172 lines
16 KiB
XML
172 lines
16 KiB
XML
<document id="120135C31B6913B0870B98FA9D9C5554" ID-DOI="10.12651/JSR.2020.9.2.085" ID-ISSN="2713-8615" ID-Zenodo-Dep="13140525" IM.bibliography_approvedBy="felipe" IM.illustrations_approvedBy="felipe" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.taxonomicNames_approvedBy="felipe" IM.treatments_approvedBy="felipe" checkinTime="1722403497596" checkinUser="felipe" docAuthor="Han, Joo Hyun, Maeng, Soohyun, Park, Yuna, Lee, Sang Eun, Lee, Byoung-Hee & Kim, Ki-eun Lee and Myung Kyum" docDate="2020" docId="5E1987B8770055072B8FA301248FF8C4" docLanguage="en" docName="JSpeciesRes.9.2.85-104.pdf" docOrigin="Journal of Species Research 9 (2)" docStyle="DocumentStyle:4D398BFF45FF8CA9E08F546BB06AE372.2:JSpeciesRes.2012-.journal_article" docStyleId="4D398BFF45FF8CA9E08F546BB06AE372" docStyleName="JSpeciesRes.2012-.journal_article" docStyleVersion="2" docTitle="Variovorax gossypii BT" docType="treatment" docVersion="2" lastPageNumber="93" masterDocId="A220FFC07707550F2B1FA51B2773FFF7" masterDocTitle="Identification of 12 radiation-resistant bacterial species in the phylum Proteobacteria new to Korea" masterLastPageNumber="104" masterPageNumber="85" pageNumber="92" updateTime="1722403955945" updateUser="ExternalLinkService" zenodo-license-document="CC-BY-4.0">
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<mods:mods id="2B42595CF6799B20F0F3213D4A0C2F84" xmlns:mods="http://www.loc.gov/mods/v3">
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<mods:titleInfo id="6998DCA9CDBF632EBDBDF75BFE284E57">
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<mods:title id="347322A6E79F985EAA7ECC164C9CF27F">Identification of 12 radiation-resistant bacterial species in the phylum Proteobacteria new to Korea</mods:title>
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<mods:name id="AFDFACC6049A793E9B9BD4FCBC9E55E9" type="personal">
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<mods:roleTerm id="71E8EB2CCC7531BD08489E35075706D0">Author</mods:roleTerm>
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<mods:namePart id="E4A4C35897887B51A24A57755C0750B4">Han, Joo Hyun</mods:namePart>
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<mods:affiliation id="F039E560742B6FC5F481109F54E499E7">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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<mods:roleTerm id="198A445AB724E0B65103AF542DFCF70A">Author</mods:roleTerm>
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<mods:namePart id="8875A0AE39C2DA9C3285955B3B0D64AF">Maeng, Soohyun</mods:namePart>
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<mods:affiliation id="C18384ACE68FC80EFB44906529870F47">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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<mods:namePart id="5E83A99CAB448B5EFA63F783D9763906">Park, Yuna</mods:namePart>
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<mods:affiliation id="835B98724ADFA5607128A2B391180C31">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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</mods:name>
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<mods:name id="FB125189FF064043F1FA1C0DA853BFB5" type="personal">
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<mods:roleTerm id="62A21E071E81A8E390690B5762A01654">Author</mods:roleTerm>
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<mods:namePart id="3125AB142578B8BD72C5B6484CFAC10B">Lee, Sang Eun</mods:namePart>
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<mods:affiliation id="DBAFA186D883910A3E65FB560C820037">Department of Bio & Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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<mods:namePart id="B21995CAABE517F5ED7B69930AD73EEE">Lee, Byoung-Hee</mods:namePart>
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<mods:affiliation id="9BE81CCC2C0D49B8503B7B8A3CFD0210">Environmental Research Complex, National Institute of Biological Resources, Incheon 22689, Republic of Korea</mods:affiliation>
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<mods:namePart id="70BC8CBDC80345B8AEABB046A880DEAF">Kim, Ki-eun Lee and Myung Kyum</mods:namePart>
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<mods:title id="5BA29986AC07B3D954A1D392F8314AB7">Journal of Species Research</mods:title>
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<mods:part id="36E4F44C8346F3480F168734446EC25B">
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<mods:date id="492899A771CDC8C9FA753E0454F62730">2020</mods:date>
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<mods:detail id="A08D1C3AFF4EC212A5C906FFFCF70464" type="volume">
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<mods:number id="5CEFDBF41BB24DD04AF65A27E2996299">9</mods:number>
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<mods:start id="3CEF2EB8B9204D9317BC46CD2D0187A0">85</mods:start>
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<mods:end id="914BE40B2FDC001E2BAAA97E0A72C1A0">104</mods:end>
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<mods:classification id="C043FCB882F7E1D8A616E63CCE5413D2">journal article</mods:classification>
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<mods:identifier id="D26E452081388052BE62D4B451A6B5EF" type="DOI">10.12651/JSR.2020.9.2.085</mods:identifier>
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<mods:identifier id="EE3F37550C96B951B3AE17E0CB2D3187" type="ISSN">2713-8615</mods:identifier>
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<mods:identifier id="F8DEA6AA19F19AA3261CDED5B8CE223B" type="Zenodo-Dep">13140525</mods:identifier>
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<treatment id="5E1987B8770055072B8FA301248FF8C4" ID-DOI="http://doi.org/10.5281/zenodo.13140521" ID-Zenodo-Dep="13140521" LSID="urn:lsid:plazi:treatment:5E1987B8770055072B8FA301248FF8C4" httpUri="http://treatment.plazi.org/id/5E1987B8770055072B8FA301248FF8C4" lastPageId="8" lastPageNumber="93" pageId="7" pageNumber="92">
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<subSubSection id="9EAA6525770055072B8FA3012380F924" lastPageId="8" lastPageNumber="93" pageId="7" pageNumber="92" type="nomenclature">
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<paragraph id="D60F36AE770055082B8FA3012512F9C5" blockId="7.[144,609,1562,1586]" box="[144,609,1562,1586]" pageId="7" pageNumber="92">
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<heading id="8D4781C2770055082B8FA3012512F9C5" box="[144,609,1562,1586]" fontSize="10" level="2" pageId="7" pageNumber="92" reason="5">
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<emphasis id="E4C4EABC770055082B8FA3012512F9C5" bold="true" box="[144,609,1562,1586]" pageId="7" pageNumber="92">
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Description of
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<taxonomicName id="11B04D2D770055082A28A301254BF9C5" authority="BT" authorityName="BT" box="[311,568,1562,1586]" class="Betaproteobacteria" family="Comamonadaceae" genus="Variovorax" kingdom="Bacteria" order="Burkholderiales" pageId="7" pageNumber="92" phylum="Proteobacteria" rank="species" species="gossypii">
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<emphasis id="E4C4EABC770055082A28A301257DF9C5" bold="true" box="[311,526,1562,1586]" italics="true" pageId="7" pageNumber="92">Variovorax gossypii</emphasis>
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BT
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</taxonomicName>
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370
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</emphasis>
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</heading>
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</paragraph>
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<paragraph id="D60F36AE770055072BB9A3402380F924" blockId="7.[144,749,1627,1974]" lastBlockId="8.[839,1444,1465,1843]" lastPageId="8" lastPageNumber="93" pageId="7" pageNumber="92">
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Cells are Gram-stain-negative, flagellated, and rod-shaped. Colonies are white-colored after 3 days of incubation on R2A at 25°C. In the BIOLOG GEN III, positive for sodium bromate, pH 6, pH 5,
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<emphasis id="E4C4EABC770055082AF4A3A7268EF924" box="[491,509,1724,1747]" italics="true" pageId="7" pageNumber="92">N</emphasis>
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-acetyl-D- glucosamine,
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<emphasis id="E4C4EABC770055082B8FA3C627D1F903" box="[144,162,1757,1780]" italics="true" pageId="7" pageNumber="92">N</emphasis>
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-
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<subScript id="4A3434EB770055082BB7A3C72676F903" attach="left" box="[168,261,1756,1780]" fontSize="7" pageId="7" pageNumber="92">acetyl-D-</subScript>
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galactosamin, 1% NaCl,
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<emphasis id="E4C4EABC77005508290DA3C62551F903" box="[530,546,1757,1780]" italics="true" pageId="7" pageNumber="92">α</emphasis>
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-
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<subScript id="4A3434EB770055082934A3F9254CF903" attach="none" box="[555,575,1756,1780]" fontSize="7" pageId="7" pageNumber="92">D-</subScript>
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glucose,
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<subScript id="4A3434EB7700550829BFA3F925C6F904" attach="right" box="[672,693,1756,1779]" fontSize="7" pageId="7" pageNumber="92">D-</subScript>
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mannose, D- galactose, L- fucose, L- rhamnose, 1% sodium lactate, D- sorbitol, D- mannitol, D- arabitol, glycerol, troleandomycin, rifamycin SV, glyctl-L- proline, L- alanine, L- arginine, L- aspartic acid, L- glutamic acid, L- histidine, L- pyroglutamic acid, L- serine, lincomycin, D- galacturonic acid, L- galactonic acid lactone, D- gluconic acid, D- glucuronic acid, mucic acid, quinic acid, D- saccharic acid, vancomycin, tetrazolium violet, tetrazolium blue,
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<emphasis id="E4C4EABC770055082E53A320222AF9A5" box="[1356,1369,1595,1618]" italics="true" pageId="7" pageNumber="92">p</emphasis>
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-hydroxy-pheylacetic acid, L- lactic acid, citric acid, D- malic acid, L- malic acid, bromo-succinic acid,
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<emphasis id="E4C4EABC770055082FCDA3672392F964" box="[1234,1249,1660,1683]" italics="true" pageId="7" pageNumber="92">γ</emphasis>
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-amino-butryric acid,
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<emphasis id="E4C4EABC77005508287BA3872400F943" box="[868,883,1692,1716]" italics="true" pageId="7" pageNumber="92">β</emphasis>
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-hydroxy-D, L- butyric acid, propionic acid, acetic acid, formic acid and aztreonam; weak positive for D- fructose,
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<subScript id="4A3434EB77005508287EA3F92406F903" attach="right" box="[865,885,1756,1780]" fontSize="7" pageId="7" pageNumber="92">D-</subScript>
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fucose, fusidic acid,
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<subScript id="4A3434EB770055082F4EA3F92316F903" attach="right" box="[1105,1125,1756,1780]" fontSize="7" pageId="7" pageNumber="92">D-</subScript>
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serine, myo-inositol,
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<subScript id="4A3434EB770055082E59A3F92229F903" attach="right" box="[1350,1370,1756,1780]" fontSize="7" pageId="7" pageNumber="92">D-</subScript>
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glucose-6-PO
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<subScript id="4A3434EB770055082885A21F24D0F8E2" attach="left" box="[922,931,1796,1813]" fontSize="7" pageId="7" pageNumber="92">4</subScript>
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, D- fructose-6-PO
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<subScript id="4A3434EB770055082F7DA21F2318F8E2" attach="right" box="[1122,1131,1796,1813]" fontSize="7" pageId="7" pageNumber="92">4</subScript>
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, guanidine HCl, niaproof 4, methyl pyruvate,
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<emphasis id="E4C4EABC770055082F19A2062365F8C3" box="[1030,1046,1821,1844]" italics="true" pageId="7" pageNumber="92">α</emphasis>
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-keto-glutaric acid, potassium tellurite, tween 40,
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<emphasis id="E4C4EABC7700550828FEA2262482F8A3" box="[993,1009,1853,1876]" italics="true" pageId="7" pageNumber="92">α</emphasis>
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-hydroxy-butyric acid and acetoacetic acid; but negative for dextrin, D- maltose, D- cellobiolose, gentiobiose, sucrose, D- turanose, stachyose, D- raffinose,
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<emphasis id="E4C4EABC770055082836A285244AF842" box="[809,825,1950,1973]" italics="true" pageId="7" pageNumber="92">α</emphasis>
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-D- lactose, D- melibiose,
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<emphasis id="E4C4EABC770055082F5AA2852327F841" box="[1093,1108,1950,1974]" italics="true" pageId="7" pageNumber="92">β</emphasis>
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-methyl-D- glucoside, D- salicin,
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<emphasis id="E4C4EABC770F55072BC1A0A22783FA27" box="[222,240,1465,1488]" italics="true" pageId="8" pageNumber="93">N</emphasis>
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-acetyl-
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<emphasis id="E4C4EABC770F55072A5DA0A22622FA26" box="[322,337,1465,1489]" italics="true" pageId="8" pageNumber="93">β</emphasis>
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-mannosamin,
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<emphasis id="E4C4EABC770F55072AEDA0A22577FA27" box="[498,516,1465,1488]" italics="true" pageId="8" pageNumber="93">N</emphasis>
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-acetyl neuraminic acid, 4% NaCl, 8% NaCl, 3-methyl-glucose, inosine,
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<subScript id="4A3434EB770F550729A9A0C425BAFA07" attach="right" box="[694,713,1497,1520]" fontSize="7" pageId="8" pageNumber="93">D-</subScript>
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aspartic acid, D- aerine, minocycline, gelatin, pectin, glucuronamide, D- lactic acid methyl ester, nalidixic acid, lithium chloride,
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<emphasis id="E4C4EABC770F55072A0FA3212653F9A6" box="[272,288,1594,1617]" italics="true" pageId="8" pageNumber="93">α</emphasis>
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-keto butyric acid, sodium butyrate and sodium bromate. In API 20NE test, positive for
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<emphasis id="E4C4EABC770F5507297FA341251CF985" box="[608,623,1626,1650]" italics="true" pageId="8" pageNumber="93">β</emphasis>
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-galactosidase; weak positive for esculin hydrolysis; but negative for reduction of nitrates (NO
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<subScript id="4A3434EB770F55072AB3A3B926C6F944" attach="right" box="[428,437,1698,1715]" fontSize="7" pageId="8" pageNumber="93">3</subScript>
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) to nitrite (NO
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<subScript id="4A3434EB770F55072945A3B92510F944" attach="left" box="[602,611,1698,1715]" fontSize="7" pageId="8" pageNumber="93">2</subScript>
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<superScript id="21C59BE6770F5507297CA383251EF952" attach="right" box="[611,621,1688,1701]" fontSize="7" pageId="8" pageNumber="93">-</superScript>
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), reduction of nitrates (NO
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<subScript id="4A3434EB770F55072A32A3D92646F924" attach="left" box="[301,309,1730,1747]" fontSize="7" pageId="8" pageNumber="93">3</subScript>
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) to nitrogen (N
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<subScript id="4A3434EB770F55072AC7A3D92693F924" attach="left" box="[472,480,1730,1747]" fontSize="7" pageId="8" pageNumber="93">2</subScript>
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), indole production on tryptophan, glucose fermentation, arginine dihydrolase, urease and gelatin hydrolysis. D- Mannitol, D- maltose, D- glucose, L- arabinose (weak), D- mannose (weak), potassium gluconate (weak), adipic acid (weak), malic acid (weak) were utilized whereas,
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<emphasis id="E4C4EABC770F55072AAEA24626B0F883" box="[433,451,1885,1908]" italics="true" pageId="8" pageNumber="93">N</emphasis>
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-acetyl-D- glucosamine, capric acid, trisodium citrate and phenylacetic acid were not utilized. In API 32GN test,
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<emphasis id="E4C4EABC770F55072AA4A28626BEF843" box="[443,461,1949,1972]" italics="true" pageId="8" pageNumber="93">N</emphasis>
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-acetyl-glucosamine, D- ribose, inositol, D- saccharose (sucrose), D- maltose, glycogen, D- mannitol, D- glucose, D- melibiose, L- arabinose, sodium acetate, lactic acid, L- alanine, salicin, trisodium citrate, potassium 2-ketogluconate and L- proline were utilized whereas, L- rhamnose, itaconic acid, suberic acid, sodium malonate, potassium 5-ketogluconate, 3-hydroxybenzoic acid, L- serine, D- fucose, D- sorbitol, propionic acid, capric acid, valeric acid, L- histidine, 3-hydroxybutyric acid and 4-hydroxybenzoic acid were not utilized.
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</paragraph>
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</subSubSection>
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<caption id="82CF6626770F55072BB1A03C2496FA85" ID-DOI="http://doi.org/10.5281/zenodo.13140543" ID-Zenodo-Dep="13140543" httpUri="https://zenodo.org/record/13140543/files/figure.png" pageId="8" pageNumber="93" startId="8.[174,207,1319,1341]" targetBox="[400,1208,259,1287]" targetPageId="8" targetType="figure">
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<paragraph id="D60F36AE770F55072BB1A03C2496FA85" blockId="8.[174,1444,1319,1394]" pageId="8" pageNumber="93">
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<emphasis id="E4C4EABC770F55072BB1A03C279FFACB" bold="true" box="[174,236,1319,1341]" pageId="8" pageNumber="93">Fig. 7.</emphasis>
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Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the species
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<taxonomicName id="11B04D2D770F5507293BA0592446FAA0" box="[548,821,1346,1367]" class="Gammaproteobacteria" family="Pseudomonadaceae" genus="Arthrobacter" kingdom="Bacteria" order="Pseudomonadales" pageId="8" pageNumber="93" phylum="Proteobacteria" rank="species" species="nitrophenolicus">
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<emphasis id="E4C4EABC770F5507293BA0592446FAA0" box="[548,821,1346,1367]" italics="true" pageId="8" pageNumber="93">Arthrobacter nitrophenolicus</emphasis>
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</taxonomicName>
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. Bootstrap values (>70%) are shown above nodes for the neighbor-joining methods. Bar: 0.01 and 0.02 substitutions per nucleotide position, respectively.
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</paragraph>
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</caption>
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<subSubSection id="9EAA6525770F55072841A3C0248FF8C4" pageId="8" pageNumber="93" type="description">
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<paragraph id="D60F36AE770F55072841A3C0248FF8C4" blockId="8.[839,1444,1465,1843]" pageId="8" pageNumber="93">
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Strain BT370 (
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<emphasis id="E4C4EABC770F55072F1BA3C0236BF904" bold="true" box="[1028,1048,1755,1779]" pageId="8" pageNumber="93">=</emphasis>
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NIBRBAC000503024) was isolated from a soil sample, Gyeongju City in
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<collectingRegion id="1474F84C770F55072FECA3E024DAF8C4" country="South Korea" name="Gyeongbuk" pageId="8" pageNumber="93">Gyeongsangbuk Province</collectingRegion>
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,
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<collectingCountry id="AEA7763E770F550728ACA207248BF8C4" box="[947,1016,1820,1843]" name="South Korea" pageId="8" pageNumber="93">Korea</collectingCountry>
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.
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</paragraph>
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</subSubSection>
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</treatment>
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</document> |