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<document id="746ED52B4F19E44D9FE075125867D29E" ID-DOI="10.12651/JSR.2020.9.2.085" ID-ISSN="2713-8615" ID-Zenodo-Dep="13140525" IM.bibliography_approvedBy="felipe" IM.illustrations_approvedBy="felipe" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.taxonomicNames_approvedBy="felipe" IM.treatments_approvedBy="felipe" checkinTime="1722403497596" checkinUser="felipe" docAuthor="Han, Joo Hyun, Maeng, Soohyun, Park, Yuna, Lee, Sang Eun, Lee, Byoung-Hee &amp; Kim, Ki-eun Lee and Myung Kyum" docDate="2020" docId="5E1987B8770355092858A253248FF847" docLanguage="en" docName="JSpeciesRes.9.2.85-104.pdf" docOrigin="Journal of Species Research 9 (2)" docStyle="DocumentStyle:4D398BFF45FF8CA9E08F546BB06AE372.2:JSpeciesRes.2012-.journal_article" docStyleId="4D398BFF45FF8CA9E08F546BB06AE372" docStyleName="JSpeciesRes.2012-.journal_article" docStyleVersion="2" docTitle="Paraburkholderia kirstenboschensis BT" docType="treatment" docVersion="2" lastPageNumber="91" masterDocId="A220FFC07707550F2B1FA51B2773FFF7" masterDocTitle="Identification of 12 radiation-resistant bacterial species in the phylum Proteobacteria new to Korea" masterLastPageNumber="104" masterPageNumber="85" pageNumber="89" updateTime="1722403955945" updateUser="ExternalLinkService" zenodo-license-document="CC-BY-4.0">
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<mods:title id="ACD151D2BA77C2492957F9ADE826E5D8">Identification of 12 radiation-resistant bacterial species in the phylum Proteobacteria new to Korea</mods:title>
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<mods:namePart id="88798187BDCA632130D0761D99BA88F5">Han, Joo Hyun</mods:namePart>
<mods:affiliation id="6422D3EFBA0A4CC0FE455336E167B550">Department of Bio &amp; Environmental Technology, College of Natural Science, Seoul Womens University, Seoul 01797, Republic of Korea</mods:affiliation>
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<mods:namePart id="F64A459CA0FEA01B282F7E75EB9613B6">Maeng, Soohyun</mods:namePart>
<mods:affiliation id="6B46F7310EE6EB2EDB0E3CEB0DA9D1C8">Department of Bio &amp; Environmental Technology, College of Natural Science, Seoul Womens University, Seoul 01797, Republic of Korea</mods:affiliation>
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<mods:namePart id="F3DB275A5138C0AE2158B61D5CD50DE6">Park, Yuna</mods:namePart>
<mods:affiliation id="02A83A52E72AAB88A32C9972DF2BFA53">Department of Bio &amp; Environmental Technology, College of Natural Science, Seoul Womens University, Seoul 01797, Republic of Korea</mods:affiliation>
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<mods:namePart id="340E86D45E7A53F4716B0B672843BA98">Lee, Sang Eun</mods:namePart>
<mods:affiliation id="D0D1BD4874D98967FA4CF7F4887F92A0">Department of Bio &amp; Environmental Technology, College of Natural Science, Seoul Womens University, Seoul 01797, Republic of Korea</mods:affiliation>
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<mods:namePart id="95A96A01E9483706E5D9E083B76B375E">Lee, Byoung-Hee</mods:namePart>
<mods:affiliation id="EACB95D75972C86137C3292CD8CC1C46">Environmental Research Complex, National Institute of Biological Resources, Incheon 22689, Republic of Korea</mods:affiliation>
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<mods:namePart id="7A38F790776DF886617086520B38B3E3">Kim, Ki-eun Lee and Myung Kyum</mods:namePart>
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<mods:title id="51EBCC110E229219C0BA655FB78967C2">Journal of Species Research</mods:title>
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<mods:date id="3A2309BFC710E265A35668B05FDE36ED">2020</mods:date>
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<treatment id="5E1987B8770355092858A253248FF847" LSID="urn:lsid:plazi:treatment:5E1987B8770355092858A253248FF847" httpUri="http://treatment.plazi.org/id/5E1987B8770355092858A253248FF847" lastPageId="6" lastPageNumber="91" pageId="4" pageNumber="89">
<subSubSection id="9EAA6525770355092858A2532341F8B8" lastPageId="6" lastPageNumber="91" pageId="4" pageNumber="89" type="nomenclature">
<paragraph id="D60F36AE7703550B2858A25324E1F877" blockId="4.[839,1404,1864,1920]" pageId="4" pageNumber="89">
<heading id="8D4781C27703550B2858A25324E1F877" fontSize="10" level="2" pageId="4" pageNumber="89" reason="5">
<emphasis id="E4C4EABC7703550B2858A25324E1F877" bold="true" pageId="4" pageNumber="89">
Description of
<taxonomicName id="11B04D2D7703550B28F1A2532419F877" authority="BT" authorityName="BT" class="Gammaproteobacteria" family="Burkholderiaceae" genus="Paraburkholderia" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Burkholderiales" pageId="4" pageNumber="89" phylum="Proteobacteria" rank="species" species="kirstenboschensis">
<emphasis id="E4C4EABC7703550B28F1A253220FF897" bold="true" box="[1006,1404,1864,1888]" italics="true" pageId="4" pageNumber="89">Paraburkholderia kirstenboschensis</emphasis>
BT
</taxonomicName>
368
</emphasis>
</heading>
</paragraph>
<paragraph id="D60F36AE770355092841A2822341F8B8" blockId="4.[862,1443,1945,1969]" lastBlockId="6.[839,1444,1557,1968]" lastPageId="6" lastPageNumber="91" pageId="4" pageNumber="89">
Cells are Gram-stain-negative, non-flagellated, and rod-shaped. Colonies are white-colored after 3 days of incubation on R2A at 25°C. In the BIOLOG GEN III, positive for
<subScript id="4A3434EB7702550A2A09A364265AF966" attach="right" box="[278,297,1657,1681]" fontSize="7" pageId="5" pageNumber="90">D-</subScript>
trehalose, pH 6, pH 5,
<emphasis id="E4C4EABC7702550A293AA3622544F967" box="[549,567,1657,1680]" italics="true" pageId="5" pageNumber="90">N</emphasis>
-
<subScript id="4A3434EB7702550A2921A36225EFF966" attach="left" box="[574,668,1657,1681]" fontSize="7" pageId="5" pageNumber="90">acetyl-D-</subScript>
glucosamine,
<emphasis id="E4C4EABC7702550A2BFFA3812781F946" box="[224,242,1690,1713]" italics="true" pageId="5" pageNumber="90">N</emphasis>
-
<subScript id="4A3434EB7702550A2BE7A3822625F946" attach="left" box="[248,342,1689,1713]" fontSize="7" pageId="5" pageNumber="90">acetyl-D-</subScript>
galactosamin, 1% NaCl,
<emphasis id="E4C4EABC7702550A2979A3812505F946" box="[614,630,1690,1713]" italics="true" pageId="5" pageNumber="90">α</emphasis>
-
<subScript id="4A3434EB7702550A2960A38425E0F946" attach="none" box="[639,659,1689,1713]" fontSize="7" pageId="5" pageNumber="90">D-</subScript>
glucose, D- mannose, D- galactose, L- fucose, L- rhamnose, 1% sodium lactate, D- sorbitol, D- mannitol, D- arabitol, glycerol, troleandomycin, rifamycin SV, glyctl-L- proline, L- alanine, L- arginine, L- aspartic acid, L- glutamic acid, L- histidine, L- pyroglutamic acid, L- serine, lincomycin, D- galacturonic acid, L- galactonic acid lactone, D- gluconic acid, D- glucuronic acid, mucic acid, quinic acid, D- saccharic acid, vancomycin, tetrazolium violet, tetrazolium blue,
<emphasis id="E4C4EABC7702550A29ADA28725CCF844" box="[690,703,1948,1971]" italics="true" pageId="5" pageNumber="90">p</emphasis>
-hydroxy-pheylacetic acid, L- lactic acid, citric acid, D- malic acid, L- malic acid, bromo-succinic acid,
<emphasis id="E4C4EABC7702550A2FCDA3422392F987" box="[1234,1249,1625,1648]" italics="true" pageId="5" pageNumber="90">γ</emphasis>
-amino-butryric acid,
<emphasis id="E4C4EABC7702550A287BA3622400F966" box="[868,883,1657,1681]" italics="true" pageId="5" pageNumber="90">β</emphasis>
-
<subScript id="4A3434EB7702550A2865A3622499F978" attach="left" box="[890,1002,1657,1681]" fontSize="7" pageId="5" pageNumber="90">hydroxy-D</subScript>
,
<subScript id="4A3434EB7702550A28E5A364237FF966" attach="right" box="[1018,1036,1657,1681]" fontSize="7" pageId="5" pageNumber="90">L-</subScript>
butyric acid, propionic acid, acetic acid, formic acid and aztreonam; weak positive for
<subScript id="4A3434EB7702550A2E22A3842222F946" attach="right" box="[1341,1361,1689,1713]" fontSize="7" pageId="5" pageNumber="90">D-</subScript>
fructose, D- fucose, fusidic acid, D- serine, myo-inositol, D- glucose-6-PO
<subScript id="4A3434EB7702550A2885A3FA24D0F905" attach="left" box="[922,931,1761,1778]" fontSize="7" pageId="5" pageNumber="90">4</subScript>
, D- fructose-6-PO
<subScript id="4A3434EB7702550A2F7DA3FA2318F905" attach="right" box="[1122,1131,1761,1778]" fontSize="7" pageId="5" pageNumber="90">4</subScript>
, guanidine HCl, niaproof 4, methyl pyruvate,
<emphasis id="E4C4EABC7702550A2F19A3E12365F8E6" box="[1030,1046,1786,1809]" italics="true" pageId="5" pageNumber="90">α</emphasis>
-keto-glutaric acid, potassium tellurite, tween40,
<emphasis id="E4C4EABC7702550A28C4A2002498F8C5" box="[987,1003,1819,1842]" italics="true" pageId="5" pageNumber="90">α</emphasis>
-hydroxy-butyric acid and acetoacetic acid; but negative for dextrin, D- maltose, D- cellobiolose, gentiobiose, sucrose, D- turanose, stachyose, D- raffinose,
<emphasis id="E4C4EABC7702550A2836A260244AF865" box="[809,825,1915,1938]" italics="true" pageId="5" pageNumber="90">α</emphasis>
-
<subScript id="4A3434EB7702550A285DA29A2424F864" attach="none" box="[834,855,1915,1939]" fontSize="7" pageId="5" pageNumber="90">D-</subScript>
lactose,
<subScript id="4A3434EB7702550A28AAA29A24BAF864" attach="right" box="[949,969,1915,1939]" fontSize="7" pageId="5" pageNumber="90">D-</subScript>
melibiose,
<emphasis id="E4C4EABC7702550A2F5AA2602327F864" box="[1093,1108,1915,1939]" italics="true" pageId="5" pageNumber="90">β</emphasis>
-
<subScript id="4A3434EB7702550A2F44A26023B5F864" attach="left" box="[1115,1222,1915,1939]" fontSize="7" pageId="5" pageNumber="90">methyl-D-</subScript>
glucoside,
<subScript id="4A3434EB7702550A2E5FA29A2226F864" attach="right" box="[1344,1365,1915,1939]" fontSize="7" pageId="5" pageNumber="90">D-</subScript>
salicin,
<emphasis id="E4C4EABC7702550A2846A2872418F844" box="[857,875,1948,1971]" italics="true" pageId="5" pageNumber="90">N</emphasis>
-acetyl-
<emphasis id="E4C4EABC7702550A28A2A28024BFF844" box="[957,972,1947,1971]" italics="true" pageId="5" pageNumber="90">β</emphasis>
-mannosamin,
<emphasis id="E4C4EABC7702550A2F72A287230CF844" box="[1133,1151,1948,1971]" italics="true" pageId="5" pageNumber="90">N</emphasis>
-acetyl neuraminic acid, 4% NaCl, 8% NaCl, 3-methyl-glucose, inosine,
<subScript id="4A3434EB7701550929A9A30025BAF9DB" attach="right" box="[694,713,1557,1580]" fontSize="7" pageId="6" pageNumber="91">D-</subScript>
aspartic acid, D- serine, minocycline, gelatin, pectin, glucuronamide, D- lactic acid methyl ester, nalidixic acid, lithium chloride,
<emphasis id="E4C4EABC770155092A0BA36D2657F97A" box="[276,292,1654,1677]" italics="true" pageId="6" pageNumber="91">α</emphasis>
-keto butyric acid, sodium butyrate and sodium bromate. In API 20NE test, positive for urease; weak positive for
<emphasis id="E4C4EABC770155092A2AA3AD2637F939" box="[309,324,1718,1742]" italics="true" pageId="6" pageNumber="91">β</emphasis>
-galactosidase; but negative for reduction of nitrates (NO
<subScript id="4A3434EB770155092A4DA3C52628F918" attach="left" box="[338,347,1758,1775]" fontSize="7" pageId="6" pageNumber="91">3</subScript>
) to nitrite (NO
<subScript id="4A3434EB77015509291EA3C52579F918" attach="left" box="[513,522,1758,1775]" fontSize="7" pageId="6" pageNumber="91">2</subScript>
<superScript id="21C59BE6770155092915A3CF2567F916" attach="right" box="[522,532,1748,1761]" fontSize="7" pageId="6" pageNumber="91">-</superScript>
), reduction of nitrates (NO
<subScript id="4A3434EB770155092BC2A3E42795F8E7" attach="right" box="[221,230,1791,1808]" fontSize="7" pageId="6" pageNumber="91">3</subScript>
) to nitrogen (N
<subScript id="4A3434EB770155092A93A3E426E6F8E7" attach="right" box="[396,405,1791,1808]" fontSize="7" pageId="6" pageNumber="91">2</subScript>
), indole production on tryptophan, glucose fermentation, esculin hydrolysis, gelatin hydrolysis and arginine dihydrolase. D- Glucose, L- arabinose, D- mannose, D- mannitol, potassium gluconate, adipic acid, malic acid, trisodium citrate and phenylacetic acid were utilized whereas,
<emphasis id="E4C4EABC770155092A73A282260DF847" box="[364,382,1945,1968]" italics="true" pageId="6" pageNumber="91">N</emphasis>
-acetyl-D- glucosamine (weak), capric acid (weak) were utilized; but D- maltose were not utilized. In API 32GN test,
<subScript id="4A3434EB770155092F02A3002343F9DA" attach="right" box="[1053,1072,1557,1581]" fontSize="7" pageId="6" pageNumber="91">L-</subScript>
rhamnose,
<emphasis id="E4C4EABC770155092FB2A30D23CCF9DA" box="[1197,1215,1558,1581]" italics="true" pageId="6" pageNumber="91">N</emphasis>
-acetyl-glucosamine, D- ribose, inositol, D- mannitol, D- glucose, D- fucose, D- sorbitol, L- arabinose, L- histidine, potassium 2-ketogluconate, L- proline, sodium acetate, lactic acid, L- alanine, potassium 5-ketogluconate,
<subScript id="4A3434EB770155092F38A387234BF959" attach="right" box="[1063,1080,1686,1710]" fontSize="7" pageId="6" pageNumber="91">L-</subScript>
serine, propionic acid, capric acid, valeric acid, 3-hydroxybutyric acid, 4-hydroxybenzoic acid were utilized, D- saccharose (sucrose), D- maltose, itaconic acid, suberic acid, sodium malonate, glycogen, 3-hydroxybenzoic acid, salicin, D- melibiose, trisodium citrate were not utilized.
</paragraph>
</subSubSection>
<caption id="82CF66267702550A2B8FA0BC242FFA05" ID-DOI="http://doi.org/10.5281/zenodo.13140536" ID-Zenodo-Dep="13140536" httpUri="https://zenodo.org/record/13140536/files/figure.png" pageId="5" pageNumber="90" startId="5.[144,177,1447,1469]" targetBox="[364,1193,264,1414]" targetPageId="5" targetType="figure">
<paragraph id="D60F36AE7702550A2B8FA0BC242FFA05" blockId="5.[144,1414,1447,1522]" pageId="5" pageNumber="90">
<emphasis id="E4C4EABC7702550A2B8FA0BC27BEFA4B" bold="true" box="[144,205,1447,1469]" pageId="5" pageNumber="90">Fig. 4.</emphasis>
Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the species
<taxonomicName id="11B04D2D7702550A291DA0D925C8FA20" box="[514,699,1474,1495]" class="Betaproteobacteria" family="Comamonadaceae" genus="Variovorax" kingdom="Bacteria" order="Burkholderiales" pageId="5" pageNumber="90" phylum="Proteobacteria" rank="species" species="gossypii">
<emphasis id="E4C4EABC7702550A291DA0D925C8FA20" box="[514,699,1474,1495]" italics="true" pageId="5" pageNumber="90">Variovorax gossypii</emphasis>
</taxonomicName>
. Bootstrap values (&gt;70%) are shown above nodes for the neighbor-joining methods. Bar: 0.01 and 0.02 substitutions per nucleotide position, respectively.
</paragraph>
</caption>
<caption id="82CF6626770155092BB1A098243EFA38" ID-DOI="http://doi.org/10.5281/zenodo.13140539" ID-Zenodo-Dep="13140539" httpUri="https://zenodo.org/record/13140539/files/figure.png" pageId="6" pageNumber="91" startId="6.[174,207,1411,1433]" targetBox="[392,1237,262,1380]" targetPageId="6" targetType="figure">
<paragraph id="D60F36AE770155092BB1A098243EFA38" blockId="6.[174,1444,1411,1487]" pageId="6" pageNumber="91">
<emphasis id="E4C4EABC770155092BB1A0982798FA6E" bold="true" box="[174,235,1411,1433]" pageId="6" pageNumber="91">Fig. 5.</emphasis>
Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the species
<taxonomicName id="11B04D2D77015509290BA08525C1FA43" box="[532,690,1438,1460]" class="Betaproteobacteria" family="Oxalobacteraceae" genus="Massilia" kingdom="Bacteria" order="Burkholderiales" pageId="6" pageNumber="91" phylum="Proteobacteria" rank="species" species="neuiana">
<emphasis id="E4C4EABC77015509290BA08525C1FA43" box="[532,690,1438,1460]" italics="true" pageId="6" pageNumber="91">Massilia neuiana</emphasis>
</taxonomicName>
. Bootstrap values (&gt;70%) are shown above nodes for the neighbor-joining methods. Bar: 0.01 and 0.02 substitutions per nucleotide position, respectively.
</paragraph>
</caption>
<subSubSection id="9EAA6525770155092841A243248FF847" pageId="6" pageNumber="91" type="description">
<paragraph id="D60F36AE770155092841A243248FF847" blockId="6.[839,1444,1557,1968]" pageId="6" pageNumber="91">
Strain BT368 (
<emphasis id="E4C4EABC770155092F1BA24C236BF898" bold="true" box="[1028,1048,1879,1903]" pageId="6" pageNumber="91">=</emphasis>
NIBRBAC000503025) was isolated from a soil sample, Gyeongju City in
<collectingRegion id="1474F84C770155092FECA26324DAF847" country="South Korea" name="Gyeongbuk" pageId="6" pageNumber="91">Gyeongsangbuk Province</collectingRegion>
,
<collectingCountry id="AEA7763E7701550928ACA282248BF847" box="[947,1016,1945,1968]" name="South Korea" pageId="6" pageNumber="91">Korea</collectingCountry>
.
</paragraph>
</subSubSection>
</treatment>
</document>