxonomicName id="11B04D2D7716551E2A28A1F62511FAF2" authority="BT" authorityName="BT" box="[311,610,1261,1285]" class="Gammaproteobacteria" family="Rhodocyclaceae" genus="Oryzomicrobium" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Burkholderiales" pageId="17" pageNumber="102" phylum="Proteobacteria" rank="species" species="terrae">
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<emphasis id="E4C4EABC7716551E2A28A1F6254BFAF2" bold="true" box="[311,568,1261,1285]" italics="true" pageId="17" pageNumber="102">Oryzomicrobium terrae</emphasis>
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BT
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</taxonomicName>
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344
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</emphasis>
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</heading>
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</paragraph>
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<paragraph id="D60F36AE7716551E2BB9A0052330FB73" blockId="17.[144,749,1310,1980]" lastBlockId="17.[809,1414,261,1221]" pageId="17" pageNumber="102">
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Cells are Gram-stain-negative, flagellated, and rod-shaped. Colonies are pale yellow-colored after 3 days of incubation on R2A at 25°C. In the BIOLOG GEN III, positive for pH 6,
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<emphasis id="E4C4EABC7716551E2A53A09B262EFA60" box="[332,349,1408,1431]" italics="true" pageId="17" pageNumber="102">N</emphasis>
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-acetyl neuraminic acid, 1% NaCl, 4% NaCl, 1% sodium lactate, D- serine, glyctl-L- proline, L- alanine, L- aspartic acid, L- glutamic acid, L- histidine, L- serine, guanidine HCl, methyl pyruvate, L- lactic acid, citric acid, L- malic acid, nalidixic acid, lithium chloride, potassium tellurite, tween 40,
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<emphasis id="E4C4EABC7716551E2ABCA33A26C0F9CF" box="[419,435,1569,1592]" italics="true" pageId="17" pageNumber="102">α</emphasis>
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-hydroxy-butyric acid,
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<emphasis id="E4C4EABC7716551E29B0A33A25CCF9CF" box="[687,703,1569,1592]" italics="true" pageId="17" pageNumber="102">α</emphasis>
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-hydroxy-butyric acid,
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<emphasis id="E4C4EABC7716551E2A77A35A2604F9AE" box="[360,375,1601,1625]" italics="true" pageId="17" pageNumber="102">β</emphasis>
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-
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<subScript id="4A3434EB7716551E2A61A35A269CF9A0" attach="left" box="[382,495,1601,1625]" fontSize="7" pageId="17" pageNumber="102">hydroxy-D</subScript>
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,
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<subScript id="4A3434EB7716551E2AE0A35C2561F9AE" attach="right" box="[511,530,1601,1625]" fontSize="7" pageId="17" pageNumber="102">L-</subScript>
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butyric acid,
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<emphasis id="E4C4EABC7716551E29BAA35A25C6F9AF" box="[677,693,1601,1624]" italics="true" pageId="17" pageNumber="102">α</emphasis>
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-keto butyric acid, acetoacetic acid, propionic acid, acetic acid, formic acid, aztreonam, sodium butyrate and sodium bromate; weak positive for dextrin, D- maltose, D- trehalose,
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<subScript id="4A3434EB7716551E2BD2A3D32791F92D" attach="right" box="[205,226,1730,1754]" fontSize="7" pageId="17" pageNumber="102">D-</subScript>
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cellobiolose, gentiobiose, sucrose,
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<subScript id="4A3434EB7716551E296FA3D325F6F92E" attach="right" box="[624,645,1730,1753]" fontSize="7" pageId="17" pageNumber="102">D-</subScript>
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turanose, stachyose, D- raffinose, D- melibiose,
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<emphasis id="E4C4EABC7716551E293CA3F92541F90D" box="[547,562,1762,1786]" italics="true" pageId="17" pageNumber="102">β</emphasis>
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-methyl-D- glucoside, D- salicin,
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<emphasis id="E4C4EABC7716551E2A2DA2182637F8ED" box="[306,324,1795,1818]" italics="true" pageId="17" pageNumber="102">N</emphasis>
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-acetyl-D- glucosamine,
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<emphasis id="E4C4EABC7716551E2922A218253CF8ED" box="[573,591,1795,1818]" italics="true" pageId="17" pageNumber="102">N</emphasis>
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-acetyl-
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<emphasis id="E4C4EABC7716551E2980A21925DDF8ED" box="[671,686,1794,1818]" italics="true" pageId="17" pageNumber="102">β</emphasis>
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-mannosamin,
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<emphasis id="E4C4EABC7716551E2BE4A2382678F8CD" box="[251,267,1827,1850]" italics="true" pageId="17" pageNumber="102">α</emphasis>
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-D- glucose, D- mannose, D- fructose, D- galactose, 3-methyl-glucose,
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<subScript id="4A3434EB7716551E2A89A25226DAF8AC" attach="right" box="[406,425,1859,1883]" fontSize="7" pageId="17" pageNumber="102">D-</subScript>
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fucose,
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<subScript id="4A3434EB7716551E291FA2522560F8AC" attach="right" box="[512,531,1859,1883]" fontSize="7" pageId="17" pageNumber="102">L-</subScript>
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fucose,
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<subScript id="4A3434EB7716551E2975A252250FF8AC" attach="right" box="[618,636,1859,1883]" fontSize="7" pageId="17" pageNumber="102">L-</subScript>
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rhamnose, D- sorbitol, D- mannitol, D- arabitol, myo-inositol, glycerol, D- glucose-6-PO
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<subScript id="4A3434EB7716551E2A27A2902632F86B" attach="left" box="[312,321,1931,1948]" fontSize="7" pageId="17" pageNumber="102">4</subScript>
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, D- fructose-6-PO
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<subScript id="4A3434EB7716551E2AE2A2902575F86B" attach="left" box="[509,518,1931,1948]" fontSize="7" pageId="17" pageNumber="102">4</subScript>
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, D- serine, L- arginine, L- pyroglutamic acid, D- galacturonic acid, D- gluconic acid, D- glucuronic acid, quinic acid, D- saccharic acid, bromo-succinic acid and
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<emphasis id="E4C4EABC7716551E2F0FA43D236CFECA" box="[1040,1055,294,317]" italics="true" pageId="17" pageNumber="102">γ</emphasis>
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-amino-butryric acid; but negative for pH 5,
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<emphasis id="E4C4EABC7716551E2891A45D24EDFEAA" box="[910,926,326,349]" italics="true" pageId="17" pageNumber="102">α</emphasis>
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-D- lactose,
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<emphasis id="E4C4EABC7716551E2F0EA45D2350FEAA" box="[1041,1059,326,349]" italics="true" pageId="17" pageNumber="102">N</emphasis>
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-acetyl-D- galactosamin, 8% NaCl, inosine, fusidic acid, D- aspartic acid, troleandomycin, rifamycin SV, minocycline, gelatin, lincomycin, niaproof 4, pectin, L- galactonic acid lactone, glucuronamide, mucic acid, vancomycin, tetrazolium violet, tetrazolium blue,
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<emphasis id="E4C4EABC7716551E2836A4FC2445FE09" box="[809,822,487,510]" italics="true" pageId="17" pageNumber="102">p</emphasis>
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-hydroxy-pheylacetic acid,
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<subScript id="4A3434EB7716551E2F79A4F62308FE08" attach="right" box="[1126,1147,487,511]" fontSize="7" pageId="17" pageNumber="102">D-</subScript>
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lactic acid methyl ester,
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<emphasis id="E4C4EABC7716551E2836A713244AFDE8" box="[809,825,520,543]" italics="true" pageId="17" pageNumber="102">α</emphasis>
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-keto-glutaric acid and D- malic acid. In API 20NE test, weak positive for indole production on tryptophan and esculin hydrolysis; but negative for reduction of nitrates (NO
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<subScript id="4A3434EB7716551E2848A76B242CFD76" attach="left" box="[855,863,624,641]" fontSize="7" pageId="17" pageNumber="102">3</subScript>
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) to nitrite (NO
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<subScript id="4A3434EB7716551E28E0A76B237BFD76" attach="left" box="[1023,1032,624,641]" fontSize="7" pageId="17" pageNumber="102">2</subScript>
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<superScript id="21C59BE67716551E2F17A77D2361FD84" attach="right" box="[1032,1042,614,627]" fontSize="7" pageId="17" pageNumber="102">-</superScript>
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), reduction of nitrates (NO
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<subScript id="4A3434EB7716551E2E2DA76B2249FD76" attach="left" box="[1330,1338,624,641]" fontSize="7" pageId="17" pageNumber="102">3</subScript>
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) to nitrogen (N
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<subScript id="4A3434EB7716551E2890A78B24EBFD56" attach="left" box="[911,920,656,673]" fontSize="7" pageId="17" pageNumber="102">2</subScript>
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), glucose fermentation, arginine dihydrolase, urease, gelatin hydrolysis,
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<emphasis id="E4C4EABC7716551E2F47A7B22314FD36" box="[1112,1127,681,705]" italics="true" pageId="17" pageNumber="102">β</emphasis>
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-galactosidase. Potassium gluconate and malic acid adipic acid (weak) were utilized whereas, D- glucose, L- arabinose, D- mannose, D- mannitol,
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<emphasis id="E4C4EABC7716551E2836A6112448FCD6" box="[809,827,778,801]" italics="true" pageId="17" pageNumber="102">N</emphasis>
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-acetyl-D- glucosamine, D- maltose, capric acid, trisodium citrate and phenylacetic acid were not utilized. In API 32GN test, inositol, sodium acetate, lactic acid,
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<subScript id="4A3434EB7716551E2E3FA64B2241FC95" attach="right" box="[1312,1330,842,866]" fontSize="7" pageId="17" pageNumber="102">L-</subScript>
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alanine, L- serine, propionic acid, valeric acid, trisodium citrate, L- histidine, 3-hydroxybutyric acid were utilized whereas, L- rhamnose,
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<emphasis id="E4C4EABC7716551E28C2A6B0249CFC35" box="[989,1007,939,962]" italics="true" pageId="17" pageNumber="102">N</emphasis>
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-acetyl-glucosamine, D- ribose, D- saccharose (sucrose), D- maltose, itaconic acid, suberic acid, sodium malonate, potassium 5-ketogluconate, glycogen, 3-hydroxybenzoic acid, D- mannitol, D- glucose, salicin, D- melibiose, D- fucose, D- sorbitol, L- arabinose, capric acid, potassium 2-ketogluconate, 4-hydroxybenzoic acid and L- proline were not utilized.
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</paragraph>
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</subSubSection>
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<subSubSection id="9EAA65257716551E285FA197238AFB33" pageId="17" pageNumber="102" type="description">
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<paragraph id="D60F36AE7716551E285FA197238AFB33" blockId="17.[809,1414,261,1221]" pageId="17" pageNumber="102">
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Strain BT344 (
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<emphasis id="E4C4EABC7716551E28F9A1972489FB53" bold="true" box="[998,1018,1164,1188]" pageId="17" pageNumber="102">=</emphasis>
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NIBRBAC000503015) was isolated from a soil sample from
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<collectingRegion id="1474F84C7716551E2F2FA1B62328FB32" box="[1072,1115,1197,1221]" country="South Korea" name="Jeju" pageId="17" pageNumber="102">Jeju</collectingRegion>
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Island,
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<collectingCountry id="AEA7763E7716551E2FAFA1B62386FB33" box="[1200,1269,1197,1220]" name="South Korea" pageId="17" pageNumber="102">Korea</collectingCountry>
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.
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</paragraph>
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</subSubSection>
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</treatment>
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</document> |