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<figureCitation id="131A2A39FFBBFF8AFBBD42D6FFFBFD18" box="[1071,1154,733,757]" captionStart="Fig" captionStartId="4.[174,205,1897,1916]" captionTargetBox="[275,1351,251,1872]" captionTargetId="figure-5@4.[261,1364,234,1885]" captionTargetPageId="4" captionText="Fig. 3. Acryptolaria minuta Watson, 2003: A, hydrothecae. Acryptolaria operculata Stepanjants, 1979; B, distal part of hydrotheca. Acryptolaria seamountensis sp. nov.: C−F, hydrothecae and hydrothecal disposition; G, putative macrobasic mastigophore (arrow). Acryptolaria sp.: H, hydrothecae and hydrothecal disposition. Scale bars: A−F, H = 200 μm; G = 10 μm." pageId="3" pageNumber="4">Fig. 3A</figureCitation>
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<figureCitation id="131A2A39FFBBFF8AFBBD42D6FFFBFD18" box="[1071,1154,733,757]" captionStart="Fig" captionStartId="4.[174,205,1897,1916]" captionTargetBox="[275,1351,251,1872]" captionTargetId="figure-5@4.[261,1364,234,1885]" captionTargetPageId="4" captionText="Fig. 3. Acryptolaria minuta Watson, 2003: A, hydrothecae. Acryptolaria operculata Stepanjants, 1979; B, distal part of hydrotheca. Acryptolaria seamountensis sp. nov.: C−F, hydrothecae and hydrothecal disposition; G, putative macrobasic mastigophore (arrow). Acryptolaria sp.: H, hydrothecae and hydrothecal disposition. Scale bars: A−F, H = 200 μm; G = 10 μm." figureDoi="http://doi.org/10.5281/zenodo.12831470" httpUri="https://zenodo.org/record/12831470/files/figure.png" pageId="3" pageNumber="4">Fig. 3A</figureCitation>
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<treatment id="C9395B008B4CFFCBF9CB12B8D44D4DD8" LSID="urn:lsid:plazi:treatment:C9395B008B4CFFCBF9CB12B8D44D4DD8" httpUri="http://treatment.plazi.org/id/C9395B008B4CFFCBF9CB12B8D44D4DD8" lastPageId="21" lastPageNumber="21" pageId="20" pageNumber="21">
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<subSubSection id="098AB99D8B4CFFCAF9CB12B8D37F4F78" pageId="20" pageNumber="21" type="nomenclature">
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|
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@ -146,7 +147,7 @@ clustered together with several populations of their “
|
|||
”. By re-analyzing their sequences using longer lengths (
|
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<tableCitation id="0C12DFAD8B4CFFCAFEB815F8D3414998" box="[1278,1366,1437,1461]" captionStart="Table 3" captionStartId="6.[174,237,502,526]" captionText="Table 3. Geographic positions of the collection sites in the main islands of Japan, with the species of Neocaridina collected in this study" pageId="20" pageNumber="21">Table 3</tableCitation>
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), along with ours, the results (
|
||||
<figureCitation id="D9ABF6938B4CFFCAFE0915D8D28449F8" box="[1103,1171,1469,1493]" captionStart="Fig" captionStartId="9.[136,167,1896,1915]" captionTargetBox="[168,1376,255,1859]" captionTargetId="graphics-6@9.[168,996,269,1850]" captionTargetPageId="9" captionText="Fig. 3. Bayesian inference (BI) tree for species of the genus Neocaridina from the East Asia Arc and the related taxa from East Asia, based on the cytochrome c oxidase subunit I (COI) gene. Probability values at the nodes represent support values for BI and maximum likelihood (ML). Only support values> 50% are shown on the nodes. For haplotype names, see table 1. *, sequences downloaded from GenBank." pageId="20" pageNumber="21">Fig. 3</figureCitation>
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<figureCitation id="D9ABF6938B4CFFCAFE0915D8D28449F8" box="[1103,1171,1469,1493]" captionStart="Fig" captionStartId="9.[136,167,1896,1915]" captionTargetBox="[168,1376,255,1859]" captionTargetId="graphics-6@9.[168,996,269,1850]" captionTargetPageId="9" captionText="Fig. 3. Bayesian inference (BI) tree for species of the genus Neocaridina from the East Asia Arc and the related taxa from East Asia, based on the cytochrome c oxidase subunit I (COI) gene. Probability values at the nodes represent support values for BI and maximum likelihood (ML). Only support values> 50% are shown on the nodes. For haplotype names, see table 1. *, sequences downloaded from GenBank." figureDoi="http://doi.org/10.5281/zenodo.12831354" httpUri="https://zenodo.org/record/12831354/files/figure.png" pageId="20" pageNumber="21">Fig. 3</figureCitation>
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) indicate that
|
||||
<taxonomicName id="869091958B4CFFCAFF7115DBD3BC49F8" authorityName="Shih, Cai, Niwa & Nakahara" authorityYear="2017" box="[1335,1451,1469,1493]" class="Malacostraca" family="Atyidae" genus="Neocaridina" higherTaxonomySource="GBIF" kingdom="Animalia" order="Decapoda" pageId="20" pageNumber="21" phylum="Arthropoda" rank="species" species="ikiensis">
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<emphasis id="73E436048B4CFFCAFF7115DBD3BC49F8" box="[1335,1451,1469,1493]" italics="true" pageId="20" pageNumber="21">N. ikiensis</emphasis>
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|
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@ -166,7 +167,7 @@ and
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|||
<emphasis id="73E436048B4CFFCAFEC51698D3164B38" box="[1155,1281,1789,1813]" italics="true" pageId="20" pageNumber="21">denticulata</emphasis>
|
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</taxonomicName>
|
||||
that our study recognizes based on both genetic and morphological data (cf.
|
||||
<figureCitation id="D9ABF6938B4CFFCAF9F61758D5E74B78" box="[944,1008,1853,1877]" captionStart="Fig" captionStartId="9.[136,167,1896,1915]" captionTargetBox="[168,1376,255,1859]" captionTargetId="graphics-6@9.[168,996,269,1850]" captionTargetPageId="9" captionText="Fig. 3. Bayesian inference (BI) tree for species of the genus Neocaridina from the East Asia Arc and the related taxa from East Asia, based on the cytochrome c oxidase subunit I (COI) gene. Probability values at the nodes represent support values for BI and maximum likelihood (ML). Only support values> 50% are shown on the nodes. For haplotype names, see table 1. *, sequences downloaded from GenBank." pageId="20" pageNumber="21">Fig. 3</figureCitation>
|
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<figureCitation id="D9ABF6938B4CFFCAF9F61758D5E74B78" box="[944,1008,1853,1877]" captionStart="Fig" captionStartId="9.[136,167,1896,1915]" captionTargetBox="[168,1376,255,1859]" captionTargetId="graphics-6@9.[168,996,269,1850]" captionTargetPageId="9" captionText="Fig. 3. Bayesian inference (BI) tree for species of the genus Neocaridina from the East Asia Arc and the related taxa from East Asia, based on the cytochrome c oxidase subunit I (COI) gene. Probability values at the nodes represent support values for BI and maximum likelihood (ML). Only support values> 50% are shown on the nodes. For haplotype names, see table 1. *, sequences downloaded from GenBank." figureDoi="http://doi.org/10.5281/zenodo.12831354" httpUri="https://zenodo.org/record/12831354/files/figure.png" pageId="20" pageNumber="21">Fig. 3</figureCitation>
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).
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</paragraph>
|
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<paragraph id="412FEA168B4CFFCBF9C91738D44D4DD8" blockId="20.[850,1452,829,1973]" lastBlockId="21.[136,738,253,502]" lastPageId="21" lastPageNumber="22" pageId="20" pageNumber="21">
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|
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@ -185,7 +186,7 @@ is sister to another group comprising
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<emphasis id="73E436048B4CFFCAFF7B171BD3BC4BB8" box="[1341,1451,1917,1941]" italics="true" pageId="20" pageNumber="21">N. ikiensis</emphasis>
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</taxonomicName>
|
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and the previously mentioned Machida population (
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<figureCitation id="D9ABF6938B4CFFCBFFC617F8D6804D3B" captionStart="Fig" captionStartId="9.[136,167,1896,1915]" captionTargetBox="[168,1376,255,1859]" captionTargetId="graphics-6@9.[168,996,269,1850]" captionTargetPageId="9" captionText="Fig. 3. Bayesian inference (BI) tree for species of the genus Neocaridina from the East Asia Arc and the related taxa from East Asia, based on the cytochrome c oxidase subunit I (COI) gene. Probability values at the nodes represent support values for BI and maximum likelihood (ML). Only support values> 50% are shown on the nodes. For haplotype names, see table 1. *, sequences downloaded from GenBank." lastPageId="21" lastPageNumber="22" pageId="20" pageNumber="21">Fig. 3</figureCitation>
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<figureCitation id="D9ABF6938B4CFFCBFFC617F8D6804D3B" captionStart="Fig" captionStartId="9.[136,167,1896,1915]" captionTargetBox="[168,1376,255,1859]" captionTargetId="graphics-6@9.[168,996,269,1850]" captionTargetPageId="9" captionText="Fig. 3. Bayesian inference (BI) tree for species of the genus Neocaridina from the East Asia Arc and the related taxa from East Asia, based on the cytochrome c oxidase subunit I (COI) gene. Probability values at the nodes represent support values for BI and maximum likelihood (ML). Only support values> 50% are shown on the nodes. For haplotype names, see table 1. *, sequences downloaded from GenBank." figureDoi="http://doi.org/10.5281/zenodo.12831354" httpUri="https://zenodo.org/record/12831354/files/figure.png" lastPageId="21" lastPageNumber="22" pageId="20" pageNumber="21">Fig. 3</figureCitation>
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).
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<taxonomicName id="869091958B4DFFCBFAE91098D7D84D38" baseAuthorityName="Liang & Yan" baseAuthorityYear="1978" box="[175,463,253,277]" class="Malacostraca" family="Atyidae" genus="Neocaridina" higherTaxonomySource="GBIF" isUncertain="true" kingdom="Animalia" order="Decapoda" pageId="21" pageNumber="22" phylum="Arthropoda" rank="species" species="fukiensis">
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<emphasis id="73E436048B4DFFCBFAE91098D7204D38" box="[175,311,253,277]" italics="true" pageId="21" pageNumber="22">Neocaridina</emphasis>
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|
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|
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@ -1,73 +1,74 @@
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<mods:namePart id="133AAC25AC91D40D13EA59140B186464">Niwa, Nobuaki</mods:namePart>
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<mods:affiliation id="405B01D23B8D46D59B023A57232409F8">Faculty of Science, Kyoto University, Kitashirakawa, Oiwake-cho, Sakyo-ku, Kyoto 606 - 8502, Japan</mods:affiliation>
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<mods:namePart id="A3B5E1C5FA7B52711228FF81C430ED3D">Niwa, Nobuaki</mods:namePart>
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<mods:affiliation id="2E53CD2FBAA6F2D5F2DABD9F0DAD8B08">Faculty of Science, Kyoto University, Kitashirakawa, Oiwake-cho, Sakyo-ku, Kyoto 606 - 8502, Japan</mods:affiliation>
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<mods:namePart id="BD982447EB514680634F01EADB43598A">Yoshigou, Hidenori</mods:namePart>
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<mods:affiliation id="86C25AE4F4B10C696C5B89787A871593">Chugai Technos Co. LTD, 9 - 12, Yokogawa-shin-machi, Nishi-ku, Hiroshima City 733 - 0013, Japan. E-mail: h. yoshigo @ chugai-tec. co. jp (Yoshigou)</mods:affiliation>
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<mods:nameIdentifier id="733A3AF683B0BC612ADD183E6E00B157" type="email">h.yoshigo@chugai-tec.co.jp</mods:nameIdentifier>
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<mods:namePart id="3A06F265E7A1650E471107AC9DE9A684">Yoshigou, Hidenori</mods:namePart>
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<mods:affiliation id="EFA45410A9ED8B952272D5D27575E1E5">Chugai Technos Co. LTD, 9 - 12, Yokogawa-shin-machi, Nishi-ku, Hiroshima City 733 - 0013, Japan. E-mail: h. yoshigo @ chugai-tec. co. jp (Yoshigou)</mods:affiliation>
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<mods:nameIdentifier id="0EE569BD87396A6657E29F410E25035B" type="email">h.yoshigo@chugai-tec.co.jp</mods:nameIdentifier>
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<mods:namePart id="71ECBFB3DC3975B5A1EE6AFC7B89B049">Nakahara, Yasuhiko</mods:namePart>
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<mods:affiliation id="A02A7A539CFF5A1D2A1C76A0598F17D8">SEIBU Environmental Research Co., LTD, Mikawachishin-machi, Sasebo-City, Nagasaki 859 - 3153, Japan. E-mail: caridina @ nifty. com (Nakahara)</mods:affiliation>
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<mods:namePart id="A193634CA527E1196437B4C00E003D7C">Nakahara, Yasuhiko</mods:namePart>
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<mods:affiliation id="4A92F0AB7AA6B194FFF3B9D582DA5EB7">SEIBU Environmental Research Co., LTD, Mikawachishin-machi, Sasebo-City, Nagasaki 859 - 3153, Japan. E-mail: caridina @ nifty. com (Nakahara)</mods:affiliation>
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<treatment id="C9395B008B5FFFD3F91A1258D7034F18" LSID="urn:lsid:plazi:treatment:C9395B008B5FFFD3F91A1258D7034F18" httpUri="http://treatment.plazi.org/id/C9395B008B5FFFD3F91A1258D7034F18" lastPageId="13" lastPageNumber="11" pageId="7" pageNumber="8">
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|
||||
|
|
@ -80,9 +81,9 @@
|
|||
</emphasis>
|
||||
</taxonomicName>
|
||||
(
|
||||
<figureCitation id="D9ABF6938B5FFFD9FE601238D2654E5B" box="[1062,1138,605,630]" captionStart="Fig" captionStartId="11.[136,167,1869,1888]" captionTargetBox="[203,1403,251,1842]" captionTargetId="figure-6@11.[133,1416,191,1857]" captionTargetPageId="11" captionText="Fig. 4. Neocaridina denticulata (De Haan, 1844). (A) cephalothorax and cephalic appendages, lateral view; (B) telson; (C) distal portion of telson; (D) preanal carina; (E) male 1st pleopod; (F) male 2nd pleopod; (G) uropodal diaeresis. Scale bars: A = 2 mm; B, D, E, F = 0.5 mm; C, G = 0.2 mm (A, D–G, male, cl 6.5 mm, B, C, male, cl 5.2 mm, ZRC 2023.0211, Kaya R., Ashida river system, Fukuyama City, Hiroshima Prefecture, N34°36'43", E133°15'33'', coll. H. Yoshigou, 17 Oct. 2015)." pageId="7" pageNumber="8">Figs. 4</figureCitation>
|
||||
<figureCitation id="D9ABF6938B5FFFD9FE601238D2654E5B" box="[1062,1138,605,630]" captionStart="Fig" captionStartId="11.[136,167,1869,1888]" captionTargetBox="[203,1403,251,1842]" captionTargetId="figure-6@11.[133,1416,191,1857]" captionTargetPageId="11" captionText="Fig. 4. Neocaridina denticulata (De Haan, 1844). (A) cephalothorax and cephalic appendages, lateral view; (B) telson; (C) distal portion of telson; (D) preanal carina; (E) male 1st pleopod; (F) male 2nd pleopod; (G) uropodal diaeresis. Scale bars: A = 2 mm; B, D, E, F = 0.5 mm; C, G = 0.2 mm (A, D–G, male, cl 6.5 mm, B, C, male, cl 5.2 mm, ZRC 2023.0211, Kaya R., Ashida river system, Fukuyama City, Hiroshima Prefecture, N34°36'43", E133°15'33'', coll. H. Yoshigou, 17 Oct. 2015)." figureDoi="http://doi.org/10.5281/zenodo.12831356" httpUri="https://zenodo.org/record/12831356/files/figure.png" pageId="7" pageNumber="8">Figs. 4</figureCitation>
|
||||
,
|
||||
<figureCitation id="D9ABF6938B5FFFD9FE3B1238D29C4E58" box="[1149,1163,605,629]" captionStart="Fig" captionStartId="12.[174,206,1898,1917]" captionTargetBox="[174,1405,250,1871]" captionTargetId="figure-6@12.[171,1454,224,1887]" captionTargetPageId="12" captionText="Fig. 5. Neocaridina denticulata (De Haan, 1844). (A) 1st pereiopod; (B) 2nd pereiopod; (C) 3rd pereiopod; (D) the same, dactylus; (E) 5th pereiopod; (F) the same, dactylus. Scale bars: A, B, C, E = 0.5 mm; D, F = 0.2 mm (male, cl 6.5 mm, ZRC 2023.0211, Kaya R., Ashida River system, Fukuyama City, Hiroshima Prefecture, N34°36'43", E133°15'33'', coll. H. Yoshigou, 17 Oct. 2015)." pageId="7" pageNumber="8">5</figureCitation>
|
||||
<figureCitation id="D9ABF6938B5FFFD9FE3B1238D29C4E58" box="[1149,1163,605,629]" captionStart="Fig" captionStartId="12.[174,206,1898,1917]" captionTargetBox="[174,1405,250,1871]" captionTargetId="figure-6@12.[171,1454,224,1887]" captionTargetPageId="12" captionText="Fig. 5. Neocaridina denticulata (De Haan, 1844). (A) 1st pereiopod; (B) 2nd pereiopod; (C) 3rd pereiopod; (D) the same, dactylus; (E) 5th pereiopod; (F) the same, dactylus. Scale bars: A, B, C, E = 0.5 mm; D, F = 0.2 mm (male, cl 6.5 mm, ZRC 2023.0211, Kaya R., Ashida River system, Fukuyama City, Hiroshima Prefecture, N34°36'43", E133°15'33'', coll. H. Yoshigou, 17 Oct. 2015)." figureDoi="http://doi.org/10.5281/zenodo.12831358" httpUri="https://zenodo.org/record/12831358/files/figure.png" pageId="7" pageNumber="8">5</figureCitation>
|
||||
)
|
||||
</heading>
|
||||
</paragraph>
|
||||
|
|
@ -292,7 +293,7 @@ cl
|
|||
.
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
<caption id="15EFBA9E8B5FFFD9FACE17E3D29E4B98" pageId="7" pageNumber="8" startId="7.[136,167,1926,1945]" targetBox="[160,1389,881,1894]" targetPageId="7" targetType="figure">
|
||||
<caption id="15EFBA9E8B5FFFD9FACE17E3D29E4B98" ID-DOI="http://doi.org/10.5281/zenodo.12831348" ID-Zenodo-Dep="12831348" httpUri="https://zenodo.org/record/12831348/files/figure.png" pageId="7" pageNumber="8" startId="7.[136,167,1926,1945]" targetBox="[160,1389,881,1894]" targetPageId="7" targetType="figure">
|
||||
<paragraph id="412FEA168B5FFFD9FACE17E3D29E4B98" blockId="7.[136,1414,1926,1974]" pageId="7" pageNumber="8">
|
||||
<emphasis id="73E436048B5FFFD9FACE17E3D6D64BB4" bold="true" box="[136,193,1926,1945]" pageId="7" pageNumber="8">Fig. 2.</emphasis>
|
||||
A neighbor-joining
|
||||
|
|
@ -889,7 +890,7 @@ aff.
|
|||
</tr>
|
||||
</table>
|
||||
</paragraph>
|
||||
<caption id="15EFBA9E8B51FFD7FACE170DD2B64B9E" pageId="9" pageNumber="10" startId="9.[136,167,1896,1915]" targetBox="[168,1376,255,1859]" targetPageId="9" targetType="figure">
|
||||
<caption id="15EFBA9E8B51FFD7FACE170DD2B64B9E" ID-DOI="http://doi.org/10.5281/zenodo.12831354" ID-Zenodo-Dep="12831354" httpUri="https://zenodo.org/record/12831354/files/figure.png" pageId="9" pageNumber="10" startId="9.[136,167,1896,1915]" targetBox="[168,1376,255,1859]" targetPageId="9" targetType="figure">
|
||||
<paragraph id="412FEA168B51FFD7FACE170DD2B64B9E" blockId="9.[136,1414,1896,1971]" pageId="9" pageNumber="10">
|
||||
<emphasis id="73E436048B51FFD7FACE170DD6D64B56" bold="true" box="[136,193,1896,1915]" pageId="9" pageNumber="10">Fig. 3.</emphasis>
|
||||
Bayesian inference (BI) tree for species of the genus
|
||||
|
|
@ -945,9 +946,9 @@ include its relatively long rostrum, which generally reaches beyond the end of t
|
|||
;
|
||||
<bibRefCitation id="250197E78B52FFD4FE2F11F8D2F84D9B" author="Liang XQ" box="[1129,1263,413,438]" pageId="10" pageNumber="11" refId="ref18975" refString="Liang XQ. 2004. Fauna Sinica. Invertebrata: Crustacea: Decapoda: Atyidae. Science Press, Beijing, 375 pp. (in Chinese)" type="book" year="2004">Liang 2004</bibRefCitation>
|
||||
). Our specimens agree well with these characters (
|
||||
<figureCitation id="D9ABF6938B52FFD4FE9D11D8D3384DFB" box="[1243,1327,445,470]" captionStart="Fig" captionStartId="11.[136,167,1869,1888]" captionTargetBox="[203,1403,251,1842]" captionTargetId="figure-6@11.[133,1416,191,1857]" captionTargetPageId="11" captionText="Fig. 4. Neocaridina denticulata (De Haan, 1844). (A) cephalothorax and cephalic appendages, lateral view; (B) telson; (C) distal portion of telson; (D) preanal carina; (E) male 1st pleopod; (F) male 2nd pleopod; (G) uropodal diaeresis. Scale bars: A = 2 mm; B, D, E, F = 0.5 mm; C, G = 0.2 mm (A, D–G, male, cl 6.5 mm, B, C, male, cl 5.2 mm, ZRC 2023.0211, Kaya R., Ashida river system, Fukuyama City, Hiroshima Prefecture, N34°36'43", E133°15'33'', coll. H. Yoshigou, 17 Oct. 2015)." pageId="10" pageNumber="11">Figs. 4</figureCitation>
|
||||
<figureCitation id="D9ABF6938B52FFD4FE9D11D8D3384DFB" box="[1243,1327,445,470]" captionStart="Fig" captionStartId="11.[136,167,1869,1888]" captionTargetBox="[203,1403,251,1842]" captionTargetId="figure-6@11.[133,1416,191,1857]" captionTargetPageId="11" captionText="Fig. 4. Neocaridina denticulata (De Haan, 1844). (A) cephalothorax and cephalic appendages, lateral view; (B) telson; (C) distal portion of telson; (D) preanal carina; (E) male 1st pleopod; (F) male 2nd pleopod; (G) uropodal diaeresis. Scale bars: A = 2 mm; B, D, E, F = 0.5 mm; C, G = 0.2 mm (A, D–G, male, cl 6.5 mm, B, C, male, cl 5.2 mm, ZRC 2023.0211, Kaya R., Ashida river system, Fukuyama City, Hiroshima Prefecture, N34°36'43", E133°15'33'', coll. H. Yoshigou, 17 Oct. 2015)." figureDoi="http://doi.org/10.5281/zenodo.12831356" httpUri="https://zenodo.org/record/12831356/files/figure.png" pageId="10" pageNumber="11">Figs. 4</figureCitation>
|
||||
,
|
||||
<figureCitation id="D9ABF6938B52FFD4FF7811D8D3594DF8" box="[1342,1358,445,469]" captionStart="Fig" captionStartId="12.[174,206,1898,1917]" captionTargetBox="[174,1405,250,1871]" captionTargetId="figure-6@12.[171,1454,224,1887]" captionTargetPageId="12" captionText="Fig. 5. Neocaridina denticulata (De Haan, 1844). (A) 1st pereiopod; (B) 2nd pereiopod; (C) 3rd pereiopod; (D) the same, dactylus; (E) 5th pereiopod; (F) the same, dactylus. Scale bars: A, B, C, E = 0.5 mm; D, F = 0.2 mm (male, cl 6.5 mm, ZRC 2023.0211, Kaya R., Ashida River system, Fukuyama City, Hiroshima Prefecture, N34°36'43", E133°15'33'', coll. H. Yoshigou, 17 Oct. 2015)." pageId="10" pageNumber="11">5</figureCitation>
|
||||
<figureCitation id="D9ABF6938B52FFD4FF7811D8D3594DF8" box="[1342,1358,445,469]" captionStart="Fig" captionStartId="12.[174,206,1898,1917]" captionTargetBox="[174,1405,250,1871]" captionTargetId="figure-6@12.[171,1454,224,1887]" captionTargetPageId="12" captionText="Fig. 5. Neocaridina denticulata (De Haan, 1844). (A) 1st pereiopod; (B) 2nd pereiopod; (C) 3rd pereiopod; (D) the same, dactylus; (E) 5th pereiopod; (F) the same, dactylus. Scale bars: A, B, C, E = 0.5 mm; D, F = 0.2 mm (male, cl 6.5 mm, ZRC 2023.0211, Kaya R., Ashida River system, Fukuyama City, Hiroshima Prefecture, N34°36'43", E133°15'33'', coll. H. Yoshigou, 17 Oct. 2015)." figureDoi="http://doi.org/10.5281/zenodo.12831358" httpUri="https://zenodo.org/record/12831358/files/figure.png" pageId="10" pageNumber="11">5</figureCitation>
|
||||
). Based on our study supported by molecular evidence, the species is confirmed to be distributed in the main islands of
|
||||
<collectingCountry id="3987AA868B52FFD4F98D127BD21A4E18" box="[971,1037,542,565]" name="Japan" pageId="10" pageNumber="11">Japan</collectingCountry>
|
||||
, as well as the
|
||||
|
|
@ -957,7 +958,7 @@ include its relatively long rostrum, which generally reaches beyond the end of t
|
|||
Provinces of
|
||||
<collectingCountry id="3987AA868B52FFD4FF771258D3664E78" box="[1329,1393,573,597]" name="China" pageId="10" pageNumber="11">China</collectingCountry>
|
||||
(
|
||||
<figureCitation id="D9ABF6938B52FFD4FFC61258D5764E5B" captionStart="Fig" captionStartId="9.[136,167,1896,1915]" captionTargetBox="[168,1376,255,1859]" captionTargetId="graphics-6@9.[168,996,269,1850]" captionTargetPageId="9" captionText="Fig. 3. Bayesian inference (BI) tree for species of the genus Neocaridina from the East Asia Arc and the related taxa from East Asia, based on the cytochrome c oxidase subunit I (COI) gene. Probability values at the nodes represent support values for BI and maximum likelihood (ML). Only support values> 50% are shown on the nodes. For haplotype names, see table 1. *, sequences downloaded from GenBank." pageId="10" pageNumber="11">Fig. 3</figureCitation>
|
||||
<figureCitation id="D9ABF6938B52FFD4FFC61258D5764E5B" captionStart="Fig" captionStartId="9.[136,167,1896,1915]" captionTargetBox="[168,1376,255,1859]" captionTargetId="graphics-6@9.[168,996,269,1850]" captionTargetPageId="9" captionText="Fig. 3. Bayesian inference (BI) tree for species of the genus Neocaridina from the East Asia Arc and the related taxa from East Asia, based on the cytochrome c oxidase subunit I (COI) gene. Probability values at the nodes represent support values for BI and maximum likelihood (ML). Only support values> 50% are shown on the nodes. For haplotype names, see table 1. *, sequences downloaded from GenBank." figureDoi="http://doi.org/10.5281/zenodo.12831354" httpUri="https://zenodo.org/record/12831354/files/figure.png" pageId="10" pageNumber="11">Fig. 3</figureCitation>
|
||||
). Due to the limited samples across
|
||||
<collectingCountry id="3987AA868B52FFD4FF421238D3514E58" box="[1284,1350,605,629]" name="China" pageId="10" pageNumber="11">China</collectingCountry>
|
||||
used for genetic comparison, we are unable to comment if these populations in
|
||||
|
|
@ -1019,7 +1020,7 @@ and
|
|||
and
|
||||
<collectingRegion id="835424F48B52FFD4FF08149BD3B3493B" box="[1358,1444,1278,1302]" country="China" name="Yunnan" pageId="10" pageNumber="11">Yunnan</collectingRegion>
|
||||
) (
|
||||
<figureCitation id="D9ABF6938B52FFD4F91D1578D588491B" box="[859,927,1309,1334]" captionStart="Fig" captionStartId="9.[136,167,1896,1915]" captionTargetBox="[168,1376,255,1859]" captionTargetId="graphics-6@9.[168,996,269,1850]" captionTargetPageId="9" captionText="Fig. 3. Bayesian inference (BI) tree for species of the genus Neocaridina from the East Asia Arc and the related taxa from East Asia, based on the cytochrome c oxidase subunit I (COI) gene. Probability values at the nodes represent support values for BI and maximum likelihood (ML). Only support values> 50% are shown on the nodes. For haplotype names, see table 1. *, sequences downloaded from GenBank." pageId="10" pageNumber="11">Fig. 3</figureCitation>
|
||||
<figureCitation id="D9ABF6938B52FFD4F91D1578D588491B" box="[859,927,1309,1334]" captionStart="Fig" captionStartId="9.[136,167,1896,1915]" captionTargetBox="[168,1376,255,1859]" captionTargetId="graphics-6@9.[168,996,269,1850]" captionTargetPageId="9" captionText="Fig. 3. Bayesian inference (BI) tree for species of the genus Neocaridina from the East Asia Arc and the related taxa from East Asia, based on the cytochrome c oxidase subunit I (COI) gene. Probability values at the nodes represent support values for BI and maximum likelihood (ML). Only support values> 50% are shown on the nodes. For haplotype names, see table 1. *, sequences downloaded from GenBank." figureDoi="http://doi.org/10.5281/zenodo.12831354" httpUri="https://zenodo.org/record/12831354/files/figure.png" pageId="10" pageNumber="11">Fig. 3</figureCitation>
|
||||
). The attribution of the name
|
||||
<taxonomicName id="869091958B52FFD4FEB7157BD39A4918" baseAuthorityName="De Haan" baseAuthorityYear="1844" box="[1265,1421,1309,1333]" class="Malacostraca" family="Atyidae" genus="Neocaridina" higherTaxonomySource="GBIF" kingdom="Animalia" order="Decapoda" pageId="10" pageNumber="11" phylum="Arthropoda" rank="species" species="denticulata">
|
||||
<emphasis id="73E436048B52FFD4FEB7157BD39A4918" box="[1265,1421,1309,1333]" italics="true" pageId="10" pageNumber="11">N. denticulata</emphasis>
|
||||
|
|
@ -1066,7 +1067,7 @@ specimens collected from
|
|||
, and
|
||||
<collectingRegion id="835424F48B52FFD4FE211618D2C84AB8" box="[1127,1247,1661,1685]" country="Japan" name="Yamaguchi" pageId="10" pageNumber="11">Yamaguchi</collectingRegion>
|
||||
(
|
||||
<figureCitation id="D9ABF6938B52FFD4FEA81618D3394ABB" box="[1262,1326,1661,1686]" captionStart="Fig" captionStartId="9.[136,167,1896,1915]" captionTargetBox="[168,1376,255,1859]" captionTargetId="graphics-6@9.[168,996,269,1850]" captionTargetPageId="9" captionText="Fig. 3. Bayesian inference (BI) tree for species of the genus Neocaridina from the East Asia Arc and the related taxa from East Asia, based on the cytochrome c oxidase subunit I (COI) gene. Probability values at the nodes represent support values for BI and maximum likelihood (ML). Only support values> 50% are shown on the nodes. For haplotype names, see table 1. *, sequences downloaded from GenBank." pageId="10" pageNumber="11">Fig. 3</figureCitation>
|
||||
<figureCitation id="D9ABF6938B52FFD4FEA81618D3394ABB" box="[1262,1326,1661,1686]" captionStart="Fig" captionStartId="9.[136,167,1896,1915]" captionTargetBox="[168,1376,255,1859]" captionTargetId="graphics-6@9.[168,996,269,1850]" captionTargetPageId="9" captionText="Fig. 3. Bayesian inference (BI) tree for species of the genus Neocaridina from the East Asia Arc and the related taxa from East Asia, based on the cytochrome c oxidase subunit I (COI) gene. Probability values at the nodes represent support values for BI and maximum likelihood (ML). Only support values> 50% are shown on the nodes. For haplotype names, see table 1. *, sequences downloaded from GenBank." figureDoi="http://doi.org/10.5281/zenodo.12831354" httpUri="https://zenodo.org/record/12831354/files/figure.png" pageId="10" pageNumber="11">Fig. 3</figureCitation>
|
||||
), as well as one of
|
||||
<bibRefCitation id="250197E78B52FFD4F9D916F8D2724A9B" author="Fuke Y & Iwasaki T & Sasazuka M & Yamamoto Y." box="[927,1125,1693,1718]" pageId="10" pageNumber="11" pagination="63 - 71" refId="ref17894" refString="Fuke Y, Iwasaki T, Sasazuka M, Yamamoto Y. 2021. First record of freshwater shrimp Neocaridina denticulata (Crustacea: Decapoda: Atyidae) from Fukue-jima Island, Goto Islands, Japan. Cancer 30: 63 - 71. (in Japanese). doi: 10.18988 / cancer. 30.0 _ 63." type="journal article" year="2021">Fuke et al. (2021)</bibRefCitation>
|
||||
’s
|
||||
|
|
@ -1140,7 +1141,7 @@ sequences of
|
|||
(
|
||||
<tableCitation id="0C12DFAD8B55FFD3F8E71278D6804E7B" captionStart="Table 2" captionStartId="5.[136,200,541,565]" captionText="Table 2. Other COI haplotypes of Neocaridina species from GenBank used in figure 3. Accession numbers with identical haplotypes are parenthesized" pageId="13" pageNumber="14">Table 2</tableCitation>
|
||||
) into our phylogenetic tree (
|
||||
<figureCitation id="D9ABF6938B55FFD3FBB01258D4574E7B" box="[502,576,573,598]" captionStart="Fig" captionStartId="9.[136,167,1896,1915]" captionTargetBox="[168,1376,255,1859]" captionTargetId="graphics-6@9.[168,996,269,1850]" captionTargetPageId="9" captionText="Fig. 3. Bayesian inference (BI) tree for species of the genus Neocaridina from the East Asia Arc and the related taxa from East Asia, based on the cytochrome c oxidase subunit I (COI) gene. Probability values at the nodes represent support values for BI and maximum likelihood (ML). Only support values> 50% are shown on the nodes. For haplotype names, see table 1. *, sequences downloaded from GenBank." pageId="13" pageNumber="14">Fig. 3</figureCitation>
|
||||
<figureCitation id="D9ABF6938B55FFD3FBB01258D4574E7B" box="[502,576,573,598]" captionStart="Fig" captionStartId="9.[136,167,1896,1915]" captionTargetBox="[168,1376,255,1859]" captionTargetId="graphics-6@9.[168,996,269,1850]" captionTargetPageId="9" captionText="Fig. 3. Bayesian inference (BI) tree for species of the genus Neocaridina from the East Asia Arc and the related taxa from East Asia, based on the cytochrome c oxidase subunit I (COI) gene. Probability values at the nodes represent support values for BI and maximum likelihood (ML). Only support values> 50% are shown on the nodes. For haplotype names, see table 1. *, sequences downloaded from GenBank." figureDoi="http://doi.org/10.5281/zenodo.12831354" httpUri="https://zenodo.org/record/12831354/files/figure.png" pageId="13" pageNumber="14">Fig. 3</figureCitation>
|
||||
), all samples clustered well within the clade of
|
||||
<taxonomicName id="869091958B55FFD3F85D123BD4914E58" baseAuthorityName="Bouvier" baseAuthorityYear="1904" box="[539,646,605,629]" class="Malacostraca" family="Atyidae" genus="Neocaridina" higherTaxonomySource="GBIF" kingdom="Animalia" order="Decapoda" pageId="13" pageNumber="14" phylum="Arthropoda" rank="species" species="davidi">
|
||||
<emphasis id="73E436048B55FFD3F85D123BD4914E58" box="[539,646,605,629]" italics="true" pageId="13" pageNumber="14">N. davidi</emphasis>
|
||||
|
|
|
|||
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Reference in a new issue