180 lines
18 KiB
XML
180 lines
18 KiB
XML
<document id="A7753E6D56C087216F259D57ADB5B9F6" ID-DOI="10.12651/JSR.2020.9.2.085" ID-ISSN="2713-8615" ID-Zenodo-Dep="13140525" IM.bibliography_approvedBy="felipe" IM.illustrations_approvedBy="felipe" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.taxonomicNames_approvedBy="felipe" IM.treatments_approvedBy="felipe" checkinTime="1722403497596" checkinUser="felipe" docAuthor="Han, Joo Hyun, Maeng, Soohyun, Park, Yuna, Lee, Sang Eun, Lee, Byoung-Hee & Kim, Ki-eun Lee and Myung Kyum" docDate="2020" docId="5E1987B8770F55052858A2472786F853" docLanguage="en" docName="JSpeciesRes.9.2.85-104.pdf" docOrigin="Journal of Species Research 9 (2)" docStyle="DocumentStyle:4D398BFF45FF8CA9E08F546BB06AE372.2:JSpeciesRes.2012-.journal_article" docStyleId="4D398BFF45FF8CA9E08F546BB06AE372" docStyleName="JSpeciesRes.2012-.journal_article" docStyleVersion="2" docTitle="Massilia neuiana BT" docType="treatment" docVersion="2" lastPageNumber="95" masterDocId="A220FFC07707550F2B1FA51B2773FFF7" masterDocTitle="Identification of 12 radiation-resistant bacterial species in the phylum Proteobacteria new to Korea" masterLastPageNumber="104" masterPageNumber="85" pageNumber="93" updateTime="1722403955945" updateUser="ExternalLinkService" zenodo-license-document="CC-BY-4.0">
|
||
<mods:mods id="532244EF2C68AA10D3554A733394969A" xmlns:mods="http://www.loc.gov/mods/v3">
|
||
<mods:titleInfo id="E64D6DCB5ACE35645ADC548DDF61F7F7">
|
||
<mods:title id="D3382BDA4131C195E5D194E3AC76C9BA">Identification of 12 radiation-resistant bacterial species in the phylum Proteobacteria new to Korea</mods:title>
|
||
</mods:titleInfo>
|
||
<mods:name id="E2483912A7C1D01090BE91D20768595C" type="personal">
|
||
<mods:role id="8EAC40250C1A659B036820FDE0937FFB">
|
||
<mods:roleTerm id="9F642F8B140E9687D05C463ACAD22AA5">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="EA62246FE5F2F22D9E197A44758F4C0C">Han, Joo Hyun</mods:namePart>
|
||
<mods:affiliation id="57F67F1B27BA30623F211B83B7BDCC29">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
|
||
</mods:name>
|
||
<mods:name id="2CB87DDD709760F892520A6BCF6E7B3C" type="personal">
|
||
<mods:role id="589FAE790AF0226701435A4B70166723">
|
||
<mods:roleTerm id="09FEA1ACFEDB1230B68D8E86B7B43312">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="0B8B8F567F79BEA2323D138629693B0D">Maeng, Soohyun</mods:namePart>
|
||
<mods:affiliation id="84B70539FFD0DF0DB6DD81FA5A355DB5">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
|
||
</mods:name>
|
||
<mods:name id="8BF04D7F66137C8825C2C21B12E74053" type="personal">
|
||
<mods:role id="9A9BF56F0E6F02DB45925412487FC226">
|
||
<mods:roleTerm id="5AD4BFEA90B7E6301A3FD9BB727E1D5E">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="775A5ABA86AFA79CE9D47D5474EEE557">Park, Yuna</mods:namePart>
|
||
<mods:affiliation id="0E1460BBE2B387A2C5DCF7EC8A21AAEC">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
|
||
</mods:name>
|
||
<mods:name id="262C8E63C0F82341F547C98356649108" type="personal">
|
||
<mods:role id="12B19141FFB98D366701AC48963184BD">
|
||
<mods:roleTerm id="FB1E866654FC327769B56B58A59D1D89">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="DB600EE00AC6FE11415F0CEE7604639B">Lee, Sang Eun</mods:namePart>
|
||
<mods:affiliation id="2D1FDCB404F1BE04D7B5AEEE6534DB3C">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
|
||
</mods:name>
|
||
<mods:name id="1462BDF435F1BFA7B07E8C2BCF9B3DA9" type="personal">
|
||
<mods:role id="59E176F3323AF7BE7F615FE4253F3900">
|
||
<mods:roleTerm id="B5982FA62422CF5B38D0C44FBF736A18">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="EC69D3AEFC63DC123C04382DB39B845F">Lee, Byoung-Hee</mods:namePart>
|
||
<mods:affiliation id="0BE187B45DA25F3540432EC0657B451B">Environmental Research Complex, National Institute of Biological Resources, Incheon 22689, Republic of Korea</mods:affiliation>
|
||
</mods:name>
|
||
<mods:name id="9F7541F36B90651B03D3EC9FA9D1609B" type="personal">
|
||
<mods:role id="12BEA730589CC2A0575FFB3DE0371143">
|
||
<mods:roleTerm id="949A88704747FC5B04ABAC2889A65186">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="B72FC131D67D584D3BE07C4E86F91320">Kim, Ki-eun Lee and Myung Kyum</mods:namePart>
|
||
</mods:name>
|
||
<mods:typeOfResource id="B92EC0FA7AA4F7F7A6CC26C4594FF739">text</mods:typeOfResource>
|
||
<mods:relatedItem id="DCE5BE78972FDE19FDDADDF57446243E" type="host">
|
||
<mods:titleInfo id="71F16D9026EA3091FEA3711FF044D794">
|
||
<mods:title id="3EA6150AA34ADC13F05D1B8BB1633A74">Journal of Species Research</mods:title>
|
||
</mods:titleInfo>
|
||
<mods:part id="C67A0BCBC581FCB6768A59ED65BAD298">
|
||
<mods:date id="8304F8BAAE1813904E9F69CE93FDA085">2020</mods:date>
|
||
<mods:detail id="856CABC7FA4E1EDAB99A05F651C59E95" type="volume">
|
||
<mods:number id="1E4D09B150871F57BEAA8A2D1EF8DD19">9</mods:number>
|
||
</mods:detail>
|
||
<mods:detail id="1A6C4F81F77972F22876E7D9D215E92B" type="issue">
|
||
<mods:number id="DAC7E5DC1DFBB1DC1A8DBC3F77678508">2</mods:number>
|
||
</mods:detail>
|
||
<mods:extent id="0EDB179E938D68926121687C8360FA1B" unit="page">
|
||
<mods:start id="2029425AD4061E9329114271BEA175F7">85</mods:start>
|
||
<mods:end id="6E5482B9730596B4A2D7D538E06AF4F6">104</mods:end>
|
||
</mods:extent>
|
||
</mods:part>
|
||
</mods:relatedItem>
|
||
<mods:classification id="535F71D826041B592EF5AEEAE27E3649">journal article</mods:classification>
|
||
<mods:identifier id="87F04413E638F60016E468B6B7B31694" type="DOI">10.12651/JSR.2020.9.2.085</mods:identifier>
|
||
<mods:identifier id="E78E7CE2E597E6E681A96DA234B8776D" type="ISSN">2713-8615</mods:identifier>
|
||
<mods:identifier id="C54C76BF5CA98EB04788837AA8CC8B68" type="Zenodo-Dep">13140525</mods:identifier>
|
||
</mods:mods>
|
||
<treatment id="5E1987B8770F55052858A2472786F853" ID-DOI="http://doi.org/10.5281/zenodo.13140523" ID-Zenodo-Dep="13140523" LSID="urn:lsid:plazi:treatment:5E1987B8770F55052858A2472786F853" httpUri="http://treatment.plazi.org/id/5E1987B8770F55052858A2472786F853" lastPageId="10" lastPageNumber="95" pageId="8" pageNumber="93">
|
||
<subSubSection id="9EAA6525770F55052858A2472658F8B3" lastPageId="10" lastPageNumber="95" pageId="8" pageNumber="93" type="nomenclature">
|
||
<paragraph id="D60F36AE770F55072858A247238CF883" blockId="8.[839,1279,1884,1908]" box="[839,1279,1884,1908]" pageId="8" pageNumber="93">
|
||
<heading id="8D4781C2770F55072858A247238CF883" box="[839,1279,1884,1908]" fontSize="10" level="2" pageId="8" pageNumber="93" reason="5">
|
||
<emphasis id="E4C4EABC770F55072858A247238CF883" bold="true" box="[839,1279,1884,1908]" pageId="8" pageNumber="93">
|
||
Description of
|
||
<taxonomicName id="11B04D2D770F550728F1A24723A4F883" authority="BT" authorityName="BT" box="[1006,1239,1884,1908]" class="Betaproteobacteria" family="Oxalobacteraceae" genus="Massilia" kingdom="Bacteria" order="Burkholderiales" pageId="8" pageNumber="93" phylum="Proteobacteria" rank="species" species="neuiana">
|
||
<emphasis id="E4C4EABC770F550728F1A24723DFF883" bold="true" box="[1006,1196,1884,1908]" italics="true" pageId="8" pageNumber="93">Massilia neuiana</emphasis>
|
||
BT
|
||
</taxonomicName>
|
||
239
|
||
</emphasis>
|
||
</heading>
|
||
</paragraph>
|
||
<paragraph id="D60F36AE770F55052841A2862658F8B3" blockId="8.[862,1444,1949,1973]" lastBlockId="10.[174,779,1610,1956]" lastPageId="10" lastPageNumber="95" pageId="8" pageNumber="93">
|
||
Cells are Gram-stain-positive, non-flagellated, and rod-shaped. Colonies are pale yellow-colored after 3 days of incubation on R2A at 25°C. In the BIOLOG GEN III, positive for dextrin, D- maltose, gentiobiose, pH 6, L- rhamnose, gelatin, glyctl-L- proline, L- aspartic, L- glutamic acid, lincomycin, D- galacturonic acid, L- galactonic acid lactone, D- glucuronic acid, tetrazolium blue, D- malic acid, L- malic acid, propionic acid, acetic acid and aztreonam; weak positive for D- glucose, D- fructose, D- galactose, D- fucose, 1% sodium lactate, D- fructose-6-PO
|
||
<subScript id="4A3434EB770E550629C2A3622595F97D" attach="left" box="[733,742,1657,1674]" fontSize="7" pageId="9" pageNumber="94">4</subScript>
|
||
, L- histidine, pectin, glucuronamide, tetrazolium violet, tween 40,
|
||
<emphasis id="E4C4EABC770E55062A1CA3A92661F93D" box="[259,274,1714,1738]" italics="true" pageId="9" pageNumber="94">β</emphasis>
|
||
-hydroxy-D, L- butyric acid, acetoacetic acid and formic acid; but negative for D- trehalose, D- cellobiolose, sucrose, D- turanose, stachyose, pH 5, D- raffinose,
|
||
<emphasis id="E4C4EABC770E55062B8FA20F27D3F8DC" box="[144,160,1812,1835]" italics="true" pageId="9" pageNumber="94">α</emphasis>
|
||
-
|
||
<subScript id="4A3434EB770E55062BB7A20227CFF8DC" attach="none" box="[168,188,1811,1835]" fontSize="7" pageId="9" pageNumber="94">D-</subScript>
|
||
lactose,
|
||
<subScript id="4A3434EB770E55062A0BA202265BF8DC" attach="right" box="[276,296,1811,1835]" fontSize="7" pageId="9" pageNumber="94">D-</subScript>
|
||
melibiose,
|
||
<emphasis id="E4C4EABC770E55062A82A20826DFF8DC" box="[413,428,1811,1835]" italics="true" pageId="9" pageNumber="94">β</emphasis>
|
||
-
|
||
<subScript id="4A3434EB770E55062AADA208256AF8DC" attach="left" box="[434,537,1811,1835]" fontSize="7" pageId="9" pageNumber="94">methyl-D-</subScript>
|
||
glucoside,
|
||
<subScript id="4A3434EB770E55062993A20225D3F8DC" attach="right" box="[652,672,1811,1835]" fontSize="7" pageId="9" pageNumber="94">D-</subScript>
|
||
salicin,
|
||
<emphasis id="E4C4EABC770E55062B8FA22F27D1F8BC" box="[144,162,1844,1867]" italics="true" pageId="9" pageNumber="94">N</emphasis>
|
||
-acetyl-D- glucosamine,
|
||
<emphasis id="E4C4EABC770E55062A85A22F26DFF8BC" box="[410,428,1844,1867]" italics="true" pageId="9" pageNumber="94">N</emphasis>
|
||
-acetyl-
|
||
<emphasis id="E4C4EABC770E55062AE4A2282579F8BC" box="[507,522,1843,1867]" italics="true" pageId="9" pageNumber="94">β</emphasis>
|
||
-mannosamin,
|
||
<emphasis id="E4C4EABC770E550629B8A22F25CAF8BC" box="[679,697,1844,1867]" italics="true" pageId="9" pageNumber="94">N</emphasis>
|
||
-acetyl-D- galactosamin,
|
||
<emphasis id="E4C4EABC770E55062A7AA24F2604F89C" box="[357,375,1876,1899]" italics="true" pageId="9" pageNumber="94">N</emphasis>
|
||
-acetyl neuraminic acid, 1% NaCl, 4% NaCl, 8% NaCl,
|
||
<subScript id="4A3434EB770E55062A6BA26126F4F87C" attach="right" box="[372,391,1908,1931]" fontSize="7" pageId="9" pageNumber="94">D-</subScript>
|
||
mannose, 3-methyl-glucose,
|
||
<subScript id="4A3434EB770E550629A4A26125BFF87B" attach="right" box="[699,716,1908,1932]" fontSize="7" pageId="9" pageNumber="94">L-</subScript>
|
||
fucose, inosine, fusidic acid, D- serine, D- sorbitol, D- mannitol, D- arabitol, myo-inositol, glycerol, D- glucose-6-PO
|
||
<subScript id="4A3434EB770E550629C2A2A72595F83A" attach="left" box="[733,742,1980,1997]" fontSize="7" pageId="9" pageNumber="94">4</subScript>
|
||
, D- aspartic acid, D- serine, troleandomycin, rifamycin SV, minocycline, L- alanine, L- arginine, L- pyroglutamic acid, L- serine, guanidine HCl, niaproof 4, D- gluconic acid, mucic acid, quinic acid, D- saccharic acid, bancomycin,
|
||
<emphasis id="E4C4EABC770E55062E52A0CA2229FA1F" box="[1357,1370,1489,1512]" italics="true" pageId="9" pageNumber="94">p</emphasis>
|
||
-hydroxy-pheylacetic acid, methyl pyruvate, D- lactic acid methyl ester,
|
||
<subScript id="4A3434EB770E550628ABA30C24B5F9DE" attach="right" box="[948,966,1553,1577]" fontSize="7" pageId="9" pageNumber="94">L-</subScript>
|
||
lactic acid, citric acid,
|
||
<emphasis id="E4C4EABC770E55062FAEA30A23B2F9DF" box="[1201,1217,1553,1576]" italics="true" pageId="9" pageNumber="94">α</emphasis>
|
||
-keto-glutaric acid, bromo-succinic acid, nalidixic acid, lithium chloride, potassium tellurite,
|
||
<emphasis id="E4C4EABC770E550628C3A3492498F99E" box="[988,1003,1618,1641]" italics="true" pageId="9" pageNumber="94">γ</emphasis>
|
||
-amino-butryric acid,
|
||
<emphasis id="E4C4EABC770E55062FD1A34923ADF99E" box="[1230,1246,1618,1641]" italics="true" pageId="9" pageNumber="94">α</emphasis>
|
||
-hydroxy-butyric acid,
|
||
<emphasis id="E4C4EABC770E55062861A36924FDF97E" box="[894,910,1650,1673]" italics="true" pageId="9" pageNumber="94">α</emphasis>
|
||
-keto butyric acid, sodium butyrate and sodium bromate. In API 20NE test, positive for arginine dihydrolase, urease and esculin hydrolysis; but negative for reduction of nitrates (NO
|
||
<subScript id="4A3434EB770E55062F2DA3C12349F91C" attach="left" box="[1074,1082,1754,1771]" fontSize="7" pageId="9" pageNumber="94">3</subScript>
|
||
) to nitrite (NO
|
||
<subScript id="4A3434EB770E55062FC4A3C12397F91C" attach="left" box="[1243,1252,1754,1771]" fontSize="7" pageId="9" pageNumber="94">2</subScript>
|
||
<superScript id="21C59BE6770E55062FFCA3CB239EF92A" attach="right" box="[1251,1261,1744,1757]" fontSize="7" pageId="9" pageNumber="94">-</superScript>
|
||
), reduction of nitrates (NO
|
||
<subScript id="4A3434EB770E550628B7A3E124C3F8FC" attach="left" box="[936,944,1786,1803]" fontSize="7" pageId="9" pageNumber="94">3</subScript>
|
||
) to nitrogen (N
|
||
<subScript id="4A3434EB770E55062F4CA3E12328F8FC" attach="left" box="[1107,1115,1786,1803]" fontSize="7" pageId="9" pageNumber="94">2</subScript>
|
||
), indole production on tryptophan, glucose fermentation, gelatin hydrolysis,
|
||
<emphasis id="E4C4EABC770E55062E30A208224DF8DC" box="[1327,1342,1811,1835]" italics="true" pageId="9" pageNumber="94">β</emphasis>
|
||
-galactosidase and D- maltose (weak) were utilized. D- Glucose, D- mannose, D- mannitol,
|
||
<emphasis id="E4C4EABC770E55062F2CA24F2336F89C" box="[1075,1093,1876,1899]" italics="true" pageId="9" pageNumber="94">N</emphasis>
|
||
-acetyl-D- glucosamine, potassium gluconate, capric acid, adipic acid, malic acid, trisodium citrate and phenylacetic acid were not utilized. In API 32GN test,
|
||
<emphasis id="E4C4EABC770E550628C7A2AE2499F83B" box="[984,1002,1973,1996]" italics="true" pageId="9" pageNumber="94">N</emphasis>
|
||
-acetyl-glucosamine, D- ribose, inositol, D- saccharose (sucrose), itaconic acid, suberic acid, sodium malonate, lactic acid, potassium 5-ketogluconate, 3-hydroxybenzoic acid, D- mannitol, D- glucose, salicin, D- melibiose, D- fucose, D- sorbitol, capric acid, valeric acid, trisodium citrate, L- histidine, potassium 2-ketogluconate and 4-hydroxybenzoic acid were utilized whereas, L- rhamnose, D- maltose, glycogen, L- serine and L- arabinose were not utilized.
|
||
</paragraph>
|
||
</subSubSection>
|
||
<caption id="82CF6626770E55062B8EA1C5240CFADE" ID-DOI="http://doi.org/10.5281/zenodo.13140547" ID-Zenodo-Dep="13140547" httpUri="https://zenodo.org/record/13140547/files/figure.png" pageId="9" pageNumber="94" startId="9.[145,178,1246,1268]" targetBox="[384,1168,261,1211]" targetPageId="9" targetType="figure">
|
||
<paragraph id="D60F36AE770E55062B8EA1C5240CFADE" blockId="9.[144,1414,1246,1321]" pageId="9" pageNumber="94">
|
||
<emphasis id="E4C4EABC770E55062B8EA1C527BCFB04" bold="true" box="[145,207,1246,1268]" pageId="9" pageNumber="94">Fig. 8.</emphasis>
|
||
Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the species
|
||
<taxonomicName id="11B04D2D770E55062AEEA1E3259FFAFA" box="[497,748,1272,1293]" class="Betaproteobacteria" family="Burkholderiaceae" genus="Pseudomonas" kingdom="Bacteria" order="Burkholderiales" pageId="9" pageNumber="94" phylum="Proteobacteria" rank="species" species="reidholzensis">
|
||
<emphasis id="E4C4EABC770E55062AEEA1E3259FFAFA" box="[497,748,1272,1293]" italics="true" pageId="9" pageNumber="94">Pseudomonas reidholzensis</emphasis>
|
||
</taxonomicName>
|
||
. Bootstrap values (>70%) are shown above nodes for the neighbor-joining methods. Bar: 0.01 and 0.02 substitutions per nucleotide position, respectively.
|
||
</paragraph>
|
||
</caption>
|
||
<caption id="82CF6626770D55052BB1A0A32409F9F3" ID-DOI="http://doi.org/10.5281/zenodo.13140551" ID-Zenodo-Dep="13140551" httpUri="https://zenodo.org/record/13140551/files/figure.png" pageId="10" pageNumber="95" startId="10.[174,207,1464,1486]" targetBox="[388,1200,261,1433]" targetPageId="10" targetType="figure">
|
||
<paragraph id="D60F36AE770D55052BB1A0A32409F9F3" blockId="10.[174,1444,1464,1540]" pageId="10" pageNumber="95">
|
||
<emphasis id="E4C4EABC770D55052BB1A0A32798FA3A" bold="true" box="[174,235,1464,1486]" pageId="10" pageNumber="95">Fig. 9.</emphasis>
|
||
Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the species
|
||
<taxonomicName id="11B04D2D770D55052908A0CF2599FA1F" box="[535,746,1491,1513]" class="Alphaproteobacteria" family="Methylobacteriaceae" genus="Microvirga" kingdom="Bacteria" order="Rhizobiales" pageId="10" pageNumber="95" phylum="Proteobacteria" rank="species" species="lotononidis">
|
||
<emphasis id="E4C4EABC770D55052908A0CF2599FA1F" box="[535,746,1491,1513]" italics="true" pageId="10" pageNumber="95">Microvirga lotononidis</emphasis>
|
||
</taxonomicName>
|
||
. Bootstrap values (>70%) are shown above nodes for the neighbor-joining methods. Bar: 0.01 and 0.02 substitutions per nucleotide position, respectively.
|
||
</paragraph>
|
||
</caption>
|
||
<subSubSection id="9EAA6525770D55052BDAA2572786F853" pageId="10" pageNumber="95" type="description">
|
||
<paragraph id="D60F36AE770D55052BDAA2572786F853" blockId="10.[174,779,1610,1956]" pageId="10" pageNumber="95">
|
||
Strain BT239 (
|
||
<emphasis id="E4C4EABC770D55052A74A257260CF893" bold="true" box="[363,383,1868,1892]" pageId="10" pageNumber="95">=</emphasis>
|
||
NIBRBAC000503018) was isolated from a soil sample, Pocheon City in
|
||
<collectingRegion id="1474F84C770D55052927A2772474F873" box="[568,775,1900,1924]" country="South Korea" name="Gyeonggi" pageId="10" pageNumber="95">Gyeonggi Province</collectingRegion>
|
||
,
|
||
<collectingCountry id="AEA7763E770D55052BB1A2962782F853" box="[174,241,1933,1956]" name="South Korea" pageId="10" pageNumber="95">Korea</collectingCountry>
|
||
.
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |