156 lines
12 KiB
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156 lines
12 KiB
XML
<document ID-DOI="10.1099/ijsem.0.004963" ID-GBIF-Dataset="9ac3ec99-58c9-4ee6-827f-295b3821ff0c" ID-ISSN="1466-5034" ID-PMC="PMC8513620" ID-PubMed="34406922" ID-Zenodo-Dep="6224196" checkinTime="1645466284856" checkinUser="felipe" docAuthor="Besaury, Ludovic, Floret, Juliette & Rémond, Caroline" docDate="2021" docId="2E7187BCFFE2FFF7FFBBFD4AB4A4FE77" docLanguage="en" docName="IntJSystEvolMicrobiol.71.8.004963.pdf" docOrigin="International Journal of Systematic and Evolutionary Microbiology (004963) 71 (8)" docSource="http://dx.doi.org/10.1099/ijsem.0.004963" docStyle="DocumentStyle:C64F0A4F4C66F6FC2AD4ED89351C6242.2:IntJSystEvolMicrobiol.2017-.journal_article" docStyleId="C64F0A4F4C66F6FC2AD4ED89351C6242" docStyleName="IntJSystEvolMicrobiol.2017-.journal_article" docStyleVersion="2" docTitle="Sphingobacterium prati Besaury & Floret & Rémond 2021, SP. NOV." docType="treatment" docVersion="7" lastPageNumber="7" masterDocId="D248FFC4FFE4FFF1FFC2FF9EB133FFFF" masterDocTitle="Sphingobacterium prati sp. nov., isolated from agricultural soil and involved in lignocellulose deconstruction" masterLastPageNumber="8" masterPageNumber="1" pageNumber="7" updateTime="1668130836609" updateUser="ExternalLinkService">
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<mods:mods xmlns:mods="http://www.loc.gov/mods/v3">
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<mods:titleInfo>
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<mods:title>Sphingobacterium prati sp. nov., isolated from agricultural soil and involved in lignocellulose deconstruction</mods:title>
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</mods:titleInfo>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Besaury, Ludovic</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Floret, Juliette</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Rémond, Caroline</mods:namePart>
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</mods:name>
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<mods:typeOfResource>text</mods:typeOfResource>
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<mods:relatedItem type="host">
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<mods:titleInfo>
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<mods:title>International Journal of Systematic and Evolutionary Microbiology</mods:title>
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</mods:titleInfo>
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<mods:part>
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<mods:date>2021</mods:date>
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<mods:detail type="series">
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<mods:title>004963</mods:title>
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</mods:detail>
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<mods:detail type="pubDate">
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<mods:number>2021-08-18</mods:number>
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</mods:detail>
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<mods:detail type="volume">
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<mods:number>71</mods:number>
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</mods:detail>
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<mods:detail type="issue">
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<mods:number>8</mods:number>
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</mods:detail>
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<mods:extent unit="page">
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<mods:start>1</mods:start>
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<mods:end>8</mods:end>
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</mods:extent>
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</mods:part>
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</mods:relatedItem>
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<mods:location>
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<mods:url>http://dx.doi.org/10.1099/ijsem.0.004963</mods:url>
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</mods:location>
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<mods:classification>journal article</mods:classification>
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<mods:identifier type="DOI">10.1099/ijsem.0.004963</mods:identifier>
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<mods:identifier type="GBIF-Dataset">9ac3ec99-58c9-4ee6-827f-295b3821ff0c</mods:identifier>
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<mods:identifier type="ISSN">1466-5034</mods:identifier>
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<mods:identifier type="PMC">PMC8513620</mods:identifier>
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<mods:identifier type="PubMed">34406922</mods:identifier>
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<mods:identifier type="Zenodo-Dep">6224196</mods:identifier>
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</mods:mods>
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<treatment ID-DOI="http://doi.org/10.5281/zenodo.6314532" ID-GBIF-Taxon="193580176" ID-Zenodo-Dep="6314532" LSID="urn:lsid:plazi:treatment:2E7187BCFFE2FFF7FFBBFD4AB4A4FE77" httpUri="http://treatment.plazi.org/id/2E7187BCFFE2FFF7FFBBFD4AB4A4FE77" lastPageNumber="7" pageId="6" pageNumber="7">
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<subSubSection pageId="6" pageNumber="7" type="nomenclature">
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<paragraph blockId="6.[120,766,724,1961]" pageId="6" pageNumber="7">
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<heading allCaps="true" bold="true" fontSize="12" level="2" pageId="6" pageNumber="7" reason="3">
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<emphasis bold="true" pageId="6" pageNumber="7">
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DESCRIPTION OF
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<taxonomicName authority="Besaury & Floret & Rémond, 2021" authorityName="Besaury & Floret & Rémond" authorityYear="2021" box="[370,750,724,753]" class="Sphingobacteriia" family="Sphingobacteriaceae" genus="Sphingobacterium" kingdom="Bacteria" order="Sphingobacteriales" pageId="6" pageNumber="7" phylum="Bacteroidetes" rank="species" species="prati" status="sp. nov.">
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<emphasis bold="true" box="[370,750,724,753]" italics="true" pageId="6" pageNumber="7">SPHINGOBACTERIUM PRATI</emphasis>
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</taxonomicName>
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<taxonomicNameLabel box="[121,237,761,790]" pageId="6" pageNumber="7" rank="species">SP. NOV.</taxonomicNameLabel>
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</emphasis>
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</heading>
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</paragraph>
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</subSubSection>
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<subSubSection box="[121,753,803,828]" pageId="6" pageNumber="7" type="etymology">
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<paragraph blockId="6.[120,766,724,1961]" box="[121,753,803,828]" pageId="6" pageNumber="7">
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<taxonomicName authorityName="Besaury & Floret & Rémond" authorityYear="2021" box="[121,366,803,827]" class="Sphingobacteriia" family="Sphingobacteriaceae" genus="Sphingobacterium" kingdom="Bacteria" order="Sphingobacteriales" pageId="6" pageNumber="7" phylum="Bacteroidetes" rank="species" species="prati">
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<emphasis box="[121,366,803,827]" italics="true" pageId="6" pageNumber="7">Sphingobacterium prati</emphasis>
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</taxonomicName>
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(pra'ti L. gen. n.
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<taxonomicName authorityName="Besaury & Floret & Rémond" authorityYear="2021" box="[545,595,804,827]" class="Sphingobacteriia" family="Sphingobacteriaceae" genus="Sphingobacterium" kingdom="Bacteria" order="Sphingobacteriales" pageId="6" pageNumber="7" phylum="Bacteroidetes" rank="species" species="prati">
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<emphasis box="[545,595,804,827]" italics="true" pageId="6" pageNumber="7">prati</emphasis>
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</taxonomicName>
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of a meadow).
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</paragraph>
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</subSubSection>
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<subSubSection pageId="6" pageNumber="7" type="description">
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<paragraph blockId="6.[120,766,724,1961]" lastBlockId="6.[827,1468,183,393]" pageId="6" pageNumber="7">
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Cells are Gram-stain-negative, non-motile, non-sporeforming, strictly aerobic rods, 0.8–1.7 µm long and 0.7–0.9 µm wide. After 2 days incubation on LB agar, colonies are 1.0–
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<quantity box="[315,398,942,966]" metricMagnitude="-3" metricUnit="m" metricValue="2.5" pageId="6" pageNumber="7" unit="mm" value="2.5">2.5 mm</quantity>
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in diameter, slightly yellowish, convex, circular and smooth. Growth occurs at 15–37 °C (optimum, 30 °C), pH 6.0–9.0 (optimum, pH 7.0) and with 0–4% NaCl (optimum, 0 %). Growth occurs on nutrient agar and LB agar, but not on MacConkey agar. Positive for catalase and oxidase. Acid is produced from sodium lactate, acetoacetic acid, cellobiose, dextrin, D-fructose,D-galactose, D-galacturonic acid,D-gluconic acid, maltose, D-mannose, melibiose, D-salicin, turanose, gelatin, gentiobiose, glycyl-L-proline, guanidine HCl, L-fucose, L-rhamnose,
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<emphasis box="[121,140,1252,1275]" italics="true" pageId="6" pageNumber="7">N</emphasis>
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-acetyl-D-galactosamine,
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<emphasis box="[438,457,1252,1275]" italics="true" pageId="6" pageNumber="7">N</emphasis>
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-acetyl-β-D-mannosamine, nalidixic acid, pectin, sodium butyrate, sucrose, D-glucose and lactose. Acid is not produced from 3-methyl-glucose, bromo-succinic acid, citric acid, D-arabitol,D-aspartic acid, D-fructose-6-
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<specimenCode box="[270,313,1375,1405]" collectionCode="PO" country="Russia" name="Collection of the Zoological Institute of the Russian Academy of Sciences" pageId="6" pageNumber="7">
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PO
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<subScript attach="right" box="[306,313,1391,1405]" fontSize="6" pageId="6" pageNumber="7">4</subScript>
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</specimenCode>
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, D-fucose,D-glucose-6-
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<specimenCode box="[576,619,1375,1405]" collectionCode="PO" country="Russia" name="Collection of the Zoological Institute of the Russian Academy of Sciences" pageId="6" pageNumber="7">
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PO
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<subScript attach="right" box="[612,619,1391,1405]" fontSize="6" pageId="6" pageNumber="7">4</subScript>
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</specimenCode>
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, D-gluronicacid, D-lactic acid, methyl ester, D-malic acid,D-mannitol, raffinose, D-saccharic acid,D-serine,D-sorbitol, trehalose, formic acid, fusidic acid, glucuronamide, glycerol, inosine, L-alanine, L-arginine, L-aspartic acid, L-galactonic acid, lactone, L-glutamic acid,L-histidine,L-lactic acid,L-malic acid, L-pyroglutamic acid,L-serine, methyl pyruvate, mucic acid, myo-anositol,
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<emphasis box="[338,357,1592,1615]" italics="true" pageId="6" pageNumber="7">N</emphasis>
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-acetyl neuraminic acid,
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<emphasis box="[631,650,1592,1615]" italics="true" pageId="6" pageNumber="7">N</emphasis>
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-acetyl-Dglucosamine,
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<emphasis box="[271,284,1623,1646]" italics="true" pageId="6" pageNumber="7">p</emphasis>
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-hydroxy-phenylacetic acid, propionic acid, quinic acid, stachyose, Tween 40, α-hydroxy-butyric acid, α-keto-butyric acid, α-keto-glutaric acid, β-hydroxy-D acid, L-butyric acid, methyl β-D-glucoside and γ-amino-butyric acid. Resistant to aztreonam, rifamycin and sensitive to lincomycin, minocycline, troleandomycin and vancomycin. Strain arapr2
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<superScript attach="left" box="[274,284,1806,1820]" fontSize="6" pageId="6" pageNumber="7">
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<collectionCode box="[274,284,1806,1820]" name="Tavera, Department of Geology and Geophysics" pageId="6" pageNumber="7">T</collectionCode>
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</superScript>
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harbours β-galactosidase but not lysine decarboxylase, ornithine decarboxylase, urease and tryptophane desaminase (
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<specimenCode box="[359,440,1870,1894]" collectionCode="API" pageId="6" pageNumber="7">API 10</specimenCode>
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S). Strain arapr2
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<superScript attach="left" box="[618,628,1868,1882]" fontSize="6" pageId="6" pageNumber="7">
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<collectionCode box="[618,628,1868,1882]" name="Tavera, Department of Geology and Geophysics" pageId="6" pageNumber="7">T</collectionCode>
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</superScript>
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can oxidize glucose and produce NO2 but cannot oxidize arabinose or produce H
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<subScript attach="both" box="[277,285,1947,1961]" fontSize="6" pageId="6" pageNumber="7">2</subScript>
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S (
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<specimenCode box="[315,400,1931,1955]" collectionCode="API" pageId="6" pageNumber="7">API 10</specimenCode>
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S). The predominant fatty acids are iso-C
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<subScript attach="right" box="[932,961,199,213]" fontSize="6" pageId="6" pageNumber="7">15:0</subScript>
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, C
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<subScript attach="left" box="[994,1024,199,213]" fontSize="6" pageId="6" pageNumber="7">16:0</subScript>
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and C
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<subScript attach="left" box="[1101,1131,199,213]" fontSize="6" pageId="6" pageNumber="7">17:0</subScript>
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iso 3-OH. Menaquinone-7 is the major respiratory quinone. The major polar lipids are glycolipid, aminolipid, phospholipid, phosphatidylethanolamine, phosphoaminolipid and phosphoaminoglycolipid.
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</paragraph>
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</subSubSection>
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<subSubSection pageId="6" pageNumber="7" type="description">
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<paragraph blockId="6.[827,1468,183,393]" pageId="6" pageNumber="7">
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<materialsCitation ID-GBIF-Occurrence="3472793301" country="France" location="near Reims" pageId="6" pageNumber="7" specimenCode="arapr2T" specimenCount="1" typeStatus="holotype">
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The
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<typeStatus box="[875,922,307,331]" pageId="6" pageNumber="7">type</typeStatus>
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strain,
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<specimenCode box="[1007,1089,305,331]" pageId="6" pageNumber="7">
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arapr2
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<superScript attach="left" box="[1079,1089,305,319]" fontSize="6" pageId="6" pageNumber="7">T</superScript>
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</specimenCode>
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(CIP 111872
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<superScript attach="right" box="[1236,1246,305,319]" fontSize="6" pageId="6" pageNumber="7">T</superScript>
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=LMG 31848
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<superScript attach="none" box="[1393,1403,305,319]" fontSize="6" pageId="6" pageNumber="7">T</superScript>
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), was isolated from meadow soil collected
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<location LSID="urn:lsid:plazi:treatment:2E7187BCFFE2FFF7FFBBFD4AB4A4FE77:A3076071FFE2FFF7FB1FFECCB46EFE96" box="[1245,1373,337,361]" country="France" name="near Reims" pageId="6" pageNumber="7">near Reims</location>
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,
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<collectingCountry box="[1387,1465,338,361]" name="France" pageId="6" pageNumber="7">France</collectingCountry>
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. The DNA G+C content of the type strain is 40.4 mol%.
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</materialsCitation>
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</paragraph>
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</subSubSection>
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</treatment>
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</document> |