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<mods:title id="599E14F098F6BDF5E7782BCC842204B0">A new record of Pseudoleucon japonicus (Crustacea: Cumacea: Leuconidae) from Korea</mods:title>
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<mods:title id="A5633A6702C1799B8F6C323A2ED35838">A new record of Pseudoleucon japonicus (Crustacea: Cumacea: Leuconidae) from Korea</mods:title>
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<treatment id="038F87FAFFD7656357CB9748FB50FD24" LSID="urn:lsid:plazi:treatment:038F87FAFFD7656357CB9748FB50FD24" httpUri="http://treatment.plazi.org/id/038F87FAFFD7656357CB9748FB50FD24" lastPageId="4" lastPageNumber="76" pageId="1" pageNumber="73">
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@ -42,9 +43,9 @@
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<bibRefCitation id="EFB74B1DFFD7656656A59748FDC4FC87" author="Gamo, S." box="[448,584,809,834]" pageId="1" pageNumber="73" pagination="241 - 253" refId="ref3198" refString="Gamo, S. 1964. On three new species of Cumacea from the southern sea of Japan. Crustaceana 7 (4): 241 - 253." type="journal article" year="1964">Gamô, 1964</bibRefCitation>
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</taxonomicName>
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(
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<figureCitation id="131D2A69FFD7656655319748FD13FC87" box="[596,671,809,834]" captionStart="Fig" captionStartId="2.[144,176,1949,1971]" captionTargetBox="[201,1358,260,1900]" captionTargetId="figure-10@2.[196,1361,257,1916]" captionTargetPageId="2" captionText="Fig. 1. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6mm.A, habitus, lateral view; B, carapace and pereon, dorsal view; C, antenna 1; D, antenna 2; E, maxilliped 3; F, pereopod 1; G, habitus of subadult female, lateral view, 2.7mm. Scale bars:A, B, G=0.5 mm, C-F=0.2mm." pageId="1" pageNumber="73">Figs. 1</figureCitation>
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<figureCitation id="131D2A69FFD7656655319748FD13FC87" box="[596,671,809,834]" captionStart="Fig" captionStartId="2.[144,176,1949,1971]" captionTargetBox="[201,1358,260,1900]" captionTargetId="figure-10@2.[196,1361,257,1916]" captionTargetPageId="2" captionText="Fig. 1. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6mm.A, habitus, lateral view; B, carapace and pereon, dorsal view; C, antenna 1; D, antenna 2; E, maxilliped 3; F, pereopod 1; G, habitus of subadult female, lateral view, 2.7mm. Scale bars:A, B, G=0.5 mm, C-F=0.2mm." figureDoi="http://doi.org/10.5281/zenodo.13140479" httpUri="https://zenodo.org/record/13140479/files/figure.png" pageId="1" pageNumber="73">Figs. 1</figureCitation>
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,
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<figureCitation id="131D2A69FFD7656655C89748FD37FC84" box="[685,699,809,833]" captionStart="Fig" captionStartId="3.[174,207,1558,1580]" captionTargetBox="[233,1374,262,1520]" captionTargetId="figure-210@3.[232,1375,257,1525]" captionTargetPageId="3" captionText="Fig. 2. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6 mm.A, pereopod 2; B, pereopod 3; C, pereopod 4; D, pereopod 5; E, pleopod 1; F, uropods and last pleonite. Scale bars:A-C, F=0.2 mm, D, E=0.1 mm." pageId="1" pageNumber="73">2</figureCitation>
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<figureCitation id="131D2A69FFD7656655C89748FD37FC84" box="[685,699,809,833]" captionStart="Fig" captionStartId="3.[174,207,1558,1580]" captionTargetBox="[233,1374,262,1520]" captionTargetId="figure-210@3.[232,1375,257,1525]" captionTargetPageId="3" captionText="Fig. 2. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6 mm.A, pereopod 2; B, pereopod 3; C, pereopod 4; D, pereopod 5; E, pleopod 1; F, uropods and last pleonite. Scale bars:A-C, F=0.2 mm, D, E=0.1 mm." figureDoi="http://doi.org/10.5281/zenodo.13140481" httpUri="https://zenodo.org/record/13140481/files/figure.png" pageId="1" pageNumber="73">2</figureCitation>
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)
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</emphasis>
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</heading>
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@ -112,46 +113,46 @@
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<paragraph id="8B9936ECFFD7656657CB908CFB2EFDDA" blockId="1.[174,779,971,1995]" lastBlockId="1.[839,1445,261,1995]" pageId="1" pageNumber="73">
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<emphasis id="B952EAFEFFD7656657CB908CFEB9FAC0" bold="true" box="[174,309,1261,1285]" pageId="1" pageNumber="73">Description.</emphasis>
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Subadult male (NIBRIV0000299463). Body length (
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<figureCitation id="131D2A69FFD765665665916CFEDBFAE3" box="[256,343,1293,1318]" captionStart="Fig" captionStartId="2.[144,176,1949,1971]" captionTargetBox="[201,1358,260,1900]" captionTargetId="figure-10@2.[196,1361,257,1916]" captionTargetPageId="2" captionText="Fig. 1. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6mm.A, habitus, lateral view; B, carapace and pereon, dorsal view; C, antenna 1; D, antenna 2; E, maxilliped 3; F, pereopod 1; G, habitus of subadult female, lateral view, 2.7mm. Scale bars:A, B, G=0.5 mm, C-F=0.2mm." pageId="1" pageNumber="73">Fig. 1A</figureCitation>
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<figureCitation id="131D2A69FFD765665665916CFEDBFAE3" box="[256,343,1293,1318]" captionStart="Fig" captionStartId="2.[144,176,1949,1971]" captionTargetBox="[201,1358,260,1900]" captionTargetId="figure-10@2.[196,1361,257,1916]" captionTargetPageId="2" captionText="Fig. 1. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6mm.A, habitus, lateral view; B, carapace and pereon, dorsal view; C, antenna 1; D, antenna 2; E, maxilliped 3; F, pereopod 1; G, habitus of subadult female, lateral view, 2.7mm. Scale bars:A, B, G=0.5 mm, C-F=0.2mm." figureDoi="http://doi.org/10.5281/zenodo.13140479" httpUri="https://zenodo.org/record/13140479/files/figure.png" pageId="1" pageNumber="73">Fig. 1A</figureCitation>
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)
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<quantity id="4CDE9B09FFD76566560D916CFE31FAE0" box="[360,445,1293,1317]" metricMagnitude="-3" metricUnit="m" metricValue="2.6" pageId="1" pageNumber="73" unit="mm" value="2.6">2.6 mm</quantity>
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, excluding uropods. Carapace (
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<figureCitation id="131D2A69FFD7656657D3914FFEA6FA83" box="[182,298,1326,1350]" captionStart="Fig" captionStartId="2.[144,176,1949,1971]" captionTargetBox="[201,1358,260,1900]" captionTargetId="figure-10@2.[196,1361,257,1916]" captionTargetPageId="2" captionText="Fig. 1. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6mm.A, habitus, lateral view; B, carapace and pereon, dorsal view; C, antenna 1; D, antenna 2; E, maxilliped 3; F, pereopod 1; G, habitus of subadult female, lateral view, 2.7mm. Scale bars:A, B, G=0.5 mm, C-F=0.2mm." pageId="1" pageNumber="73">Fig. 1A, B</figureCitation>
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<figureCitation id="131D2A69FFD7656657D3914FFEA6FA83" box="[182,298,1326,1350]" captionStart="Fig" captionStartId="2.[144,176,1949,1971]" captionTargetBox="[201,1358,260,1900]" captionTargetId="figure-10@2.[196,1361,257,1916]" captionTargetPageId="2" captionText="Fig. 1. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6mm.A, habitus, lateral view; B, carapace and pereon, dorsal view; C, antenna 1; D, antenna 2; E, maxilliped 3; F, pereopod 1; G, habitus of subadult female, lateral view, 2.7mm. Scale bars:A, B, G=0.5 mm, C-F=0.2mm." figureDoi="http://doi.org/10.5281/zenodo.13140479" httpUri="https://zenodo.org/record/13140479/files/figure.png" pageId="1" pageNumber="73">Fig. 1A, B</figureCitation>
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) slightly longer than 1/3 of body length, 1.7 times as long as its depth, 1.6 times as long as its width; shape nearly rectangular in dorsal view, with 1 pair of short oblique ridges, ridges beginning near end of frontal lobe and merging with dorsal median carina. Antennal notch and antero-lateral angle indistinct. Antero-lateral margin with strong serrations. Pseudorostral lobes (
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<figureCitation id="131D2A69FFD7656655BA918EFF7EF9ED" captionStart="Fig" captionStartId="2.[144,176,1949,1971]" captionTargetBox="[201,1358,260,1900]" captionTargetId="figure-10@2.[196,1361,257,1916]" captionTargetPageId="2" captionText="Fig. 1. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6mm.A, habitus, lateral view; B, carapace and pereon, dorsal view; C, antenna 1; D, antenna 2; E, maxilliped 3; F, pereopod 1; G, habitus of subadult female, lateral view, 2.7mm. Scale bars:A, B, G=0.5 mm, C-F=0.2mm." pageId="1" pageNumber="73">Fig. 1A, B</figureCitation>
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<figureCitation id="131D2A69FFD7656655BA918EFF7EF9ED" captionStart="Fig" captionStartId="2.[144,176,1949,1971]" captionTargetBox="[201,1358,260,1900]" captionTargetId="figure-10@2.[196,1361,257,1916]" captionTargetPageId="2" captionText="Fig. 1. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6mm.A, habitus, lateral view; B, carapace and pereon, dorsal view; C, antenna 1; D, antenna 2; E, maxilliped 3; F, pereopod 1; G, habitus of subadult female, lateral view, 2.7mm. Scale bars:A, B, G=0.5 mm, C-F=0.2mm." figureDoi="http://doi.org/10.5281/zenodo.13140479" httpUri="https://zenodo.org/record/13140479/files/figure.png" pageId="1" pageNumber="73">Fig. 1A, B</figureCitation>
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) extending anterodorsally, truncated, and serrated. Ocular lobe (
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<figureCitation id="131D2A69FFD7656656079251FE5FF98D" box="[354,467,1584,1608]" captionStart="Fig" captionStartId="2.[144,176,1949,1971]" captionTargetBox="[201,1358,260,1900]" captionTargetId="figure-10@2.[196,1361,257,1916]" captionTargetPageId="2" captionText="Fig. 1. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6mm.A, habitus, lateral view; B, carapace and pereon, dorsal view; C, antenna 1; D, antenna 2; E, maxilliped 3; F, pereopod 1; G, habitus of subadult female, lateral view, 2.7mm. Scale bars:A, B, G=0.5 mm, C-F=0.2mm." pageId="1" pageNumber="73">Fig. 1A, B</figureCitation>
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<figureCitation id="131D2A69FFD7656656079251FE5FF98D" box="[354,467,1584,1608]" captionStart="Fig" captionStartId="2.[144,176,1949,1971]" captionTargetBox="[201,1358,260,1900]" captionTargetId="figure-10@2.[196,1361,257,1916]" captionTargetPageId="2" captionText="Fig. 1. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6mm.A, habitus, lateral view; B, carapace and pereon, dorsal view; C, antenna 1; D, antenna 2; E, maxilliped 3; F, pereopod 1; G, habitus of subadult female, lateral view, 2.7mm. Scale bars:A, B, G=0.5 mm, C-F=0.2mm." figureDoi="http://doi.org/10.5281/zenodo.13140479" httpUri="https://zenodo.org/record/13140479/files/figure.png" pageId="1" pageNumber="73">Fig. 1A, B</figureCitation>
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) very small, without lens and pigment. Pereon (
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<figureCitation id="131D2A69FFD76566560E9231FE6CF9AD" box="[363,480,1616,1640]" captionStart="Fig" captionStartId="2.[144,176,1949,1971]" captionTargetBox="[201,1358,260,1900]" captionTargetId="figure-10@2.[196,1361,257,1916]" captionTargetPageId="2" captionText="Fig. 1. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6mm.A, habitus, lateral view; B, carapace and pereon, dorsal view; C, antenna 1; D, antenna 2; E, maxilliped 3; F, pereopod 1; G, habitus of subadult female, lateral view, 2.7mm. Scale bars:A, B, G=0.5 mm, C-F=0.2mm." pageId="1" pageNumber="73">Fig. 1A, B</figureCitation>
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<figureCitation id="131D2A69FFD76566560E9231FE6CF9AD" box="[363,480,1616,1640]" captionStart="Fig" captionStartId="2.[144,176,1949,1971]" captionTargetBox="[201,1358,260,1900]" captionTargetId="figure-10@2.[196,1361,257,1916]" captionTargetPageId="2" captionText="Fig. 1. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6mm.A, habitus, lateral view; B, carapace and pereon, dorsal view; C, antenna 1; D, antenna 2; E, maxilliped 3; F, pereopod 1; G, habitus of subadult female, lateral view, 2.7mm. Scale bars:A, B, G=0.5 mm, C-F=0.2mm." figureDoi="http://doi.org/10.5281/zenodo.13140479" httpUri="https://zenodo.org/record/13140479/files/figure.png" pageId="1" pageNumber="73">Fig. 1A, B</figureCitation>
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) 0.7 times carapace length, shorter than 1/3 of body length. Pleon (
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<figureCitation id="131D2A69FFD7656655349211FD3CF94C" box="[593,688,1648,1673]" captionStart="Fig" captionStartId="2.[144,176,1949,1971]" captionTargetBox="[201,1358,260,1900]" captionTargetId="figure-10@2.[196,1361,257,1916]" captionTargetPageId="2" captionText="Fig. 1. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6mm.A, habitus, lateral view; B, carapace and pereon, dorsal view; C, antenna 1; D, antenna 2; E, maxilliped 3; F, pereopod 1; G, habitus of subadult female, lateral view, 2.7mm. Scale bars:A, B, G=0.5 mm, C-F=0.2mm." pageId="1" pageNumber="73">Figs. 1A</figureCitation>
|
||||
<figureCitation id="131D2A69FFD7656655349211FD3CF94C" box="[593,688,1648,1673]" captionStart="Fig" captionStartId="2.[144,176,1949,1971]" captionTargetBox="[201,1358,260,1900]" captionTargetId="figure-10@2.[196,1361,257,1916]" captionTargetPageId="2" captionText="Fig. 1. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6mm.A, habitus, lateral view; B, carapace and pereon, dorsal view; C, antenna 1; D, antenna 2; E, maxilliped 3; F, pereopod 1; G, habitus of subadult female, lateral view, 2.7mm. Scale bars:A, B, G=0.5 mm, C-F=0.2mm." figureDoi="http://doi.org/10.5281/zenodo.13140479" httpUri="https://zenodo.org/record/13140479/files/figure.png" pageId="1" pageNumber="73">Figs. 1A</figureCitation>
|
||||
,
|
||||
<figureCitation id="131D2A69FFD7656655D89210FD56F94C" box="[701,730,1649,1673]" captionStart="Fig" captionStartId="3.[174,207,1558,1580]" captionTargetBox="[233,1374,262,1520]" captionTargetId="figure-210@3.[232,1375,257,1525]" captionTargetPageId="3" captionText="Fig. 2. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6 mm.A, pereopod 2; B, pereopod 3; C, pereopod 4; D, pereopod 5; E, pleopod 1; F, uropods and last pleonite. Scale bars:A-C, F=0.2 mm, D, E=0.1 mm." pageId="1" pageNumber="73">2F</figureCitation>
|
||||
<figureCitation id="131D2A69FFD7656655D89210FD56F94C" box="[701,730,1649,1673]" captionStart="Fig" captionStartId="3.[174,207,1558,1580]" captionTargetBox="[233,1374,262,1520]" captionTargetId="figure-210@3.[232,1375,257,1525]" captionTargetPageId="3" captionText="Fig. 2. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6 mm.A, pereopod 2; B, pereopod 3; C, pereopod 4; D, pereopod 5; E, pleopod 1; F, uropods and last pleonite. Scale bars:A-C, F=0.2 mm, D, E=0.1 mm." figureDoi="http://doi.org/10.5281/zenodo.13140481" httpUri="https://zenodo.org/record/13140481/files/figure.png" pageId="1" pageNumber="73">2F</figureCitation>
|
||||
) 0.6 times as long as carapace and pereon together, with 2 pairs of pleopods; pleonite 5 longest, 0.7 times as long as pleonites 3 and 4 together; pleonite 6 0.5 times as long as pleonite 5, with 3 pairs of simple setae near distal margin. Antenna 1 (
|
||||
<figureCitation id="131D2A69FFD7656656269373FE14F8EF" box="[323,408,1810,1834]" captionStart="Fig" captionStartId="2.[144,176,1949,1971]" captionTargetBox="[201,1358,260,1900]" captionTargetId="figure-10@2.[196,1361,257,1916]" captionTargetPageId="2" captionText="Fig. 1. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6mm.A, habitus, lateral view; B, carapace and pereon, dorsal view; C, antenna 1; D, antenna 2; E, maxilliped 3; F, pereopod 1; G, habitus of subadult female, lateral view, 2.7mm. Scale bars:A, B, G=0.5 mm, C-F=0.2mm." pageId="1" pageNumber="73">Fig. 1C</figureCitation>
|
||||
<figureCitation id="131D2A69FFD7656656269373FE14F8EF" box="[323,408,1810,1834]" captionStart="Fig" captionStartId="2.[144,176,1949,1971]" captionTargetBox="[201,1358,260,1900]" captionTargetId="figure-10@2.[196,1361,257,1916]" captionTargetPageId="2" captionText="Fig. 1. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6mm.A, habitus, lateral view; B, carapace and pereon, dorsal view; C, antenna 1; D, antenna 2; E, maxilliped 3; F, pereopod 1; G, habitus of subadult female, lateral view, 2.7mm. Scale bars:A, B, G=0.5 mm, C-F=0.2mm." figureDoi="http://doi.org/10.5281/zenodo.13140479" httpUri="https://zenodo.org/record/13140479/files/figure.png" pageId="1" pageNumber="73">Fig. 1C</figureCitation>
|
||||
), peduncle 3-articulated; article 1 subequal in length to remaining articles combined, with 1 short plumose and 6 plumose setae; article 2 0.5 times as long as article 1, with 2 simple setae bearing a bundle of hairs laterally, 10 simple setae bearing a bundle of hairs distally; article 3 subequal in length to article 2, with 5 simple setae bearing a bundle of hairs on medial corner. Main flagellum 3-articulated, subequal in length to article 3 of peduncle; article 1 longest, with 1 simple seta bearing a bundle of hairs distally; article 2 0.4 times as long as article 1, with 1 aesthetasc and 2 simple setae bearing a bundle of hairs distally; article 3 small, with 1 aesthetasc and 2 simple setae bearing a bundle of hairs distally. Accessory flagellum not articulated, with 5 simple setae bearing a bundle of hairs distally.
|
||||
</paragraph>
|
||||
<paragraph id="8B9936ECFFD76566543B9649FB18FD65" blockId="1.[839,1445,261,1995]" pageId="1" pageNumber="73">
|
||||
Antenna 2 (
|
||||
<figureCitation id="131D2A69FFD7656654BC9646FBA2FD85" box="[985,1070,551,576]" captionStart="Fig" captionStartId="2.[144,176,1949,1971]" captionTargetBox="[201,1358,260,1900]" captionTargetId="figure-10@2.[196,1361,257,1916]" captionTargetPageId="2" captionText="Fig. 1. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6mm.A, habitus, lateral view; B, carapace and pereon, dorsal view; C, antenna 1; D, antenna 2; E, maxilliped 3; F, pereopod 1; G, habitus of subadult female, lateral view, 2.7mm. Scale bars:A, B, G=0.5 mm, C-F=0.2mm." pageId="1" pageNumber="73">Fig. 1D</figureCitation>
|
||||
<figureCitation id="131D2A69FFD7656654BC9646FBA2FD85" box="[985,1070,551,576]" captionStart="Fig" captionStartId="2.[144,176,1949,1971]" captionTargetBox="[201,1358,260,1900]" captionTargetId="figure-10@2.[196,1361,257,1916]" captionTargetPageId="2" captionText="Fig. 1. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6mm.A, habitus, lateral view; B, carapace and pereon, dorsal view; C, antenna 1; D, antenna 2; E, maxilliped 3; F, pereopod 1; G, habitus of subadult female, lateral view, 2.7mm. Scale bars:A, B, G=0.5 mm, C-F=0.2mm." figureDoi="http://doi.org/10.5281/zenodo.13140479" httpUri="https://zenodo.org/record/13140479/files/figure.png" pageId="1" pageNumber="73">Fig. 1D</figureCitation>
|
||||
), peduncle composed of 4 articles; article 2 with 2 plumose setae anterior margin; article 3 with 1 plumose seta anterior margin; article 4 without seta; flagellum underdeveloped.
|
||||
</paragraph>
|
||||
<paragraph id="8B9936ECFFD76566543B96C9FC3BFBC6" blockId="1.[839,1445,261,1995]" pageId="1" pageNumber="73">
|
||||
Maxilliped 3 (
|
||||
<figureCitation id="131D2A69FFD76566549D96C9FBC7FD04" box="[1016,1099,680,705]" captionStart="Fig" captionStartId="2.[144,176,1949,1971]" captionTargetBox="[201,1358,260,1900]" captionTargetId="figure-10@2.[196,1361,257,1916]" captionTargetPageId="2" captionText="Fig. 1. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6mm.A, habitus, lateral view; B, carapace and pereon, dorsal view; C, antenna 1; D, antenna 2; E, maxilliped 3; F, pereopod 1; G, habitus of subadult female, lateral view, 2.7mm. Scale bars:A, B, G=0.5 mm, C-F=0.2mm." pageId="1" pageNumber="73">Fig. 1E</figureCitation>
|
||||
<figureCitation id="131D2A69FFD76566549D96C9FBC7FD04" box="[1016,1099,680,705]" captionStart="Fig" captionStartId="2.[144,176,1949,1971]" captionTargetBox="[201,1358,260,1900]" captionTargetId="figure-10@2.[196,1361,257,1916]" captionTargetPageId="2" captionText="Fig. 1. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6mm.A, habitus, lateral view; B, carapace and pereon, dorsal view; C, antenna 1; D, antenna 2; E, maxilliped 3; F, pereopod 1; G, habitus of subadult female, lateral view, 2.7mm. Scale bars:A, B, G=0.5 mm, C-F=0.2mm." figureDoi="http://doi.org/10.5281/zenodo.13140479" httpUri="https://zenodo.org/record/13140479/files/figure.png" pageId="1" pageNumber="73">Fig. 1E</figureCitation>
|
||||
), basis 1.2 times as long as remaining articles combined, with numerus hair-like and 4 plumose setae medially, 4 plumose setae on lateral face, 1 plumose and 3 long plumose setae on lateral conner; ischium short, unarmed; merus 2.6 times as long as ischium, with 2 plumose setae medially, 1 long plumose seta laterodistally; carpus 1.2 times as long as merus, with 3 plumose setae medially; propodus 0.8 times as long as carpus, unarmed; dactylus 0.9 times as long as propodus, with 4 short simple setae on lateral face, 5 simple setae terminally.
|
||||
</paragraph>
|
||||
<paragraph id="8B9936ECFFD76566543B906AFA94F9ED" blockId="1.[839,1445,261,1995]" pageId="1" pageNumber="73">
|
||||
Pereopod 1 (
|
||||
<figureCitation id="131D2A69FFD765665485906AFBA2FBE1" box="[992,1070,1035,1060]" captionStart="Fig" captionStartId="2.[144,176,1949,1971]" captionTargetBox="[201,1358,260,1900]" captionTargetId="figure-10@2.[196,1361,257,1916]" captionTargetPageId="2" captionText="Fig. 1. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6mm.A, habitus, lateral view; B, carapace and pereon, dorsal view; C, antenna 1; D, antenna 2; E, maxilliped 3; F, pereopod 1; G, habitus of subadult female, lateral view, 2.7mm. Scale bars:A, B, G=0.5 mm, C-F=0.2mm." pageId="1" pageNumber="73">Fig. 1F</figureCitation>
|
||||
<figureCitation id="131D2A69FFD765665485906AFBA2FBE1" box="[992,1070,1035,1060]" captionStart="Fig" captionStartId="2.[144,176,1949,1971]" captionTargetBox="[201,1358,260,1900]" captionTargetId="figure-10@2.[196,1361,257,1916]" captionTargetPageId="2" captionText="Fig. 1. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6mm.A, habitus, lateral view; B, carapace and pereon, dorsal view; C, antenna 1; D, antenna 2; E, maxilliped 3; F, pereopod 1; G, habitus of subadult female, lateral view, 2.7mm. Scale bars:A, B, G=0.5 mm, C-F=0.2mm." figureDoi="http://doi.org/10.5281/zenodo.13140479" httpUri="https://zenodo.org/record/13140479/files/figure.png" pageId="1" pageNumber="73">Fig. 1F</figureCitation>
|
||||
), basis 0.9 times as long as remaining articles combined, with 5 plumose setae medially, 4 plumose setae on lateral face, 1 plumose seta and 3 simple setae bearing a bundle of hairs distally; ischium very short, with 1 plumose seta medially; merus 2.9 times as long as ischium, with 1 short simple and 1 plumose setae medially, 2 short simple and 3 long plumose setae laterally; carpus 1.4 times as long as propodus, with 2 short simple setae, 1 complex pedunculate seta, and 4 simple setae bearing a bundle of hairs medially, 4 short simple and 4 long plumose setae laterally, 2 short simple and 3 long plumose setae laterodistally; propodus 0.8 times as long as carpus, with 4 short simple setae and 1 simple seta bearing a bundle of hairs medially, 4 short simple and 3 long plumose setae laterally; dactylus 0.8 times as long as propodus, with 2 short simple and 1 simple setae laterally, 1 short simple and 3 simple setae terminally.
|
||||
</paragraph>
|
||||
<paragraph id="8B9936ECFFD76564543B9251FED4F883" blockId="1.[839,1445,261,1995]" lastBlockId="3.[174,779,1677,1991]" lastPageId="3" lastPageNumber="75" pageId="1" pageNumber="73">
|
||||
Pereopod 2 (
|
||||
<figureCitation id="131D2A69FFD7656654859251FBBFF98D" box="[992,1075,1584,1608]" captionStart="Fig" captionStartId="3.[174,207,1558,1580]" captionTargetBox="[233,1374,262,1520]" captionTargetId="figure-210@3.[232,1375,257,1525]" captionTargetPageId="3" captionText="Fig. 2. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6 mm.A, pereopod 2; B, pereopod 3; C, pereopod 4; D, pereopod 5; E, pleopod 1; F, uropods and last pleonite. Scale bars:A-C, F=0.2 mm, D, E=0.1 mm." pageId="1" pageNumber="73">Fig. 2A</figureCitation>
|
||||
<figureCitation id="131D2A69FFD7656654859251FBBFF98D" box="[992,1075,1584,1608]" captionStart="Fig" captionStartId="3.[174,207,1558,1580]" captionTargetBox="[233,1374,262,1520]" captionTargetId="figure-210@3.[232,1375,257,1525]" captionTargetPageId="3" captionText="Fig. 2. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6 mm.A, pereopod 2; B, pereopod 3; C, pereopod 4; D, pereopod 5; E, pleopod 1; F, uropods and last pleonite. Scale bars:A-C, F=0.2 mm, D, E=0.1 mm." figureDoi="http://doi.org/10.5281/zenodo.13140481" httpUri="https://zenodo.org/record/13140481/files/figure.png" pageId="1" pageNumber="73">Fig. 2A</figureCitation>
|
||||
), basis 1.3 times as long as remaining articles combined, with 12 plumose setae and 3 simple setae bearing a bundle of hairs medially, 1 plumose seta on lateral face, 1 short simple and 1 plumose setae laterally; ischium very short, with 1 long plumose seta mediodistally; merus 7.3 times as long as ischium, with 1 simple seta bearing a bundle of hairs mediodistally, 3 simple setae bearing a bundle of hairs laterally, 1 plumose seta distally; carpus 1.4 times as long as merus, with 2 simple setae bearing a bundle of hairs medially, 2 simple setae bearing a bundle of hairs laterally, 1 plumose seta and 2 simple setae bearing a bundle of hairs distally; propodus 0.3 times as long as carpus, with 1 simple seta bearing a bundle of hairs laterodistally; dactylus 2.9 times as long as propodus, with 1 short simple and 1 plumose setae medially, 2 simple setae bearing a bundle of hairs on lateral face, 1 simple seta bearing a bundle of hairs laterally, 1 simple seta and 5 simple setae bearing a bundle of hairs terminally.
|
||||
</paragraph>
|
||||
<caption id="DF596664FFD4656557F593FCFA08F808" pageId="2" pageNumber="74" startId="2.[144,176,1949,1971]" targetBox="[201,1358,260,1900]" targetPageId="2" targetType="figure">
|
||||
<caption id="DF596664FFD4656557F593FCFA08F808" ID-DOI="http://doi.org/10.5281/zenodo.13140479" ID-Zenodo-Dep="13140479" httpUri="https://zenodo.org/record/13140479/files/figure.png" pageId="2" pageNumber="74" startId="2.[144,176,1949,1971]" targetBox="[201,1358,260,1900]" targetPageId="2" targetType="figure">
|
||||
<paragraph id="8B9936ECFFD4656557F593FCFA08F808" blockId="2.[144,1413,1949,1997]" pageId="2" pageNumber="74">
|
||||
<emphasis id="B952EAFEFFD4656557F593FCFF45F877" bold="true" box="[144,201,1949,1971]" pageId="2" pageNumber="74">Fig. 1.</emphasis>
|
||||
<taxonomicName id="4C264D6FFFD4656557AA93FCFD95F876" authority="Gamo, 1964" authorityName="Gamo" authorityYear="1964" box="[207,537,1949,1971]" class="Malacostraca" family="Leuconidae" genus="Pseudoleucon" kingdom="Animalia" order="Cumacea" pageId="2" pageNumber="74" phylum="Arthropoda" rank="species" species="japonicus">
|
||||
|
|
@ -167,7 +168,7 @@ F
|
|||
0.2 mm.
|
||||
</paragraph>
|
||||
</caption>
|
||||
<caption id="DF596664FFD5656457CB9277FC00F983" pageId="3" pageNumber="75" startId="3.[174,207,1558,1580]" targetBox="[233,1374,262,1520]" targetPageId="3" targetType="figure">
|
||||
<caption id="DF596664FFD5656457CB9277FC00F983" ID-DOI="http://doi.org/10.5281/zenodo.13140481" ID-Zenodo-Dep="13140481" httpUri="https://zenodo.org/record/13140481/files/figure.png" pageId="3" pageNumber="75" startId="3.[174,207,1558,1580]" targetBox="[233,1374,262,1520]" targetPageId="3" targetType="figure">
|
||||
<paragraph id="8B9936ECFFD5656457CB9277FC00F983" blockId="3.[174,1444,1558,1606]" pageId="3" pageNumber="75">
|
||||
<emphasis id="B952EAFEFFD5656457CB9277FF66F9EE" bold="true" box="[174,234,1558,1580]" pageId="3" pageNumber="75">Fig. 2.</emphasis>
|
||||
<taxonomicName id="4C264D6FFFD5656457959277FDC9F9E9" authority="Gamo, 1964" authorityName="Gamo" authorityYear="1964" box="[240,581,1558,1580]" class="Malacostraca" family="Leuconidae" genus="Pseudoleucon" kingdom="Animalia" order="Cumacea" pageId="3" pageNumber="75" phylum="Arthropoda" rank="species" species="japonicus">
|
||||
|
|
@ -185,32 +186,32 @@ C, F
|
|||
</caption>
|
||||
<paragraph id="8B9936ECFFD5656457A0932FFB03F862" blockId="3.[174,779,1677,1991]" lastBlockId="3.[839,1444,1677,1991]" pageId="3" pageNumber="75">
|
||||
Pereopod 3 (
|
||||
<figureCitation id="131D2A69FFD56564562D932FFE15F8A3" box="[328,409,1870,1894]" captionStart="Fig" captionStartId="3.[174,207,1558,1580]" captionTargetBox="[233,1374,262,1520]" captionTargetId="figure-210@3.[232,1375,257,1525]" captionTargetPageId="3" captionText="Fig. 2. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6 mm.A, pereopod 2; B, pereopod 3; C, pereopod 4; D, pereopod 5; E, pleopod 1; F, uropods and last pleonite. Scale bars:A-C, F=0.2 mm, D, E=0.1 mm." pageId="3" pageNumber="75">Fig. 2B</figureCitation>
|
||||
<figureCitation id="131D2A69FFD56564562D932FFE15F8A3" box="[328,409,1870,1894]" captionStart="Fig" captionStartId="3.[174,207,1558,1580]" captionTargetBox="[233,1374,262,1520]" captionTargetId="figure-210@3.[232,1375,257,1525]" captionTargetPageId="3" captionText="Fig. 2. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6 mm.A, pereopod 2; B, pereopod 3; C, pereopod 4; D, pereopod 5; E, pleopod 1; F, uropods and last pleonite. Scale bars:A-C, F=0.2 mm, D, E=0.1 mm." figureDoi="http://doi.org/10.5281/zenodo.13140481" httpUri="https://zenodo.org/record/13140481/files/figure.png" pageId="3" pageNumber="75">Fig. 2B</figureCitation>
|
||||
) basis 1.7 times as long as remaining articles combined, with 10 plumose setae medially, 2 plumose setae on lateral face, 1 plumose and 2 long plumose setae laterodistally, 1 plumose and 1 long plumose setae distally; ischium 0.1 times as long as basis, with 1 plumose seta medially, 1 plumose and 1 annulate setae distally; merus subequal in length to ischium, with 1 annulate seta distally; carpus 1.9 times as long as merus, with 1 simple seta bearing a bundle of hairs laterally, 1 short simple and 3 annulate setae distally; propodus 0.6 times as long as carpus, with 1 annulate seta laterodistally; dactylus 0.3 times as long as propodus, with 2 short simple and 1 annulate setae terminally.
|
||||
</paragraph>
|
||||
<paragraph id="8B9936ECFFD56563543B93CEFDD3FDFA" blockId="3.[839,1444,1677,1991]" lastBlockId="4.[144,749,261,1995]" lastPageId="4" lastPageNumber="76" pageId="3" pageNumber="75">
|
||||
Pereopod 4 (
|
||||
<figureCitation id="131D2A69FFD56564548593CEFBBEF802" box="[992,1074,1967,1991]" captionStart="Fig" captionStartId="3.[174,207,1558,1580]" captionTargetBox="[233,1374,262,1520]" captionTargetId="figure-210@3.[232,1375,257,1525]" captionTargetPageId="3" captionText="Fig. 2. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6 mm.A, pereopod 2; B, pereopod 3; C, pereopod 4; D, pereopod 5; E, pleopod 1; F, uropods and last pleonite. Scale bars:A-C, F=0.2 mm, D, E=0.1 mm." pageId="3" pageNumber="75">Fig. 2C</figureCitation>
|
||||
<figureCitation id="131D2A69FFD56564548593CEFBBEF802" box="[992,1074,1967,1991]" captionStart="Fig" captionStartId="3.[174,207,1558,1580]" captionTargetBox="[233,1374,262,1520]" captionTargetId="figure-210@3.[232,1375,257,1525]" captionTargetPageId="3" captionText="Fig. 2. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6 mm.A, pereopod 2; B, pereopod 3; C, pereopod 4; D, pereopod 5; E, pleopod 1; F, uropods and last pleonite. Scale bars:A-C, F=0.2 mm, D, E=0.1 mm." figureDoi="http://doi.org/10.5281/zenodo.13140481" httpUri="https://zenodo.org/record/13140481/files/figure.png" pageId="3" pageNumber="75">Fig. 2C</figureCitation>
|
||||
), basis 1.7 times as long as remaining articles combined, with 1 plumose seta medially, 3 plumose setae on lateral face, 1 plumose seta laterally, 1 plumose and 2 long plumose setae distally; ischium 0.1 times as long as basis, with 4 annulate setae distally; merus 1.6 times as long as ischium, with 1 plumose and 1 annulate setae distally; carpus 1.7 times as long as merus, with 1 annulate seta laterally, 1 short simple and 3 annulate setae distally; propodus 0.5 times as long as carpus, unarmed; dactylus 0.2 times as long as propodus, with 2 short simple and 1 annulate setae terminally.
|
||||
</paragraph>
|
||||
<paragraph id="8B9936ECFFD2656357C39629FE43FC67" blockId="4.[144,749,261,1995]" pageId="4" pageNumber="76">
|
||||
Pereopod 5 (
|
||||
<figureCitation id="131D2A69FFD26563564D9629FEF0FDA5" box="[296,380,584,608]" captionStart="Fig" captionStartId="3.[174,207,1558,1580]" captionTargetBox="[233,1374,262,1520]" captionTargetId="figure-210@3.[232,1375,257,1525]" captionTargetPageId="3" captionText="Fig. 2. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6 mm.A, pereopod 2; B, pereopod 3; C, pereopod 4; D, pereopod 5; E, pleopod 1; F, uropods and last pleonite. Scale bars:A-C, F=0.2 mm, D, E=0.1 mm." pageId="4" pageNumber="76">Fig. 2D</figureCitation>
|
||||
<figureCitation id="131D2A69FFD26563564D9629FEF0FDA5" box="[296,380,584,608]" captionStart="Fig" captionStartId="3.[174,207,1558,1580]" captionTargetBox="[233,1374,262,1520]" captionTargetId="figure-210@3.[232,1375,257,1525]" captionTargetPageId="3" captionText="Fig. 2. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6 mm.A, pereopod 2; B, pereopod 3; C, pereopod 4; D, pereopod 5; E, pleopod 1; F, uropods and last pleonite. Scale bars:A-C, F=0.2 mm, D, E=0.1 mm." figureDoi="http://doi.org/10.5281/zenodo.13140481" httpUri="https://zenodo.org/record/13140481/files/figure.png" pageId="4" pageNumber="76">Fig. 2D</figureCitation>
|
||||
), basis 0.8 times as long as remaining articles combined, with 3 plumose setae mediodistally, 2 plumose setae and 1 simple seta bearing a bundle of hairs laterally; ischium 0.3 times as long as basis, with 3 annulate setae medially; merus 1.9 times as long as ischium, with 1 plumose seta laterally, 1 annulate seta distally; carpus subequal in length to merus, with 1 plumose seta laterally, 4 annulate setae distally; propodus 0.5 times as long as carpus, with 1 annulate seta laterodistally; dactylus 0.2 times as long as propodus, with 1 short simple seta medially, 1 annulate seta terminally.
|
||||
</paragraph>
|
||||
<paragraph id="8B9936ECFFD2656357C397CAFD60FBE6" blockId="4.[144,749,261,1995]" pageId="4" pageNumber="76">
|
||||
Pleopod 1 (
|
||||
<figureCitation id="131D2A69FFD26563567897CAFEE2FC06" box="[285,366,939,963]" captionStart="Fig" captionStartId="3.[174,207,1558,1580]" captionTargetBox="[233,1374,262,1520]" captionTargetId="figure-210@3.[232,1375,257,1525]" captionTargetPageId="3" captionText="Fig. 2. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6 mm.A, pereopod 2; B, pereopod 3; C, pereopod 4; D, pereopod 5; E, pleopod 1; F, uropods and last pleonite. Scale bars:A-C, F=0.2 mm, D, E=0.1 mm." pageId="4" pageNumber="76">Fig. 2E</figureCitation>
|
||||
<figureCitation id="131D2A69FFD26563567897CAFEE2FC06" box="[285,366,939,963]" captionStart="Fig" captionStartId="3.[174,207,1558,1580]" captionTargetBox="[233,1374,262,1520]" captionTargetId="figure-210@3.[232,1375,257,1525]" captionTargetPageId="3" captionText="Fig. 2. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6 mm.A, pereopod 2; B, pereopod 3; C, pereopod 4; D, pereopod 5; E, pleopod 1; F, uropods and last pleonite. Scale bars:A-C, F=0.2 mm, D, E=0.1 mm." figureDoi="http://doi.org/10.5281/zenodo.13140481" httpUri="https://zenodo.org/record/13140481/files/figure.png" pageId="4" pageNumber="76">Fig. 2E</figureCitation>
|
||||
), basis 2.5 times as long as inner ramus, unarmed; outer ramus 2-articulated, with 4 simple setae terminally; inner ramus unarticulated, with 2 complex pedunculate setae laterally, 4 simple setae terminally.
|
||||
</paragraph>
|
||||
<paragraph id="8B9936ECFFD2656357C3904DFE4BF9C2" blockId="4.[144,749,261,1995]" pageId="4" pageNumber="76">
|
||||
Uropod (
|
||||
<figureCitation id="131D2A69FFD265635663904DFED5FB81" box="[262,345,1068,1092]" captionStart="Fig" captionStartId="3.[174,207,1558,1580]" captionTargetBox="[233,1374,262,1520]" captionTargetId="figure-210@3.[232,1375,257,1525]" captionTargetPageId="3" captionText="Fig. 2. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6 mm.A, pereopod 2; B, pereopod 3; C, pereopod 4; D, pereopod 5; E, pleopod 1; F, uropods and last pleonite. Scale bars:A-C, F=0.2 mm, D, E=0.1 mm." pageId="4" pageNumber="76">Fig. 2F</figureCitation>
|
||||
<figureCitation id="131D2A69FFD265635663904DFED5FB81" box="[262,345,1068,1092]" captionStart="Fig" captionStartId="3.[174,207,1558,1580]" captionTargetBox="[233,1374,262,1520]" captionTargetId="figure-210@3.[232,1375,257,1525]" captionTargetPageId="3" captionText="Fig. 2. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6 mm.A, pereopod 2; B, pereopod 3; C, pereopod 4; D, pereopod 5; E, pleopod 1; F, uropods and last pleonite. Scale bars:A-C, F=0.2 mm, D, E=0.1 mm." figureDoi="http://doi.org/10.5281/zenodo.13140481" httpUri="https://zenodo.org/record/13140481/files/figure.png" pageId="4" pageNumber="76">Fig. 2F</figureCitation>
|
||||
), peduncle subequal in length to last pleonite, with 1 simple seta and 7 simple setae bearing a bundle of hairs medially, 1 short simple seta laterally. Uropod endopod 2-articulated, 1.4 times as long as peduncle, 0.7 times as long as exopod; article 1 with 4 plumose setae and 1 simple seta with single subterminal setule medially, 1 plumose seta and 1 simple seta bearing a bundle of hairs mediodistally, 1 short simple seta laterally; article 2 0.4 times as long as article 1, with 1 short simple seta and 1 simple seta with single subterminal setule mediodistally, 1 short simple seta laterodistally, 1 long plumose and 1 stout simple setae terminally. Uropod exopod 2-articulat- ed, 1.9 times as long as peduncle; article 1 unarmed, article 2 with 3 plumose setae, 1 broken seta, and 21 simple seta bearing a bundle of hairs.
|
||||
</paragraph>
|
||||
<paragraph id="8B9936ECFFD2656357C39271FF67F8CC" blockId="4.[144,749,261,1995]" pageId="4" pageNumber="76">
|
||||
Subadult female (DKUCUM 202001). Body length (
|
||||
<figureCitation id="131D2A69FFD2656355A69271FF3CF98D" captionStart="Fig" captionStartId="2.[144,176,1949,1971]" captionTargetBox="[201,1358,260,1900]" captionTargetId="figure-10@2.[196,1361,257,1916]" captionTargetPageId="2" captionText="Fig. 1. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6mm.A, habitus, lateral view; B, carapace and pereon, dorsal view; C, antenna 1; D, antenna 2; E, maxilliped 3; F, pereopod 1; G, habitus of subadult female, lateral view, 2.7mm. Scale bars:A, B, G=0.5 mm, C-F=0.2mm." pageId="4" pageNumber="76">Fig. 1G</figureCitation>
|
||||
<figureCitation id="131D2A69FFD2656355A69271FF3CF98D" captionStart="Fig" captionStartId="2.[144,176,1949,1971]" captionTargetBox="[201,1358,260,1900]" captionTargetId="figure-10@2.[196,1361,257,1916]" captionTargetPageId="2" captionText="Fig. 1. Pseudoleucon japonicus Gamô, 1964, subadult male, 2.6mm.A, habitus, lateral view; B, carapace and pereon, dorsal view; C, antenna 1; D, antenna 2; E, maxilliped 3; F, pereopod 1; G, habitus of subadult female, lateral view, 2.7mm. Scale bars:A, B, G=0.5 mm, C-F=0.2mm." figureDoi="http://doi.org/10.5281/zenodo.13140479" httpUri="https://zenodo.org/record/13140479/files/figure.png" pageId="4" pageNumber="76">Fig. 1G</figureCitation>
|
||||
)
|
||||
<quantity id="4CDE9B09FFD2656357A59251FE9DF982" box="[192,273,1584,1608]" metricMagnitude="-3" metricUnit="m" metricValue="2.7" pageId="4" pageNumber="76" unit="mm" value="2.7">2.7 mm</quantity>
|
||||
, excluding uropods. Carapace slightly longer than 1/3 of body length, 1.5 times as long as its depth; shape and sculpture of carapace similar to subadult male. Pereon 0.7 times as long as carapace, shorter than 1/3 of body length; pereopods 4 and 5 without exopod. Pleon 0.6 times as long as carapace and pereon together, without pleopod.
|
||||
|
|
|
|||
172
data/5E/19/87/5E1987B8770055072B8FA301248FF8C4.xml
Normal file
172
data/5E/19/87/5E1987B8770055072B8FA301248FF8C4.xml
Normal file
|
|
@ -0,0 +1,172 @@
|
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<mods:title id="347322A6E79F985EAA7ECC164C9CF27F">Identification of 12 radiation-resistant bacterial species in the phylum Proteobacteria new to Korea</mods:title>
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<mods:namePart id="8875A0AE39C2DA9C3285955B3B0D64AF">Maeng, Soohyun</mods:namePart>
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<mods:namePart id="5E83A99CAB448B5EFA63F783D9763906">Park, Yuna</mods:namePart>
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<mods:affiliation id="9BE81CCC2C0D49B8503B7B8A3CFD0210">Environmental Research Complex, National Institute of Biological Resources, Incheon 22689, Republic of Korea</mods:affiliation>
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<treatment id="5E1987B8770055072B8FA301248FF8C4" ID-DOI="http://doi.org/10.5281/zenodo.13140521" ID-Zenodo-Dep="13140521" LSID="urn:lsid:plazi:treatment:5E1987B8770055072B8FA301248FF8C4" httpUri="http://treatment.plazi.org/id/5E1987B8770055072B8FA301248FF8C4" lastPageId="8" lastPageNumber="93" pageId="7" pageNumber="92">
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<paragraph id="D60F36AE770055082B8FA3012512F9C5" blockId="7.[144,609,1562,1586]" box="[144,609,1562,1586]" pageId="7" pageNumber="92">
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<heading id="8D4781C2770055082B8FA3012512F9C5" box="[144,609,1562,1586]" fontSize="10" level="2" pageId="7" pageNumber="92" reason="5">
|
||||
<emphasis id="E4C4EABC770055082B8FA3012512F9C5" bold="true" box="[144,609,1562,1586]" pageId="7" pageNumber="92">
|
||||
Description of
|
||||
<taxonomicName id="11B04D2D770055082A28A301254BF9C5" authority="BT" authorityName="BT" box="[311,568,1562,1586]" class="Betaproteobacteria" family="Comamonadaceae" genus="Variovorax" kingdom="Bacteria" order="Burkholderiales" pageId="7" pageNumber="92" phylum="Proteobacteria" rank="species" species="gossypii">
|
||||
<emphasis id="E4C4EABC770055082A28A301257DF9C5" bold="true" box="[311,526,1562,1586]" italics="true" pageId="7" pageNumber="92">Variovorax gossypii</emphasis>
|
||||
BT
|
||||
</taxonomicName>
|
||||
370
|
||||
</emphasis>
|
||||
</heading>
|
||||
</paragraph>
|
||||
<paragraph id="D60F36AE770055072BB9A3402380F924" blockId="7.[144,749,1627,1974]" lastBlockId="8.[839,1444,1465,1843]" lastPageId="8" lastPageNumber="93" pageId="7" pageNumber="92">
|
||||
Cells are Gram-stain-negative, flagellated, and rod-shaped. Colonies are white-colored after 3 days of incubation on R2A at 25°C. In the BIOLOG GEN III, positive for sodium bromate, pH 6, pH 5,
|
||||
<emphasis id="E4C4EABC770055082AF4A3A7268EF924" box="[491,509,1724,1747]" italics="true" pageId="7" pageNumber="92">N</emphasis>
|
||||
-acetyl-D- glucosamine,
|
||||
<emphasis id="E4C4EABC770055082B8FA3C627D1F903" box="[144,162,1757,1780]" italics="true" pageId="7" pageNumber="92">N</emphasis>
|
||||
-
|
||||
<subScript id="4A3434EB770055082BB7A3C72676F903" attach="left" box="[168,261,1756,1780]" fontSize="7" pageId="7" pageNumber="92">acetyl-D-</subScript>
|
||||
galactosamin, 1% NaCl,
|
||||
<emphasis id="E4C4EABC77005508290DA3C62551F903" box="[530,546,1757,1780]" italics="true" pageId="7" pageNumber="92">α</emphasis>
|
||||
-
|
||||
<subScript id="4A3434EB770055082934A3F9254CF903" attach="none" box="[555,575,1756,1780]" fontSize="7" pageId="7" pageNumber="92">D-</subScript>
|
||||
glucose,
|
||||
<subScript id="4A3434EB7700550829BFA3F925C6F904" attach="right" box="[672,693,1756,1779]" fontSize="7" pageId="7" pageNumber="92">D-</subScript>
|
||||
mannose, D- galactose, L- fucose, L- rhamnose, 1% sodium lactate, D- sorbitol, D- mannitol, D- arabitol, glycerol, troleandomycin, rifamycin SV, glyctl-L- proline, L- alanine, L- arginine, L- aspartic acid, L- glutamic acid, L- histidine, L- pyroglutamic acid, L- serine, lincomycin, D- galacturonic acid, L- galactonic acid lactone, D- gluconic acid, D- glucuronic acid, mucic acid, quinic acid, D- saccharic acid, vancomycin, tetrazolium violet, tetrazolium blue,
|
||||
<emphasis id="E4C4EABC770055082E53A320222AF9A5" box="[1356,1369,1595,1618]" italics="true" pageId="7" pageNumber="92">p</emphasis>
|
||||
-hydroxy-pheylacetic acid, L- lactic acid, citric acid, D- malic acid, L- malic acid, bromo-succinic acid,
|
||||
<emphasis id="E4C4EABC770055082FCDA3672392F964" box="[1234,1249,1660,1683]" italics="true" pageId="7" pageNumber="92">γ</emphasis>
|
||||
-amino-butryric acid,
|
||||
<emphasis id="E4C4EABC77005508287BA3872400F943" box="[868,883,1692,1716]" italics="true" pageId="7" pageNumber="92">β</emphasis>
|
||||
-hydroxy-D, L- butyric acid, propionic acid, acetic acid, formic acid and aztreonam; weak positive for D- fructose,
|
||||
<subScript id="4A3434EB77005508287EA3F92406F903" attach="right" box="[865,885,1756,1780]" fontSize="7" pageId="7" pageNumber="92">D-</subScript>
|
||||
fucose, fusidic acid,
|
||||
<subScript id="4A3434EB770055082F4EA3F92316F903" attach="right" box="[1105,1125,1756,1780]" fontSize="7" pageId="7" pageNumber="92">D-</subScript>
|
||||
serine, myo-inositol,
|
||||
<subScript id="4A3434EB770055082E59A3F92229F903" attach="right" box="[1350,1370,1756,1780]" fontSize="7" pageId="7" pageNumber="92">D-</subScript>
|
||||
glucose-6-PO
|
||||
<subScript id="4A3434EB770055082885A21F24D0F8E2" attach="left" box="[922,931,1796,1813]" fontSize="7" pageId="7" pageNumber="92">4</subScript>
|
||||
, D- fructose-6-PO
|
||||
<subScript id="4A3434EB770055082F7DA21F2318F8E2" attach="right" box="[1122,1131,1796,1813]" fontSize="7" pageId="7" pageNumber="92">4</subScript>
|
||||
, guanidine HCl, niaproof 4, methyl pyruvate,
|
||||
<emphasis id="E4C4EABC770055082F19A2062365F8C3" box="[1030,1046,1821,1844]" italics="true" pageId="7" pageNumber="92">α</emphasis>
|
||||
-keto-glutaric acid, potassium tellurite, tween 40,
|
||||
<emphasis id="E4C4EABC7700550828FEA2262482F8A3" box="[993,1009,1853,1876]" italics="true" pageId="7" pageNumber="92">α</emphasis>
|
||||
-hydroxy-butyric acid and acetoacetic acid; but negative for dextrin, D- maltose, D- cellobiolose, gentiobiose, sucrose, D- turanose, stachyose, D- raffinose,
|
||||
<emphasis id="E4C4EABC770055082836A285244AF842" box="[809,825,1950,1973]" italics="true" pageId="7" pageNumber="92">α</emphasis>
|
||||
-D- lactose, D- melibiose,
|
||||
<emphasis id="E4C4EABC770055082F5AA2852327F841" box="[1093,1108,1950,1974]" italics="true" pageId="7" pageNumber="92">β</emphasis>
|
||||
-methyl-D- glucoside, D- salicin,
|
||||
<emphasis id="E4C4EABC770F55072BC1A0A22783FA27" box="[222,240,1465,1488]" italics="true" pageId="8" pageNumber="93">N</emphasis>
|
||||
-acetyl-
|
||||
<emphasis id="E4C4EABC770F55072A5DA0A22622FA26" box="[322,337,1465,1489]" italics="true" pageId="8" pageNumber="93">β</emphasis>
|
||||
-mannosamin,
|
||||
<emphasis id="E4C4EABC770F55072AEDA0A22577FA27" box="[498,516,1465,1488]" italics="true" pageId="8" pageNumber="93">N</emphasis>
|
||||
-acetyl neuraminic acid, 4% NaCl, 8% NaCl, 3-methyl-glucose, inosine,
|
||||
<subScript id="4A3434EB770F550729A9A0C425BAFA07" attach="right" box="[694,713,1497,1520]" fontSize="7" pageId="8" pageNumber="93">D-</subScript>
|
||||
aspartic acid, D- aerine, minocycline, gelatin, pectin, glucuronamide, D- lactic acid methyl ester, nalidixic acid, lithium chloride,
|
||||
<emphasis id="E4C4EABC770F55072A0FA3212653F9A6" box="[272,288,1594,1617]" italics="true" pageId="8" pageNumber="93">α</emphasis>
|
||||
-keto butyric acid, sodium butyrate and sodium bromate. In API 20NE test, positive for
|
||||
<emphasis id="E4C4EABC770F5507297FA341251CF985" box="[608,623,1626,1650]" italics="true" pageId="8" pageNumber="93">β</emphasis>
|
||||
-galactosidase; weak positive for esculin hydrolysis; but negative for reduction of nitrates (NO
|
||||
<subScript id="4A3434EB770F55072AB3A3B926C6F944" attach="right" box="[428,437,1698,1715]" fontSize="7" pageId="8" pageNumber="93">3</subScript>
|
||||
) to nitrite (NO
|
||||
<subScript id="4A3434EB770F55072945A3B92510F944" attach="left" box="[602,611,1698,1715]" fontSize="7" pageId="8" pageNumber="93">2</subScript>
|
||||
<superScript id="21C59BE6770F5507297CA383251EF952" attach="right" box="[611,621,1688,1701]" fontSize="7" pageId="8" pageNumber="93">-</superScript>
|
||||
), reduction of nitrates (NO
|
||||
<subScript id="4A3434EB770F55072A32A3D92646F924" attach="left" box="[301,309,1730,1747]" fontSize="7" pageId="8" pageNumber="93">3</subScript>
|
||||
) to nitrogen (N
|
||||
<subScript id="4A3434EB770F55072AC7A3D92693F924" attach="left" box="[472,480,1730,1747]" fontSize="7" pageId="8" pageNumber="93">2</subScript>
|
||||
), indole production on tryptophan, glucose fermentation, arginine dihydrolase, urease and gelatin hydrolysis. D- Mannitol, D- maltose, D- glucose, L- arabinose (weak), D- mannose (weak), potassium gluconate (weak), adipic acid (weak), malic acid (weak) were utilized whereas,
|
||||
<emphasis id="E4C4EABC770F55072AAEA24626B0F883" box="[433,451,1885,1908]" italics="true" pageId="8" pageNumber="93">N</emphasis>
|
||||
-acetyl-D- glucosamine, capric acid, trisodium citrate and phenylacetic acid were not utilized. In API 32GN test,
|
||||
<emphasis id="E4C4EABC770F55072AA4A28626BEF843" box="[443,461,1949,1972]" italics="true" pageId="8" pageNumber="93">N</emphasis>
|
||||
-acetyl-glucosamine, D- ribose, inositol, D- saccharose (sucrose), D- maltose, glycogen, D- mannitol, D- glucose, D- melibiose, L- arabinose, sodium acetate, lactic acid, L- alanine, salicin, trisodium citrate, potassium 2-ketogluconate and L- proline were utilized whereas, L- rhamnose, itaconic acid, suberic acid, sodium malonate, potassium 5-ketogluconate, 3-hydroxybenzoic acid, L- serine, D- fucose, D- sorbitol, propionic acid, capric acid, valeric acid, L- histidine, 3-hydroxybutyric acid and 4-hydroxybenzoic acid were not utilized.
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
<caption id="82CF6626770F55072BB1A03C2496FA85" ID-DOI="http://doi.org/10.5281/zenodo.13140543" ID-Zenodo-Dep="13140543" httpUri="https://zenodo.org/record/13140543/files/figure.png" pageId="8" pageNumber="93" startId="8.[174,207,1319,1341]" targetBox="[400,1208,259,1287]" targetPageId="8" targetType="figure">
|
||||
<paragraph id="D60F36AE770F55072BB1A03C2496FA85" blockId="8.[174,1444,1319,1394]" pageId="8" pageNumber="93">
|
||||
<emphasis id="E4C4EABC770F55072BB1A03C279FFACB" bold="true" box="[174,236,1319,1341]" pageId="8" pageNumber="93">Fig. 7.</emphasis>
|
||||
Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the species
|
||||
<taxonomicName id="11B04D2D770F5507293BA0592446FAA0" box="[548,821,1346,1367]" class="Gammaproteobacteria" family="Pseudomonadaceae" genus="Arthrobacter" kingdom="Bacteria" order="Pseudomonadales" pageId="8" pageNumber="93" phylum="Proteobacteria" rank="species" species="nitrophenolicus">
|
||||
<emphasis id="E4C4EABC770F5507293BA0592446FAA0" box="[548,821,1346,1367]" italics="true" pageId="8" pageNumber="93">Arthrobacter nitrophenolicus</emphasis>
|
||||
</taxonomicName>
|
||||
. Bootstrap values (>70%) are shown above nodes for the neighbor-joining methods. Bar: 0.01 and 0.02 substitutions per nucleotide position, respectively.
|
||||
</paragraph>
|
||||
</caption>
|
||||
<subSubSection id="9EAA6525770F55072841A3C0248FF8C4" pageId="8" pageNumber="93" type="description">
|
||||
<paragraph id="D60F36AE770F55072841A3C0248FF8C4" blockId="8.[839,1444,1465,1843]" pageId="8" pageNumber="93">
|
||||
Strain BT370 (
|
||||
<emphasis id="E4C4EABC770F55072F1BA3C0236BF904" bold="true" box="[1028,1048,1755,1779]" pageId="8" pageNumber="93">=</emphasis>
|
||||
NIBRBAC000503024) was isolated from a soil sample, Gyeongju City in
|
||||
<collectingRegion id="1474F84C770F55072FECA3E024DAF8C4" country="South Korea" name="Gyeongbuk" pageId="8" pageNumber="93">Gyeongsangbuk Province</collectingRegion>
|
||||
,
|
||||
<collectingCountry id="AEA7763E770F550728ACA207248BF8C4" box="[947,1016,1820,1843]" name="South Korea" pageId="8" pageNumber="93">Korea</collectingCountry>
|
||||
.
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
</treatment>
|
||||
</document>
|
||||
196
data/5E/19/87/5E1987B8770355092858A253248FF847.xml
Normal file
196
data/5E/19/87/5E1987B8770355092858A253248FF847.xml
Normal file
|
|
@ -0,0 +1,196 @@
|
|||
<document id="746ED52B4F19E44D9FE075125867D29E" ID-DOI="10.12651/JSR.2020.9.2.085" ID-ISSN="2713-8615" ID-Zenodo-Dep="13140525" IM.bibliography_approvedBy="felipe" IM.illustrations_approvedBy="felipe" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.taxonomicNames_approvedBy="felipe" IM.treatments_approvedBy="felipe" checkinTime="1722403497596" checkinUser="felipe" docAuthor="Han, Joo Hyun, Maeng, Soohyun, Park, Yuna, Lee, Sang Eun, Lee, Byoung-Hee & Kim, Ki-eun Lee and Myung Kyum" docDate="2020" docId="5E1987B8770355092858A253248FF847" docLanguage="en" docName="JSpeciesRes.9.2.85-104.pdf" docOrigin="Journal of Species Research 9 (2)" docStyle="DocumentStyle:4D398BFF45FF8CA9E08F546BB06AE372.2:JSpeciesRes.2012-.journal_article" docStyleId="4D398BFF45FF8CA9E08F546BB06AE372" docStyleName="JSpeciesRes.2012-.journal_article" docStyleVersion="2" docTitle="Paraburkholderia kirstenboschensis BT" docType="treatment" docVersion="2" lastPageNumber="91" masterDocId="A220FFC07707550F2B1FA51B2773FFF7" masterDocTitle="Identification of 12 radiation-resistant bacterial species in the phylum Proteobacteria new to Korea" masterLastPageNumber="104" masterPageNumber="85" pageNumber="89" updateTime="1722403955945" updateUser="ExternalLinkService" zenodo-license-document="CC-BY-4.0">
|
||||
<mods:mods id="685C162F72C408E9B7D253FAD1DDBCA1" xmlns:mods="http://www.loc.gov/mods/v3">
|
||||
<mods:titleInfo id="E84251C7487E9EB8B8DC7E18671D5025">
|
||||
<mods:title id="ACD151D2BA77C2492957F9ADE826E5D8">Identification of 12 radiation-resistant bacterial species in the phylum Proteobacteria new to Korea</mods:title>
|
||||
</mods:titleInfo>
|
||||
<mods:name id="C5DCA165833A9785CEB58FCC0E485BEC" type="personal">
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||||
<mods:role id="AFE15C01CD9F7957D6EF266AC142AF26">
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<mods:roleTerm id="194706617585DD0812C05770D09DA164">Author</mods:roleTerm>
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||||
</mods:role>
|
||||
<mods:namePart id="88798187BDCA632130D0761D99BA88F5">Han, Joo Hyun</mods:namePart>
|
||||
<mods:affiliation id="6422D3EFBA0A4CC0FE455336E167B550">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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||||
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|
||||
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||||
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||||
<mods:roleTerm id="53FD565D725C4639DA3AC4B355E88C76">Author</mods:roleTerm>
|
||||
</mods:role>
|
||||
<mods:namePart id="F64A459CA0FEA01B282F7E75EB9613B6">Maeng, Soohyun</mods:namePart>
|
||||
<mods:affiliation id="6B46F7310EE6EB2EDB0E3CEB0DA9D1C8">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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||||
</mods:name>
|
||||
<mods:name id="157BEC84925ACF33004C2FA653E5FE9B" type="personal">
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||||
</mods:role>
|
||||
<mods:namePart id="F3DB275A5138C0AE2158B61D5CD50DE6">Park, Yuna</mods:namePart>
|
||||
<mods:affiliation id="02A83A52E72AAB88A32C9972DF2BFA53">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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||||
</mods:name>
|
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<mods:roleTerm id="3A80D83CFBFE7CFD967A8CC7D77588C1">Author</mods:roleTerm>
|
||||
</mods:role>
|
||||
<mods:namePart id="340E86D45E7A53F4716B0B672843BA98">Lee, Sang Eun</mods:namePart>
|
||||
<mods:affiliation id="D0D1BD4874D98967FA4CF7F4887F92A0">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
|
||||
</mods:name>
|
||||
<mods:name id="92FD92A1925E831BDABC3A57FA017764" type="personal">
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|
||||
</mods:role>
|
||||
<mods:namePart id="95A96A01E9483706E5D9E083B76B375E">Lee, Byoung-Hee</mods:namePart>
|
||||
<mods:affiliation id="EACB95D75972C86137C3292CD8CC1C46">Environmental Research Complex, National Institute of Biological Resources, Incheon 22689, Republic of Korea</mods:affiliation>
|
||||
</mods:name>
|
||||
<mods:name id="5910709280E68793E60DCD7114639A58" type="personal">
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|
||||
</mods:role>
|
||||
<mods:namePart id="7A38F790776DF886617086520B38B3E3">Kim, Ki-eun Lee and Myung Kyum</mods:namePart>
|
||||
</mods:name>
|
||||
<mods:typeOfResource id="034919586B906F01ACC2D1D28EB1406B">text</mods:typeOfResource>
|
||||
<mods:relatedItem id="A8E159246B2D3D77F6B4F83DAF4F7AD0" type="host">
|
||||
<mods:titleInfo id="F2FE86A29047755242B8E7DA99108E91">
|
||||
<mods:title id="51EBCC110E229219C0BA655FB78967C2">Journal of Species Research</mods:title>
|
||||
</mods:titleInfo>
|
||||
<mods:part id="D6CDB14EC106717D87B7BD7ED5FCF122">
|
||||
<mods:date id="3A2309BFC710E265A35668B05FDE36ED">2020</mods:date>
|
||||
<mods:detail id="E964C5B8BE776CBA6CB83A8D825C31B8" type="volume">
|
||||
<mods:number id="24F94B47AFE1B0DF3AE9D53BBD9E4DFE">9</mods:number>
|
||||
</mods:detail>
|
||||
<mods:detail id="5032CD961DAFE31ED3ACE0BACAC7FE26" type="issue">
|
||||
<mods:number id="7508153F2B60747AA98FF51399F1C62E">2</mods:number>
|
||||
</mods:detail>
|
||||
<mods:extent id="A5B54F565273EFA3E0813DC891B6394D" unit="page">
|
||||
<mods:start id="5677C3F0A4596E09464C9BEE27F45320">85</mods:start>
|
||||
<mods:end id="021AC8752B72CE42E8B973E261DA6F4A">104</mods:end>
|
||||
</mods:extent>
|
||||
</mods:part>
|
||||
</mods:relatedItem>
|
||||
<mods:classification id="6C0CDD09971F0245B742627BC783E395">journal article</mods:classification>
|
||||
<mods:identifier id="9B17A7CA015C6129AA81CD29DD92E9F4" type="DOI">10.12651/JSR.2020.9.2.085</mods:identifier>
|
||||
<mods:identifier id="380E6BC14677E56E3FE69F6A45A318F9" type="ISSN">2713-8615</mods:identifier>
|
||||
<mods:identifier id="5408ACBE19D8A600B4448F783C8622AC" type="Zenodo-Dep">13140525</mods:identifier>
|
||||
</mods:mods>
|
||||
<treatment id="5E1987B8770355092858A253248FF847" LSID="urn:lsid:plazi:treatment:5E1987B8770355092858A253248FF847" httpUri="http://treatment.plazi.org/id/5E1987B8770355092858A253248FF847" lastPageId="6" lastPageNumber="91" pageId="4" pageNumber="89">
|
||||
<subSubSection id="9EAA6525770355092858A2532341F8B8" lastPageId="6" lastPageNumber="91" pageId="4" pageNumber="89" type="nomenclature">
|
||||
<paragraph id="D60F36AE7703550B2858A25324E1F877" blockId="4.[839,1404,1864,1920]" pageId="4" pageNumber="89">
|
||||
<heading id="8D4781C27703550B2858A25324E1F877" fontSize="10" level="2" pageId="4" pageNumber="89" reason="5">
|
||||
<emphasis id="E4C4EABC7703550B2858A25324E1F877" bold="true" pageId="4" pageNumber="89">
|
||||
Description of
|
||||
<taxonomicName id="11B04D2D7703550B28F1A2532419F877" authority="BT" authorityName="BT" class="Gammaproteobacteria" family="Burkholderiaceae" genus="Paraburkholderia" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Burkholderiales" pageId="4" pageNumber="89" phylum="Proteobacteria" rank="species" species="kirstenboschensis">
|
||||
<emphasis id="E4C4EABC7703550B28F1A253220FF897" bold="true" box="[1006,1404,1864,1888]" italics="true" pageId="4" pageNumber="89">Paraburkholderia kirstenboschensis</emphasis>
|
||||
BT
|
||||
</taxonomicName>
|
||||
368
|
||||
</emphasis>
|
||||
</heading>
|
||||
</paragraph>
|
||||
<paragraph id="D60F36AE770355092841A2822341F8B8" blockId="4.[862,1443,1945,1969]" lastBlockId="6.[839,1444,1557,1968]" lastPageId="6" lastPageNumber="91" pageId="4" pageNumber="89">
|
||||
Cells are Gram-stain-negative, non-flagellated, and rod-shaped. Colonies are white-colored after 3 days of incubation on R2A at 25°C. In the BIOLOG GEN III, positive for
|
||||
<subScript id="4A3434EB7702550A2A09A364265AF966" attach="right" box="[278,297,1657,1681]" fontSize="7" pageId="5" pageNumber="90">D-</subScript>
|
||||
trehalose, pH 6, pH 5,
|
||||
<emphasis id="E4C4EABC7702550A293AA3622544F967" box="[549,567,1657,1680]" italics="true" pageId="5" pageNumber="90">N</emphasis>
|
||||
-
|
||||
<subScript id="4A3434EB7702550A2921A36225EFF966" attach="left" box="[574,668,1657,1681]" fontSize="7" pageId="5" pageNumber="90">acetyl-D-</subScript>
|
||||
glucosamine,
|
||||
<emphasis id="E4C4EABC7702550A2BFFA3812781F946" box="[224,242,1690,1713]" italics="true" pageId="5" pageNumber="90">N</emphasis>
|
||||
-
|
||||
<subScript id="4A3434EB7702550A2BE7A3822625F946" attach="left" box="[248,342,1689,1713]" fontSize="7" pageId="5" pageNumber="90">acetyl-D-</subScript>
|
||||
galactosamin, 1% NaCl,
|
||||
<emphasis id="E4C4EABC7702550A2979A3812505F946" box="[614,630,1690,1713]" italics="true" pageId="5" pageNumber="90">α</emphasis>
|
||||
-
|
||||
<subScript id="4A3434EB7702550A2960A38425E0F946" attach="none" box="[639,659,1689,1713]" fontSize="7" pageId="5" pageNumber="90">D-</subScript>
|
||||
glucose, D- mannose, D- galactose, L- fucose, L- rhamnose, 1% sodium lactate, D- sorbitol, D- mannitol, D- arabitol, glycerol, troleandomycin, rifamycin SV, glyctl-L- proline, L- alanine, L- arginine, L- aspartic acid, L- glutamic acid, L- histidine, L- pyroglutamic acid, L- serine, lincomycin, D- galacturonic acid, L- galactonic acid lactone, D- gluconic acid, D- glucuronic acid, mucic acid, quinic acid, D- saccharic acid, vancomycin, tetrazolium violet, tetrazolium blue,
|
||||
<emphasis id="E4C4EABC7702550A29ADA28725CCF844" box="[690,703,1948,1971]" italics="true" pageId="5" pageNumber="90">p</emphasis>
|
||||
-hydroxy-pheylacetic acid, L- lactic acid, citric acid, D- malic acid, L- malic acid, bromo-succinic acid,
|
||||
<emphasis id="E4C4EABC7702550A2FCDA3422392F987" box="[1234,1249,1625,1648]" italics="true" pageId="5" pageNumber="90">γ</emphasis>
|
||||
-amino-butryric acid,
|
||||
<emphasis id="E4C4EABC7702550A287BA3622400F966" box="[868,883,1657,1681]" italics="true" pageId="5" pageNumber="90">β</emphasis>
|
||||
-
|
||||
<subScript id="4A3434EB7702550A2865A3622499F978" attach="left" box="[890,1002,1657,1681]" fontSize="7" pageId="5" pageNumber="90">hydroxy-D</subScript>
|
||||
,
|
||||
<subScript id="4A3434EB7702550A28E5A364237FF966" attach="right" box="[1018,1036,1657,1681]" fontSize="7" pageId="5" pageNumber="90">L-</subScript>
|
||||
butyric acid, propionic acid, acetic acid, formic acid and aztreonam; weak positive for
|
||||
<subScript id="4A3434EB7702550A2E22A3842222F946" attach="right" box="[1341,1361,1689,1713]" fontSize="7" pageId="5" pageNumber="90">D-</subScript>
|
||||
fructose, D- fucose, fusidic acid, D- serine, myo-inositol, D- glucose-6-PO
|
||||
<subScript id="4A3434EB7702550A2885A3FA24D0F905" attach="left" box="[922,931,1761,1778]" fontSize="7" pageId="5" pageNumber="90">4</subScript>
|
||||
, D- fructose-6-PO
|
||||
<subScript id="4A3434EB7702550A2F7DA3FA2318F905" attach="right" box="[1122,1131,1761,1778]" fontSize="7" pageId="5" pageNumber="90">4</subScript>
|
||||
, guanidine HCl, niaproof 4, methyl pyruvate,
|
||||
<emphasis id="E4C4EABC7702550A2F19A3E12365F8E6" box="[1030,1046,1786,1809]" italics="true" pageId="5" pageNumber="90">α</emphasis>
|
||||
-keto-glutaric acid, potassium tellurite, tween40,
|
||||
<emphasis id="E4C4EABC7702550A28C4A2002498F8C5" box="[987,1003,1819,1842]" italics="true" pageId="5" pageNumber="90">α</emphasis>
|
||||
-hydroxy-butyric acid and acetoacetic acid; but negative for dextrin, D- maltose, D- cellobiolose, gentiobiose, sucrose, D- turanose, stachyose, D- raffinose,
|
||||
<emphasis id="E4C4EABC7702550A2836A260244AF865" box="[809,825,1915,1938]" italics="true" pageId="5" pageNumber="90">α</emphasis>
|
||||
-
|
||||
<subScript id="4A3434EB7702550A285DA29A2424F864" attach="none" box="[834,855,1915,1939]" fontSize="7" pageId="5" pageNumber="90">D-</subScript>
|
||||
lactose,
|
||||
<subScript id="4A3434EB7702550A28AAA29A24BAF864" attach="right" box="[949,969,1915,1939]" fontSize="7" pageId="5" pageNumber="90">D-</subScript>
|
||||
melibiose,
|
||||
<emphasis id="E4C4EABC7702550A2F5AA2602327F864" box="[1093,1108,1915,1939]" italics="true" pageId="5" pageNumber="90">β</emphasis>
|
||||
-
|
||||
<subScript id="4A3434EB7702550A2F44A26023B5F864" attach="left" box="[1115,1222,1915,1939]" fontSize="7" pageId="5" pageNumber="90">methyl-D-</subScript>
|
||||
glucoside,
|
||||
<subScript id="4A3434EB7702550A2E5FA29A2226F864" attach="right" box="[1344,1365,1915,1939]" fontSize="7" pageId="5" pageNumber="90">D-</subScript>
|
||||
salicin,
|
||||
<emphasis id="E4C4EABC7702550A2846A2872418F844" box="[857,875,1948,1971]" italics="true" pageId="5" pageNumber="90">N</emphasis>
|
||||
-acetyl-
|
||||
<emphasis id="E4C4EABC7702550A28A2A28024BFF844" box="[957,972,1947,1971]" italics="true" pageId="5" pageNumber="90">β</emphasis>
|
||||
-mannosamin,
|
||||
<emphasis id="E4C4EABC7702550A2F72A287230CF844" box="[1133,1151,1948,1971]" italics="true" pageId="5" pageNumber="90">N</emphasis>
|
||||
-acetyl neuraminic acid, 4% NaCl, 8% NaCl, 3-methyl-glucose, inosine,
|
||||
<subScript id="4A3434EB7701550929A9A30025BAF9DB" attach="right" box="[694,713,1557,1580]" fontSize="7" pageId="6" pageNumber="91">D-</subScript>
|
||||
aspartic acid, D- serine, minocycline, gelatin, pectin, glucuronamide, D- lactic acid methyl ester, nalidixic acid, lithium chloride,
|
||||
<emphasis id="E4C4EABC770155092A0BA36D2657F97A" box="[276,292,1654,1677]" italics="true" pageId="6" pageNumber="91">α</emphasis>
|
||||
-keto butyric acid, sodium butyrate and sodium bromate. In API 20NE test, positive for urease; weak positive for
|
||||
<emphasis id="E4C4EABC770155092A2AA3AD2637F939" box="[309,324,1718,1742]" italics="true" pageId="6" pageNumber="91">β</emphasis>
|
||||
-galactosidase; but negative for reduction of nitrates (NO
|
||||
<subScript id="4A3434EB770155092A4DA3C52628F918" attach="left" box="[338,347,1758,1775]" fontSize="7" pageId="6" pageNumber="91">3</subScript>
|
||||
) to nitrite (NO
|
||||
<subScript id="4A3434EB77015509291EA3C52579F918" attach="left" box="[513,522,1758,1775]" fontSize="7" pageId="6" pageNumber="91">2</subScript>
|
||||
<superScript id="21C59BE6770155092915A3CF2567F916" attach="right" box="[522,532,1748,1761]" fontSize="7" pageId="6" pageNumber="91">-</superScript>
|
||||
), reduction of nitrates (NO
|
||||
<subScript id="4A3434EB770155092BC2A3E42795F8E7" attach="right" box="[221,230,1791,1808]" fontSize="7" pageId="6" pageNumber="91">3</subScript>
|
||||
) to nitrogen (N
|
||||
<subScript id="4A3434EB770155092A93A3E426E6F8E7" attach="right" box="[396,405,1791,1808]" fontSize="7" pageId="6" pageNumber="91">2</subScript>
|
||||
), indole production on tryptophan, glucose fermentation, esculin hydrolysis, gelatin hydrolysis and arginine dihydrolase. D- Glucose, L- arabinose, D- mannose, D- mannitol, potassium gluconate, adipic acid, malic acid, trisodium citrate and phenylacetic acid were utilized whereas,
|
||||
<emphasis id="E4C4EABC770155092A73A282260DF847" box="[364,382,1945,1968]" italics="true" pageId="6" pageNumber="91">N</emphasis>
|
||||
-acetyl-D- glucosamine (weak), capric acid (weak) were utilized; but D- maltose were not utilized. In API 32GN test,
|
||||
<subScript id="4A3434EB770155092F02A3002343F9DA" attach="right" box="[1053,1072,1557,1581]" fontSize="7" pageId="6" pageNumber="91">L-</subScript>
|
||||
rhamnose,
|
||||
<emphasis id="E4C4EABC770155092FB2A30D23CCF9DA" box="[1197,1215,1558,1581]" italics="true" pageId="6" pageNumber="91">N</emphasis>
|
||||
-acetyl-glucosamine, D- ribose, inositol, D- mannitol, D- glucose, D- fucose, D- sorbitol, L- arabinose, L- histidine, potassium 2-ketogluconate, L- proline, sodium acetate, lactic acid, L- alanine, potassium 5-ketogluconate,
|
||||
<subScript id="4A3434EB770155092F38A387234BF959" attach="right" box="[1063,1080,1686,1710]" fontSize="7" pageId="6" pageNumber="91">L-</subScript>
|
||||
serine, propionic acid, capric acid, valeric acid, 3-hydroxybutyric acid, 4-hydroxybenzoic acid were utilized, D- saccharose (sucrose), D- maltose, itaconic acid, suberic acid, sodium malonate, glycogen, 3-hydroxybenzoic acid, salicin, D- melibiose, trisodium citrate were not utilized.
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
<caption id="82CF66267702550A2B8FA0BC242FFA05" ID-DOI="http://doi.org/10.5281/zenodo.13140536" ID-Zenodo-Dep="13140536" httpUri="https://zenodo.org/record/13140536/files/figure.png" pageId="5" pageNumber="90" startId="5.[144,177,1447,1469]" targetBox="[364,1193,264,1414]" targetPageId="5" targetType="figure">
|
||||
<paragraph id="D60F36AE7702550A2B8FA0BC242FFA05" blockId="5.[144,1414,1447,1522]" pageId="5" pageNumber="90">
|
||||
<emphasis id="E4C4EABC7702550A2B8FA0BC27BEFA4B" bold="true" box="[144,205,1447,1469]" pageId="5" pageNumber="90">Fig. 4.</emphasis>
|
||||
Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the species
|
||||
<taxonomicName id="11B04D2D7702550A291DA0D925C8FA20" box="[514,699,1474,1495]" class="Betaproteobacteria" family="Comamonadaceae" genus="Variovorax" kingdom="Bacteria" order="Burkholderiales" pageId="5" pageNumber="90" phylum="Proteobacteria" rank="species" species="gossypii">
|
||||
<emphasis id="E4C4EABC7702550A291DA0D925C8FA20" box="[514,699,1474,1495]" italics="true" pageId="5" pageNumber="90">Variovorax gossypii</emphasis>
|
||||
</taxonomicName>
|
||||
. Bootstrap values (>70%) are shown above nodes for the neighbor-joining methods. Bar: 0.01 and 0.02 substitutions per nucleotide position, respectively.
|
||||
</paragraph>
|
||||
</caption>
|
||||
<caption id="82CF6626770155092BB1A098243EFA38" ID-DOI="http://doi.org/10.5281/zenodo.13140539" ID-Zenodo-Dep="13140539" httpUri="https://zenodo.org/record/13140539/files/figure.png" pageId="6" pageNumber="91" startId="6.[174,207,1411,1433]" targetBox="[392,1237,262,1380]" targetPageId="6" targetType="figure">
|
||||
<paragraph id="D60F36AE770155092BB1A098243EFA38" blockId="6.[174,1444,1411,1487]" pageId="6" pageNumber="91">
|
||||
<emphasis id="E4C4EABC770155092BB1A0982798FA6E" bold="true" box="[174,235,1411,1433]" pageId="6" pageNumber="91">Fig. 5.</emphasis>
|
||||
Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the species
|
||||
<taxonomicName id="11B04D2D77015509290BA08525C1FA43" box="[532,690,1438,1460]" class="Betaproteobacteria" family="Oxalobacteraceae" genus="Massilia" kingdom="Bacteria" order="Burkholderiales" pageId="6" pageNumber="91" phylum="Proteobacteria" rank="species" species="neuiana">
|
||||
<emphasis id="E4C4EABC77015509290BA08525C1FA43" box="[532,690,1438,1460]" italics="true" pageId="6" pageNumber="91">Massilia neuiana</emphasis>
|
||||
</taxonomicName>
|
||||
. Bootstrap values (>70%) are shown above nodes for the neighbor-joining methods. Bar: 0.01 and 0.02 substitutions per nucleotide position, respectively.
|
||||
</paragraph>
|
||||
</caption>
|
||||
<subSubSection id="9EAA6525770155092841A243248FF847" pageId="6" pageNumber="91" type="description">
|
||||
<paragraph id="D60F36AE770155092841A243248FF847" blockId="6.[839,1444,1557,1968]" pageId="6" pageNumber="91">
|
||||
Strain BT368 (
|
||||
<emphasis id="E4C4EABC770155092F1BA24C236BF898" bold="true" box="[1028,1048,1879,1903]" pageId="6" pageNumber="91">=</emphasis>
|
||||
NIBRBAC000503025) was isolated from a soil sample, Gyeongju City in
|
||||
<collectingRegion id="1474F84C770155092FECA26324DAF847" country="South Korea" name="Gyeongbuk" pageId="6" pageNumber="91">Gyeongsangbuk Province</collectingRegion>
|
||||
,
|
||||
<collectingCountry id="AEA7763E7701550928ACA282248BF847" box="[947,1016,1945,1968]" name="South Korea" pageId="6" pageNumber="91">Korea</collectingCountry>
|
||||
.
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
</treatment>
|
||||
</document>
|
||||
188
data/5E/19/87/5E1987B87705550B2858A3FC24E3F8E8.xml
Normal file
188
data/5E/19/87/5E1987B87705550B2858A3FC24E3F8E8.xml
Normal file
|
|
@ -0,0 +1,188 @@
|
|||
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<mods:titleInfo id="B8A866B779069E5D5ECCE63E2F86D7ED">
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<mods:title id="AAA1860405988D3C964B818445F83637">Identification of 12 radiation-resistant bacterial species in the phylum Proteobacteria new to Korea</mods:title>
|
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</mods:role>
|
||||
<mods:namePart id="B3EB885F9BB3F3653E29E5343102283A">Maeng, Soohyun</mods:namePart>
|
||||
<mods:affiliation id="AEE6BA61A465F2275A00A0074AB04F4F">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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</mods:role>
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<mods:namePart id="3F6340A649F25F6B3DCCCCE502886B92">Park, Yuna</mods:namePart>
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||||
<mods:affiliation id="E4740712EC34851CCD49F97E1BFAB599">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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</mods:role>
|
||||
<mods:namePart id="92D207DB65FB4D83E03E07AC3AB95449">Lee, Sang Eun</mods:namePart>
|
||||
<mods:affiliation id="35F4A3D66C21013FFCFF2BB50B0A356B">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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</mods:name>
|
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|
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<mods:namePart id="8005B4E28636C57F36BD46302BC79B3D">Lee, Byoung-Hee</mods:namePart>
|
||||
<mods:affiliation id="3830697AF7F8EA0B1BD9306C9B4125B4">Environmental Research Complex, National Institute of Biological Resources, Incheon 22689, Republic of Korea</mods:affiliation>
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</mods:role>
|
||||
<mods:namePart id="CE40A75A0455D0C836ACAD2DCCFA73A1">Kim, Ki-eun Lee and Myung Kyum</mods:namePart>
|
||||
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|
||||
<mods:typeOfResource id="998E9D5225EB6F9642F85A6619025CCF">text</mods:typeOfResource>
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<mods:title id="6CA05D0719301BE25830DAA6026E8BEC">Journal of Species Research</mods:title>
|
||||
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|
||||
<mods:part id="6933A4995068D60C65FC858DDFB05471">
|
||||
<mods:date id="89FC1B049DD2C5AF0E54242FA4737B35">2020</mods:date>
|
||||
<mods:detail id="C8634B6D1D3F2DF4BF1096384EF2B24E" type="volume">
|
||||
<mods:number id="5899417CB2C9106EA40D3F235453B1DD">9</mods:number>
|
||||
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|
||||
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|
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|
||||
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|
||||
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|
||||
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|
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|
||||
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|
||||
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|
||||
</mods:relatedItem>
|
||||
<mods:classification id="B7ED1613F8A8E3F3560CA8E2C1CEFAF3">journal article</mods:classification>
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||||
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||||
<mods:identifier id="B1D93DE915E7D0A3048D549AA208C827" type="ISSN">2713-8615</mods:identifier>
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||||
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|
||||
<treatment id="5E1987B87705550B2858A3FC24E3F8E8" ID-DOI="http://doi.org/10.5281/zenodo.13140517" ID-Zenodo-Dep="13140517" LSID="urn:lsid:plazi:treatment:5E1987B87705550B2858A3FC24E3F8E8" httpUri="http://treatment.plazi.org/id/5E1987B87705550B2858A3FC24E3F8E8" lastPageId="4" lastPageNumber="89" pageId="2" pageNumber="87">
|
||||
<subSubSection id="9EAA65257705550B2858A3FC2249F948" lastPageId="4" lastPageNumber="89" pageId="2" pageNumber="87" type="nomenclature">
|
||||
<paragraph id="D60F36AE7705550D2858A3FC222AF908" blockId="2.[839,1369,1767,1791]" box="[839,1369,1767,1791]" pageId="2" pageNumber="87">
|
||||
<heading id="8D4781C27705550D2858A3FC222AF908" box="[839,1369,1767,1791]" fontSize="10" level="2" pageId="2" pageNumber="87" reason="5">
|
||||
<emphasis id="E4C4EABC7705550D2858A3FC222AF908" bold="true" box="[839,1369,1767,1791]" pageId="2" pageNumber="87">
|
||||
Description of
|
||||
<taxonomicName id="11B04D2D7705550D28F1A3FC2242F908" authority="BT" authorityName="BT" box="[1006,1329,1767,1791]" class="Gammaproteobacteria" family="Burkholderiaceae" genus="Caballeronia" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Burkholderiales" pageId="2" pageNumber="87" phylum="Proteobacteria" rank="species" species="cordobensis">
|
||||
<emphasis id="E4C4EABC7705550D28F1A3FC2274F908" bold="true" box="[1006,1287,1767,1791]" italics="true" pageId="2" pageNumber="87">Caballeronia cordobensis</emphasis>
|
||||
BT
|
||||
</taxonomicName>
|
||||
434
|
||||
</emphasis>
|
||||
</heading>
|
||||
</paragraph>
|
||||
<paragraph id="D60F36AE7705550B2841A2332249F948" blockId="2.[839,1444,1832,1985]" lastBlockId="4.[839,1444,1573,1823]" lastPageId="4" lastPageNumber="89" pageId="2" pageNumber="87">
|
||||
Cells are Gram-stain-negative, non-flagellated, and cocci-shaped. Colonies are white-colored after 3 days of incubation on R2A at 25°C. In the BIOLOG GEN III, positive for pH 6, 1% NaCl,
|
||||
<emphasis id="E4C4EABC7705550D2F8FA29223D3F857" box="[1168,1184,1929,1952]" italics="true" pageId="2" pageNumber="87">α</emphasis>
|
||||
-
|
||||
<subScript id="4A3434EB7705550D2FB5A29423CCF856" attach="none" box="[1194,1215,1929,1953]" fontSize="7" pageId="2" pageNumber="87">D-</subScript>
|
||||
glucose,
|
||||
<subScript id="4A3434EB7705550D2E3AA2942249F857" attach="right" box="[1317,1338,1929,1952]" fontSize="7" pageId="2" pageNumber="87">D-</subScript>
|
||||
mannose, D- fructose, D- galactose, L- rhamnose, 1% sodium lactate, myo-inositol, D- glucose-6-PO
|
||||
<subScript id="4A3434EB7704550C2ACAA32D26ADF9B0" attach="right" box="[469,478,1590,1607]" fontSize="7" pageId="3" pageNumber="88">4</subScript>
|
||||
, D- fructose-6-PO
|
||||
<subScript id="4A3434EB7704550C2981A32D25D4F9B0" attach="left" box="[670,679,1590,1607]" fontSize="7" pageId="3" pageNumber="88">4</subScript>
|
||||
, D- aspartic acid, lincomycin, D- galacturonic acid, D- glucuronic acid, mucic acid, quinic acid, D- saccharic acid, tetrazolium violet, tetrazolium blue,
|
||||
<emphasis id="E4C4EABC7704550C2ADFA39426BCF950" box="[448,463,1679,1703]" italics="true" pageId="3" pageNumber="88">β</emphasis>
|
||||
-hydroxy-D, L- butyric acid, propionic acid and acetic acid; weak positive for pH 5,
|
||||
<emphasis id="E4C4EABC7704550C2B8FA3CA27D1F91F" box="[144,162,1745,1768]" italics="true" pageId="3" pageNumber="88">N</emphasis>
|
||||
-acetyl-D- glucosamine, L- fucose, D- sorbitol, D- mannitol, D- arabitol, rifamycin SV, glyctl-L- proline, L- arginine, L- aspartic acid, L- glutamic acid, L- histidine, L- pyroglutamic acid, guanidine HCl, L- galactonic acid lactone, D- gluconic acid, vancomycin,
|
||||
<emphasis id="E4C4EABC7704550C2A4CA2492613F89E" box="[339,352,1874,1897]" italics="true" pageId="3" pageNumber="88">p</emphasis>
|
||||
-hydroxy-pheylacetic acid, methyl pyruvate, L- lactic acid, citric acid, L- malic acid, bromo-succinic acid, potassium tellurite, tween 40,
|
||||
<emphasis id="E4C4EABC7704550C2926A289253BF85E" box="[569,584,1938,1961]" italics="true" pageId="3" pageNumber="88">γ</emphasis>
|
||||
-amino-butryric acid,
|
||||
<emphasis id="E4C4EABC7704550C2BD6A2A927AAF83E" box="[201,217,1970,1993]" italics="true" pageId="3" pageNumber="88">α</emphasis>
|
||||
-keto butyric acid and aztreonam; but negative for dextrin, D- maltose, D- trehalose, D- cellobiolose, gentiobiose, sucrose,
|
||||
<subScript id="4A3434EB7704550C28A4A34E24BDF991" attach="right" box="[955,974,1615,1638]" fontSize="7" pageId="3" pageNumber="88">D-</subScript>
|
||||
turanose, stachyose,
|
||||
<subScript id="4A3434EB7704550C2FB0A34E23B1F990" attach="right" box="[1199,1218,1615,1639]" fontSize="7" pageId="3" pageNumber="88">D-</subScript>
|
||||
raffinose,
|
||||
<emphasis id="E4C4EABC7704550C2E30A354224CF991" box="[1327,1343,1615,1638]" italics="true" pageId="3" pageNumber="88">α</emphasis>
|
||||
-
|
||||
<subScript id="4A3434EB7704550C2E57A34E222FF990" attach="none" box="[1352,1372,1615,1639]" fontSize="7" pageId="3" pageNumber="88">D-</subScript>
|
||||
lactose, D- melibiose,
|
||||
<emphasis id="E4C4EABC7704550C28F6A374248BF970" box="[1001,1016,1647,1671]" italics="true" pageId="3" pageNumber="88">β</emphasis>
|
||||
-methyl-D- glucoside, D- salicin,
|
||||
<emphasis id="E4C4EABC7704550C2E5FA36B2221F970" box="[1344,1362,1648,1671]" italics="true" pageId="3" pageNumber="88">N</emphasis>
|
||||
-acetyl-
|
||||
<emphasis id="E4C4EABC7704550C284FA394242CF950" box="[848,863,1679,1703]" italics="true" pageId="3" pageNumber="88">β</emphasis>
|
||||
-mannosamin,
|
||||
<emphasis id="E4C4EABC7704550C2F19A38B236BF950" box="[1030,1048,1680,1703]" italics="true" pageId="3" pageNumber="88">N</emphasis>
|
||||
-acetyl-D- galactosamin,
|
||||
<emphasis id="E4C4EABC7704550C2E37A38B2249F950" box="[1320,1338,1680,1703]" italics="true" pageId="3" pageNumber="88">N</emphasis>
|
||||
-acetyl neuraminic acid, 4% NaCl, 8% NaCl, 3-methyl-glucose,
|
||||
<subScript id="4A3434EB7704550C2835A3CD244EF91F" attach="none" box="[810,829,1744,1768]" fontSize="7" pageId="3" pageNumber="88">D-</subScript>
|
||||
fucose, inosine, fusidic acid,
|
||||
<subScript id="4A3434EB7704550C2F61A3CD23E2F91F" attach="right" box="[1150,1169,1744,1768]" fontSize="7" pageId="3" pageNumber="88">D-</subScript>
|
||||
serine, glycerol,
|
||||
<subScript id="4A3434EB7704550C2E55A3CD222FF910" attach="right" box="[1354,1372,1744,1767]" fontSize="7" pageId="3" pageNumber="88">D-</subScript>
|
||||
serine, troleandomycin, minocycline, gelatin, L- alanine, L- serine, niaproof 4, pectin, glucuronamide, D- lactic acid methyl ester,
|
||||
<emphasis id="E4C4EABC7704550C28A7A22A24BBF8BF" box="[952,968,1841,1864]" italics="true" pageId="3" pageNumber="88">α</emphasis>
|
||||
-keto-glutaric acid,
|
||||
<subScript id="4A3434EB7704550C2F86A22C23DFF8BE" attach="right" box="[1177,1196,1841,1865]" fontSize="7" pageId="3" pageNumber="88">D-</subScript>
|
||||
malic acid, nalidixic acid, lithium chloride,
|
||||
<emphasis id="E4C4EABC7704550C2F03A249235FF89E" box="[1052,1068,1874,1897]" italics="true" pageId="3" pageNumber="88">α</emphasis>
|
||||
-hydroxy-butyric acid, acetoacetic acid, formic acid, sodium butyrate and sodium bromate. In API 20NE test, positive for reduction of nitrates (NO
|
||||
<subScript id="4A3434EB7704550C2848A2A1242CF83C" attach="left" box="[855,863,1978,1995]" fontSize="7" pageId="3" pageNumber="88">3</subScript>
|
||||
) to nitrite (NO
|
||||
<subScript id="4A3434EB7704550C28E0A2A1237BF83C" attach="left" box="[1023,1032,1978,1995]" fontSize="7" pageId="3" pageNumber="88">2</subScript>
|
||||
<superScript id="21C59BE67704550C2F18A2AB2362F84A" attach="right" box="[1031,1041,1968,1981]" fontSize="7" pageId="3" pageNumber="88">-</superScript>
|
||||
) and reduction of nitrates (NO
|
||||
<subScript id="4A3434EB7704550C2E47A2A12213F83C" attach="right" box="[1368,1376,1978,1995]" fontSize="7" pageId="3" pageNumber="88">3</subScript>
|
||||
) to nitrogen (N
|
||||
<subScript id="4A3434EB7703550B2A3BA336265FF9C9" attach="left" box="[292,300,1581,1598]" fontSize="7" pageId="4" pageNumber="89">2</subScript>
|
||||
); weak positive for urease, esculin hydrolysis and gelatin hydrolysis; but negative for indole production on tryptophan, glucose fermentation, arginine dihydrolase and
|
||||
<emphasis id="E4C4EABC7703550B2BC3A39D2798F969" box="[220,235,1670,1694]" italics="true" pageId="4" pageNumber="89">β</emphasis>
|
||||
-galactosidase. D- Glucose, L- arabinose, D- mannose, D- mannitol,
|
||||
<emphasis id="E4C4EABC7703550B2A27A3BC2639F949" box="[312,330,1703,1726]" italics="true" pageId="4" pageNumber="89">N</emphasis>
|
||||
-acetyl-D- glucosamine, malic acid, phenylacetic acid (weak), potassium gluconate (weak) and trisodium citrate (weak) were utilized whereas, D- maltose, capric acid and adipic acid were not utilized. In API 32GN test, L- rhamnose,
|
||||
<emphasis id="E4C4EABC7703550B2AA6A23326B8F8C8" box="[441,459,1832,1855]" italics="true" pageId="4" pageNumber="89">N</emphasis>
|
||||
-acetyl-glucosamine, inositol, sodium acetate, lactic acid,
|
||||
<subScript id="4A3434EB7703550B2AC3A255269EF897" attach="right" box="[476,493,1864,1888]" fontSize="7" pageId="4" pageNumber="89">L-</subScript>
|
||||
alanine, potassium 5-ketogluconate, 3-hydroxybenzoic acid, L- serine, D- mannitol, D- glucose, L- arabinose, propionic acid, L- histidine, potassium 2-ketogluconate, 3-hydroxybutyric acid, 4-hydroxybenzoic acid and L- proline were utilized; D- ribose, D- saccharose (sucrose), D- maltose, itaconic acid, suberic acid, sodium malonate, D- fucose, D- sorbitol, capric acid, valeric acid and trisodium citrate were weak utilized whereas, glycogen, salicin and D- melibiose were utilized.
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
<caption id="82CF66267704550C2B8FA086240DFA1F" ID-DOI="http://doi.org/10.5281/zenodo.13140529" ID-Zenodo-Dep="13140529" httpUri="https://zenodo.org/record/13140529/files/figure.png" pageId="3" pageNumber="88" startId="3.[144,177,1437,1459]" targetBox="[366,1194,259,1401]" targetPageId="3" targetType="figure">
|
||||
<paragraph id="D60F36AE7704550C2B8FA086240DFA1F" blockId="3.[143,1413,1437,1512]" pageId="3" pageNumber="88">
|
||||
<emphasis id="E4C4EABC7704550C2B8FA08627BDFA45" bold="true" box="[144,206,1437,1459]" pageId="3" pageNumber="88">Fig. 2.</emphasis>
|
||||
Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the species
|
||||
<taxonomicName id="11B04D2D7704550C2AE8A0A32590FA3A" box="[503,739,1464,1485]" class="Gammaproteobacteria" family="Burkholderiaceae" genus="Caballeronia" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Burkholderiales" pageId="3" pageNumber="88" phylum="Proteobacteria" rank="species" species="cordobensis">
|
||||
<emphasis id="E4C4EABC7704550C2AE8A0A32590FA3A" box="[503,739,1464,1485]" italics="true" pageId="3" pageNumber="88">Caballeronia cordobensis</emphasis>
|
||||
</taxonomicName>
|
||||
. Bootstrap values (>70%) are shown above nodes for the neighbor-joining methods. Bar: 0.01 and 0.02 substitutions per nucleotide position, respectively.
|
||||
</paragraph>
|
||||
</caption>
|
||||
<caption id="82CF66267703550B2BB1A08F236BFA28" ID-DOI="http://doi.org/10.5281/zenodo.13140531" ID-Zenodo-Dep="13140531" httpUri="https://zenodo.org/record/13140531/files/figure.png" pageId="4" pageNumber="89" startId="4.[174,207,1428,1450]" targetBox="[386,1243,259,1399]" targetPageId="4" targetType="figure">
|
||||
<paragraph id="D60F36AE7703550B2BB1A08F236BFA28" blockId="4.[174,1444,1428,1503]" pageId="4" pageNumber="89">
|
||||
<emphasis id="E4C4EABC7703550B2BB1A08F2798FA5E" bold="true" box="[174,235,1428,1450]" pageId="4" pageNumber="89">Fig. 3.</emphasis>
|
||||
Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the species
|
||||
<taxonomicName id="11B04D2D7703550B293BA0B52404FA34" box="[548,887,1454,1475]" class="Gammaproteobacteria" family="Burkholderiaceae" genus="Paraburkholderia" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Burkholderiales" pageId="4" pageNumber="89" phylum="Proteobacteria" rank="species" species="kirstenboschensis">
|
||||
<emphasis id="E4C4EABC7703550B293BA0B52404FA34" box="[548,887,1454,1475]" italics="true" pageId="4" pageNumber="89">Paraburkholderia kirstenboschensis</emphasis>
|
||||
</taxonomicName>
|
||||
. Bootstrap values (>70%) are shown above nodes for the neighbor-joining methods. Bar: 0.01 and 0.02 substitutions per nucleotide position, respectively.
|
||||
</paragraph>
|
||||
</caption>
|
||||
<subSubSection id="9EAA65257703550B2841A3DC24E3F8E8" pageId="4" pageNumber="89" type="description">
|
||||
<paragraph id="D60F36AE7703550B2841A3DC24E3F8E8" blockId="4.[839,1444,1573,1823]" pageId="4" pageNumber="89">
|
||||
Strain BT434 (
|
||||
<emphasis id="E4C4EABC7703550B2F1BA3DD236BF929" bold="true" box="[1028,1048,1734,1758]" pageId="4" pageNumber="89">=</emphasis>
|
||||
NIBRBAC000503050) was isolated from a soil sample, Ganghwa Island in
|
||||
<collectingRegion id="1474F84C7703550B2E13A3FC2216F908" box="[1292,1381,1767,1791]" country="South Korea" name="Incheon" pageId="4" pageNumber="89">Incheon</collectingRegion>
|
||||
City,
|
||||
<collectingCountry id="AEA7763E7703550B2858A21324FFF8E8" box="[839,908,1800,1823]" name="South Korea" pageId="4" pageNumber="89">Korea</collectingCountry>
|
||||
.
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
</treatment>
|
||||
</document>
|
||||
199
data/5E/19/87/5E1987B87709551F2BB1A3A82478FB53.xml
Normal file
199
data/5E/19/87/5E1987B87709551F2BB1A3A82478FB53.xml
Normal file
|
|
@ -0,0 +1,199 @@
|
|||
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<mods:mods id="9F486EF7F11E3AD92A51D9E87E00D9A5" xmlns:mods="http://www.loc.gov/mods/v3">
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<mods:titleInfo id="97CC3343CE9A2B5B8F494F3BC9E11172">
|
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<mods:title id="04DFC0948BE6BB9A1BB4A0CB5F01E250">Identification of 12 radiation-resistant bacterial species in the phylum Proteobacteria new to Korea</mods:title>
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|
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<mods:namePart id="30CF3117B96FA9649477A2656F8BE5F2">Han, Joo Hyun</mods:namePart>
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<mods:roleTerm id="723FF3276B7F2FB8C31E776CB64E75FB">Author</mods:roleTerm>
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</mods:role>
|
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<mods:namePart id="5D5F4801B3DCB5127362C6B9B502DB91">Maeng, Soohyun</mods:namePart>
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<mods:affiliation id="AF872E6BB1B83FC3B4A910664AF17D2A">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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</mods:name>
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|
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<mods:namePart id="A0687F92804DD7DFD6027AB354B8B086">Park, Yuna</mods:namePart>
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||||
<mods:affiliation id="9867F4B1B6A01FA756DD75796F1C4E70">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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</mods:name>
|
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</mods:role>
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||||
<mods:namePart id="6F0AFD6136F83EA205DFB71649DF5BB7">Lee, Sang Eun</mods:namePart>
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<mods:affiliation id="C436C07E8E343245A0129D487BA67D19">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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</mods:name>
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|
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<mods:namePart id="101EFC1F9ED3C8BD92819139CD885B74">Lee, Byoung-Hee</mods:namePart>
|
||||
<mods:affiliation id="142D7AD03D22E7C7A5A83D1E74F1ACE3">Environmental Research Complex, National Institute of Biological Resources, Incheon 22689, Republic of Korea</mods:affiliation>
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</mods:name>
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</mods:role>
|
||||
<mods:namePart id="C601D4D99FD1F342B8CC8B63B26229BA">Kim, Ki-eun Lee and Myung Kyum</mods:namePart>
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<mods:typeOfResource id="B062AE772F7BEC3F1B35EC83FF5E75C6">text</mods:typeOfResource>
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<mods:title id="8C788804CE26A0AAFD142260AFA3B6EB">Journal of Species Research</mods:title>
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<mods:part id="238A19FC3274CD9750D16B0B88BF2881">
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<mods:date id="D92FE04356FD98B5B7132CCCB0EBDECA">2020</mods:date>
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<mods:number id="7620C5783D45B1752C11192ED6D8ACAC">9</mods:number>
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|
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|
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<mods:classification id="23C0E8F2D3BC1CFACF9108ECE6860ABA">journal article</mods:classification>
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<treatment id="5E1987B87709551F2BB1A3A82478FB53" LSID="urn:lsid:plazi:treatment:5E1987B87709551F2BB1A3A82478FB53" httpUri="http://treatment.plazi.org/id/5E1987B87709551F2BB1A3A82478FB53" lastPageId="16" lastPageNumber="101" pageId="14" pageNumber="99">
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|
||||
<paragraph id="D60F36AE770955012BB1A3A825A4F93B" blockId="14.[174,727,1715,1740]" box="[174,727,1715,1740]" pageId="14" pageNumber="99">
|
||||
<heading id="8D4781C2770955012BB1A3A825A4F93B" box="[174,727,1715,1740]" fontSize="10" level="2" pageId="14" pageNumber="99" reason="5">
|
||||
<emphasis id="E4C4EABC770955012BB1A3A825A4F93B" bold="true" box="[174,727,1715,1740]" pageId="14" pageNumber="99">
|
||||
Description of
|
||||
<taxonomicName id="11B04D2D770955012A4AA3A825DDF93B" authority="BT" authorityName="BT" box="[341,686,1715,1740]" class="Betaproteobacteria" family="Burkholderiaceae" genus="Pseudomonas" kingdom="Bacteria" order="Burkholderiales" pageId="14" pageNumber="99" phylum="Proteobacteria" rank="species" species="reidholzensis">
|
||||
<emphasis id="E4C4EABC770955012A4AA3A825F6F93C" bold="true" box="[341,645,1715,1739]" italics="true" pageId="14" pageNumber="99">Pseudomonas reidholzensis</emphasis>
|
||||
BT
|
||||
</taxonomicName>
|
||||
362
|
||||
</emphasis>
|
||||
</heading>
|
||||
</paragraph>
|
||||
<paragraph id="D60F36AE770955012BDAA3EF22D7F839" blockId="14.[174,779,1780,1998]" lastBlockId="14.[839,1444,1490,1998]" pageId="14" pageNumber="99">
|
||||
Cells are Gram-stain-negative, flagellate, and rod-shaped. Colonies are yellow-colored after 3 days of incubation on R2A at 25°C. In the BIOLOG GEN III, positive for pH 6, pH 5, 1% NaCl, 4% NaCl,
|
||||
<emphasis id="E4C4EABC77095501299CA24E25E0F89B" box="[643,659,1877,1900]" italics="true" pageId="14" pageNumber="99">α</emphasis>
|
||||
-
|
||||
<subScript id="4A3434EB770955012983A24025C2F89A" attach="none" box="[668,689,1877,1901]" fontSize="7" pageId="14" pageNumber="99">D-</subScript>
|
||||
glucose, D- mannose, D- fructose, 1% sodium lactate, fusidic acid, glycerol, troleandomycin, rifamycin SV, L- alanine, L- arginine, L- aspartic acid, L- glutamic acid, L- histidine, L- serine, lincomycin, guanidine HCl, niaproof 4, D- galacturonic acid, D- gluconic acid, D- glucuronic acid, mucic acid, quinic acid, vancomycin, tetrazolium violet, tetrazolium blue, L- lactic acid, citric acid, L- malic acid, nalidixic acid, lithium chloride, potassium tellurite,
|
||||
<emphasis id="E4C4EABC770955012FF8A3482385F99D" box="[1255,1270,1619,1642]" italics="true" pageId="14" pageNumber="99">γ</emphasis>
|
||||
-amino-butryric acid,
|
||||
<emphasis id="E4C4EABC77095501289FA36824FCF97C" box="[896,911,1651,1675]" italics="true" pageId="14" pageNumber="99">β</emphasis>
|
||||
-hydroxy-D, L- butyric acid, propionic acid and acetic acid; weak positive for 8% NaCl, inosine, D- serine, D- fructose-6-PO
|
||||
<subScript id="4A3434EB7709550128ECA3A0248FF93B" attach="left" box="[1011,1020,1723,1740]" fontSize="7" pageId="14" pageNumber="99">4</subScript>
|
||||
, glyctl-L- proline, L- galactonic acid lactone, glucuronamide,
|
||||
<subScript id="4A3434EB770955012F2CA3C12335F91B" attach="right" box="[1075,1094,1748,1772]" fontSize="7" pageId="14" pageNumber="99">D-</subScript>
|
||||
saccharic acid, methyl pyruvate,
|
||||
<emphasis id="E4C4EABC770955012858A3EE2424F8FB" box="[839,855,1781,1804]" italics="true" pageId="14" pageNumber="99">α</emphasis>
|
||||
-keto-glutaric acid, bromo-succinic acid,
|
||||
<emphasis id="E4C4EABC770955012E13A3EE226FF8FB" box="[1292,1308,1781,1804]" italics="true" pageId="14" pageNumber="99">α</emphasis>
|
||||
-keto butyric acid, formic acid and aztreonam; but negative for dextrin, D- maltose, D- trehalose, D- trehalose, gentiobiose, sucrose,
|
||||
<subScript id="4A3434EB770955012857A2402428F89B" attach="none" box="[840,859,1877,1900]" fontSize="7" pageId="14" pageNumber="99">D-</subScript>
|
||||
turanose, stachyose,
|
||||
<subScript id="4A3434EB770955012F23A240233CF89A" attach="right" box="[1084,1103,1877,1901]" fontSize="7" pageId="14" pageNumber="99">D-</subScript>
|
||||
raffinose,
|
||||
<emphasis id="E4C4EABC770955012FA4A24D23B8F89A" box="[1211,1227,1878,1901]" italics="true" pageId="14" pageNumber="99">α</emphasis>
|
||||
-
|
||||
<subScript id="4A3434EB770955012FCBA240239BF89A" attach="none" box="[1236,1256,1877,1901]" fontSize="7" pageId="14" pageNumber="99">D-</subScript>
|
||||
lactose,
|
||||
<subScript id="4A3434EB770955012E5DA2402225F89A" attach="right" box="[1346,1366,1877,1901]" fontSize="7" pageId="14" pageNumber="99">D-</subScript>
|
||||
melibiose,
|
||||
<emphasis id="E4C4EABC770955012865A26E24FAF87A" box="[890,905,1909,1933]" italics="true" pageId="14" pageNumber="99">β</emphasis>
|
||||
-methyl-D- glucoside, D- salicin,
|
||||
<emphasis id="E4C4EABC770955012FC3A26D239DF87A" box="[1244,1262,1910,1933]" italics="true" pageId="14" pageNumber="99">N</emphasis>
|
||||
-acetyl-D- glucosamine,
|
||||
<emphasis id="E4C4EABC77095501288BA28D24D6F85A" box="[916,933,1942,1965]" italics="true" pageId="14" pageNumber="99">N</emphasis>
|
||||
-acetyl-
|
||||
<emphasis id="E4C4EABC7709550128EBA28D2370F859" box="[1012,1027,1942,1966]" italics="true" pageId="14" pageNumber="99">β</emphasis>
|
||||
-mannosamin,
|
||||
<emphasis id="E4C4EABC770955012F82A28D23DDF85A" box="[1181,1198,1942,1965]" italics="true" pageId="14" pageNumber="99">N</emphasis>
|
||||
-acetyl-D- galactosamin,
|
||||
<emphasis id="E4C4EABC770955012858A2AD242AF83A" box="[839,857,1974,1997]" italics="true" pageId="14" pageNumber="99">N</emphasis>
|
||||
-acetyl
|
||||
<emphasis id="E4C4EABC7709550128B5A2AD24CFF83A" box="[938,956,1974,1997]" italics="true" pageId="14" pageNumber="99">N</emphasis>
|
||||
-acetyl neuraminic acid, D- galactose, 3-meth-
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
<subSubSection id="9EAA65257708551F2A7DA2482478FB53" lastPageId="16" lastPageNumber="101" pageId="15" pageNumber="100" type="description">
|
||||
<paragraph id="D60F36AE770855002A7DA2482547F888" blockId="15.[289,732,1855,1919]" pageId="15" pageNumber="100">
|
||||
0 100 300 600 900 1200 UV flux (J m
|
||||
<superScript id="21C59BE677085500293AA26B2543F88F" attach="right" box="[549,560,1903,1912]" fontSize="4" pageId="15" pageNumber="100">-2</superScript>
|
||||
)
|
||||
</paragraph>
|
||||
<paragraph id="D60F36AE770855002891A24D2303F875" blockId="15.[851,1290,1858,1922]" pageId="15" pageNumber="100">
|
||||
0 100 200 300 400 500 UV flux (J m
|
||||
<superScript id="21C59BE6770855002F7EA269231EF88D" attach="right" box="[1121,1133,1905,1914]" fontSize="4" pageId="15" pageNumber="100">-2</superScript>
|
||||
)
|
||||
</paragraph>
|
||||
<caption id="82CF6626770855002B8FA28722F5F83A" ID-DOI="http://doi.org/10.5281/zenodo.13140566" ID-Zenodo-Dep="13140566" httpUri="https://zenodo.org/record/13140566/files/figure.png" pageId="15" pageNumber="100" startId="15.[144,176,1948,1970]" targetBox="[250,1317,259,1873]" targetPageId="15" targetType="figure">
|
||||
<paragraph id="D60F36AE770855002B8FA28722F5F83A" blockId="15.[144,1414,1945,1997]" pageId="15" pageNumber="100">
|
||||
<emphasis id="E4C4EABC770855002B8FA28727A6F846" bold="true" box="[144,213,1948,1970]" pageId="15" pageNumber="100">Fig. 14.</emphasis>
|
||||
UV resistance graph of the strains isolated in this study. Survival rates of
|
||||
<taxonomicName id="11B04D2D770855002878A286249CF846" authorityName="Brooks & Murray" authorityYear="1981" baseAuthorityName="ex Raj et al." baseAuthorityYear="1960" box="[871,1007,1948,1970]" class="Actinobacteridae" family="Micrococcaceae" genus="Deinococcus" kingdom="Bacteria" order="Actinomycetales" pageId="15" pageNumber="100" phylum="Actinobacteria" rank="species" species="radiodurans">
|
||||
<emphasis id="E4C4EABC770855002878A286249CF846" box="[871,1007,1948,1970]" italics="true" pageId="15" pageNumber="100">D. radiodurans</emphasis>
|
||||
</taxonomicName>
|
||||
R1
|
||||
<superScript id="21C59BE6770855002F10A282236BF850" attach="left" box="[1039,1048,1945,1959]" fontSize="6" pageId="15" pageNumber="100">T</superScript>
|
||||
(), strains () and
|
||||
<taxonomicName id="11B04D2D770855002FC8A2862262F846" authorityName="Castellani & Chalmers" authorityYear="1919" baseAuthorityName="Migula" baseAuthorityYear="1895" box="[1239,1297,1948,1970]" class="Gammaproteobacteria" family="Enterobacteriaceae" genus="Escherichia" kingdom="Bacteria" order="Enterobacteriales" pageId="15" pageNumber="100" phylum="Proteobacteria" rank="species" species="coli">
|
||||
<emphasis id="E4C4EABC770855002FC8A2862262F846" box="[1239,1297,1948,1970]" italics="true" pageId="15" pageNumber="100">E. coli</emphasis>
|
||||
</taxonomicName>
|
||||
K12 () are ■ ● ◆ also shown. Strains: a, BT434; b, BT368; c, BT370; d, BT239; e, BT339; f, BT427; g, BT362; h, BT250; i, BT338; j, BT344; k, BT346; l, BT364.
|
||||
</paragraph>
|
||||
</caption>
|
||||
<paragraph id="D60F36AE7717551F2BB1A41E257DFB93" blockId="16.[174,779,261,1188]" pageId="16" pageNumber="101">
|
||||
yl-glucose, D- fucose, L- fucose, L- rhamnose, D- sorbitol, D- mannitol, D- arabitol, myo-inositol, D- glucose-6-PO
|
||||
<subScript id="4A3434EB7717551F29E4A4362477FEC9" attach="left" box="[763,772,301,318]" fontSize="7" pageId="16" pageNumber="101">4</subScript>
|
||||
, D- aspartic acid, D- serine, minocycline, gelatin, L- pyroglutamic acid, pectin,
|
||||
<emphasis id="E4C4EABC7717551F2A9EA47D26FDFE8A" box="[385,398,358,381]" italics="true" pageId="16" pageNumber="101">p</emphasis>
|
||||
-hydroxy-pheylacetic acid,
|
||||
<subScript id="4A3434EB7717551F29A5A47725BDFE89" attach="right" box="[698,718,358,382]" fontSize="7" pageId="16" pageNumber="101">D-</subScript>
|
||||
lactic acid methyl ester, D- malic acid, tween 40,
|
||||
<emphasis id="E4C4EABC7717551F2970A49C250CFE69" box="[623,639,391,414]" italics="true" pageId="16" pageNumber="101">α</emphasis>
|
||||
-hydroxy-butyric acid, acetoacetic acid, sodium butyrate and sodium bromate. In API 20NE test, positive for
|
||||
<emphasis id="E4C4EABC7717551F297FA4DC251CFE28" box="[608,623,455,479]" italics="true" pageId="16" pageNumber="101">β</emphasis>
|
||||
-galactosidase; weak positive for esculin hydrolysis; but negative for reduction of nitrates (NO
|
||||
<subScript id="4A3434EB7717551F2A81A71426D5FDD7" attach="right" box="[414,422,527,544]" fontSize="7" pageId="16" pageNumber="101">3</subScript>
|
||||
) to nitrite (NO
|
||||
<subScript id="4A3434EB7717551F295EA7142539FDD7" attach="left" box="[577,586,527,544]" fontSize="7" pageId="16" pageNumber="101">2</subScript>
|
||||
<superScript id="21C59BE67717551F2956A71E2520FDE5" attach="right" box="[585,595,517,530]" fontSize="7" pageId="16" pageNumber="101">-</superScript>
|
||||
), reduction of nitrates (NO
|
||||
<subScript id="4A3434EB7717551F2A06A7342652FDB7" attach="left" box="[281,289,559,576]" fontSize="7" pageId="16" pageNumber="101">3</subScript>
|
||||
) to nitrogen (N
|
||||
<subScript id="4A3434EB7717551F2ADBA73426BFFDB7" attach="left" box="[452,460,559,576]" fontSize="7" pageId="16" pageNumber="101">2</subScript>
|
||||
), indole production on tryptophan, glucose fermentation, arginine dihydrolase, urease, gelatin hydrolysis. D- Mannitol and D- maltose, D- glucose (weak), L- arabinose (weak), D- mannose, potassium gluconate (weak), adipic acid (weak) and malic acid (weak) were utilized whereas,
|
||||
<emphasis id="E4C4EABC7717551F2AAEA7D226B0FD17" box="[433,451,713,736]" italics="true" pageId="16" pageNumber="101">N</emphasis>
|
||||
-
|
||||
<subScript id="4A3434EB7717551F2AD5A7D2255FFD16" attach="left" box="[458,556,713,737]" fontSize="7" pageId="16" pageNumber="101">acetyl-D-</subScript>
|
||||
glucosamine, capric acid, trisodium citrate and phenylacetic acid were not utilized. In API 32GN test, L- alanine, L- serine, D- glucose, propionic acid, capric acid, valeric acid, trisodium citrate, L- histidine, potassium 2-ketogluconate, 3-hydroxybutyric acid, 4-hydroxybenzoic acid, L- proline, D- ribose, sodium malonate, sodium acetate, lactic acid and 3-hydroxybenzoic acid were utilized whereas, L- rhamnose,
|
||||
<emphasis id="E4C4EABC7717551F2BB1A6D027B3FC15" box="[174,192,971,994]" italics="true" pageId="16" pageNumber="101">N</emphasis>
|
||||
-acetyl-glucosamine, inositol,
|
||||
<subScript id="4A3434EB7717551F2911A6CA2550FC14" attach="right" box="[526,547,971,995]" fontSize="7" pageId="16" pageNumber="101">D-</subScript>
|
||||
saccharose (sucrose), D- maltose, itaconic acid, suberic acid, potassium 5-ketogluconate, glycogen, potassium 5-ketogluconate, glycogen, D- mannitol, salicin, D- melibiose, D- fucose, D- sorbitol and
|
||||
<subScript id="4A3434EB7717551F2BC5A149279FFB93" attach="right" box="[218,236,1100,1124]" fontSize="7" pageId="16" pageNumber="101">L-</subScript>
|
||||
arabinose were not utilized.
|
||||
</paragraph>
|
||||
<paragraph id="D60F36AE7717551F2BDAA1772478FB53" blockId="16.[174,779,261,1188]" pageId="16" pageNumber="101">
|
||||
Strain BT362 (
|
||||
<emphasis id="E4C4EABC7717551F2A74A177260CFB73" bold="true" box="[363,383,1132,1156]" pageId="16" pageNumber="101">=</emphasis>
|
||||
NIBRBAC000503041) was isolated from a soil sample, Seogwipo City in
|
||||
<collectingRegion id="1474F84C7717551F295DA197251EFB53" box="[578,621,1164,1188]" country="South Korea" name="Jeju" pageId="16" pageNumber="101">Jeju</collectingRegion>
|
||||
Island,
|
||||
<collectingCountry id="AEA7763E7717551F29DDA1962474FB53" box="[706,775,1165,1188]" name="South Korea" pageId="16" pageNumber="101">Korea</collectingCountry>
|
||||
.
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
</treatment>
|
||||
</document>
|
||||
182
data/5E/19/87/5E1987B8770B55012858A3052785F97C.xml
Normal file
182
data/5E/19/87/5E1987B8770B55012858A3052785F97C.xml
Normal file
|
|
@ -0,0 +1,182 @@
|
|||
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|
||||
<mods:mods id="75D05E118406F1DD57C5902C4E04578A" xmlns:mods="http://www.loc.gov/mods/v3">
|
||||
<mods:titleInfo id="FC3DCE3BCD6A82BE72E2570F36E71432">
|
||||
<mods:title id="48DFA5F1D547327F0C34913F631A08D2">Identification of 12 radiation-resistant bacterial species in the phylum Proteobacteria new to Korea</mods:title>
|
||||
</mods:titleInfo>
|
||||
<mods:name id="21DF4143A63F83BD2042FF754D51C9D5" type="personal">
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||||
<mods:role id="D337FBFE25BA22C95AF7BB437EFA5297">
|
||||
<mods:roleTerm id="B2E15B2E8782A3F4D50CAE7816E1CEAA">Author</mods:roleTerm>
|
||||
</mods:role>
|
||||
<mods:namePart id="A45BE7454AD1C1BF8BD440A2969FDEB4">Han, Joo Hyun</mods:namePart>
|
||||
<mods:affiliation id="20A68BAC092DF89D179C7001236B1840">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
|
||||
</mods:name>
|
||||
<mods:name id="18097B9449BD9B50B9132A66B50B5112" type="personal">
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||||
<mods:role id="9B22EF427DEA2016B26801D983D8FFE3">
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||||
<mods:roleTerm id="992F882646877414050F4803652C9D98">Author</mods:roleTerm>
|
||||
</mods:role>
|
||||
<mods:namePart id="2986CD8F22C097CF196B32AEABB27B51">Maeng, Soohyun</mods:namePart>
|
||||
<mods:affiliation id="C6A0FEB9B495A49B89BEEADC8F56F2EA">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
|
||||
</mods:name>
|
||||
<mods:name id="993F6A82D8A7A043461A4F4D16DD30C6" type="personal">
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|
||||
</mods:role>
|
||||
<mods:namePart id="B5C0FB43739FEC30B6AA6E4DE8AE528D">Park, Yuna</mods:namePart>
|
||||
<mods:affiliation id="AF29717F95F617115EEDD08BD7A2F4B9">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
|
||||
</mods:name>
|
||||
<mods:name id="8FADEB9ED4332C5875359AA16C1F483D" type="personal">
|
||||
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|
||||
<mods:roleTerm id="CC2A44257FF5EA2D9E4CBC9086A054C5">Author</mods:roleTerm>
|
||||
</mods:role>
|
||||
<mods:namePart id="D85FB1B8E76FF405E63FDBF109B79ABD">Lee, Sang Eun</mods:namePart>
|
||||
<mods:affiliation id="27FCC3A645524B540FF7C339239F54C8">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
|
||||
</mods:name>
|
||||
<mods:name id="2158E42D79BC717BE791277576C74964" type="personal">
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|
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<mods:roleTerm id="36B9A305C8269C0DC7F6128BC2D07386">Author</mods:roleTerm>
|
||||
</mods:role>
|
||||
<mods:namePart id="8016927392B175F6D3625C1B4461B59B">Lee, Byoung-Hee</mods:namePart>
|
||||
<mods:affiliation id="45008C360C2581E4BAE6F24F919E4591">Environmental Research Complex, National Institute of Biological Resources, Incheon 22689, Republic of Korea</mods:affiliation>
|
||||
</mods:name>
|
||||
<mods:name id="963A9A4DFFD0473C76772D70752FD9FB" type="personal">
|
||||
<mods:role id="103A46004BCEA6FBBB705B21CA072C94">
|
||||
<mods:roleTerm id="0FE15D267A6747E8972944AC6C791D8C">Author</mods:roleTerm>
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||||
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|
||||
<mods:namePart id="D05C3BB3596650C747CD1EAF5DE09945">Kim, Ki-eun Lee and Myung Kyum</mods:namePart>
|
||||
</mods:name>
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<mods:typeOfResource id="AD73877F181A2996B1EE84AB4B914EFC">text</mods:typeOfResource>
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<mods:titleInfo id="199F3A71CD3BA89E490C9B1F641792A7">
|
||||
<mods:title id="87CC15DA2E2EF3814ED1BA175A0954F6">Journal of Species Research</mods:title>
|
||||
</mods:titleInfo>
|
||||
<mods:part id="013F1E3B3BFD985CCA5CAE84EF1E1D4A">
|
||||
<mods:date id="AB95B0B5EFA617288B37973A90B77B1D">2020</mods:date>
|
||||
<mods:detail id="32026E3EF207C805A40DA8C0350F3C86" type="volume">
|
||||
<mods:number id="E8CE1D8AC70471E432B354382B7F6D88">9</mods:number>
|
||||
</mods:detail>
|
||||
<mods:detail id="F8DB437675700D125169B37F971ACA39" type="issue">
|
||||
<mods:number id="08BBAD2C988799C82E21BE472CAD9585">2</mods:number>
|
||||
</mods:detail>
|
||||
<mods:extent id="3937A25BC21B004568A4BB3D2B5967AD" unit="page">
|
||||
<mods:start id="734A193C16E0653144DCF7856D5410E4">85</mods:start>
|
||||
<mods:end id="F5EE114018753A34F2A80E08DC8F1D95">104</mods:end>
|
||||
</mods:extent>
|
||||
</mods:part>
|
||||
</mods:relatedItem>
|
||||
<mods:classification id="CA482C9EA301980828EFEF778D3EE33E">journal article</mods:classification>
|
||||
<mods:identifier id="4501BC213E9D1C7995EC6AF33E903DE5" type="DOI">10.12651/JSR.2020.9.2.085</mods:identifier>
|
||||
<mods:identifier id="03E4B3E506D59C1132CF2EB508084F98" type="ISSN">2713-8615</mods:identifier>
|
||||
<mods:identifier id="E7176AE994F074695D49173D884CA47A" type="Zenodo-Dep">13140525</mods:identifier>
|
||||
</mods:mods>
|
||||
<treatment id="5E1987B8770B55012858A3052785F97C" ID-DOI="http://doi.org/10.5281/zenodo.13140533" ID-Zenodo-Dep="13140533" LSID="urn:lsid:plazi:treatment:5E1987B8770B55012858A3052785F97C" httpUri="http://treatment.plazi.org/id/5E1987B8770B55012858A3052785F97C" lastPageId="14" lastPageNumber="99" pageId="12" pageNumber="97">
|
||||
<subSubSection id="9EAA6525770B55012858A3052687F9DD" lastPageId="14" lastPageNumber="99" pageId="12" pageNumber="97" type="nomenclature">
|
||||
<paragraph id="D60F36AE770B55032858A30523ACF9C1" blockId="12.[839,1247,1565,1590]" box="[839,1247,1565,1590]" pageId="12" pageNumber="97">
|
||||
<heading id="8D4781C2770B55032858A30523ACF9C1" box="[839,1247,1565,1590]" fontSize="10" level="2" pageId="12" pageNumber="97" reason="5">
|
||||
<emphasis id="E4C4EABC770B55032858A30523ACF9C1" bold="true" box="[839,1247,1565,1590]" pageId="12" pageNumber="97">
|
||||
Description of
|
||||
<taxonomicName id="11B04D2D770B550328F1A30623C4F9C1" authority="BT" authorityName="BT" box="[1006,1207,1565,1590]" class="Betaproteobacteria" family="Oxalobacteraceae" genus="Massilia" kingdom="Bacteria" order="Burkholderiales" pageId="12" pageNumber="97" phylum="Proteobacteria" rank="species" species="agilis">
|
||||
<emphasis id="E4C4EABC770B550328F1A30623FEF9C2" bold="true" box="[1006,1165,1565,1589]" italics="true" pageId="12" pageNumber="97">Massilia agilis</emphasis>
|
||||
BT
|
||||
</taxonomicName>
|
||||
427
|
||||
</emphasis>
|
||||
</heading>
|
||||
</paragraph>
|
||||
<paragraph id="D60F36AE770B55012841A3452687F9DD" blockId="12.[839,1444,1630,1977]" lastBlockId="14.[174,779,1490,1675]" lastPageId="14" lastPageNumber="99" pageId="12" pageNumber="97">
|
||||
Cells are Gram-stain-negative, non-flagellated, and rod-shaped. Colonies are white-colored after 3 days of incubation on R2A at 25°C. In the BIOLOG GEN III, negative for pH 6,
|
||||
<subScript id="4A3434EB770B550328C6A3DE2498F920" attach="right" box="[985,1003,1727,1751]" fontSize="7" pageId="12" pageNumber="97">L-</subScript>
|
||||
aspartic acid,
|
||||
<subScript id="4A3434EB770B55032F64A3DE23FEF920" attach="right" box="[1147,1165,1727,1751]" fontSize="7" pageId="12" pageNumber="97">L-</subScript>
|
||||
glutamic acid, lincomycin, quinic acid, tetrazolium blue, L- lactic acid, D- malic acid, L- malic acid, acetic acid, aztreonam, 1% sodium lactate, rifamycin SV, D- gluconic acid, glucuronamide, D- saccharic acid, tetrazolium violet,
|
||||
<emphasis id="E4C4EABC770B55032F69A25A23F0F8AF" box="[1142,1155,1857,1880]" italics="true" pageId="12" pageNumber="97">p</emphasis>
|
||||
-hydroxy-pheylacetic acid, methyl pyruvate, citric acid,
|
||||
<emphasis id="E4C4EABC770B55032F6AA27A23F6F88F" box="[1141,1157,1889,1912]" italics="true" pageId="12" pageNumber="97">α</emphasis>
|
||||
-keto-glutaric acid, nalidixic acid,
|
||||
<emphasis id="E4C4EABC770B550328BFA29A24C3F86F" box="[928,944,1921,1944]" italics="true" pageId="12" pageNumber="97">α</emphasis>
|
||||
-hydroxy-butyric acid,
|
||||
<emphasis id="E4C4EABC770B55032FB3A29A23C8F86E" box="[1196,1211,1921,1945]" italics="true" pageId="12" pageNumber="97">β</emphasis>
|
||||
-hydroxy-D, L- butyric acid,
|
||||
<emphasis id="E4C4EABC770B5503289FA2BA24E3F84F" box="[896,912,1953,1976]" italics="true" pageId="12" pageNumber="97">α</emphasis>
|
||||
-keto butyric acid, acetoacetic acid, propionic acid, dextrin, D- maltose, D- trehalose, D- cellobiolose, gentiobiose, sucrose, D- turanose, stachyose, pH 5, D- raffinose,
|
||||
<emphasis id="E4C4EABC770A55022B8FA31A27D3F9EF" box="[144,160,1537,1560]" italics="true" pageId="13" pageNumber="98">α</emphasis>
|
||||
-D- lactose, D- melibiose,
|
||||
<emphasis id="E4C4EABC770A55022A82A31A26DFF9EE" box="[413,428,1537,1561]" italics="true" pageId="13" pageNumber="98">β</emphasis>
|
||||
-methyl-D- glucoside, D- salicin,
|
||||
<emphasis id="E4C4EABC770A55022B8FA33A27D1F9CF" box="[144,162,1569,1592]" italics="true" pageId="13" pageNumber="98">N</emphasis>
|
||||
-
|
||||
<subScript id="4A3434EB770A55022BB7A33A2676F9CE" attach="left" box="[168,261,1569,1593]" fontSize="7" pageId="13" pageNumber="98">acetyl-D-</subScript>
|
||||
glucosamine,
|
||||
<emphasis id="E4C4EABC770A55022A85A33A26DFF9CF" box="[410,428,1569,1592]" italics="true" pageId="13" pageNumber="98">N</emphasis>
|
||||
-acetyl-
|
||||
<emphasis id="E4C4EABC770A55022AE4A33A2579F9CE" box="[507,522,1569,1593]" italics="true" pageId="13" pageNumber="98">β</emphasis>
|
||||
-mannosamin,
|
||||
<emphasis id="E4C4EABC770A550229B8A33A25CAF9CF" box="[679,697,1569,1592]" italics="true" pageId="13" pageNumber="98">N</emphasis>
|
||||
-acetyl-D- galactosamin,
|
||||
<emphasis id="E4C4EABC770A55022A7AA3592604F9AE" box="[357,375,1602,1625]" italics="true" pageId="13" pageNumber="98">N</emphasis>
|
||||
-acetyl neuraminic acid, 1% NaCl, 4% NaCl, 8% NaCl,
|
||||
<emphasis id="E4C4EABC770A55022A9FA37926E3F98E" box="[384,400,1634,1657]" italics="true" pageId="13" pageNumber="98">α</emphasis>
|
||||
-D- glucose, D- mannose, D- fructose, D- galactose, 3-methyl-glucose, D- fucose, L- fucose, L- rhamnose, inosine, fusidic acid, D- serine, D- sorbitol, D- mannitol, D- arabitol, myo-inositol, glycerol, D- glucose-6-PO
|
||||
<subScript id="4A3434EB770A55022A1EA3F12679F90C" attach="left" box="[257,266,1770,1787]" fontSize="7" pageId="13" pageNumber="98">4</subScript>
|
||||
, D- fructose-6-PO
|
||||
<subScript id="4A3434EB770A55022AD7A3F126A2F90C" attach="right" box="[456,465,1770,1787]" fontSize="7" pageId="13" pageNumber="98">4</subScript>
|
||||
, D- aspartic acid, D- serine, troleandomycin, minocycline, gelatin, glyctl-L- proline, L- alanine, L- arginine, L- histidine, L- pyroglutamic acid, L- serine, guanidine HCl, niaproof 4, pectin, D- galacturonic acid, L- galactonic acid lactone, D- glucuronic acid, mucic acid, vancomycin,
|
||||
<subScript id="4A3434EB770A55022ABAA29126CBF86B" attach="right" box="[421,440,1924,1948]" fontSize="7" pageId="13" pageNumber="98">D-</subScript>
|
||||
lactic acid methyl ester, bromo-succinic acid, lithium chloride, potassium tellurite, tween 40,
|
||||
<emphasis id="E4C4EABC770A55022A19A2DE2666F82B" box="[262,277,1989,2012]" italics="true" pageId="13" pageNumber="98">γ</emphasis>
|
||||
-amino-butryric acid, formic acid, sodium butyrate and sodium bromate. In API 20NE test, positive for urease; but negative for reduction of nitrates (NO
|
||||
<subScript id="4A3434EB770A55022E47A0F12213FA0C" attach="left" box="[1368,1376,1514,1531]" fontSize="7" pageId="13" pageNumber="98">3</subScript>
|
||||
) to nitrite (NO
|
||||
<subScript id="4A3434EB770A55022886A31024D1F9EB" attach="left" box="[921,930,1547,1564]" fontSize="7" pageId="13" pageNumber="98">2</subScript>
|
||||
<superScript id="21C59BE6770A550228BDA31A24DFF9F9" attach="right" box="[930,940,1537,1550]" fontSize="7" pageId="13" pageNumber="98">-</superScript>
|
||||
), reduction of nitrates (NO
|
||||
<subScript id="4A3434EB770A55022FDAA31023BEF9EB" attach="left" box="[1221,1229,1547,1564]" fontSize="7" pageId="13" pageNumber="98">3</subScript>
|
||||
) to nitrogen (N
|
||||
<subScript id="4A3434EB770A55022E71A3102205F9EB" attach="left" box="[1390,1398,1547,1564]" fontSize="7" pageId="13" pageNumber="98">2</subScript>
|
||||
), indole production on tryptophan, glucose fermentation, arginine dihydrolase, esculin hydrolysis, gelatin hydrolysis and
|
||||
<emphasis id="E4C4EABC770A55022865A37F24FAF98B" box="[890,905,1636,1660]" italics="true" pageId="13" pageNumber="98">β</emphasis>
|
||||
-galactosidase. D- Maltose (weak) and malic acid (weak) were utilized whereas,
|
||||
<subScript id="4A3434EB770A55022F9BA39123EAF96B" attach="right" box="[1156,1177,1668,1692]" fontSize="7" pageId="13" pageNumber="98">D-</subScript>
|
||||
glucose,
|
||||
<subScript id="4A3434EB770A55022E1FA3912260F96B" attach="right" box="[1280,1299,1668,1692]" fontSize="7" pageId="13" pageNumber="98">L-</subScript>
|
||||
arabinose, D- mannose, D- mannitol,
|
||||
<emphasis id="E4C4EABC770A55022F2CA3BE2336F94B" box="[1075,1093,1701,1724]" italics="true" pageId="13" pageNumber="98">N</emphasis>
|
||||
-acetyl-D- glucosamine, potassium gluconate, capric acid, adipic acid, trisodium citrate and phenylacetic acid were not utilized. In API 32GN test, D- maltose are weakly utilized whereas, L- rhamnose,
|
||||
<emphasis id="E4C4EABC770A55022836A23D2448F8CA" box="[809,827,1830,1853]" italics="true" pageId="13" pageNumber="98">N</emphasis>
|
||||
-acetyl-glucosamine, D- ribose, inositol, D- saccharose (sucrose), itaconic acid, suberic acid, sodium malonate, sodium acetate, lactic acid,
|
||||
<subScript id="4A3434EB770A55022F48A277231BF889" attach="right" box="[1111,1128,1894,1918]" fontSize="7" pageId="13" pageNumber="98">L-</subScript>
|
||||
alanine, potassium 5-ketogluconate, glycogen, 3-hydroxybenzoic acid, L- serine, D- mannitol, D- glucose, salicin, D- melibiose, D- fucose, D- sorbitol, L- arabinose, propionic acid, capric acid, valeric acid, trisodium citrate, L- histidine, potassium 2-ketogluconate, 3-hydroxybutyric acid, 4-hydroxybenzoic acid and L- proline were not utilized.
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
<caption id="82CF6626770A55022B90A0352428FA8D" ID-DOI="http://doi.org/10.5281/zenodo.13140560" ID-Zenodo-Dep="13140560" httpUri="https://zenodo.org/record/13140560/files/figure.png" pageId="13" pageNumber="98" startId="13.[143,176,1326,1348]" targetBox="[423,1131,257,1291]" targetPageId="13" targetType="figure">
|
||||
<paragraph id="D60F36AE770A55022B90A0352428FA8D" blockId="13.[143,1413,1326,1402]" pageId="13" pageNumber="98">
|
||||
<emphasis id="E4C4EABC770A55022B90A03527A5FAB4" bold="true" box="[143,214,1326,1348]" pageId="13" pageNumber="98">Fig. 12.</emphasis>
|
||||
Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the species
|
||||
<taxonomicName id="11B04D2D770A55022AEEA05225A7FAA8" box="[497,724,1353,1375]" class="Alphaproteobacteria" family="Sphingomonadaceae" genus="Sphingomonas" kingdom="Bacteria" order="Sphingomonadales" pageId="13" pageNumber="98" phylum="Proteobacteria" rank="species" species="sanguinis">
|
||||
<emphasis id="E4C4EABC770A55022AEEA05225A7FAA8" box="[497,724,1353,1375]" italics="true" pageId="13" pageNumber="98">Sphingomonas sanguinis</emphasis>
|
||||
</taxonomicName>
|
||||
. Bootstrap values (>70%) are shown above nodes for the neighbor-joining methods. Bar: 0.01 and 0.02 substitutions per nucleotide position, respectively.
|
||||
</paragraph>
|
||||
</caption>
|
||||
<caption id="82CF6626770955012BB1A05B24EEFA7C" ID-DOI="http://doi.org/10.5281/zenodo.13140564" ID-Zenodo-Dep="13140564" httpUri="https://zenodo.org/record/13140564/files/figure.png" pageId="14" pageNumber="99" startId="14.[174,207,1344,1366]" targetBox="[395,1221,257,1310]" targetPageId="14" targetType="figure">
|
||||
<paragraph id="D60F36AE770955012BB1A05B24EEFA7C" blockId="14.[174,1444,1344,1419]" pageId="14" pageNumber="99">
|
||||
<emphasis id="E4C4EABC770955012BB1A05B2786FAA2" bold="true" box="[174,245,1344,1366]" pageId="14" pageNumber="99">Fig. 13.</emphasis>
|
||||
Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the species
|
||||
<taxonomicName id="11B04D2D77095501290AA0402471FA87" box="[533,770,1371,1392]" class="Alphaproteobacteria" family="Sphingomonadaceae" genus="Sphingomonas" kingdom="Bacteria" order="Sphingomonadales" pageId="14" pageNumber="99" phylum="Proteobacteria" rank="species" species="azotifigens">
|
||||
<emphasis id="E4C4EABC77095501290AA0402471FA87" box="[533,770,1371,1392]" italics="true" pageId="14" pageNumber="99">Sphingomonas azotifigens</emphasis>
|
||||
</taxonomicName>
|
||||
. Bootstrap values (>70%) are shown above nodes for the neighbor-joining methods. Bar: 0.01 and 0.02 substitutions per nucleotide position, respectively.
|
||||
</paragraph>
|
||||
</caption>
|
||||
<subSubSection id="9EAA6525770955012BDAA3292785F97C" pageId="14" pageNumber="99" type="description">
|
||||
<paragraph id="D60F36AE770955012BDAA3292785F97C" blockId="14.[174,779,1490,1675]" pageId="14" pageNumber="99">
|
||||
Strain BT427 (
|
||||
<emphasis id="E4C4EABC770955012A74A329260CF9BD" bold="true" box="[363,383,1586,1610]" pageId="14" pageNumber="99">=</emphasis>
|
||||
NIBRBAC000503047) was isolated from a soil sample, Ganghwa Island in
|
||||
<collectingRegion id="1474F84C77095501296CA34825BFF99C" box="[627,716,1619,1643]" country="South Korea" name="Incheon" pageId="14" pageNumber="99">Incheon</collectingRegion>
|
||||
City,
|
||||
<collectingCountry id="AEA7763E770955012BB1A36F2780F97C" box="[174,243,1652,1675]" name="South Korea" pageId="14" pageNumber="99">Korea</collectingCountry>
|
||||
.
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
</treatment>
|
||||
</document>
|
||||
190
data/5E/19/87/5E1987B8770D55032858A35124BAFA02.xml
Normal file
190
data/5E/19/87/5E1987B8770D55032858A35124BAFA02.xml
Normal file
|
|
@ -0,0 +1,190 @@
|
|||
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||||
<mods:titleInfo id="2C6FD93C6DE81B8F1D0D9484D08E841D">
|
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<mods:title id="0FE523A8452B95F117493355A2E36814">Identification of 12 radiation-resistant bacterial species in the phylum Proteobacteria new to Korea</mods:title>
|
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|
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<mods:name id="45292E8726CDA7E2E52D8C43EFE734AA" type="personal">
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||||
</mods:role>
|
||||
<mods:namePart id="73142FBB3EEC98E42E36E8660B9E4A62">Han, Joo Hyun</mods:namePart>
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||||
<mods:affiliation id="99CCA6B55111BB432C5D65732DE80CD7">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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||||
</mods:name>
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||||
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<mods:roleTerm id="DB4725A89DD5DA13CD3B25192C0AEA7D">Author</mods:roleTerm>
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|
||||
<mods:namePart id="E2F16CE5597C58A20AB0708EB3183318">Maeng, Soohyun</mods:namePart>
|
||||
<mods:affiliation id="17AB3118E09C780C7B0012C76D5A3A20">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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|
||||
<mods:namePart id="4DC2C2277D4325BBCDD796070B6A5BB3">Park, Yuna</mods:namePart>
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||||
<mods:affiliation id="0288F0F2811984061990938C3A542E12">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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||||
</mods:name>
|
||||
<mods:name id="0357E0A8B1C40C1AC6AD24A455B28271" type="personal">
|
||||
<mods:role id="B9BC83EF80A6AFB79660FD715504E709">
|
||||
<mods:roleTerm id="E38D238B8CB3836EA5D2EA83E06C6350">Author</mods:roleTerm>
|
||||
</mods:role>
|
||||
<mods:namePart id="47681867281338857FE4E00ACC8CBEF3">Lee, Sang Eun</mods:namePart>
|
||||
<mods:affiliation id="0DC0124C46523DDFEBE91D09C8B1F071">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
|
||||
</mods:name>
|
||||
<mods:name id="745F01B49A45DD6E7A46359716AFA672" type="personal">
|
||||
<mods:role id="BA545E64AD1220ED3C326E6E09D76840">
|
||||
<mods:roleTerm id="12BD4FB6C1E725D1C803135678D53ADE">Author</mods:roleTerm>
|
||||
</mods:role>
|
||||
<mods:namePart id="24E92EBC6C5FCDB0A7BA593D446E11C0">Lee, Byoung-Hee</mods:namePart>
|
||||
<mods:affiliation id="20A5F5A4D993659C93C2EBF793719319">Environmental Research Complex, National Institute of Biological Resources, Incheon 22689, Republic of Korea</mods:affiliation>
|
||||
</mods:name>
|
||||
<mods:name id="B5DC7313EE5DF42668127F006A4EE12C" type="personal">
|
||||
<mods:role id="4EBA834C87575B06962697C1D3112B3C">
|
||||
<mods:roleTerm id="C404246159805E9EF2844F22E0DBC1E5">Author</mods:roleTerm>
|
||||
</mods:role>
|
||||
<mods:namePart id="6364F5CC2CA8F2DD20B0F77478024C0F">Kim, Ki-eun Lee and Myung Kyum</mods:namePart>
|
||||
</mods:name>
|
||||
<mods:typeOfResource id="87BB97226B0BE22C8CD86B04EA6382BD">text</mods:typeOfResource>
|
||||
<mods:relatedItem id="33D964BE4BAF006CD69846D425AC8B60" type="host">
|
||||
<mods:titleInfo id="182044A02F75A13BCC8F7C4D679EA18E">
|
||||
<mods:title id="2BE490D722FDF5F39CB573F12A824221">Journal of Species Research</mods:title>
|
||||
</mods:titleInfo>
|
||||
<mods:part id="8BA9B02CD9AF4D2DA9AB725F425C732E">
|
||||
<mods:date id="9D7698F9E0A8EAB08965101EF19D1564">2020</mods:date>
|
||||
<mods:detail id="94F24D493A4D54110DF95C14124D64AC" type="volume">
|
||||
<mods:number id="50F75ABD0DC47B80DD73AF9D4EFCEF29">9</mods:number>
|
||||
</mods:detail>
|
||||
<mods:detail id="34D18BCF9799276F09E0529BCCF252EC" type="issue">
|
||||
<mods:number id="0F5D436B134953184F0ECCFE976503FD">2</mods:number>
|
||||
</mods:detail>
|
||||
<mods:extent id="5AAF6EFEE783092017AD2A9891B4358D" unit="page">
|
||||
<mods:start id="1F07966BF95166C22FB88538B4EBC270">85</mods:start>
|
||||
<mods:end id="8C25548CAC790B47166FE070E3159A2E">104</mods:end>
|
||||
</mods:extent>
|
||||
</mods:part>
|
||||
</mods:relatedItem>
|
||||
<mods:classification id="EC5B6E2AC1C934C4363DC16DA916C95B">journal article</mods:classification>
|
||||
<mods:identifier id="ECDBD09DF6233053E54DF4CDDE15ACF8" type="DOI">10.12651/JSR.2020.9.2.085</mods:identifier>
|
||||
<mods:identifier id="572AFC6EFF789149F5B2A3652DB64203" type="ISSN">2713-8615</mods:identifier>
|
||||
<mods:identifier id="3FAFC3B74701D819C8642E5140AACB8F" type="Zenodo-Dep">13140525</mods:identifier>
|
||||
</mods:mods>
|
||||
<treatment id="5E1987B8770D55032858A35124BAFA02" LSID="urn:lsid:plazi:treatment:5E1987B8770D55032858A35124BAFA02" httpUri="http://treatment.plazi.org/id/5E1987B8770D55032858A35124BAFA02" lastPageId="12" lastPageNumber="97" pageId="10" pageNumber="95">
|
||||
<subSubSection id="9EAA6525770D55032858A351254DF88F" lastPageId="12" lastPageNumber="97" pageId="10" pageNumber="95" type="nomenclature">
|
||||
<paragraph id="D60F36AE770D55052858A35122E5F995" blockId="10.[839,1430,1610,1634]" box="[839,1430,1610,1634]" pageId="10" pageNumber="95">
|
||||
<heading id="8D4781C2770D55052858A35122E5F995" box="[839,1430,1610,1634]" centered="true" fontSize="10" level="2" pageId="10" pageNumber="95" reason="5">
|
||||
<emphasis id="E4C4EABC770D55052858A35122E5F995" bold="true" box="[839,1430,1610,1634]" pageId="10" pageNumber="95">
|
||||
Description of
|
||||
<taxonomicName id="11B04D2D770D550528F1A351221DF995" authority="BT" authorityName="BT" box="[1006,1390,1610,1634]" class="Gammaproteobacteria" family="Burkholderiaceae" genus="Noviherbaspirillum" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Burkholderiales" pageId="10" pageNumber="95" phylum="Proteobacteria" rank="species" species="canariense">
|
||||
<emphasis id="E4C4EABC770D550528F1A3512237F995" bold="true" box="[1006,1348,1610,1634]" italics="true" pageId="10" pageNumber="95">Noviherbaspirillum canariense</emphasis>
|
||||
BT
|
||||
</taxonomicName>
|
||||
339
|
||||
</emphasis>
|
||||
</heading>
|
||||
</paragraph>
|
||||
<paragraph id="D60F36AE770D55032841A360254DF88F" blockId="10.[839,1444,1659,1973]" lastBlockId="12.[174,779,1501,1977]" lastPageId="12" lastPageNumber="97" pageId="10" pageNumber="95">
|
||||
Cells are Gram-stain-negative, non-flagellated, and rod-shaped. Colonies are Yellow-colored after 3 days of incubation on R2A at 25°C. In the BIOLOG GEN III, positive for pH 6,
|
||||
<subScript id="4A3434EB770D55052F10A3F92353F903" attach="right" box="[1039,1056,1756,1780]" fontSize="7" pageId="10" pageNumber="95">L-</subScript>
|
||||
aspartic acid,
|
||||
<subScript id="4A3434EB770D55052FA9A3F923B4F903" attach="right" box="[1206,1223,1756,1780]" fontSize="7" pageId="10" pageNumber="95">L-</subScript>
|
||||
glutamic acid, lincomycin, quinic acid, tetrazolium blue, L- lactic acid, D- malic acid, L- malic acid, acetic acid and aztreonam; weak positive for 1% sodium lactate, rifamycin SV, D- gluconic acid, glucuronamide, D- saccharic acid, tetrazolium violet,
|
||||
<emphasis id="E4C4EABC770D5505286DA265240CF862" box="[882,895,1918,1941]" italics="true" pageId="10" pageNumber="95">p</emphasis>
|
||||
-hydroxy-pheylacetic acid, methyl pyruvate, citric acid,
|
||||
<emphasis id="E4C4EABC770D5505289DA28524E1F842" box="[898,914,1950,1973]" italics="true" pageId="10" pageNumber="95">α</emphasis>
|
||||
-keto-glutaric acid, nalidixic acid,
|
||||
<emphasis id="E4C4EABC770D55052E18A2852264F842" box="[1287,1303,1950,1973]" italics="true" pageId="10" pageNumber="95">α</emphasis>
|
||||
-hydroxy-butyric acid,
|
||||
<emphasis id="E4C4EABC770C55042A16A338266BF9CC" box="[265,280,1571,1595]" italics="true" pageId="11" pageNumber="96">β</emphasis>
|
||||
-hydroxy-D, L- butyric acid,
|
||||
<emphasis id="E4C4EABC770C55042952A33F252EF9CC" box="[589,605,1572,1595]" italics="true" pageId="11" pageNumber="96">α</emphasis>
|
||||
-keto butyric acid, acetoacetic acid and propionic acid; but negative for dextrin, D- maltose, D- trehalose, D- cellobiolose, gentiobiose, sucrose,
|
||||
<subScript id="4A3434EB770C55042A5EA3912627F96C" attach="right" box="[321,340,1668,1691]" fontSize="7" pageId="11" pageNumber="96">D-</subScript>
|
||||
turanose, stachyose, pH 5,
|
||||
<subScript id="4A3434EB770C55042969A39125FAF96B" attach="right" box="[630,649,1668,1692]" fontSize="7" pageId="11" pageNumber="96">D-</subScript>
|
||||
raffinose,
|
||||
<emphasis id="E4C4EABC770C55042B8FA3BE27D3F94B" box="[144,160,1701,1724]" italics="true" pageId="11" pageNumber="96">α</emphasis>
|
||||
-D- lactose, D- melibiose,
|
||||
<emphasis id="E4C4EABC770C55042A82A3BF26DFF94B" box="[413,428,1700,1724]" italics="true" pageId="11" pageNumber="96">β</emphasis>
|
||||
-methyl-D- glucoside, D- salicin,
|
||||
<emphasis id="E4C4EABC770C55042B8FA3DE27D1F92B" box="[144,162,1733,1756]" italics="true" pageId="11" pageNumber="96">N</emphasis>
|
||||
-acetyl-D- glucosamine,
|
||||
<emphasis id="E4C4EABC770C55042A85A3DE26DFF92B" box="[410,428,1733,1756]" italics="true" pageId="11" pageNumber="96">N</emphasis>
|
||||
-acetyl-
|
||||
<emphasis id="E4C4EABC770C55042AE4A3DF2579F92B" box="[507,522,1732,1756]" italics="true" pageId="11" pageNumber="96">β</emphasis>
|
||||
-mannosamin,
|
||||
<emphasis id="E4C4EABC770C550429B8A3DE25CAF92B" box="[679,697,1733,1756]" italics="true" pageId="11" pageNumber="96">N</emphasis>
|
||||
-acetyl-D- galactosamin,
|
||||
<emphasis id="E4C4EABC770C55042A7AA3FE2604F90B" box="[357,375,1765,1788]" italics="true" pageId="11" pageNumber="96">N</emphasis>
|
||||
-acetyl neuraminic acid, 1% NaCl, 4% NaCl, 8% NaCl,
|
||||
<emphasis id="E4C4EABC770C55042A9FA21D26E3F8EA" box="[384,400,1798,1821]" italics="true" pageId="11" pageNumber="96">α</emphasis>
|
||||
-
|
||||
<subScript id="4A3434EB770C55042A85A21026DCF8EA" attach="none" box="[410,431,1797,1821]" fontSize="7" pageId="11" pageNumber="96">D-</subScript>
|
||||
glucose,
|
||||
<subScript id="4A3434EB770C55042909A2102558F8EB" attach="right" box="[534,555,1797,1820]" fontSize="7" pageId="11" pageNumber="96">D-</subScript>
|
||||
mannose,
|
||||
<subScript id="4A3434EB770C550429BFA21025C7F8EA" attach="right" box="[672,692,1797,1821]" fontSize="7" pageId="11" pageNumber="96">D-</subScript>
|
||||
fructose, D- galactose, 3-methyl-glucose, D- fucose, L- fucose, L- rhamnose, inosine, fusidic acid, D- serine, D- sorbitol, D- mannitol, D- arabitol, myo-inositol, glycerol, D- glucose- 6-PO
|
||||
<subScript id="4A3434EB770C55042BD8A29527A3F868" attach="left" box="[199,208,1934,1951]" fontSize="7" pageId="11" pageNumber="96">4</subScript>
|
||||
,
|
||||
<subScript id="4A3434EB770C55042BC0A2972787F869" attach="right" box="[223,244,1926,1950]" fontSize="7" pageId="11" pageNumber="96">D-</subScript>
|
||||
fructose-6-PO
|
||||
<subScript id="4A3434EB770C55042A94A29526E7F868" attach="left" box="[395,404,1934,1951]" fontSize="7" pageId="11" pageNumber="96">4</subScript>
|
||||
,
|
||||
<subScript id="4A3434EB770C55042ABCA29726C4F869" attach="right" box="[419,439,1926,1950]" fontSize="7" pageId="11" pageNumber="96">D-</subScript>
|
||||
aspartic acid,
|
||||
<subScript id="4A3434EB770C5504294FA2972510F869" attach="right" box="[592,611,1926,1950]" fontSize="7" pageId="11" pageNumber="96">D-</subScript>
|
||||
serine, troleandomycin, minocycline, gelatin, glyctl-L- proline, L- alanine, L- arginine, L- histidine, L- pyroglutamic acid, L- serine, guanidine HCl, niaproof 4, pectin, D- galacturonic acid, L- galactonic acid lactone, D- glucuronic acid, mucic acid, vancomycin,
|
||||
<subScript id="4A3434EB770C550428ECA3912375F96B" attach="right" box="[1011,1030,1668,1692]" fontSize="7" pageId="11" pageNumber="96">D-</subScript>
|
||||
lactic acid methyl ester, bromo-succinic acid, lithium chloride, potassium tellurite, tween 40,
|
||||
<emphasis id="E4C4EABC770C55042836A3DE244BF92B" box="[809,824,1733,1756]" italics="true" pageId="11" pageNumber="96">γ</emphasis>
|
||||
-amino-butryric acid, formic acid, sodium butyrate and sodium bromate. In API 20NE test, positive for potassium gluconate and malic acid; weak positive for indole production on tryptophan, esculin hydrolysis; but negative for reduction of nitrates (NO
|
||||
<subScript id="4A3434EB770C55042F4AA256232EF8A9" attach="left" box="[1109,1117,1869,1886]" fontSize="7" pageId="11" pageNumber="96">3</subScript>
|
||||
) to nitrite (NO
|
||||
<subScript id="4A3434EB770C55042FE5A2562270F8A9" attach="left" box="[1274,1283,1869,1886]" fontSize="7" pageId="11" pageNumber="96">2</subScript>
|
||||
<superScript id="21C59BE6770C55042E1CA258227EF8A7" attach="right" box="[1283,1293,1859,1872]" fontSize="7" pageId="11" pageNumber="96">-</superScript>
|
||||
), reduction of nitrates (NO
|
||||
<subScript id="4A3434EB770C550428D4A27624A7F889" attach="left" box="[971,980,1901,1918]" fontSize="7" pageId="11" pageNumber="96">3</subScript>
|
||||
) to nitrogen (N
|
||||
<subScript id="4A3434EB770C55042F62A27623F5F889" attach="right" box="[1149,1158,1901,1918]" fontSize="7" pageId="11" pageNumber="96">2</subScript>
|
||||
), glucose fermentation, arginine dihydrolase, urease, gelatin hydrolysis (weak) and adipic acid (weak) were utilized.
|
||||
<emphasis id="E4C4EABC770C55042FD0A2BD23ADF849" box="[1231,1246,1958,1982]" italics="true" pageId="11" pageNumber="96">β</emphasis>
|
||||
-Galactosidase, D- glucose, L- arabinose, D- mannose, D- mannitol,
|
||||
<emphasis id="E4C4EABC770B550329DDA0C525A7FA02" box="[706,724,1502,1525]" italics="true" pageId="12" pageNumber="97">N</emphasis>
|
||||
-acetyl-D- glucosamine, D- maltose, capric acid, trisodium citrate and phenylacetic acid were not utilized. In API 32GN test, itaconic acid, suberic acid, sodium acetate, lactic acid, propionic acid, valeric acid, 3-hydroxybutyric acid, 3-hydroxybenzoic acid, trisodium citrate and 4-hydroxybenzoic acid were utilized whereas, L- rhamnose,
|
||||
<emphasis id="E4C4EABC770B55032BB1A3DB27B3F920" box="[174,192,1728,1751]" italics="true" pageId="12" pageNumber="97">N</emphasis>
|
||||
-acetyl-glucosamine, D- ribose, inositol, D- saccharose (sucrose), D- maltose, sodium malonate, L- alanine, potassium 5-ketogluconate, glycogen, L- serine, D- mannitol, D- glucose, salicin, D- melibiose, D- fucose, D- sorbitol, L- arabinose, capric acid, L- histidine, potassium 2-ketogluconate and L- proline were not utilized.
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
<caption id="82CF6626770C55042B8FA08A245CFA2A" ID-DOI="http://doi.org/10.5281/zenodo.13140553" ID-Zenodo-Dep="13140553" httpUri="https://zenodo.org/record/13140553/files/figure.png" pageId="11" pageNumber="96" startId="11.[144,177,1425,1447]" targetBox="[408,1144,266,1398]" targetPageId="11" targetType="figure">
|
||||
<paragraph id="D60F36AE770C55042B8FA08A245CFA2A" blockId="11.[144,1414,1425,1501]" pageId="11" pageNumber="96">
|
||||
<emphasis id="E4C4EABC770C55042B8FA08A27A4FA51" bold="true" box="[144,215,1425,1447]" pageId="11" pageNumber="96">Fig. 10.</emphasis>
|
||||
Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the species
|
||||
<taxonomicName id="11B04D2D770C55042AEAA0B725E5FA36" box="[501,662,1452,1473]" class="Alphaproteobacteria" family="Rhizobiaceae" genus="Rhizobium" kingdom="Bacteria" order="Rhizobiales" pageId="11" pageNumber="96" phylum="Proteobacteria" rank="species" species="alamii">
|
||||
<emphasis id="E4C4EABC770C55042AEAA0B725E5FA36" box="[501,662,1452,1473]" italics="true" pageId="11" pageNumber="96">Rhizobium alamii</emphasis>
|
||||
</taxonomicName>
|
||||
. Bootstrap values (>70%) are shown above nodes for the neighbor-joining methods. Bar: 0.01 and 0.02 substitutions per nucleotide position, respectively.
|
||||
</paragraph>
|
||||
</caption>
|
||||
<caption id="82CF6626770B55032BB1A0502409FA60" ID-DOI="http://doi.org/10.5281/zenodo.13140558" ID-Zenodo-Dep="13140558" httpUri="https://zenodo.org/record/13140558/files/figure.png" pageId="12" pageNumber="97" startId="12.[174,207,1355,1377]" targetBox="[375,1248,260,1327]" targetPageId="12" targetType="figure">
|
||||
<paragraph id="D60F36AE770B55032BB1A0502409FA60" blockId="12.[174,1444,1355,1431]" pageId="12" pageNumber="97">
|
||||
<emphasis id="E4C4EABC770B55032BB1A0502787FA96" bold="true" box="[174,244,1355,1377]" pageId="12" pageNumber="97">Fig. 11.</emphasis>
|
||||
Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the species
|
||||
<taxonomicName id="11B04D2D770B5503290AA07D259FFA8B" box="[533,748,1382,1404]" class="Gammaproteobacteria" family="Rhodocyclaceae" genus="Oryzomicrobium" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Burkholderiales" pageId="12" pageNumber="97" phylum="Proteobacteria" rank="species" species="terrae">
|
||||
<emphasis id="E4C4EABC770B5503290AA07D259FFA8B" box="[533,748,1382,1404]" italics="true" pageId="12" pageNumber="97">Oryzomicrobium terrae</emphasis>
|
||||
</taxonomicName>
|
||||
. Bootstrap values (>70%) are shown above nodes for the neighbor-joining methods. Bar: 0.01 and 0.02 substitutions per nucleotide position, respectively.
|
||||
</paragraph>
|
||||
</caption>
|
||||
<subSubSection id="9EAA6525770B55032BDAA29A24BAFA02" pageId="12" pageNumber="97" type="description">
|
||||
<paragraph id="D60F36AE770B55032BDAA29A24BAFA02" blockId="12.[174,779,1501,1977]" lastBlockId="12.[839,969,1501,1525]" pageId="12" pageNumber="97">
|
||||
Strain BT339 (
|
||||
<emphasis id="E4C4EABC770B55032A74A29B260CF86F" bold="true" box="[363,383,1920,1944]" pageId="12" pageNumber="97">=</emphasis>
|
||||
NIBRBAC000503036) was isolated from a soil sample, Namyangju City in
|
||||
<collectingRegion id="1474F84C770B55032941A2BA2405FA02" box="[606,886,1501,1977]" country="South Korea" name="Gyeonggi" pageId="12" pageNumber="97">Gyeonggi Province</collectingRegion>
|
||||
,
|
||||
<collectingCountry id="AEA7763E770B5503289EA0C524B5FA02" box="[897,966,1502,1525]" name="South Korea" pageId="12" pageNumber="97">Korea</collectingCountry>
|
||||
.
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
</treatment>
|
||||
</document>
|
||||
180
data/5E/19/87/5E1987B8770F55052858A2472786F853.xml
Normal file
180
data/5E/19/87/5E1987B8770F55052858A2472786F853.xml
Normal file
|
|
@ -0,0 +1,180 @@
|
|||
<document id="A7753E6D56C087216F259D57ADB5B9F6" ID-DOI="10.12651/JSR.2020.9.2.085" ID-ISSN="2713-8615" ID-Zenodo-Dep="13140525" IM.bibliography_approvedBy="felipe" IM.illustrations_approvedBy="felipe" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.taxonomicNames_approvedBy="felipe" IM.treatments_approvedBy="felipe" checkinTime="1722403497596" checkinUser="felipe" docAuthor="Han, Joo Hyun, Maeng, Soohyun, Park, Yuna, Lee, Sang Eun, Lee, Byoung-Hee & Kim, Ki-eun Lee and Myung Kyum" docDate="2020" docId="5E1987B8770F55052858A2472786F853" docLanguage="en" docName="JSpeciesRes.9.2.85-104.pdf" docOrigin="Journal of Species Research 9 (2)" docStyle="DocumentStyle:4D398BFF45FF8CA9E08F546BB06AE372.2:JSpeciesRes.2012-.journal_article" docStyleId="4D398BFF45FF8CA9E08F546BB06AE372" docStyleName="JSpeciesRes.2012-.journal_article" docStyleVersion="2" docTitle="Massilia neuiana BT" docType="treatment" docVersion="2" lastPageNumber="95" masterDocId="A220FFC07707550F2B1FA51B2773FFF7" masterDocTitle="Identification of 12 radiation-resistant bacterial species in the phylum Proteobacteria new to Korea" masterLastPageNumber="104" masterPageNumber="85" pageNumber="93" updateTime="1722403955945" updateUser="ExternalLinkService" zenodo-license-document="CC-BY-4.0">
|
||||
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<mods:title id="D3382BDA4131C195E5D194E3AC76C9BA">Identification of 12 radiation-resistant bacterial species in the phylum Proteobacteria new to Korea</mods:title>
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<mods:namePart id="EA62246FE5F2F22D9E197A44758F4C0C">Han, Joo Hyun</mods:namePart>
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<mods:affiliation id="57F67F1B27BA30623F211B83B7BDCC29">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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<mods:namePart id="0B8B8F567F79BEA2323D138629693B0D">Maeng, Soohyun</mods:namePart>
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<mods:affiliation id="84B70539FFD0DF0DB6DD81FA5A355DB5">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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<mods:namePart id="775A5ABA86AFA79CE9D47D5474EEE557">Park, Yuna</mods:namePart>
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<mods:affiliation id="0E1460BBE2B387A2C5DCF7EC8A21AAEC">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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<mods:namePart id="DB600EE00AC6FE11415F0CEE7604639B">Lee, Sang Eun</mods:namePart>
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||||
<mods:affiliation id="2D1FDCB404F1BE04D7B5AEEE6534DB3C">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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|
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<mods:namePart id="EC69D3AEFC63DC123C04382DB39B845F">Lee, Byoung-Hee</mods:namePart>
|
||||
<mods:affiliation id="0BE187B45DA25F3540432EC0657B451B">Environmental Research Complex, National Institute of Biological Resources, Incheon 22689, Republic of Korea</mods:affiliation>
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</mods:name>
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</mods:role>
|
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<mods:namePart id="B72FC131D67D584D3BE07C4E86F91320">Kim, Ki-eun Lee and Myung Kyum</mods:namePart>
|
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<mods:title id="3EA6150AA34ADC13F05D1B8BB1633A74">Journal of Species Research</mods:title>
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</mods:titleInfo>
|
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<mods:part id="C67A0BCBC581FCB6768A59ED65BAD298">
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||||
<mods:date id="8304F8BAAE1813904E9F69CE93FDA085">2020</mods:date>
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<mods:number id="1E4D09B150871F57BEAA8A2D1EF8DD19">9</mods:number>
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<mods:start id="2029425AD4061E9329114271BEA175F7">85</mods:start>
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<mods:end id="6E5482B9730596B4A2D7D538E06AF4F6">104</mods:end>
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</mods:extent>
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<mods:classification id="535F71D826041B592EF5AEEAE27E3649">journal article</mods:classification>
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<mods:identifier id="87F04413E638F60016E468B6B7B31694" type="DOI">10.12651/JSR.2020.9.2.085</mods:identifier>
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<mods:identifier id="E78E7CE2E597E6E681A96DA234B8776D" type="ISSN">2713-8615</mods:identifier>
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<mods:identifier id="C54C76BF5CA98EB04788837AA8CC8B68" type="Zenodo-Dep">13140525</mods:identifier>
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<treatment id="5E1987B8770F55052858A2472786F853" ID-DOI="http://doi.org/10.5281/zenodo.13140523" ID-Zenodo-Dep="13140523" LSID="urn:lsid:plazi:treatment:5E1987B8770F55052858A2472786F853" httpUri="http://treatment.plazi.org/id/5E1987B8770F55052858A2472786F853" lastPageId="10" lastPageNumber="95" pageId="8" pageNumber="93">
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<subSubSection id="9EAA6525770F55052858A2472658F8B3" lastPageId="10" lastPageNumber="95" pageId="8" pageNumber="93" type="nomenclature">
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<paragraph id="D60F36AE770F55072858A247238CF883" blockId="8.[839,1279,1884,1908]" box="[839,1279,1884,1908]" pageId="8" pageNumber="93">
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<heading id="8D4781C2770F55072858A247238CF883" box="[839,1279,1884,1908]" fontSize="10" level="2" pageId="8" pageNumber="93" reason="5">
|
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<emphasis id="E4C4EABC770F55072858A247238CF883" bold="true" box="[839,1279,1884,1908]" pageId="8" pageNumber="93">
|
||||
Description of
|
||||
<taxonomicName id="11B04D2D770F550728F1A24723A4F883" authority="BT" authorityName="BT" box="[1006,1239,1884,1908]" class="Betaproteobacteria" family="Oxalobacteraceae" genus="Massilia" kingdom="Bacteria" order="Burkholderiales" pageId="8" pageNumber="93" phylum="Proteobacteria" rank="species" species="neuiana">
|
||||
<emphasis id="E4C4EABC770F550728F1A24723DFF883" bold="true" box="[1006,1196,1884,1908]" italics="true" pageId="8" pageNumber="93">Massilia neuiana</emphasis>
|
||||
BT
|
||||
</taxonomicName>
|
||||
239
|
||||
</emphasis>
|
||||
</heading>
|
||||
</paragraph>
|
||||
<paragraph id="D60F36AE770F55052841A2862658F8B3" blockId="8.[862,1444,1949,1973]" lastBlockId="10.[174,779,1610,1956]" lastPageId="10" lastPageNumber="95" pageId="8" pageNumber="93">
|
||||
Cells are Gram-stain-positive, non-flagellated, and rod-shaped. Colonies are pale yellow-colored after 3 days of incubation on R2A at 25°C. In the BIOLOG GEN III, positive for dextrin, D- maltose, gentiobiose, pH 6, L- rhamnose, gelatin, glyctl-L- proline, L- aspartic, L- glutamic acid, lincomycin, D- galacturonic acid, L- galactonic acid lactone, D- glucuronic acid, tetrazolium blue, D- malic acid, L- malic acid, propionic acid, acetic acid and aztreonam; weak positive for D- glucose, D- fructose, D- galactose, D- fucose, 1% sodium lactate, D- fructose-6-PO
|
||||
<subScript id="4A3434EB770E550629C2A3622595F97D" attach="left" box="[733,742,1657,1674]" fontSize="7" pageId="9" pageNumber="94">4</subScript>
|
||||
, L- histidine, pectin, glucuronamide, tetrazolium violet, tween 40,
|
||||
<emphasis id="E4C4EABC770E55062A1CA3A92661F93D" box="[259,274,1714,1738]" italics="true" pageId="9" pageNumber="94">β</emphasis>
|
||||
-hydroxy-D, L- butyric acid, acetoacetic acid and formic acid; but negative for D- trehalose, D- cellobiolose, sucrose, D- turanose, stachyose, pH 5, D- raffinose,
|
||||
<emphasis id="E4C4EABC770E55062B8FA20F27D3F8DC" box="[144,160,1812,1835]" italics="true" pageId="9" pageNumber="94">α</emphasis>
|
||||
-
|
||||
<subScript id="4A3434EB770E55062BB7A20227CFF8DC" attach="none" box="[168,188,1811,1835]" fontSize="7" pageId="9" pageNumber="94">D-</subScript>
|
||||
lactose,
|
||||
<subScript id="4A3434EB770E55062A0BA202265BF8DC" attach="right" box="[276,296,1811,1835]" fontSize="7" pageId="9" pageNumber="94">D-</subScript>
|
||||
melibiose,
|
||||
<emphasis id="E4C4EABC770E55062A82A20826DFF8DC" box="[413,428,1811,1835]" italics="true" pageId="9" pageNumber="94">β</emphasis>
|
||||
-
|
||||
<subScript id="4A3434EB770E55062AADA208256AF8DC" attach="left" box="[434,537,1811,1835]" fontSize="7" pageId="9" pageNumber="94">methyl-D-</subScript>
|
||||
glucoside,
|
||||
<subScript id="4A3434EB770E55062993A20225D3F8DC" attach="right" box="[652,672,1811,1835]" fontSize="7" pageId="9" pageNumber="94">D-</subScript>
|
||||
salicin,
|
||||
<emphasis id="E4C4EABC770E55062B8FA22F27D1F8BC" box="[144,162,1844,1867]" italics="true" pageId="9" pageNumber="94">N</emphasis>
|
||||
-acetyl-D- glucosamine,
|
||||
<emphasis id="E4C4EABC770E55062A85A22F26DFF8BC" box="[410,428,1844,1867]" italics="true" pageId="9" pageNumber="94">N</emphasis>
|
||||
-acetyl-
|
||||
<emphasis id="E4C4EABC770E55062AE4A2282579F8BC" box="[507,522,1843,1867]" italics="true" pageId="9" pageNumber="94">β</emphasis>
|
||||
-mannosamin,
|
||||
<emphasis id="E4C4EABC770E550629B8A22F25CAF8BC" box="[679,697,1844,1867]" italics="true" pageId="9" pageNumber="94">N</emphasis>
|
||||
-acetyl-D- galactosamin,
|
||||
<emphasis id="E4C4EABC770E55062A7AA24F2604F89C" box="[357,375,1876,1899]" italics="true" pageId="9" pageNumber="94">N</emphasis>
|
||||
-acetyl neuraminic acid, 1% NaCl, 4% NaCl, 8% NaCl,
|
||||
<subScript id="4A3434EB770E55062A6BA26126F4F87C" attach="right" box="[372,391,1908,1931]" fontSize="7" pageId="9" pageNumber="94">D-</subScript>
|
||||
mannose, 3-methyl-glucose,
|
||||
<subScript id="4A3434EB770E550629A4A26125BFF87B" attach="right" box="[699,716,1908,1932]" fontSize="7" pageId="9" pageNumber="94">L-</subScript>
|
||||
fucose, inosine, fusidic acid, D- serine, D- sorbitol, D- mannitol, D- arabitol, myo-inositol, glycerol, D- glucose-6-PO
|
||||
<subScript id="4A3434EB770E550629C2A2A72595F83A" attach="left" box="[733,742,1980,1997]" fontSize="7" pageId="9" pageNumber="94">4</subScript>
|
||||
, D- aspartic acid, D- serine, troleandomycin, rifamycin SV, minocycline, L- alanine, L- arginine, L- pyroglutamic acid, L- serine, guanidine HCl, niaproof 4, D- gluconic acid, mucic acid, quinic acid, D- saccharic acid, bancomycin,
|
||||
<emphasis id="E4C4EABC770E55062E52A0CA2229FA1F" box="[1357,1370,1489,1512]" italics="true" pageId="9" pageNumber="94">p</emphasis>
|
||||
-hydroxy-pheylacetic acid, methyl pyruvate, D- lactic acid methyl ester,
|
||||
<subScript id="4A3434EB770E550628ABA30C24B5F9DE" attach="right" box="[948,966,1553,1577]" fontSize="7" pageId="9" pageNumber="94">L-</subScript>
|
||||
lactic acid, citric acid,
|
||||
<emphasis id="E4C4EABC770E55062FAEA30A23B2F9DF" box="[1201,1217,1553,1576]" italics="true" pageId="9" pageNumber="94">α</emphasis>
|
||||
-keto-glutaric acid, bromo-succinic acid, nalidixic acid, lithium chloride, potassium tellurite,
|
||||
<emphasis id="E4C4EABC770E550628C3A3492498F99E" box="[988,1003,1618,1641]" italics="true" pageId="9" pageNumber="94">γ</emphasis>
|
||||
-amino-butryric acid,
|
||||
<emphasis id="E4C4EABC770E55062FD1A34923ADF99E" box="[1230,1246,1618,1641]" italics="true" pageId="9" pageNumber="94">α</emphasis>
|
||||
-hydroxy-butyric acid,
|
||||
<emphasis id="E4C4EABC770E55062861A36924FDF97E" box="[894,910,1650,1673]" italics="true" pageId="9" pageNumber="94">α</emphasis>
|
||||
-keto butyric acid, sodium butyrate and sodium bromate. In API 20NE test, positive for arginine dihydrolase, urease and esculin hydrolysis; but negative for reduction of nitrates (NO
|
||||
<subScript id="4A3434EB770E55062F2DA3C12349F91C" attach="left" box="[1074,1082,1754,1771]" fontSize="7" pageId="9" pageNumber="94">3</subScript>
|
||||
) to nitrite (NO
|
||||
<subScript id="4A3434EB770E55062FC4A3C12397F91C" attach="left" box="[1243,1252,1754,1771]" fontSize="7" pageId="9" pageNumber="94">2</subScript>
|
||||
<superScript id="21C59BE6770E55062FFCA3CB239EF92A" attach="right" box="[1251,1261,1744,1757]" fontSize="7" pageId="9" pageNumber="94">-</superScript>
|
||||
), reduction of nitrates (NO
|
||||
<subScript id="4A3434EB770E550628B7A3E124C3F8FC" attach="left" box="[936,944,1786,1803]" fontSize="7" pageId="9" pageNumber="94">3</subScript>
|
||||
) to nitrogen (N
|
||||
<subScript id="4A3434EB770E55062F4CA3E12328F8FC" attach="left" box="[1107,1115,1786,1803]" fontSize="7" pageId="9" pageNumber="94">2</subScript>
|
||||
), indole production on tryptophan, glucose fermentation, gelatin hydrolysis,
|
||||
<emphasis id="E4C4EABC770E55062E30A208224DF8DC" box="[1327,1342,1811,1835]" italics="true" pageId="9" pageNumber="94">β</emphasis>
|
||||
-galactosidase and D- maltose (weak) were utilized. D- Glucose, D- mannose, D- mannitol,
|
||||
<emphasis id="E4C4EABC770E55062F2CA24F2336F89C" box="[1075,1093,1876,1899]" italics="true" pageId="9" pageNumber="94">N</emphasis>
|
||||
-acetyl-D- glucosamine, potassium gluconate, capric acid, adipic acid, malic acid, trisodium citrate and phenylacetic acid were not utilized. In API 32GN test,
|
||||
<emphasis id="E4C4EABC770E550628C7A2AE2499F83B" box="[984,1002,1973,1996]" italics="true" pageId="9" pageNumber="94">N</emphasis>
|
||||
-acetyl-glucosamine, D- ribose, inositol, D- saccharose (sucrose), itaconic acid, suberic acid, sodium malonate, lactic acid, potassium 5-ketogluconate, 3-hydroxybenzoic acid, D- mannitol, D- glucose, salicin, D- melibiose, D- fucose, D- sorbitol, capric acid, valeric acid, trisodium citrate, L- histidine, potassium 2-ketogluconate and 4-hydroxybenzoic acid were utilized whereas, L- rhamnose, D- maltose, glycogen, L- serine and L- arabinose were not utilized.
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
<caption id="82CF6626770E55062B8EA1C5240CFADE" ID-DOI="http://doi.org/10.5281/zenodo.13140547" ID-Zenodo-Dep="13140547" httpUri="https://zenodo.org/record/13140547/files/figure.png" pageId="9" pageNumber="94" startId="9.[145,178,1246,1268]" targetBox="[384,1168,261,1211]" targetPageId="9" targetType="figure">
|
||||
<paragraph id="D60F36AE770E55062B8EA1C5240CFADE" blockId="9.[144,1414,1246,1321]" pageId="9" pageNumber="94">
|
||||
<emphasis id="E4C4EABC770E55062B8EA1C527BCFB04" bold="true" box="[145,207,1246,1268]" pageId="9" pageNumber="94">Fig. 8.</emphasis>
|
||||
Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the species
|
||||
<taxonomicName id="11B04D2D770E55062AEEA1E3259FFAFA" box="[497,748,1272,1293]" class="Betaproteobacteria" family="Burkholderiaceae" genus="Pseudomonas" kingdom="Bacteria" order="Burkholderiales" pageId="9" pageNumber="94" phylum="Proteobacteria" rank="species" species="reidholzensis">
|
||||
<emphasis id="E4C4EABC770E55062AEEA1E3259FFAFA" box="[497,748,1272,1293]" italics="true" pageId="9" pageNumber="94">Pseudomonas reidholzensis</emphasis>
|
||||
</taxonomicName>
|
||||
. Bootstrap values (>70%) are shown above nodes for the neighbor-joining methods. Bar: 0.01 and 0.02 substitutions per nucleotide position, respectively.
|
||||
</paragraph>
|
||||
</caption>
|
||||
<caption id="82CF6626770D55052BB1A0A32409F9F3" ID-DOI="http://doi.org/10.5281/zenodo.13140551" ID-Zenodo-Dep="13140551" httpUri="https://zenodo.org/record/13140551/files/figure.png" pageId="10" pageNumber="95" startId="10.[174,207,1464,1486]" targetBox="[388,1200,261,1433]" targetPageId="10" targetType="figure">
|
||||
<paragraph id="D60F36AE770D55052BB1A0A32409F9F3" blockId="10.[174,1444,1464,1540]" pageId="10" pageNumber="95">
|
||||
<emphasis id="E4C4EABC770D55052BB1A0A32798FA3A" bold="true" box="[174,235,1464,1486]" pageId="10" pageNumber="95">Fig. 9.</emphasis>
|
||||
Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the species
|
||||
<taxonomicName id="11B04D2D770D55052908A0CF2599FA1F" box="[535,746,1491,1513]" class="Alphaproteobacteria" family="Methylobacteriaceae" genus="Microvirga" kingdom="Bacteria" order="Rhizobiales" pageId="10" pageNumber="95" phylum="Proteobacteria" rank="species" species="lotononidis">
|
||||
<emphasis id="E4C4EABC770D55052908A0CF2599FA1F" box="[535,746,1491,1513]" italics="true" pageId="10" pageNumber="95">Microvirga lotononidis</emphasis>
|
||||
</taxonomicName>
|
||||
. Bootstrap values (>70%) are shown above nodes for the neighbor-joining methods. Bar: 0.01 and 0.02 substitutions per nucleotide position, respectively.
|
||||
</paragraph>
|
||||
</caption>
|
||||
<subSubSection id="9EAA6525770D55052BDAA2572786F853" pageId="10" pageNumber="95" type="description">
|
||||
<paragraph id="D60F36AE770D55052BDAA2572786F853" blockId="10.[174,779,1610,1956]" pageId="10" pageNumber="95">
|
||||
Strain BT239 (
|
||||
<emphasis id="E4C4EABC770D55052A74A257260CF893" bold="true" box="[363,383,1868,1892]" pageId="10" pageNumber="95">=</emphasis>
|
||||
NIBRBAC000503018) was isolated from a soil sample, Pocheon City in
|
||||
<collectingRegion id="1474F84C770D55052927A2772474F873" box="[568,775,1900,1924]" country="South Korea" name="Gyeonggi" pageId="10" pageNumber="95">Gyeonggi Province</collectingRegion>
|
||||
,
|
||||
<collectingCountry id="AEA7763E770D55052BB1A2962782F853" box="[174,241,1933,1956]" name="South Korea" pageId="10" pageNumber="95">Korea</collectingCountry>
|
||||
.
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
</treatment>
|
||||
</document>
|
||||
174
data/5E/19/87/5E1987B87715551D2BB1A1F62264FB33.xml
Normal file
174
data/5E/19/87/5E1987B87715551D2BB1A1F62264FB33.xml
Normal file
|
|
@ -0,0 +1,174 @@
|
|||
<document id="D743EBB2953FE5FAFDF0C4FBA167D05D" ID-DOI="10.12651/JSR.2020.9.2.085" ID-ISSN="2713-8615" ID-Zenodo-Dep="13140525" IM.bibliography_approvedBy="felipe" IM.illustrations_approvedBy="felipe" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.taxonomicNames_approvedBy="felipe" IM.treatments_approvedBy="felipe" checkinTime="1722403497596" checkinUser="felipe" docAuthor="Han, Joo Hyun, Maeng, Soohyun, Park, Yuna, Lee, Sang Eun, Lee, Byoung-Hee & Kim, Ki-eun Lee and Myung Kyum" docDate="2020" docId="5E1987B87715551D2BB1A1F62264FB33" docLanguage="en" docName="JSpeciesRes.9.2.85-104.pdf" docOrigin="Journal of Species Research 9 (2)" docStyle="DocumentStyle:4D398BFF45FF8CA9E08F546BB06AE372.2:JSpeciesRes.2012-.journal_article" docStyleId="4D398BFF45FF8CA9E08F546BB06AE372" docStyleName="JSpeciesRes.2012-.journal_article" docStyleVersion="2" docTitle="Sphingomonas azotifigens BT" docType="treatment" docVersion="2" lastPageNumber="103" masterDocId="A220FFC07707550F2B1FA51B2773FFF7" masterDocTitle="Identification of 12 radiation-resistant bacterial species in the phylum Proteobacteria new to Korea" masterLastPageNumber="104" masterPageNumber="85" pageNumber="103" updateTime="1722403955945" updateUser="ExternalLinkService" zenodo-license-document="CC-BY-4.0">
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<mods:mods id="F7E0E46476B22FA08AC726C56496D2E2" xmlns:mods="http://www.loc.gov/mods/v3">
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<mods:titleInfo id="083044D98D7BDE9790910C7DEC3BDD12">
|
||||
<mods:title id="AC1E00F78BACC65EAF9A74F783D1CAA1">Identification of 12 radiation-resistant bacterial species in the phylum Proteobacteria new to Korea</mods:title>
|
||||
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<mods:name id="C60F5D1DFA1A788F4FFF158A98A4461E" type="personal">
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||||
<mods:namePart id="D30D0981CF44EB51B170A506BBE1F13C">Han, Joo Hyun</mods:namePart>
|
||||
<mods:affiliation id="1853DCF6FFD666CD8A77AB237A1B07EB">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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</mods:role>
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||||
<mods:namePart id="3DCB93394CF41CC6139BC4911BD6CC64">Maeng, Soohyun</mods:namePart>
|
||||
<mods:affiliation id="51AE0F3697894E83BFDDE5F5C477A3D6">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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<mods:namePart id="FAE5409BD23C0E25EA2E4CEA23F86C50">Park, Yuna</mods:namePart>
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||||
<mods:affiliation id="52E2E3EAAE7969A5A93D8BDB6FD913DD">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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</mods:name>
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<mods:name id="9A43E14F4A0FBC2096A173933A6A8FAD" type="personal">
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<mods:roleTerm id="24DE288C06442337C1517FC0DC219839">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="526C44677DCFD15B9A6E10A152087E34">Lee, Sang Eun</mods:namePart>
|
||||
<mods:affiliation id="703FA99F421EF20AB49BE542AF618EEF">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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</mods:name>
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<mods:namePart id="8A9909E1BD34A2B8CB0400EF64F6BFF6">Lee, Byoung-Hee</mods:namePart>
|
||||
<mods:affiliation id="48156ADDEEAFD9360294B40D2561A449">Environmental Research Complex, National Institute of Biological Resources, Incheon 22689, Republic of Korea</mods:affiliation>
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</mods:name>
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||||
<mods:namePart id="964AF50914F17CF38427403DA550B337">Kim, Ki-eun Lee and Myung Kyum</mods:namePart>
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<mods:typeOfResource id="96ACADA3B4048E47AB13BF519A058E3C">text</mods:typeOfResource>
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<mods:title id="8C5520E0D1BE0511F02DCA1F6506A5BA">Journal of Species Research</mods:title>
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<mods:part id="A40E1504C8F00FC0BC0073DBF01ED560">
|
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<mods:date id="73A279419342F63B6344BC140650CC69">2020</mods:date>
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||||
<mods:detail id="D918A9F11AC78066C1FEAF436914EC15" type="volume">
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<mods:number id="86B0F3ADD7DE47D7F175AAE753B9B81F">9</mods:number>
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<mods:start id="E2C81FDE55F5EA2E0F1BFD491C8408EA">85</mods:start>
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<mods:end id="72A0A72FB860D388ACC1450D5620A885">104</mods:end>
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<mods:classification id="CDB7E64B2D832A920F406E0E6653E293">journal article</mods:classification>
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<mods:identifier id="50658DE9FF6D596776E7ED67FD4F70E3" type="DOI">10.12651/JSR.2020.9.2.085</mods:identifier>
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<mods:identifier id="DC1451AC56E4756308B4CAC4EAF21030" type="ISSN">2713-8615</mods:identifier>
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<mods:identifier id="A4BF7F7380E1A35C4FB97B879AC27362" type="Zenodo-Dep">13140525</mods:identifier>
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<treatment id="5E1987B87715551D2BB1A1F62264FB33" ID-DOI="http://doi.org/10.5281/zenodo.13140570" ID-Zenodo-Dep="13140570" LSID="urn:lsid:plazi:treatment:5E1987B87715551D2BB1A1F62264FB33" httpUri="http://treatment.plazi.org/id/5E1987B87715551D2BB1A1F62264FB33" lastPageNumber="103" pageId="18" pageNumber="103">
|
||||
<subSubSection id="9EAA65257715551D2BB1A1F62312FB73" pageId="18" pageNumber="103" type="nomenclature">
|
||||
<paragraph id="D60F36AE7715551D2BB1A1F625BBFAF2" blockId="18.[174,712,1261,1285]" box="[174,712,1261,1285]" pageId="18" pageNumber="103">
|
||||
<heading id="8D4781C27715551D2BB1A1F625BBFAF2" box="[174,712,1261,1285]" fontSize="10" level="2" pageId="18" pageNumber="103" reason="5">
|
||||
<emphasis id="E4C4EABC7715551D2BB1A1F625BBFAF2" bold="true" box="[174,712,1261,1285]" pageId="18" pageNumber="103">
|
||||
Description of
|
||||
<taxonomicName id="11B04D2D7715551D2A4AA1F625ECFAF2" ID-CoL="4YZML" authority="BT" authorityName="BT" box="[341,671,1261,1285]" class="Alphaproteobacteria" family="Sphingomonadaceae" genus="Sphingomonas" kingdom="Bacteria" order="Sphingomonadales" pageId="18" pageNumber="103" phylum="Proteobacteria" rank="species" species="azotifigens">
|
||||
<emphasis id="E4C4EABC7715551D2A4AA1F62506FAF2" bold="true" box="[341,629,1261,1285]" italics="true" pageId="18" pageNumber="103">Sphingomonas azotifigens</emphasis>
|
||||
BT
|
||||
</taxonomicName>
|
||||
364
|
||||
</emphasis>
|
||||
</heading>
|
||||
</paragraph>
|
||||
<paragraph id="D60F36AE7715551D2BDAA0052312FB73" blockId="18.[174,779,1310,1980]" lastBlockId="18.[839,1444,261,1221]" pageId="18" pageNumber="103">
|
||||
Cells are Gram-stain-negative, non-flagellated, and rod-shaped. Colonies are Yellow-colored after 3 days of incubation on R2A at 25°C. In the BIOLOG GEN III, positive for dextrin, D- maltose, D- cellobiolose, gentiobiose, sucrose, D- raffinose,
|
||||
<emphasis id="E4C4EABC7715551D2AA7A0BB26BBFA40" box="[440,456,1440,1463]" italics="true" pageId="18" pageNumber="103">α</emphasis>
|
||||
-D- lactose, D- melibiose,
|
||||
<emphasis id="E4C4EABC7715551D29DAA0BB25A4FA40" box="[709,727,1440,1463]" italics="true" pageId="18" pageNumber="103">N</emphasis>
|
||||
-acetyl-D- glucosamine, 1% NaCl,
|
||||
<emphasis id="E4C4EABC7715551D2AE5A0DB2579FA20" box="[506,522,1472,1495]" italics="true" pageId="18" pageNumber="103">α</emphasis>
|
||||
-D- glucose, D- mannose,
|
||||
<subScript id="4A3434EB7715551D2BB1A0FD27B0FA0F" attach="none" box="[174,195,1504,1528]" fontSize="7" pageId="18" pageNumber="103">D-</subScript>
|
||||
fructose-6-PO
|
||||
<subScript id="4A3434EB7715551D2A7AA0F3261DFA0E" attach="left" box="[357,366,1512,1529]" fontSize="7" pageId="18" pageNumber="103">4</subScript>
|
||||
,
|
||||
<subScript id="4A3434EB7715551D2A60A0FD26E7FA0F" attach="right" box="[383,404,1504,1528]" fontSize="7" pageId="18" pageNumber="103">D-</subScript>
|
||||
galactose,
|
||||
<subScript id="4A3434EB7715551D290EA0FD2557FA0F" attach="right" box="[529,548,1504,1528]" fontSize="7" pageId="18" pageNumber="103">L-</subScript>
|
||||
fucose,
|
||||
<subScript id="4A3434EB7715551D299EA0FD25E7FA0F" attach="right" box="[641,660,1504,1528]" fontSize="7" pageId="18" pageNumber="103">L-</subScript>
|
||||
rhamnose, 1% sodium lactate, D- glucose-6-PO
|
||||
<subScript id="4A3434EB7715551D2922A3132535F9EE" attach="left" box="[573,582,1544,1561]" fontSize="7" pageId="18" pageNumber="103">4</subScript>
|
||||
, troleandomycin, rifamycin SV, L- alanine, L- aspartic acid, L- glutamic acid, lincomycin, D- glucuronic acid, tetrazolium blue, nalidixic acid, potassium tellurite,
|
||||
<emphasis id="E4C4EABC7715551D2AC4A37A2699F98E" box="[475,490,1633,1657]" italics="true" pageId="18" pageNumber="103">β</emphasis>
|
||||
-
|
||||
<subScript id="4A3434EB7715551D2AEFA37A2513F980" attach="left" box="[496,608,1633,1657]" fontSize="7" pageId="18" pageNumber="103">hydroxy-D</subScript>
|
||||
,
|
||||
<subScript id="4A3434EB7715551D296FA37C25F1F98E" attach="right" box="[624,642,1633,1657]" fontSize="7" pageId="18" pageNumber="103">L-</subScript>
|
||||
butyric acid, propionic acid, acetic acid and aztreonam; weak positive for pH 6, 4% NaCl, 3-methyl-glucose, myo-inositol,
|
||||
<subScript id="4A3434EB7715551D2BB0A3D327B1F92D" attach="none" box="[175,194,1730,1754]" fontSize="7" pageId="18" pageNumber="103">D-</subScript>
|
||||
fructose-6-PO
|
||||
<subScript id="4A3434EB7715551D2A43A3D12616F92C" attach="right" box="[348,357,1738,1755]" fontSize="7" pageId="18" pageNumber="103">4</subScript>
|
||||
, gelatin,
|
||||
<subScript id="4A3434EB7715551D2AD3A3D92557F92D" attach="left" box="[460,548,1730,1754]" fontSize="7" pageId="18" pageNumber="103">glyctl-L-</subScript>
|
||||
proline, pectin,
|
||||
<subScript id="4A3434EB7715551D29CBA3D32594F92D" attach="right" box="[724,743,1730,1754]" fontSize="7" pageId="18" pageNumber="103">D-</subScript>
|
||||
galacturonic acid, L- galactonic acid lactone, glucuronamide, tetrazolium violet, L- lactic acid, citric acid, L- malic acid, tween 40,
|
||||
<emphasis id="E4C4EABC7715551D2A3EA2382642F8CD" box="[289,305,1827,1850]" italics="true" pageId="18" pageNumber="103">α</emphasis>
|
||||
-keto butyric acid and acetoacetic acid; but negative for
|
||||
<subScript id="4A3434EB7715551D2A20A2522620F8AC" attach="right" box="[319,339,1859,1883]" fontSize="7" pageId="18" pageNumber="103">D-</subScript>
|
||||
trehalose,
|
||||
<subScript id="4A3434EB7715551D2AD5A25226ACF8AD" attach="right" box="[458,479,1859,1882]" fontSize="7" pageId="18" pageNumber="103">D-</subScript>
|
||||
turanose, stachyose, pH 5,
|
||||
<emphasis id="E4C4EABC7715551D2BB1A27827CEF88C" box="[174,189,1891,1915]" italics="true" pageId="18" pageNumber="103">β</emphasis>
|
||||
-methyl-D- glucoside, D- salicin,
|
||||
<emphasis id="E4C4EABC7715551D2919A27F256BF88C" box="[518,536,1892,1915]" italics="true" pageId="18" pageNumber="103">N</emphasis>
|
||||
-acetyl-
|
||||
<emphasis id="E4C4EABC7715551D2978A2782505F88C" box="[615,630,1891,1915]" italics="true" pageId="18" pageNumber="103">β</emphasis>
|
||||
-mannosamin,
|
||||
<emphasis id="E4C4EABC7715551D2BB1A29F27B3F86C" box="[174,192,1924,1947]" italics="true" pageId="18" pageNumber="103">N</emphasis>
|
||||
-acetyl-D- galactosamin,
|
||||
<emphasis id="E4C4EABC7715551D2ADAA29F26A4F86C" box="[453,471,1924,1947]" italics="true" pageId="18" pageNumber="103">N</emphasis>
|
||||
-acetyl neuraminic acid, 8% NaCl, D- fucose, inosine, fusidic acid, D- serine, D- sorbitol, D- mannitol, D- arabitol, glycerol, D- aspartic acid, D- serine, minocycline, L- arginine, L- histidine, L- pyroglutamic acid, L- serine, guanidine HCl, niaproof 4, D- gluconic acid, mucic acid, quinic acid, D- saccharic acid, vancomycin, methyl pyruvate, D- lactic acid methyl ester,
|
||||
<emphasis id="E4C4EABC7715551D2E36A49C224AFE69" box="[1321,1337,391,414]" italics="true" pageId="18" pageNumber="103">α</emphasis>
|
||||
-keto-glutaric acid, D- malic acid, bromo-succinic acid, lithium chloride,
|
||||
<emphasis id="E4C4EABC7715551D28B3A4DC24C8FE29" box="[940,955,455,478]" italics="true" pageId="18" pageNumber="103">γ</emphasis>
|
||||
-amino-butryric acid,
|
||||
<emphasis id="E4C4EABC7715551D2FBAA4DC23C6FE29" box="[1189,1205,455,478]" italics="true" pageId="18" pageNumber="103">α</emphasis>
|
||||
-hydroxy-butyric acid, formic acid, sodium butyrate and sodium bromate. In API 20NE test, positive for
|
||||
<emphasis id="E4C4EABC7715551D2F22A71C233FFDE8" box="[1085,1100,519,543]" italics="true" pageId="18" pageNumber="103">β</emphasis>
|
||||
-galactosidase; weak positive for esculin hydrolysis; but negative for reduction of nitrates (NO
|
||||
<subScript id="4A3434EB7715551D2869A754240DFD97" attach="right" box="[886,894,591,608]" fontSize="7" pageId="18" pageNumber="103">3</subScript>
|
||||
) to nitrite (NO
|
||||
<subScript id="4A3434EB7715551D2F01A7542354FD97" attach="left" box="[1054,1063,591,608]" fontSize="7" pageId="18" pageNumber="103">2</subScript>
|
||||
<superScript id="21C59BE67715551D2F39A75D2343FDA4" attach="right" box="[1062,1072,582,595]" fontSize="7" pageId="18" pageNumber="103">-</superScript>
|
||||
), reduction of nitrates (NO
|
||||
<subScript id="4A3434EB7715551D2E4EA754222AFD97" attach="right" box="[1361,1369,591,608]" fontSize="7" pageId="18" pageNumber="103">3</subScript>
|
||||
) to nitrogen (N
|
||||
<subScript id="4A3434EB7715551D28B4A76B24C0FD76" attach="right" box="[939,947,624,641]" fontSize="7" pageId="18" pageNumber="103">2</subScript>
|
||||
, indole production on tryptophan, glucose fermentation, arginine dihydrolase, urease, gelatin hydrolysis. D- Mannitol, D- maltose, D- glucose (weak), L- arabinose (weak),
|
||||
<subScript id="4A3434EB7715551D28BFA7D424C7FD17" attach="right" box="[928,948,713,736]" fontSize="7" pageId="18" pageNumber="103">D-</subScript>
|
||||
mannose (weak), potassium gluconate (weak), adipic acid (weak) and malic acid (weak) were utilized whereas,
|
||||
<emphasis id="E4C4EABC7715551D28B2A61124CCFCD6" box="[941,959,778,801]" italics="true" pageId="18" pageNumber="103">N</emphasis>
|
||||
-acetyl-D- glucosamine, capric acid, trisodium citrate and phenylacetic acid were not utilized. In API 32GN test,
|
||||
<emphasis id="E4C4EABC7715551D28DFA65124A1FC96" box="[960,978,842,865]" italics="true" pageId="18" pageNumber="103">N</emphasis>
|
||||
-acetyl-glucosamine,
|
||||
<subScript id="4A3434EB7715551D2FADA64B23B4FC95" attach="right" box="[1202,1223,842,866]" fontSize="7" pageId="18" pageNumber="103">D-</subScript>
|
||||
saccharose (sucrose), D- maltose, D- glucose, D- melibiose, D- fucose, L- arabinose, L- rhamnose, sodium acetate, salicin, propionic acid and 4-hydroxybenzoic acid were utilized whereas, D- ribose, inositol, itaconic acid, suberic acid, sodium malonate, lactic acid, L- alanine, potassium 5-ketogluconate, glycogen, 3-hydroxybenzoic acid, L- serine, D- mannitol, D- sorbitol, capric acid, valeric acid, trisodium citrate, L- histidine, potassium 2-ketogluconate, 3-hydroxybutyric acid and L- proline were not utilized.
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
<subSubSection id="9EAA65257715551D2841A1972264FB33" pageId="18" pageNumber="103" type="description">
|
||||
<paragraph id="D60F36AE7715551D2841A1972264FB33" blockId="18.[839,1444,261,1221]" pageId="18" pageNumber="103">
|
||||
Strain BT364 (
|
||||
<emphasis id="E4C4EABC7715551D2F1BA197236BFB53" bold="true" box="[1028,1048,1164,1188]" pageId="18" pageNumber="103">=</emphasis>
|
||||
NIBRBAC000503043) was isolated from a soil sample from
|
||||
<collectingRegion id="1474F84C7715551D2F51A1B6230AFB32" box="[1102,1145,1197,1221]" country="South Korea" name="Jeju" pageId="18" pageNumber="103">Jeju</collectingRegion>
|
||||
Island,
|
||||
<collectingCountry id="AEA7763E7715551D2FD1A1B62260FB33" box="[1230,1299,1197,1220]" name="South Korea" pageId="18" pageNumber="103">Korea</collectingCountry>
|
||||
.
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
</treatment>
|
||||
</document>
|
||||
164
data/5E/19/87/5E1987B87716551D2836A1F6250DFB33.xml
Normal file
164
data/5E/19/87/5E1987B87716551D2836A1F6250DFB33.xml
Normal file
|
|
@ -0,0 +1,164 @@
|
|||
<document id="41BEAD1BC6D3DADE43C6239AF97AD57B" ID-DOI="10.12651/JSR.2020.9.2.085" ID-ISSN="2713-8615" ID-Zenodo-Dep="13140525" IM.bibliography_approvedBy="felipe" IM.illustrations_approvedBy="felipe" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.taxonomicNames_approvedBy="felipe" IM.treatments_approvedBy="felipe" checkinTime="1722403497596" checkinUser="felipe" docAuthor="Han, Joo Hyun, Maeng, Soohyun, Park, Yuna, Lee, Sang Eun, Lee, Byoung-Hee & Kim, Ki-eun Lee and Myung Kyum" docDate="2020" docId="5E1987B87716551D2836A1F6250DFB33" docLanguage="en" docName="JSpeciesRes.9.2.85-104.pdf" docOrigin="Journal of Species Research 9 (2)" docStyle="DocumentStyle:4D398BFF45FF8CA9E08F546BB06AE372.2:JSpeciesRes.2012-.journal_article" docStyleId="4D398BFF45FF8CA9E08F546BB06AE372" docStyleName="JSpeciesRes.2012-.journal_article" docStyleVersion="2" docTitle="Sphingomonas sanguinis BT" docType="treatment" docVersion="2" lastPageNumber="103" masterDocId="A220FFC07707550F2B1FA51B2773FFF7" masterDocTitle="Identification of 12 radiation-resistant bacterial species in the phylum Proteobacteria new to Korea" masterLastPageNumber="104" masterPageNumber="85" pageNumber="102" updateTime="1722403955945" updateUser="ExternalLinkService" zenodo-license-document="CC-BY-4.0">
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<mods:titleInfo id="EF6B7CE4136C6B62C454BF6302732D43">
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<mods:title id="0AB8BB98C876DD965AE2CBC52F0BAD7D">Identification of 12 radiation-resistant bacterial species in the phylum Proteobacteria new to Korea</mods:title>
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<mods:name id="8077622E4D8CE1591A225C23016CC634" type="personal">
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<mods:namePart id="FF66DC6CCF1A4D0F07388509526AEDD5">Han, Joo Hyun</mods:namePart>
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<mods:affiliation id="337F15DB494BC75FDA74AF8BD4117AB9">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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<mods:namePart id="20AA7C40A9C35182F18F43A7DC4690B8">Maeng, Soohyun</mods:namePart>
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<mods:affiliation id="502B77E3F5026FE1DF927D5A7AA509DB">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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<mods:namePart id="461B46A0AC5979E78C50C6679A899D4E">Park, Yuna</mods:namePart>
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<mods:affiliation id="2AF99573D1FCDCBEAD3FC1B8F78ADFD7">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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</mods:name>
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<mods:roleTerm id="BCF3EB04E1B3BCC058E308EA46560BA5">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="64FD1D6F70836C098AB769FE4210875A">Lee, Sang Eun</mods:namePart>
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<mods:affiliation id="65BEAB6100278D170A712A2773247CF1">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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</mods:name>
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<mods:name id="0797660D0C1733A8A2434F5838D211C3" type="personal">
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<mods:namePart id="B406E4B92345980EC8ECFB55B74F66DE">Lee, Byoung-Hee</mods:namePart>
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<mods:affiliation id="3DCC981D19C6879365CE9401D1B1ECF4">Environmental Research Complex, National Institute of Biological Resources, Incheon 22689, Republic of Korea</mods:affiliation>
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</mods:name>
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<mods:namePart id="A8A63640B80B05B6CAB9A577D69A5535">Kim, Ki-eun Lee and Myung Kyum</mods:namePart>
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<mods:typeOfResource id="276277FB01C50A34070CB6F00CD711A4">text</mods:typeOfResource>
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<mods:title id="692E70F1F10ECAEC3734504FF5CD5810">Journal of Species Research</mods:title>
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<mods:part id="E7F6B83258A2B5161C7128F2A977E88C">
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<mods:date id="F96821A281739433A738EB7F01D470AC">2020</mods:date>
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<mods:number id="213E982063AEC0529DEF3A6AF6667119">9</mods:number>
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<mods:number id="80EA4C6AD8C94C065C5146464164A805">2</mods:number>
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<mods:classification id="056B2E00134A0AC8B4F8DD793AB71408">journal article</mods:classification>
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<mods:identifier id="CDC150E5D6589EA2FED23C1336A43C12" type="DOI">10.12651/JSR.2020.9.2.085</mods:identifier>
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<mods:identifier id="6F730461548B5B4A220FD984A110F9DC" type="ISSN">2713-8615</mods:identifier>
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<mods:identifier id="9A2DEAC77BCE53A097C938138A24B1E6" type="Zenodo-Dep">13140525</mods:identifier>
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<treatment id="5E1987B87716551D2836A1F6250DFB33" ID-DOI="http://doi.org/10.5281/zenodo.13140568" ID-Zenodo-Dep="13140568" LSID="urn:lsid:plazi:treatment:5E1987B87716551D2836A1F6250DFB33" httpUri="http://treatment.plazi.org/id/5E1987B87716551D2836A1F6250DFB33" lastPageId="18" lastPageNumber="103" pageId="17" pageNumber="102">
|
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<subSubSection id="9EAA65257716551D2836A1F6253AFB73" lastPageId="18" lastPageNumber="103" pageId="17" pageNumber="102" type="nomenclature">
|
||||
<paragraph id="D60F36AE7716551E2836A1F6224AFAF2" blockId="17.[809,1337,1261,1285]" box="[809,1337,1261,1285]" pageId="17" pageNumber="102">
|
||||
<heading id="8D4781C27716551E2836A1F6224AFAF2" box="[809,1337,1261,1285]" fontSize="10" level="2" pageId="17" pageNumber="102" reason="5">
|
||||
<emphasis id="E4C4EABC7716551E2836A1F6224AFAF2" bold="true" box="[809,1337,1261,1285]" pageId="17" pageNumber="102">
|
||||
Description of
|
||||
<taxonomicName id="11B04D2D7716551E28CFA1F62263FAF2" ID-CoL="4YZNX" authority="BT" authorityName="BT" box="[976,1296,1261,1285]" class="Alphaproteobacteria" family="Sphingomonadaceae" genus="Sphingomonas" kingdom="Bacteria" order="Sphingomonadales" pageId="17" pageNumber="102" phylum="Proteobacteria" rank="species" species="sanguinis">
|
||||
<emphasis id="E4C4EABC7716551E28CFA1F62395FAF2" bold="true" box="[976,1254,1261,1285]" italics="true" pageId="17" pageNumber="102">Sphingomonas sanguinis</emphasis>
|
||||
BT
|
||||
</taxonomicName>
|
||||
346
|
||||
</emphasis>
|
||||
</heading>
|
||||
</paragraph>
|
||||
<paragraph id="D60F36AE7716551D285FA005253AFB73" blockId="17.[809,1414,1310,1980]" lastBlockId="18.[174,779,261,1221]" lastPageId="18" lastPageNumber="103" pageId="17" pageNumber="102">
|
||||
Cells are Gram-stain-negative, non-flagellated, and rod-shaped. Colonies are yellow-colored after 3 days of incubation on R2A at 25°C. In the BIOLOG GEN III, positive for D- maltose, D- trehalose, D- cellobiolose, gentiobiose, sucrose, D- turanose, stachyose, pH 6, D- raffinose,
|
||||
<emphasis id="E4C4EABC7716551E2836A0DB244AFA20" box="[809,825,1472,1495]" italics="true" pageId="17" pageNumber="102">α</emphasis>
|
||||
-D- lactose, D- melibiose,
|
||||
<emphasis id="E4C4EABC7716551E2F56A0DB232BFA2F" box="[1097,1112,1472,1496]" italics="true" pageId="17" pageNumber="102">β</emphasis>
|
||||
-methyl-D- glucoside, D- salicin,
|
||||
<emphasis id="E4C4EABC7716551E287CA0FA2406FA0F" box="[867,885,1505,1528]" italics="true" pageId="17" pageNumber="102">N</emphasis>
|
||||
-
|
||||
<subScript id="4A3434EB7716551E2862A0FB2493FA0F" attach="left" box="[893,992,1504,1528]" fontSize="7" pageId="17" pageNumber="102">acetyl-D-</subScript>
|
||||
glucosamine, 1% NaCl,
|
||||
<emphasis id="E4C4EABC7716551E2FE7A0FA227BFA0F" box="[1272,1288,1505,1528]" italics="true" pageId="17" pageNumber="102">α</emphasis>
|
||||
-
|
||||
<subScript id="4A3434EB7716551E2E0DA0FD2254FA0F" attach="none" box="[1298,1319,1504,1528]" fontSize="7" pageId="17" pageNumber="102">D-</subScript>
|
||||
glucose, D- mannose, D- fructose, D- galactose, 1% sodium lactate, rifamycin SV, gelatin, L- aspartic acid, L- glutamic acid, lincomycin, pectin, tetrazolium blue, citric acid,
|
||||
<emphasis id="E4C4EABC7716551E2E56A35A222AF9AF" box="[1353,1369,1601,1624]" italics="true" pageId="17" pageNumber="102">α</emphasis>
|
||||
-keto-glutaric acid,
|
||||
<subScript id="4A3434EB7716551E28C0A37C2481F98E" attach="right" box="[991,1010,1633,1657]" fontSize="7" pageId="17" pageNumber="102">L-</subScript>
|
||||
malic acid, nalidixic acid, tween 40,
|
||||
<emphasis id="E4C4EABC7716551E2836A39A244BF96E" box="[809,824,1665,1689]" italics="true" pageId="17" pageNumber="102">β</emphasis>
|
||||
-hydroxy-D, L- butyric acid, acetic acid and aztreonam; weak positive for
|
||||
<emphasis id="E4C4EABC7716551E28E7A3B92379F94E" box="[1016,1034,1698,1721]" italics="true" pageId="17" pageNumber="102">N</emphasis>
|
||||
-acetyl-
|
||||
<emphasis id="E4C4EABC7716551E2F7FA3B9231CF94D" box="[1120,1135,1698,1722]" italics="true" pageId="17" pageNumber="102">β</emphasis>
|
||||
-mannosamin, 4% NaCl, D- fucose, L- fucose, L- rhamnose, D- sorbitol, D- mannitol, D- arabitol, myo-inositol, glycerol, D- glucose-6-PO
|
||||
<subScript id="4A3434EB7716551E2E69A3F1220CF90C" attach="left" box="[1398,1407,1770,1787]" fontSize="7" pageId="17" pageNumber="102">4</subScript>
|
||||
, D- fructose, troleandomycin, glyctl-L- proline, L- pyroglutamic acid, L- serine, guanidine HCl, D- galacturonic acid, L- galactonic acid lactone, D- glucuronic acid, tetrazolium violet, methyl pyruvate, D- lactic acid methyl ester, bromo-succinic acid, potassium tellurite,
|
||||
<emphasis id="E4C4EABC7716551E2FF5A29F2389F86C" box="[1258,1274,1924,1947]" italics="true" pageId="17" pageNumber="102">α</emphasis>
|
||||
-keto butyric acid, acetoacetic acid, propionic acid and sodium bromate; but negative for pH 5,
|
||||
<emphasis id="E4C4EABC7715551D2AE8A41D257AFEEA" box="[503,521,262,285]" italics="true" pageId="18" pageNumber="103">N</emphasis>
|
||||
-acetyl-D- galactosamin,
|
||||
<emphasis id="E4C4EABC7715551D2BB1A43D27B3FECA" box="[174,192,294,317]" italics="true" pageId="18" pageNumber="103">N</emphasis>
|
||||
-acetyl neuraminic acid, 8% NaCl, 3-methyl-glucose, inosine, fusidic acid, D- serine, D- aspartic acid, D- serine, minocycline, L- alanine, L- arginine, L- histidine, niaproof 4, D- gluconic acid, glucuronamide, mucic acid, quinic acid, D- saccharic acid, vancomycin,
|
||||
<emphasis id="E4C4EABC7715551D2951A4BC2528FE49" box="[590,603,423,446]" italics="true" pageId="18" pageNumber="103">p</emphasis>
|
||||
-hydroxy-pheylacetic acid, L- lactic acid, D- malic acid, lithium chloride,
|
||||
<emphasis id="E4C4EABC7715551D2BB1A4F327CEFE08" box="[174,189,488,511]" italics="true" pageId="18" pageNumber="103">γ</emphasis>
|
||||
-amino-butryric acid,
|
||||
<emphasis id="E4C4EABC7715551D2AB3A4F326CFFE08" box="[428,444,488,511]" italics="true" pageId="18" pageNumber="103">α</emphasis>
|
||||
-hydroxy-butyric acid and formic acid, sodium butyrate. In API 20NE test, positive for esculin hydrolysis and
|
||||
<emphasis id="E4C4EABC7715551D2AB7A73326C4FDB7" box="[424,439,552,576]" italics="true" pageId="18" pageNumber="103">β</emphasis>
|
||||
-galactosidase; but negative for reduction of nitrates (NO
|
||||
<subScript id="4A3434EB7715551D2ADAA75426BDFD97" attach="left" box="[453,462,591,608]" fontSize="7" pageId="18" pageNumber="103">3</subScript>
|
||||
) to nitrite (NO
|
||||
<subScript id="4A3434EB7715551D2968A75425F3FD97" attach="left" box="[631,640,591,608]" fontSize="7" pageId="18" pageNumber="103">2</subScript>
|
||||
<superScript id="21C59BE67715551D299FA75D25F9FDA4" attach="right" box="[640,650,582,595]" fontSize="7" pageId="18" pageNumber="103">-</superScript>
|
||||
), reduction of nitrates (NO
|
||||
<subScript id="4A3434EB7715551D2A4DA76B2628FD76" attach="right" box="[338,347,624,641]" fontSize="7" pageId="18" pageNumber="103">3</subScript>
|
||||
) to nitrogen (N
|
||||
<subScript id="4A3434EB7715551D291AA76B257DFD76" attach="left" box="[517,526,624,641]" fontSize="7" pageId="18" pageNumber="103">2</subScript>
|
||||
), indole production on tryptophan, glucose fermentation, arginine dihydrolase, urease and gelatin hydrolysis. D- Glucose, L- arabinose,
|
||||
<subScript id="4A3434EB7715551D2BB1A7D427B7FD17" attach="none" box="[174,196,713,736]" fontSize="7" pageId="18" pageNumber="103">D-</subScript>
|
||||
mannose,
|
||||
<emphasis id="E4C4EABC7715551D2A21A7D22623FD17" box="[318,336,713,736]" italics="true" pageId="18" pageNumber="103">N</emphasis>
|
||||
-
|
||||
<subScript id="4A3434EB7715551D2A47A7D226B3FD16" attach="left" box="[344,448,713,737]" fontSize="7" pageId="18" pageNumber="103">acetyl-D-</subScript>
|
||||
glucosamine,
|
||||
<subScript id="4A3434EB7715551D2979A7D42508FD16" attach="right" box="[614,635,713,737]" fontSize="7" pageId="18" pageNumber="103">D-</subScript>
|
||||
maltose and malic acid were weakly utilized whereas, D- mannitol, potassium gluconate, capric acid, adipic acid, trisodium citrate and phenylacetic acid were not utilized. In API 32GN test,
|
||||
<subScript id="4A3434EB7715551D2A37A64B264EFC95" attach="right" box="[296,317,842,866]" fontSize="7" pageId="18" pageNumber="103">D-</subScript>
|
||||
saccharose (sucrose),
|
||||
<subScript id="4A3434EB7715551D293AA64B2549FC95" attach="right" box="[549,570,842,866]" fontSize="7" pageId="18" pageNumber="103">D-</subScript>
|
||||
maltose,
|
||||
<subScript id="4A3434EB7715551D2983A64B25C2FC95" attach="right" box="[668,689,842,866]" fontSize="7" pageId="18" pageNumber="103">D-</subScript>
|
||||
glucose, salicin, D- melibiose, L- arabinose,
|
||||
<emphasis id="E4C4EABC7715551D2905A670255FFC75" box="[538,556,875,898]" italics="true" pageId="18" pageNumber="103">N</emphasis>
|
||||
-acetyl-glucosamine, sodium acetate, trisodium citrate and 4-hydroxybenzoic acid were utilized whereas, L- rhamnose, D- ribose, inositol, itaconic acid, suberic acid, sodium malonate, lactic acid, L- alanine, potassium 5-ketogluconate, glycogen, 3-hydroxybenzoic acid, L- serine, D- mannitol, D- fucose, D- sorbitol, propionic acid, capric acid, valeric acid, L- histidine, potassium 2-ketogluconate, 3-hydroxybutyric acid and L- proline were not utilized.
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
<subSubSection id="9EAA65257715551D2BDAA197250DFB33" pageId="18" pageNumber="103" type="description">
|
||||
<paragraph id="D60F36AE7715551D2BDAA197250DFB33" blockId="18.[174,779,261,1221]" pageId="18" pageNumber="103">
|
||||
Strain BT346 (
|
||||
<emphasis id="E4C4EABC7715551D2A74A197260CFB53" bold="true" box="[363,383,1164,1188]" pageId="18" pageNumber="103">=</emphasis>
|
||||
NIBRBAC000503016) was isolated from a soil sample from
|
||||
<collectingRegion id="1474F84C7715551D2AAAA1B62693FB32" box="[437,480,1197,1221]" country="South Korea" name="Jeju" pageId="18" pageNumber="103">Jeju</collectingRegion>
|
||||
Island,
|
||||
<collectingCountry id="AEA7763E7715551D292AA1B62509FB33" box="[565,634,1197,1220]" name="South Korea" pageId="18" pageNumber="103">Korea</collectingCountry>
|
||||
.
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
</treatment>
|
||||
</document>
|
||||
168
data/5E/19/87/5E1987B87716551E2B8FA1F6238AFB33.xml
Normal file
168
data/5E/19/87/5E1987B87716551E2B8FA1F6238AFB33.xml
Normal file
|
|
@ -0,0 +1,168 @@
|
|||
<document id="CDF14DB3C014EBCED2589843F4CE1AD6" ID-DOI="10.12651/JSR.2020.9.2.085" ID-ISSN="2713-8615" ID-Zenodo-Dep="13140525" IM.bibliography_approvedBy="felipe" IM.illustrations_approvedBy="felipe" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.taxonomicNames_approvedBy="felipe" IM.treatments_approvedBy="felipe" checkinTime="1722403497596" checkinUser="felipe" docAuthor="Han, Joo Hyun, Maeng, Soohyun, Park, Yuna, Lee, Sang Eun, Lee, Byoung-Hee & Kim, Ki-eun Lee and Myung Kyum" docDate="2020" docId="5E1987B87716551E2B8FA1F6238AFB33" docLanguage="en" docName="JSpeciesRes.9.2.85-104.pdf" docOrigin="Journal of Species Research 9 (2)" docStyle="DocumentStyle:4D398BFF45FF8CA9E08F546BB06AE372.2:JSpeciesRes.2012-.journal_article" docStyleId="4D398BFF45FF8CA9E08F546BB06AE372" docStyleName="JSpeciesRes.2012-.journal_article" docStyleVersion="2" docTitle="Oryzomicrobium terrae BT" docType="treatment" docVersion="2" lastPageNumber="102" masterDocId="A220FFC07707550F2B1FA51B2773FFF7" masterDocTitle="Identification of 12 radiation-resistant bacterial species in the phylum Proteobacteria new to Korea" masterLastPageNumber="104" masterPageNumber="85" pageNumber="102" updateTime="1722403955945" updateUser="ExternalLinkService" zenodo-license-document="CC-BY-4.0">
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<mods:titleInfo id="503D6DC82238B26F820BEDC08B69BF73">
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<mods:title id="E8DBBDF35AF3271B9E5F37162A11DCEF">Identification of 12 radiation-resistant bacterial species in the phylum Proteobacteria new to Korea</mods:title>
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<mods:namePart id="3B6D424537855E354B184E77495E1052">Han, Joo Hyun</mods:namePart>
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<mods:affiliation id="19E31F43437D3D6C915E5F66F3DB180A">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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<mods:namePart id="E6D4A01D333E88ED6D7178937015AF03">Maeng, Soohyun</mods:namePart>
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<mods:affiliation id="4A7E16C164CBB41A2B1C5717BDD42CA1">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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<mods:namePart id="438A2954A8F5F5F4CF27C5F0126A3082">Park, Yuna</mods:namePart>
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<mods:affiliation id="DE6D2FD06797870397EEAD86C4474766">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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<mods:namePart id="8C3279FB3B8E3FEA83105D77F9B990C9">Lee, Sang Eun</mods:namePart>
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<mods:affiliation id="CCFB00ADF8A15607DE89A881D5018657">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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<mods:namePart id="CF272C0A8A4192FB4BE89F860C60AC58">Lee, Byoung-Hee</mods:namePart>
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<mods:affiliation id="93207E07F8DC55BA722B025D5298DE88">Environmental Research Complex, National Institute of Biological Resources, Incheon 22689, Republic of Korea</mods:affiliation>
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<mods:namePart id="C5C1FFED7E50803C402CAC0B7F30DD4C">Kim, Ki-eun Lee and Myung Kyum</mods:namePart>
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<mods:title id="040F4E4670BA509E9A40B729D22D0C79">Journal of Species Research</mods:title>
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<mods:part id="0B917366DF4F718DA63B0407DD7B08A2">
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<mods:date id="F32D392B3D7C16D3A0286428B87A4BB6">2020</mods:date>
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<mods:number id="E7B63AC36FF5B30DE173D690342E57CA">9</mods:number>
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<mods:start id="5C7435310E3416E807A432E295E42A4D">85</mods:start>
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<mods:end id="36EC4926DDC736D26EDB45F902D59852">104</mods:end>
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<mods:classification id="C67624F39116F1BB0AC66D2E7677B8EF">journal article</mods:classification>
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<mods:identifier id="5B3D4AD79A6E09B71DDF38104D7280DD" type="DOI">10.12651/JSR.2020.9.2.085</mods:identifier>
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<mods:identifier id="EE6F506423AE96C430F0940D9BD9DBF8" type="ISSN">2713-8615</mods:identifier>
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<mods:identifier id="87011721976157C9A3EF7C38F31B6A19" type="Zenodo-Dep">13140525</mods:identifier>
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<treatment id="5E1987B87716551E2B8FA1F6238AFB33" ID-DOI="http://doi.org/10.5281/zenodo.13140562" ID-Zenodo-Dep="13140562" LSID="urn:lsid:plazi:treatment:5E1987B87716551E2B8FA1F6238AFB33" httpUri="http://treatment.plazi.org/id/5E1987B87716551E2B8FA1F6238AFB33" lastPageNumber="102" pageId="17" pageNumber="102">
|
||||
<subSubSection id="9EAA65257716551E2B8FA1F62330FB73" pageId="17" pageNumber="102" type="nomenclature">
|
||||
<paragraph id="D60F36AE7716551E2B8FA1F625F8FAF2" blockId="17.[144,651,1261,1285]" box="[144,651,1261,1285]" pageId="17" pageNumber="102">
|
||||
<heading id="8D4781C27716551E2B8FA1F625F8FAF2" box="[144,651,1261,1285]" fontSize="10" level="2" pageId="17" pageNumber="102" reason="5">
|
||||
<emphasis id="E4C4EABC7716551E2B8FA1F625F8FAF2" bold="true" box="[144,651,1261,1285]" pageId="17" pageNumber="102">
|
||||
Description of
|
||||
<taxonomicName id="11B04D2D7716551E2A28A1F62511FAF2" authority="BT" authorityName="BT" box="[311,610,1261,1285]" class="Gammaproteobacteria" family="Rhodocyclaceae" genus="Oryzomicrobium" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Burkholderiales" pageId="17" pageNumber="102" phylum="Proteobacteria" rank="species" species="terrae">
|
||||
<emphasis id="E4C4EABC7716551E2A28A1F6254BFAF2" bold="true" box="[311,568,1261,1285]" italics="true" pageId="17" pageNumber="102">Oryzomicrobium terrae</emphasis>
|
||||
BT
|
||||
</taxonomicName>
|
||||
344
|
||||
</emphasis>
|
||||
</heading>
|
||||
</paragraph>
|
||||
<paragraph id="D60F36AE7716551E2BB9A0052330FB73" blockId="17.[144,749,1310,1980]" lastBlockId="17.[809,1414,261,1221]" pageId="17" pageNumber="102">
|
||||
Cells are Gram-stain-negative, flagellated, and rod-shaped. Colonies are pale yellow-colored after 3 days of incubation on R2A at 25°C. In the BIOLOG GEN III, positive for pH 6,
|
||||
<emphasis id="E4C4EABC7716551E2A53A09B262EFA60" box="[332,349,1408,1431]" italics="true" pageId="17" pageNumber="102">N</emphasis>
|
||||
-acetyl neuraminic acid, 1% NaCl, 4% NaCl, 1% sodium lactate, D- serine, glyctl-L- proline, L- alanine, L- aspartic acid, L- glutamic acid, L- histidine, L- serine, guanidine HCl, methyl pyruvate, L- lactic acid, citric acid, L- malic acid, nalidixic acid, lithium chloride, potassium tellurite, tween 40,
|
||||
<emphasis id="E4C4EABC7716551E2ABCA33A26C0F9CF" box="[419,435,1569,1592]" italics="true" pageId="17" pageNumber="102">α</emphasis>
|
||||
-hydroxy-butyric acid,
|
||||
<emphasis id="E4C4EABC7716551E29B0A33A25CCF9CF" box="[687,703,1569,1592]" italics="true" pageId="17" pageNumber="102">α</emphasis>
|
||||
-hydroxy-butyric acid,
|
||||
<emphasis id="E4C4EABC7716551E2A77A35A2604F9AE" box="[360,375,1601,1625]" italics="true" pageId="17" pageNumber="102">β</emphasis>
|
||||
-
|
||||
<subScript id="4A3434EB7716551E2A61A35A269CF9A0" attach="left" box="[382,495,1601,1625]" fontSize="7" pageId="17" pageNumber="102">hydroxy-D</subScript>
|
||||
,
|
||||
<subScript id="4A3434EB7716551E2AE0A35C2561F9AE" attach="right" box="[511,530,1601,1625]" fontSize="7" pageId="17" pageNumber="102">L-</subScript>
|
||||
butyric acid,
|
||||
<emphasis id="E4C4EABC7716551E29BAA35A25C6F9AF" box="[677,693,1601,1624]" italics="true" pageId="17" pageNumber="102">α</emphasis>
|
||||
-keto butyric acid, acetoacetic acid, propionic acid, acetic acid, formic acid, aztreonam, sodium butyrate and sodium bromate; weak positive for dextrin, D- maltose, D- trehalose,
|
||||
<subScript id="4A3434EB7716551E2BD2A3D32791F92D" attach="right" box="[205,226,1730,1754]" fontSize="7" pageId="17" pageNumber="102">D-</subScript>
|
||||
cellobiolose, gentiobiose, sucrose,
|
||||
<subScript id="4A3434EB7716551E296FA3D325F6F92E" attach="right" box="[624,645,1730,1753]" fontSize="7" pageId="17" pageNumber="102">D-</subScript>
|
||||
turanose, stachyose, D- raffinose, D- melibiose,
|
||||
<emphasis id="E4C4EABC7716551E293CA3F92541F90D" box="[547,562,1762,1786]" italics="true" pageId="17" pageNumber="102">β</emphasis>
|
||||
-methyl-D- glucoside, D- salicin,
|
||||
<emphasis id="E4C4EABC7716551E2A2DA2182637F8ED" box="[306,324,1795,1818]" italics="true" pageId="17" pageNumber="102">N</emphasis>
|
||||
-acetyl-D- glucosamine,
|
||||
<emphasis id="E4C4EABC7716551E2922A218253CF8ED" box="[573,591,1795,1818]" italics="true" pageId="17" pageNumber="102">N</emphasis>
|
||||
-acetyl-
|
||||
<emphasis id="E4C4EABC7716551E2980A21925DDF8ED" box="[671,686,1794,1818]" italics="true" pageId="17" pageNumber="102">β</emphasis>
|
||||
-mannosamin,
|
||||
<emphasis id="E4C4EABC7716551E2BE4A2382678F8CD" box="[251,267,1827,1850]" italics="true" pageId="17" pageNumber="102">α</emphasis>
|
||||
-D- glucose, D- mannose, D- fructose, D- galactose, 3-methyl-glucose,
|
||||
<subScript id="4A3434EB7716551E2A89A25226DAF8AC" attach="right" box="[406,425,1859,1883]" fontSize="7" pageId="17" pageNumber="102">D-</subScript>
|
||||
fucose,
|
||||
<subScript id="4A3434EB7716551E291FA2522560F8AC" attach="right" box="[512,531,1859,1883]" fontSize="7" pageId="17" pageNumber="102">L-</subScript>
|
||||
fucose,
|
||||
<subScript id="4A3434EB7716551E2975A252250FF8AC" attach="right" box="[618,636,1859,1883]" fontSize="7" pageId="17" pageNumber="102">L-</subScript>
|
||||
rhamnose, D- sorbitol, D- mannitol, D- arabitol, myo-inositol, glycerol, D- glucose-6-PO
|
||||
<subScript id="4A3434EB7716551E2A27A2902632F86B" attach="left" box="[312,321,1931,1948]" fontSize="7" pageId="17" pageNumber="102">4</subScript>
|
||||
, D- fructose-6-PO
|
||||
<subScript id="4A3434EB7716551E2AE2A2902575F86B" attach="left" box="[509,518,1931,1948]" fontSize="7" pageId="17" pageNumber="102">4</subScript>
|
||||
, D- serine, L- arginine, L- pyroglutamic acid, D- galacturonic acid, D- gluconic acid, D- glucuronic acid, quinic acid, D- saccharic acid, bromo-succinic acid and
|
||||
<emphasis id="E4C4EABC7716551E2F0FA43D236CFECA" box="[1040,1055,294,317]" italics="true" pageId="17" pageNumber="102">γ</emphasis>
|
||||
-amino-butryric acid; but negative for pH 5,
|
||||
<emphasis id="E4C4EABC7716551E2891A45D24EDFEAA" box="[910,926,326,349]" italics="true" pageId="17" pageNumber="102">α</emphasis>
|
||||
-D- lactose,
|
||||
<emphasis id="E4C4EABC7716551E2F0EA45D2350FEAA" box="[1041,1059,326,349]" italics="true" pageId="17" pageNumber="102">N</emphasis>
|
||||
-acetyl-D- galactosamin, 8% NaCl, inosine, fusidic acid, D- aspartic acid, troleandomycin, rifamycin SV, minocycline, gelatin, lincomycin, niaproof 4, pectin, L- galactonic acid lactone, glucuronamide, mucic acid, vancomycin, tetrazolium violet, tetrazolium blue,
|
||||
<emphasis id="E4C4EABC7716551E2836A4FC2445FE09" box="[809,822,487,510]" italics="true" pageId="17" pageNumber="102">p</emphasis>
|
||||
-hydroxy-pheylacetic acid,
|
||||
<subScript id="4A3434EB7716551E2F79A4F62308FE08" attach="right" box="[1126,1147,487,511]" fontSize="7" pageId="17" pageNumber="102">D-</subScript>
|
||||
lactic acid methyl ester,
|
||||
<emphasis id="E4C4EABC7716551E2836A713244AFDE8" box="[809,825,520,543]" italics="true" pageId="17" pageNumber="102">α</emphasis>
|
||||
-keto-glutaric acid and D- malic acid. In API 20NE test, weak positive for indole production on tryptophan and esculin hydrolysis; but negative for reduction of nitrates (NO
|
||||
<subScript id="4A3434EB7716551E2848A76B242CFD76" attach="left" box="[855,863,624,641]" fontSize="7" pageId="17" pageNumber="102">3</subScript>
|
||||
) to nitrite (NO
|
||||
<subScript id="4A3434EB7716551E28E0A76B237BFD76" attach="left" box="[1023,1032,624,641]" fontSize="7" pageId="17" pageNumber="102">2</subScript>
|
||||
<superScript id="21C59BE67716551E2F17A77D2361FD84" attach="right" box="[1032,1042,614,627]" fontSize="7" pageId="17" pageNumber="102">-</superScript>
|
||||
), reduction of nitrates (NO
|
||||
<subScript id="4A3434EB7716551E2E2DA76B2249FD76" attach="left" box="[1330,1338,624,641]" fontSize="7" pageId="17" pageNumber="102">3</subScript>
|
||||
) to nitrogen (N
|
||||
<subScript id="4A3434EB7716551E2890A78B24EBFD56" attach="left" box="[911,920,656,673]" fontSize="7" pageId="17" pageNumber="102">2</subScript>
|
||||
), glucose fermentation, arginine dihydrolase, urease, gelatin hydrolysis,
|
||||
<emphasis id="E4C4EABC7716551E2F47A7B22314FD36" box="[1112,1127,681,705]" italics="true" pageId="17" pageNumber="102">β</emphasis>
|
||||
-galactosidase. Potassium gluconate and malic acid adipic acid (weak) were utilized whereas, D- glucose, L- arabinose, D- mannose, D- mannitol,
|
||||
<emphasis id="E4C4EABC7716551E2836A6112448FCD6" box="[809,827,778,801]" italics="true" pageId="17" pageNumber="102">N</emphasis>
|
||||
-acetyl-D- glucosamine, D- maltose, capric acid, trisodium citrate and phenylacetic acid were not utilized. In API 32GN test, inositol, sodium acetate, lactic acid,
|
||||
<subScript id="4A3434EB7716551E2E3FA64B2241FC95" attach="right" box="[1312,1330,842,866]" fontSize="7" pageId="17" pageNumber="102">L-</subScript>
|
||||
alanine, L- serine, propionic acid, valeric acid, trisodium citrate, L- histidine, 3-hydroxybutyric acid were utilized whereas, L- rhamnose,
|
||||
<emphasis id="E4C4EABC7716551E28C2A6B0249CFC35" box="[989,1007,939,962]" italics="true" pageId="17" pageNumber="102">N</emphasis>
|
||||
-acetyl-glucosamine, D- ribose, D- saccharose (sucrose), D- maltose, itaconic acid, suberic acid, sodium malonate, potassium 5-ketogluconate, glycogen, 3-hydroxybenzoic acid, D- mannitol, D- glucose, salicin, D- melibiose, D- fucose, D- sorbitol, L- arabinose, capric acid, potassium 2-ketogluconate, 4-hydroxybenzoic acid and L- proline were not utilized.
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
<subSubSection id="9EAA65257716551E285FA197238AFB33" pageId="17" pageNumber="102" type="description">
|
||||
<paragraph id="D60F36AE7716551E285FA197238AFB33" blockId="17.[809,1414,261,1221]" pageId="17" pageNumber="102">
|
||||
Strain BT344 (
|
||||
<emphasis id="E4C4EABC7716551E28F9A1972489FB53" bold="true" box="[998,1018,1164,1188]" pageId="17" pageNumber="102">=</emphasis>
|
||||
NIBRBAC000503015) was isolated from a soil sample from
|
||||
<collectingRegion id="1474F84C7716551E2F2FA1B62328FB32" box="[1072,1115,1197,1221]" country="South Korea" name="Jeju" pageId="17" pageNumber="102">Jeju</collectingRegion>
|
||||
Island,
|
||||
<collectingCountry id="AEA7763E7716551E2FAFA1B62386FB33" box="[1200,1269,1197,1220]" name="South Korea" pageId="17" pageNumber="102">Korea</collectingCountry>
|
||||
.
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
</treatment>
|
||||
</document>
|
||||
165
data/5E/19/87/5E1987B87717551E2858A1F62661FB33.xml
Normal file
165
data/5E/19/87/5E1987B87717551E2858A1F62661FB33.xml
Normal file
|
|
@ -0,0 +1,165 @@
|
|||
<document id="A31B1C7F59DA1E0AC05384B0B5D0BF67" ID-DOI="10.12651/JSR.2020.9.2.085" ID-ISSN="2713-8615" ID-Zenodo-Dep="13140525" IM.bibliography_approvedBy="felipe" IM.illustrations_approvedBy="felipe" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.taxonomicNames_approvedBy="felipe" IM.treatments_approvedBy="felipe" checkinTime="1722403497596" checkinUser="felipe" docAuthor="Han, Joo Hyun, Maeng, Soohyun, Park, Yuna, Lee, Sang Eun, Lee, Byoung-Hee & Kim, Ki-eun Lee and Myung Kyum" docDate="2020" docId="5E1987B87717551E2858A1F62661FB33" docLanguage="en" docName="JSpeciesRes.9.2.85-104.pdf" docOrigin="Journal of Species Research 9 (2)" docStyle="DocumentStyle:4D398BFF45FF8CA9E08F546BB06AE372.2:JSpeciesRes.2012-.journal_article" docStyleId="4D398BFF45FF8CA9E08F546BB06AE372" docStyleName="JSpeciesRes.2012-.journal_article" docStyleVersion="2" docTitle="Rhizobium alamii BT" docType="treatment" docVersion="2" lastPageNumber="102" masterDocId="A220FFC07707550F2B1FA51B2773FFF7" masterDocTitle="Identification of 12 radiation-resistant bacterial species in the phylum Proteobacteria new to Korea" masterLastPageNumber="104" masterPageNumber="85" pageNumber="101" updateTime="1722403955945" updateUser="ExternalLinkService" zenodo-license-document="CC-BY-4.0">
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<mods:titleInfo id="ED1B891AA5E4E42B9CC37EA7D25E4C89">
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<mods:title id="216D84AE1FA51F802C237FE9FAD803CD">Identification of 12 radiation-resistant bacterial species in the phylum Proteobacteria new to Korea</mods:title>
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<mods:namePart id="5176B7560D0D4D38D19A4B4618B4B75E">Han, Joo Hyun</mods:namePart>
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<mods:affiliation id="AF3C2262E8BE9FADE12A28C57D85C6B8">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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<mods:namePart id="198E9B8A4F7D3E3040859532B0A73B21">Maeng, Soohyun</mods:namePart>
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<mods:affiliation id="54082F66E3580F26EC9E53AF5251E36C">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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<mods:namePart id="E81159D94B389D4E2EE32C946FC85649">Park, Yuna</mods:namePart>
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<mods:affiliation id="EB69626EB8D4CC20D6BCE2F9E88F7BCB">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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<mods:namePart id="EA4F4AC3618F18DB9DA9504366A0B22F">Lee, Sang Eun</mods:namePart>
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<mods:affiliation id="E483A3833B0B89514ED990350CFC7194">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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<mods:namePart id="E91277EB825ADBE20E2B32211861CE05">Lee, Byoung-Hee</mods:namePart>
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<mods:affiliation id="E0DA069148A717078543D047B4333BA0">Environmental Research Complex, National Institute of Biological Resources, Incheon 22689, Republic of Korea</mods:affiliation>
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<mods:namePart id="E496A39405D5320385A85B29CB8A035A">Kim, Ki-eun Lee and Myung Kyum</mods:namePart>
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<mods:title id="BA61BEFBA5598619219A25665DC67F61">Journal of Species Research</mods:title>
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<mods:part id="0E70E479FB2561C0A71FB0D9BF21F0CC">
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<mods:date id="E014213B69C2DBC9270A3408A3CE9146">2020</mods:date>
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<mods:detail id="E071A5C0AC0766B4D83E3995AFD102D8" type="volume">
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<mods:number id="1126D047F3E140FE845431DC16CC8AAE">9</mods:number>
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<mods:detail id="784D30776F7E6C03EC2F24D6632AFCA6" type="issue">
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<mods:number id="04B04AD2BBAA82138F2CBD1C9E5368AA">2</mods:number>
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<mods:start id="7563529AE7FAB5202D6136B0DA17B908">85</mods:start>
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<mods:end id="91DB9D2B5F76590AA540F4CC550D90D7">104</mods:end>
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<mods:classification id="DE6AA60239052D617CAF3DD1268353BC">journal article</mods:classification>
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<mods:identifier id="298036BDE5B3951C5A0700D0C29B9A9D" type="DOI">10.12651/JSR.2020.9.2.085</mods:identifier>
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<mods:identifier id="5F7C899AB5B1419D521186D32E7484A1" type="ISSN">2713-8615</mods:identifier>
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<mods:identifier id="5161D53BECE8826309D978D49886ADAF" type="Zenodo-Dep">13140525</mods:identifier>
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<treatment id="5E1987B87717551E2858A1F62661FB33" ID-DOI="http://doi.org/10.5281/zenodo.13140555" ID-Zenodo-Dep="13140555" LSID="urn:lsid:plazi:treatment:5E1987B87717551E2858A1F62661FB33" httpUri="http://treatment.plazi.org/id/5E1987B87717551E2858A1F62661FB33" lastPageId="17" lastPageNumber="102" pageId="16" pageNumber="101">
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<subSubSection id="9EAA65257717551E2858A1F62635FB93" lastPageId="17" lastPageNumber="102" pageId="16" pageNumber="101" type="nomenclature">
|
||||
<paragraph id="D60F36AE7717551F2858A1F62276FAF2" blockId="16.[839,1285,1261,1285]" box="[839,1285,1261,1285]" pageId="16" pageNumber="101">
|
||||
<heading id="8D4781C27717551F2858A1F62276FAF2" box="[839,1285,1261,1285]" fontSize="10" level="2" pageId="16" pageNumber="101" reason="5">
|
||||
<emphasis id="E4C4EABC7717551F2858A1F62276FAF2" bold="true" box="[839,1285,1261,1285]" pageId="16" pageNumber="101">
|
||||
Description of
|
||||
<taxonomicName id="11B04D2D7717551F28F1A1F623AFFAF2" ID-CoL="4SBYM" authority="BT" authorityName="BT" box="[1006,1244,1261,1285]" class="Alphaproteobacteria" family="Rhizobiaceae" genus="Rhizobium" kingdom="Bacteria" order="Rhizobiales" pageId="16" pageNumber="101" phylum="Proteobacteria" rank="species" species="alamii">
|
||||
<emphasis id="E4C4EABC7717551F28F1A1F623C0FAF2" bold="true" box="[1006,1203,1261,1285]" italics="true" pageId="16" pageNumber="101">Rhizobium alamii</emphasis>
|
||||
BT
|
||||
</taxonomicName>
|
||||
338
|
||||
</emphasis>
|
||||
</heading>
|
||||
</paragraph>
|
||||
<paragraph id="D60F36AE7717551E2841A0052635FB93" blockId="16.[839,1444,1310,1980]" lastBlockId="17.[144,749,261,1221]" lastPageId="17" lastPageNumber="102" pageId="16" pageNumber="101">
|
||||
Cells are Gram-stain-negative, non-flagellated, and rod-shaped. Colonies are white-colored after 3 days of incubation on R2A at 25°C. In the BIOLOG GEN III positive for D- maltose, D- trehalose, D- cellobiolose, gentiobiose, sucrose, D- turanose, pH 6,
|
||||
<emphasis id="E4C4EABC7717551F2F85A0BB23D9FA40" box="[1178,1194,1440,1463]" italics="true" pageId="16" pageNumber="101">α</emphasis>
|
||||
-D- lactose, D- melibiose,
|
||||
<emphasis id="E4C4EABC7717551F2858A0DB242AFA20" box="[839,857,1472,1495]" italics="true" pageId="16" pageNumber="101">N</emphasis>
|
||||
-acetyl-D- glucosamine,
|
||||
<emphasis id="E4C4EABC7717551F2F7DA0DB2307FA20" box="[1122,1140,1472,1495]" italics="true" pageId="16" pageNumber="101">N</emphasis>
|
||||
-acetyl-
|
||||
<emphasis id="E4C4EABC7717551F2FD5A0DB23AAFA2F" box="[1226,1241,1472,1496]" italics="true" pageId="16" pageNumber="101">β</emphasis>
|
||||
-mannosamin, 1% NaCl,
|
||||
<emphasis id="E4C4EABC7717551F2890A0FA24ECFA0F" box="[911,927,1505,1528]" italics="true" pageId="16" pageNumber="101">α</emphasis>
|
||||
-
|
||||
<subScript id="4A3434EB7717551F28B6A0FD24CEFA0F" attach="none" box="[937,957,1504,1528]" fontSize="7" pageId="16" pageNumber="101">D-</subScript>
|
||||
glucose,
|
||||
<subScript id="4A3434EB7717551F2F3EA0FD2346FA00" attach="right" box="[1057,1077,1504,1527]" fontSize="7" pageId="16" pageNumber="101">D-</subScript>
|
||||
mannose,
|
||||
<subScript id="4A3434EB7717551F2FB9A0FD23C8FA0F" attach="right" box="[1190,1211,1504,1528]" fontSize="7" pageId="16" pageNumber="101">D-</subScript>
|
||||
fructose,
|
||||
<subScript id="4A3434EB7717551F2E3CA0FD2244FA0F" attach="right" box="[1315,1335,1504,1528]" fontSize="7" pageId="16" pageNumber="101">D-</subScript>
|
||||
galactose, L- fucose, L- rhamnose, 1% sodium lactate, D- mannitol, D- arabitol, myo-inositol, glycerol, glycerol, rifamycin SV, L- glutamic acid, lincomycin, quinic acid, tetrazolium violet, tetrazolium blue, methyl pyruvate, L- malic acid, nalidixic acid, potassium tellurite and acetic acid; weak positive for dextrin, D- raffinose,
|
||||
<emphasis id="E4C4EABC7717551F2FADA3B923B2F94D" box="[1202,1217,1698,1722]" italics="true" pageId="16" pageNumber="101">β</emphasis>
|
||||
-methyl-D- glucoside,
|
||||
<subScript id="4A3434EB7717551F2858A3D3242EF92D" attach="none" box="[839,861,1730,1754]" fontSize="7" pageId="16" pageNumber="101">D-</subScript>
|
||||
salicin,
|
||||
<emphasis id="E4C4EABC7717551F28A6A3D924B8F92E" box="[953,971,1730,1753]" italics="true" pageId="16" pageNumber="101">N</emphasis>
|
||||
-
|
||||
<subScript id="4A3434EB7717551F28CCA3D92345F92D" attach="left" box="[979,1078,1730,1754]" fontSize="7" pageId="16" pageNumber="101">acetyl-D-</subScript>
|
||||
galactosamin,
|
||||
<emphasis id="E4C4EABC7717551F2FC2A3D9239CF92E" box="[1245,1263,1730,1753]" italics="true" pageId="16" pageNumber="101">N</emphasis>
|
||||
-acetyl
|
||||
<emphasis id="E4C4EABC7717551F2E5AA3D92224F92E" box="[1349,1367,1730,1753]" italics="true" pageId="16" pageNumber="101">N</emphasis>
|
||||
-acetyl neuraminic acid, D- fucose, D- sorbitol, glycyl-L- proline, L- alanine, L- aspartic acid, L- histidine, L- serine, pectin, D- glucuronic acid, D- malic acid, bromo-succinic acid, acetoacetic acid, formic acid and aztreonam; but negative for stachyose, pH 5, 4% NaCl, 8% NaCl, 3-methyl-glucose, inosine, fusidic acid, D- serine, D- glucose-6-PO
|
||||
<subScript id="4A3434EB7717551F2E8BA29022EEF86B" attach="left" box="[1428,1437,1931,1948]" fontSize="7" pageId="16" pageNumber="101">4</subScript>
|
||||
, D- fructose-6-PO
|
||||
<subScript id="4A3434EB7717551F28ECA2B0248FF84B" attach="left" box="[1011,1020,1963,1980]" fontSize="7" pageId="16" pageNumber="101">4</subScript>
|
||||
, D- aspartic acid, D- serine, minocycline, gelatin, L- arginine, L- pyroglutamic acid, guanidine HCl, niaproof 4, D- galacturonic acid, L- galactonic acid lactone, D- gluconic acid, glucuronamide, mucic acid, D- saccharic acid, vancomycin,
|
||||
<emphasis id="E4C4EABC7716551E2A7FA47D261EFE8A" box="[352,365,358,381]" italics="true" pageId="17" pageNumber="102">p</emphasis>
|
||||
-hydroxy-pheylacetic acid,
|
||||
<subScript id="4A3434EB7716551E2984A47725C3FE89" attach="right" box="[667,688,358,382]" fontSize="7" pageId="17" pageNumber="102">D-</subScript>
|
||||
lactic acid methyl ester, L- lactic acid, citric acid,
|
||||
<emphasis id="E4C4EABC7716551E2950A49C252CFE69" box="[591,607,391,414]" italics="true" pageId="17" pageNumber="102">α</emphasis>
|
||||
-keto-glutaric acid, lithium chloride, tween 40,
|
||||
<emphasis id="E4C4EABC7716551E2AE5A4BC257AFE49" box="[506,521,423,446]" italics="true" pageId="17" pageNumber="102">γ</emphasis>
|
||||
-amino-butryric acid,
|
||||
<emphasis id="E4C4EABC7716551E2B8FA4DC27D3FE29" box="[144,160,455,478]" italics="true" pageId="17" pageNumber="102">α</emphasis>
|
||||
-hydroxy-butyric acid,
|
||||
<emphasis id="E4C4EABC7716551E2AB5A4DC26CAFE28" box="[426,441,455,479]" italics="true" pageId="17" pageNumber="102">β</emphasis>
|
||||
-hydroxy-D, L- butyric acid,
|
||||
<emphasis id="E4C4EABC7716551E2B8FA4F327D3FE08" box="[144,160,488,511]" italics="true" pageId="17" pageNumber="102">α</emphasis>
|
||||
-keto butyric acid, propionic acid, sodium butyrate and sodium bromate. In API 20NE test, positive for esculin hydrolysis; weak positive for
|
||||
<emphasis id="E4C4EABC7716551E2ACDA7332692FDB7" box="[466,481,552,576]" italics="true" pageId="17" pageNumber="102">β</emphasis>
|
||||
-galactosidase; but negative for reduction of nitrates (NO
|
||||
<subScript id="4A3434EB7716551E2AFAA754269EFD97" attach="left" box="[485,493,591,608]" fontSize="7" pageId="17" pageNumber="102">3</subScript>
|
||||
) to nitrogen (N
|
||||
<subScript id="4A3434EB7716551E2992A75425E6FD97" attach="left" box="[653,661,591,608]" fontSize="7" pageId="17" pageNumber="102">2</subScript>
|
||||
), indole production on tryptophan, glucose fermentation, arginine dihydrolase, urease, gelatin hydrolysis. D- Glucose L- arabinose, D- mannose, D- mannitol, D- maltose and malic acid,
|
||||
<emphasis id="E4C4EABC7716551E2B8FA7D227D1FD17" box="[144,162,713,736]" italics="true" pageId="17" pageNumber="102">N</emphasis>
|
||||
-
|
||||
<subScript id="4A3434EB7716551E2BB7A7D22675FD16" attach="left" box="[168,262,713,737]" fontSize="7" pageId="17" pageNumber="102">acetyl-D-</subScript>
|
||||
glucosamine (weak) were utilized; but potassium gluconate, capric acid, adipic acid, trisodium citrate and phenylacetic acid were not utilized. In API 32 GN test, glycogen, salicin, D- fucose, D- sorbitol, 4-hydroxybenzoic acid,
|
||||
<subScript id="4A3434EB7716551E2A3FA64B2641FC95" attach="right" box="[288,306,842,866]" fontSize="7" pageId="17" pageNumber="102">L-</subScript>
|
||||
rhamnose,
|
||||
<emphasis id="E4C4EABC7716551E2AB9A65126CBFC96" box="[422,440,842,865]" italics="true" pageId="17" pageNumber="102">N</emphasis>
|
||||
-acetyl-glucosamine, inositol, D- saccharose (sucrose), D- maltose, L- serine, D- mannitol, salicin and D- sorbitol were utilized whereas, D- ribose, itaconic acid, suberic acid, sodium malonate, sodium acetate, lactic acid,
|
||||
<subScript id="4A3434EB7716551E2A4EA6CA2617FC14" attach="right" box="[337,356,971,995]" fontSize="7" pageId="17" pageNumber="102">L-</subScript>
|
||||
alanine, potassium 5-ketogluconate, 3-hydroxybenzoic acid, L- serine, propionic acid, capric acid, valeric acid, trisodium citrate, L- histidine, potassium 2-ketogluconate, 3-hydroxybutyric acid and L- proline were not utilized.
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
<subSubSection id="9EAA65257716551E2BB9A1772661FB33" pageId="17" pageNumber="102" type="description">
|
||||
<paragraph id="D60F36AE7716551E2BB9A1772661FB33" blockId="17.[144,749,261,1221]" pageId="17" pageNumber="102">
|
||||
Strain BT338 (
|
||||
<emphasis id="E4C4EABC7716551E2A53A1772613FB73" bold="true" box="[332,352,1132,1156]" pageId="17" pageNumber="102">=</emphasis>
|
||||
NIBRBAC000503035) was isolated from a soil sample, Uijeongbu City in
|
||||
<collectingRegion id="1474F84C7716551E2921A19727CCFB32" country="South Korea" name="Gyeonggi" pageId="17" pageNumber="102">Gyeonggi Province</collectingRegion>
|
||||
,
|
||||
<collectingCountry id="AEA7763E7716551E2BD6A1B6267DFB33" box="[201,270,1197,1220]" name="South Korea" pageId="17" pageNumber="102">Korea</collectingCountry>
|
||||
.
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
</treatment>
|
||||
</document>
|
||||
166
data/5E/19/87/5E1987B87717551F2BB1A1D624BAFB33.xml
Normal file
166
data/5E/19/87/5E1987B87717551F2BB1A1D624BAFB33.xml
Normal file
|
|
@ -0,0 +1,166 @@
|
|||
<document id="5695613654987CC3F8EB79FE0C539B75" ID-DOI="10.12651/JSR.2020.9.2.085" ID-ISSN="2713-8615" ID-Zenodo-Dep="13140525" IM.bibliography_approvedBy="felipe" IM.illustrations_approvedBy="felipe" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.taxonomicNames_approvedBy="felipe" IM.treatments_approvedBy="felipe" checkinTime="1722403497596" checkinUser="felipe" docAuthor="Han, Joo Hyun, Maeng, Soohyun, Park, Yuna, Lee, Sang Eun, Lee, Byoung-Hee & Kim, Ki-eun Lee and Myung Kyum" docDate="2020" docId="5E1987B87717551F2BB1A1D624BAFB33" docLanguage="en" docName="JSpeciesRes.9.2.85-104.pdf" docOrigin="Journal of Species Research 9 (2)" docStyle="DocumentStyle:4D398BFF45FF8CA9E08F546BB06AE372.2:JSpeciesRes.2012-.journal_article" docStyleId="4D398BFF45FF8CA9E08F546BB06AE372" docStyleName="JSpeciesRes.2012-.journal_article" docStyleVersion="2" docTitle="Microvirga lotononidis BT" docType="treatment" docVersion="2" lastPageNumber="101" masterDocId="A220FFC07707550F2B1FA51B2773FFF7" masterDocTitle="Identification of 12 radiation-resistant bacterial species in the phylum Proteobacteria new to Korea" masterLastPageNumber="104" masterPageNumber="85" pageNumber="101" updateTime="1722403955945" updateUser="ExternalLinkService" zenodo-license-document="CC-BY-4.0">
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<mods:titleInfo id="7E91CA02C6C4BB28063B209A0B6FD4C6">
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<mods:title id="7FEC02AD90CB91ED130846428F67A409">Identification of 12 radiation-resistant bacterial species in the phylum Proteobacteria new to Korea</mods:title>
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<mods:namePart id="F248CB0599218497B2A21D291FC99B7C">Han, Joo Hyun</mods:namePart>
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<mods:affiliation id="E70106A00301139C044A1D83DDEC1719">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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<mods:namePart id="5AD55CEA89FABC0754BF862C32B3754F">Maeng, Soohyun</mods:namePart>
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<mods:affiliation id="17CDD09DB30E1749E626A8F8C7EB4860">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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<mods:namePart id="CB3D8C3F335B231C7CDD7057361B34D8">Park, Yuna</mods:namePart>
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<mods:affiliation id="1D3855C648AADBADC48A70CF0185B935">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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<mods:namePart id="88A170CE8E241A0B5EBD1B3CDD9F34D6">Lee, Sang Eun</mods:namePart>
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<mods:affiliation id="26E1DEDE527AB4480BCDB4DA2594CEAD">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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<mods:namePart id="F67322C18F41B1F355DDEBF3ACD6A1A0">Lee, Byoung-Hee</mods:namePart>
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<mods:affiliation id="2C378154E39C84558C437C02B3A4AF91">Environmental Research Complex, National Institute of Biological Resources, Incheon 22689, Republic of Korea</mods:affiliation>
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</mods:name>
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<mods:namePart id="613CD39F7E23B9270EA774D28F15E7C5">Kim, Ki-eun Lee and Myung Kyum</mods:namePart>
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<mods:title id="9F11F4DA5F53D308137F53BC5841B20E">Journal of Species Research</mods:title>
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<mods:part id="3B1BA21A4F78B072177C913DF3C626E6">
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<mods:date id="E776B618A804063A215B450FBFAA5D94">2020</mods:date>
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<mods:number id="B5593C1F2CD81A66AF6BF7D309800767">9</mods:number>
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<mods:number id="9CD5FFB48F30D84ADCABDC8AAA35C7C1">2</mods:number>
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<mods:start id="B14B8820D20A0107524409B25D92B530">85</mods:start>
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<mods:end id="B9161D4F28544484AD306AEEBEC5DB3A">104</mods:end>
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<mods:classification id="94E9480CD3D77ECDDFA3C035464F2932">journal article</mods:classification>
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<mods:identifier id="CB908DE792B88E5153B2A3EDA06A16D7" type="DOI">10.12651/JSR.2020.9.2.085</mods:identifier>
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<mods:identifier id="85188BB36826EADA054CA920E638DC27" type="ISSN">2713-8615</mods:identifier>
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<mods:identifier id="D61CF09BB99B40162D6D225326385CFF" type="Zenodo-Dep">13140525</mods:identifier>
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<treatment id="5E1987B87717551F2BB1A1D624BAFB33" ID-DOI="http://doi.org/10.5281/zenodo.13140545" ID-Zenodo-Dep="13140545" LSID="urn:lsid:plazi:treatment:5E1987B87717551F2BB1A1D624BAFB33" httpUri="http://treatment.plazi.org/id/5E1987B87717551F2BB1A1D624BAFB33" lastPageNumber="101" pageId="16" pageNumber="101">
|
||||
<subSubSection id="9EAA65257717551F2BB1A1D623ABFB93" pageId="16" pageNumber="101" type="nomenclature">
|
||||
<paragraph id="D60F36AE7717551F2BB1A1D625D6FB12" blockId="16.[174,677,1229,1253]" box="[174,677,1229,1253]" pageId="16" pageNumber="101">
|
||||
<heading id="8D4781C27717551F2BB1A1D625D6FB12" box="[174,677,1229,1253]" fontSize="10" level="2" pageId="16" pageNumber="101" reason="5">
|
||||
<emphasis id="E4C4EABC7717551F2BB1A1D625D6FB12" bold="true" box="[174,677,1229,1253]" pageId="16" pageNumber="101">
|
||||
Description of
|
||||
<taxonomicName id="11B04D2D7717551F2A4AA1D6250FFB12" authority="BT" authorityName="BT" box="[341,636,1229,1253]" class="Alphaproteobacteria" family="Methylobacteriaceae" genus="Microvirga" kingdom="Bacteria" order="Rhizobiales" pageId="16" pageNumber="101" phylum="Proteobacteria" rank="species" species="lotononidis">
|
||||
<emphasis id="E4C4EABC7717551F2A4AA1D62521FB12" bold="true" box="[341,594,1229,1253]" italics="true" pageId="16" pageNumber="101">Microvirga lotononidis</emphasis>
|
||||
BT
|
||||
</taxonomicName>
|
||||
250
|
||||
</emphasis>
|
||||
</heading>
|
||||
</paragraph>
|
||||
<paragraph id="D60F36AE7717551F2BDAA1E523ABFB93" blockId="16.[174,779,1278,1980]" lastBlockId="16.[839,1444,261,1221]" pageId="16" pageNumber="101">
|
||||
Cells are Gram-stain-negative, non-flagellated, and rod-shaped. Colonies are white-colored after 3 days of incubation on R2A at 25°C. In the BIOLOG GEN III, positive for tetrazolium violet; weak positive for pH 6, 1% sodium lactate, fusidic acid, D- fructose, troleandomycin, rifamycin SV, L- glutamic acid, lincomycin, glucuronamide, tetrazolium blue, acetoacetic acid and acetic acid; but negative for dextrin, D- maltose, D- trehalose, D- cellobiolose, gentiobiose, sucrose, D- turanose, stachyose, pH 5, D- raffinose,
|
||||
<emphasis id="E4C4EABC7717551F2A2EA33A2632F9CF" box="[305,321,1569,1592]" italics="true" pageId="16" pageNumber="101">α</emphasis>
|
||||
-D- lactose, D- melibiose,
|
||||
<emphasis id="E4C4EABC7717551F2959A33A2526F9CE" box="[582,597,1569,1593]" italics="true" pageId="16" pageNumber="101">β</emphasis>
|
||||
-methyl-D- glucoside,
|
||||
<subScript id="4A3434EB7717551F2BF8A35C2788F9AE" attach="right" box="[231,251,1601,1625]" fontSize="7" pageId="16" pageNumber="101">D-</subScript>
|
||||
salicin,
|
||||
<emphasis id="E4C4EABC7717551F2A4FA35A2611F9AF" box="[336,354,1601,1624]" italics="true" pageId="16" pageNumber="101">N</emphasis>
|
||||
-
|
||||
<subScript id="4A3434EB7717551F2A76A35A26B5F9AE" attach="left" box="[361,454,1601,1625]" fontSize="7" pageId="16" pageNumber="101">acetyl-D-</subScript>
|
||||
glucosamine,
|
||||
<emphasis id="E4C4EABC7717551F2943A35A251DF9AF" box="[604,622,1601,1624]" italics="true" pageId="16" pageNumber="101">N</emphasis>
|
||||
-acetyl-
|
||||
<emphasis id="E4C4EABC7717551F29A2A35A25BFF9AE" box="[701,716,1601,1625]" italics="true" pageId="16" pageNumber="101">β</emphasis>
|
||||
-mannosamin,
|
||||
<emphasis id="E4C4EABC7717551F2A02A379265CF98E" box="[285,303,1634,1657]" italics="true" pageId="16" pageNumber="101">N</emphasis>
|
||||
-acetyl-D- galactosamin,
|
||||
<emphasis id="E4C4EABC7717551F295CA3792526F98E" box="[579,597,1634,1657]" italics="true" pageId="16" pageNumber="101">N</emphasis>
|
||||
-acetyl
|
||||
<emphasis id="E4C4EABC7717551F29B3A37925CDF98E" box="[684,702,1634,1657]" italics="true" pageId="16" pageNumber="101">N</emphasis>
|
||||
-acetyl neuraminic acid, 1% NaCl, 4% NaCl, 8% NaCl,
|
||||
<emphasis id="E4C4EABC7717551F29ADA39925B1F96E" box="[690,706,1666,1689]" italics="true" pageId="16" pageNumber="101">α</emphasis>
|
||||
-D- glucose, D- mannose, D- fructose-6-PO
|
||||
<subScript id="4A3434EB7717551F2906A3B22551F94D" attach="left" box="[537,546,1705,1722]" fontSize="7" pageId="16" pageNumber="101">4</subScript>
|
||||
, D- galactose, 3-methyl-glucose, D- fucose, L- fucose, L- rhamnose, inosine, D- serine, D- sorbitol, D- mannitol, D- arabitol, myo-inositol, glycerol, D- glucose-6-PO
|
||||
<subScript id="4A3434EB7717551F2AA3A21126B6F8EC" attach="left" box="[444,453,1802,1819]" fontSize="7" pageId="16" pageNumber="101">4</subScript>
|
||||
, D- aspartic acid, D- serine, minocycline, gelatin, glyctl-L- proline, L- alanine, L- arginine, L- aspartic acid, L- histidine, L- pyroglutamic acid, L- serine, guanidine HCl, niaproof 4, pectin, D- galacturonic acid, L- galactonic acid lactone, D- gluconic acid, D- glucuronic acid, mucic acid, quinic acid, D- saccharic acid, vancomycin,
|
||||
<emphasis id="E4C4EABC7717551F286BA41D24F2FEEA" box="[884,897,262,285]" italics="true" pageId="16" pageNumber="101">p</emphasis>
|
||||
-hydroxy-pheylacetic acid, methyl pyruvate, D- lactic acid methyl ester, L- lactic acid, citric acid,
|
||||
<emphasis id="E4C4EABC7717551F2E19A43D2265FECA" box="[1286,1302,294,317]" italics="true" pageId="16" pageNumber="101">α</emphasis>
|
||||
-keto-glutaric acid, D- malic acid, L- malic acid, bromo-succinic acid, nalidixic acid, lithium chloride, potassium tellurite, tween 40,
|
||||
<emphasis id="E4C4EABC7717551F286FA49C240CFE69" box="[880,895,391,414]" italics="true" pageId="16" pageNumber="101">γ</emphasis>
|
||||
-amino-butryric acid,
|
||||
<emphasis id="E4C4EABC7717551F2F7AA49C2306FE69" box="[1125,1141,391,414]" italics="true" pageId="16" pageNumber="101">α</emphasis>
|
||||
-hydroxy-butyric acid,
|
||||
<emphasis id="E4C4EABC7717551F2E75A49D220AFE69" box="[1386,1401,390,414]" italics="true" pageId="16" pageNumber="101">β</emphasis>
|
||||
-hydroxy-D, L- butyric acid,
|
||||
<emphasis id="E4C4EABC7717551F2F49A4BC2315FE49" box="[1110,1126,423,446]" italics="true" pageId="16" pageNumber="101">α</emphasis>
|
||||
-keto butyric acid, propionic acid, formic acid, aztreonam, sodium butyrate and sodium bromate. In API 20NE test, weak positive for urease; but negative for reduction of nitrates (NO
|
||||
<subScript id="4A3434EB7717551F2FC6A7142391FDD7" attach="left" box="[1241,1250,527,544]" fontSize="7" pageId="16" pageNumber="101">3</subScript>
|
||||
) to nitrite (NO
|
||||
<subScript id="4A3434EB7717551F2E9DA71422F8FDD7" attach="left" box="[1410,1419,527,544]" fontSize="7" pageId="16" pageNumber="101">2</subScript>
|
||||
<superScript id="21C59BE67717551F2E94A71E22E6FDE5" attach="right" box="[1419,1429,517,530]" fontSize="7" pageId="16" pageNumber="101">-</superScript>
|
||||
), reduction of nitrates (NO
|
||||
<subScript id="4A3434EB7717551F2F47A7342312FDB7" attach="left" box="[1112,1121,559,576]" fontSize="7" pageId="16" pageNumber="101">3</subScript>
|
||||
) to nitrogen (N
|
||||
<subScript id="4A3434EB7717551F2E14A7342267FDB7" attach="left" box="[1291,1300,559,576]" fontSize="7" pageId="16" pageNumber="101">2</subScript>
|
||||
), indole production on tryptophan, glucose fermentation, arginine dihydrolase, esculin hydrolysis, gelatin hydrolysis,
|
||||
<emphasis id="E4C4EABC7717551F2E74A7732209FD77" box="[1387,1402,616,640]" italics="true" pageId="16" pageNumber="101">β</emphasis>
|
||||
-galactosidase. D- Glucose, L- arabinose (weak), D- mannose (weak) and phenylacetic acid (weak) were utilized whereas,
|
||||
<subScript id="4A3434EB7717551F2872A7D424F1FD16" attach="right" box="[877,898,713,737]" fontSize="7" pageId="16" pageNumber="101">D-</subScript>
|
||||
mannitol,
|
||||
<emphasis id="E4C4EABC7717551F28ECA7D22376FD17" box="[1011,1029,713,736]" italics="true" pageId="16" pageNumber="101">N</emphasis>
|
||||
-
|
||||
<subScript id="4A3434EB7717551F2F13A7D2231FFD16" attach="right" box="[1036,1132,713,737]" fontSize="7" pageId="16" pageNumber="101">acetyl-D-</subScript>
|
||||
glucosamine,
|
||||
<subScript id="4A3434EB7717551F2E19A7D42268FD16" attach="right" box="[1286,1307,713,737]" fontSize="7" pageId="16" pageNumber="101">D-</subScript>
|
||||
maltose, potassium gluconate, capric acid, adipic acid, malic acid and trisodium citrate were not utilized. In API 32GN test, glycogen, L- arabinose and 3-hydroxybutyric acid were utilized whereas,
|
||||
<subScript id="4A3434EB7717551F28E1A64B2363FC95" attach="right" box="[1022,1040,842,866]" fontSize="7" pageId="16" pageNumber="101">L-</subScript>
|
||||
rhamnose,
|
||||
<emphasis id="E4C4EABC7717551F2F9BA65123E5FC96" box="[1156,1174,842,865]" italics="true" pageId="16" pageNumber="101">N</emphasis>
|
||||
-acetyl-glucosamine,
|
||||
<subScript id="4A3434EB7717551F2E6AA64B22F9FC95" attach="right" box="[1397,1418,842,866]" fontSize="7" pageId="16" pageNumber="101">D-</subScript>
|
||||
ribose, inositol, D- saccharose (sucrose), D- maltose, itaconic acid, suberic acid, sodium malonate, sodium acetate, lactic acid, L- alanine, potassium 5-ketogluconate, 3-hydroxybenzoic acid, L- serine, D- mannitol, D- glucose, salicin, D- melibiose, D- fucose, D- sorbitol, propionic acid, capric acid, valeric acid, trisodium citrate, L- histidine, potassium 2-ketogluconate, 3-hydroxybutyric acid, 4-hydroxybenzoic acid and
|
||||
<subScript id="4A3434EB7717551F28A1A14924A3FB93" attach="right" box="[958,976,1100,1124]" fontSize="7" pageId="16" pageNumber="101">L-</subScript>
|
||||
proline were not utilized.
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
<subSubSection id="9EAA65257717551F2841A17724BAFB33" pageId="16" pageNumber="101" type="description">
|
||||
<paragraph id="D60F36AE7717551F2841A17724BAFB33" blockId="16.[839,1444,261,1221]" pageId="16" pageNumber="101">
|
||||
Strain BT250 (
|
||||
<emphasis id="E4C4EABC7717551F2F1BA177236BFB73" bold="true" box="[1028,1048,1132,1156]" pageId="16" pageNumber="101">=</emphasis>
|
||||
NIBRBAC000503027) was isolated from a soil sample, Uijeongbu City in
|
||||
<collectingRegion id="1474F84C7717551F2FEAA1972405FB32" country="South Korea" name="Gyeonggi" pageId="16" pageNumber="101">Gyeonggi Province</collectingRegion>
|
||||
,
|
||||
<collectingCountry id="AEA7763E7717551F289EA1B624B5FB33" box="[897,966,1197,1220]" name="South Korea" pageId="16" pageNumber="101">Korea</collectingCountry>
|
||||
.
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
</treatment>
|
||||
</document>
|
||||
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Reference in a new issue