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<mods:identifier id="839754FC90A389F597CA193214FF734C" type="DOI">10.1371/journal.pone.0122254</mods:identifier>
|
||||
<mods:identifier id="A52DC014912726D006DE7F0AE9BB2434" type="ISSN">1932-6203</mods:identifier>
|
||||
<mods:identifier id="0B6E73BA892D3941F941542BDF3ED4B2" type="PMC">PMC4382152</mods:identifier>
|
||||
<mods:identifier id="F552D47031F97F69B311BCE8CC3CA39C" type="PubMed">25830331</mods:identifier>
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||||
<mods:classification id="A5CC8CC949900E8DAEE574A5AE5D99F4">journal article</mods:classification>
|
||||
<mods:identifier id="CB036568C514DCBB9EDF1608086B7643" type="DOI">10.1371/journal.pone.0122254</mods:identifier>
|
||||
<mods:identifier id="5B9BC36688E986039F3F9714F27CE96C" type="ISSN">1932-6203</mods:identifier>
|
||||
<mods:identifier id="9DE185149EA7514489714D1E9FC66C60" type="PMC">PMC4382152</mods:identifier>
|
||||
<mods:identifier id="A8892D9356D82D0AB4F333645E242C02" type="PubMed">25830331</mods:identifier>
|
||||
<mods:identifier id="79E0DA8E2B396B6A1D8D9B38013DAA43" type="Zenodo-Dep">12802690</mods:identifier>
|
||||
</mods:mods>
|
||||
<treatment id="2A4D325A0259FFC2FDF956F9C7FCFC8A" ID-DOI="http://doi.org/10.5281/zenodo.12630638" ID-Zenodo-Dep="12630638" LSID="urn:lsid:plazi:treatment:2A4D325A0259FFC2FDF956F9C7FCFC8A" httpUri="http://treatment.plazi.org/id/2A4D325A0259FFC2FDF956F9C7FCFC8A" lastPageId="9" lastPageNumber="10" pageId="4" pageNumber="5">
|
||||
<subSubSection id="EAFED0C70259FFCFFDF956F9C7F1FCFD" pageId="4" pageNumber="5" type="nomenclature">
|
||||
|
|
@ -125,7 +126,7 @@ are Gram-negative, non-motile, non-spore-forming, strictly aerobic
|
|||
<subSubSection id="EAFED0C70259FFC2FDF95705C7FCFC8A" lastPageId="9" lastPageNumber="10" pageId="4" pageNumber="5" type="description">
|
||||
<paragraph id="A25B834C0259FFCFFDF95705C7FFFC80" blockId="4.[533,1529,723,1006]" pageId="4" pageNumber="5">
|
||||
rods, approximately 0.6–1.7 μm in length and 0.3–0.6 μm in diameter (
|
||||
<figureCitation id="3ADF9FC90259FFCFFAED5705C71FFCA3" box="[1281,1332,808,832]" captionStart="Fig 1" captionStartId="4.[96,128,1852,1872]" captionTargetBox="[97,1381,1049,1831]" captionTargetId="figure-243@4.[96,1382,1048,1832]" captionTargetPageId="4" captionText="Fig 1. Electron micrograph of the cell morphology of strain ZWT. doi:10.1371/journal.pone.0122254.g001" pageId="4" pageNumber="5">Fig 1</figureCitation>
|
||||
<figureCitation id="3ADF9FC90259FFCFFAED5705C71FFCA3" box="[1281,1332,808,832]" captionStart="Fig 1" captionStartId="4.[96,128,1852,1872]" captionTargetBox="[97,1381,1049,1831]" captionTargetId="figure-243@4.[96,1382,1048,1832]" captionTargetPageId="4" captionText="Fig 1. Electron micrograph of the cell morphology of strain ZWT. doi:10.1371/journal.pone.0122254.g001" figureDoi="http://doi.org/10.5281/zenodo.12802692" httpUri="https://zenodo.org/record/12802692/files/figure.png" pageId="4" pageNumber="5">Fig 1</figureCitation>
|
||||
). After 48 h of incubation on TGY, ZW
|
||||
<superScript id="55912E040259FFCFFCEF5768C124FCB5" attach="left" box="[771,783,837,854]" fontSize="7" pageId="4" pageNumber="5">T</superScript>
|
||||
colonies were
|
||||
|
|
@ -140,7 +141,7 @@ are positive for catalase and oxidase activities, but negative for urease. Casei
|
|||
<superScript id="55912E040259FFCFFA4E57FDC785FC02" attach="left" box="[1442,1454,976,993]" fontSize="7" pageId="4" pageNumber="5">T</superScript>
|
||||
do not
|
||||
</paragraph>
|
||||
<caption id="F69BD3C40259FFCFFF8C5311C3A5F899" pageId="4" pageNumber="5" startId="4.[96,128,1852,1872]" targetBox="[97,1381,1049,1831]" targetPageId="4" targetType="figure">
|
||||
<caption id="F69BD3C40259FFCFFF8C5311C3A5F899" ID-DOI="http://doi.org/10.5281/zenodo.12802692" ID-Zenodo-Dep="12802692" httpUri="https://zenodo.org/record/12802692/files/figure.png" pageId="4" pageNumber="5" startId="4.[96,128,1852,1872]" targetBox="[97,1381,1049,1831]" targetPageId="4" targetType="figure">
|
||||
<paragraph id="A25B834C0259FFCFFF8C5311C0FCF8B3" blockId="4.[96,727,1848,1914]" box="[96,727,1848,1872]" pageId="4" pageNumber="5">
|
||||
<emphasis id="90905F5E0259FFCFFF8C5311C0FCF8B3" bold="true" box="[96,727,1848,1872]" pageId="4" pageNumber="5">
|
||||
Fig 1. Electron micrograph of the cell morphology of strain ZW
|
||||
|
|
@ -822,13 +823,13 @@ Bootstrap values (expressed as percentages of 1,000 replications) of> 70% are
|
|||
The length of the circular chromosome of strain ZW
|
||||
<superScript id="55912E04025AFFCCFBB35522C640FEC3" attach="left" box="[1119,1131,271,288]" fontSize="7" pageId="7" pageNumber="8">T</superScript>
|
||||
was found to be 4,615,818 bp (
|
||||
<figureCitation id="3ADF9FC9025AFFCCFA5F5538C7CCFECE" box="[1459,1511,277,301]" captionStart="Fig 3" captionStartId="7.[96,128,1792,1812]" captionTargetBox="[97,1305,549,1771]" captionTargetId="figure-98@7.[96,1306,549,1771]" captionTargetPageId="7" captionText="Fig 3. Optical mapping of the Sphingobacterium deserti sp. nov. ZWT genomic DNA with BamHI. The large chromosome restriction map was generated by shotgun optical mapping. The outer circle depicts the consensus map; the inner circles indicate the contigs from which the consensus map was generated. Colors are arbitrarily assigned to homologous overlapping fragments. doi:10.1371/journal.pone.0122254.g003" pageId="7" pageNumber="8">Fig 3</figureCitation>
|
||||
<figureCitation id="3ADF9FC9025AFFCCFA5F5538C7CCFECE" box="[1459,1511,277,301]" captionStart="Fig 3" captionStartId="7.[96,128,1792,1812]" captionTargetBox="[97,1305,549,1771]" captionTargetId="figure-98@7.[96,1306,549,1771]" captionTargetPageId="7" captionText="Fig 3. Optical mapping of the Sphingobacterium deserti sp. nov. ZWT genomic DNA with BamHI. The large chromosome restriction map was generated by shotgun optical mapping. The outer circle depicts the consensus map; the inner circles indicate the contigs from which the consensus map was generated. Colors are arbitrarily assigned to homologous overlapping fragments. doi:10.1371/journal.pone.0122254.g003" figureDoi="http://doi.org/10.5281/zenodo.12802696" httpUri="https://zenodo.org/record/12802696/files/figure.png" pageId="7" pageNumber="8">Fig 3</figureCitation>
|
||||
,
|
||||
</paragraph>
|
||||
<paragraph id="A25B834C025AFFCCFDF9551AC7E7FEAC" blockId="7.[533,1527,207,440]" box="[533,1484,311,336]" pageId="7" pageNumber="8">GenBank accession number JJMU00000000). The GC content of the genome is 42.6 mol%</paragraph>
|
||||
<paragraph id="A25B834C025AFFCCFDF95577C7E4FE91" blockId="7.[533,1527,207,440]" box="[533,1487,346,371]" pageId="7" pageNumber="8">
|
||||
(
|
||||
<figureCitation id="3ADF9FC9025AFFCCFDF25577C079FE91" box="[542,594,346,370]" captionStart="Fig 4" captionStartId="8.[96,128,1785,1805]" captionTargetBox="[97,1199,209,1763]" captionTargetId="figure-3@8.[96,1200,208,1764]" captionTargetPageId="8" captionText="Fig 4. Genome map of Sphingobacterium deserti sp. nov. ZWT. Concentric tracks from the inside to the outside represent the GC nucleotide bias; the GC content; tRNA and rRNA genes on the reverse strand; tRNA and rRNA genes on the forward-strand; reverse-strand coding sequences (CDSs); and forwardstrand CDSs. doi:10.1371/journal. pone.0122254.g004" pageId="7" pageNumber="8">Fig 4</figureCitation>
|
||||
<figureCitation id="3ADF9FC9025AFFCCFDF25577C079FE91" box="[542,594,346,370]" captionStart="Fig 4" captionStartId="8.[96,128,1785,1805]" captionTargetBox="[97,1199,209,1763]" captionTargetId="figure-3@8.[96,1200,208,1764]" captionTargetPageId="8" captionText="Fig 4. Genome map of Sphingobacterium deserti sp. nov. ZWT. Concentric tracks from the inside to the outside represent the GC nucleotide bias; the GC content; tRNA and rRNA genes on the reverse strand; tRNA and rRNA genes on the forward-strand; reverse-strand coding sequences (CDSs); and forwardstrand CDSs. doi:10.1371/journal. pone.0122254.g004" figureDoi="http://doi.org/10.5281/zenodo.12802700" httpUri="https://zenodo.org/record/12802700/files/figure.png" pageId="7" pageNumber="8">Fig 4</figureCitation>
|
||||
), in agreement with the value (44.9 mol%) established by DNA renaturation kinetics
|
||||
</paragraph>
|
||||
<paragraph id="A25B834C025AFFCCFDF95550C7DCFE76" blockId="7.[533,1527,207,440]" box="[533,1527,381,405]" pageId="7" pageNumber="8">
|
||||
|
|
@ -840,7 +841,7 @@ was found to be 4,615,818 bp (
|
|||
</taxonomicName>
|
||||
</paragraph>
|
||||
<paragraph id="A25B834C025AFFCCFDF955B2C69DFE54" blockId="7.[533,1527,207,440]" box="[533,1206,415,440]" pageId="7" pageNumber="8">species for which draft genome sequences are publicly available.</paragraph>
|
||||
<caption id="F69BD3C4025AFFCCFF8C532DC3A4F893" pageId="7" pageNumber="8" startId="7.[96,128,1792,1812]" targetBox="[97,1305,549,1771]" targetPageId="7" targetType="figure">
|
||||
<caption id="F69BD3C4025AFFCCFF8C532DC3A4F893" ID-DOI="http://doi.org/10.5281/zenodo.12802696" ID-Zenodo-Dep="12802696" httpUri="https://zenodo.org/record/12802696/files/figure.png" pageId="7" pageNumber="8" startId="7.[96,128,1792,1812]" targetBox="[97,1305,549,1771]" targetPageId="7" targetType="figure">
|
||||
<paragraph id="A25B834C025AFFCCFF8C532DC16DF8A4" blockId="7.[96,1531,1788,1904]" pageId="7" pageNumber="8">
|
||||
<emphasis id="90905F5E025AFFCCFF8C532DC639F8F7" bold="true" box="[96,1042,1788,1812]" pageId="7" pageNumber="8">
|
||||
Fig 3. Optical mapping of the
|
||||
|
|
@ -858,7 +859,7 @@ The large chromosome restriction map was generated by shotgun optical mapping. T
|
|||
</paragraph>
|
||||
<paragraph id="A25B834C025AFFCCFF8C5371C3A4F893" blockId="7.[96,1531,1788,1904]" box="[96,399,1884,1904]" pageId="7" pageNumber="8">doi:10.1371/journal.pone.0122254.g003</paragraph>
|
||||
</caption>
|
||||
<caption id="F69BD3C40255FFC3FF8C52D4C3A5F88A" pageId="8" pageNumber="9" startId="8.[96,128,1785,1805]" targetBox="[97,1199,209,1763]" targetPageId="8" targetType="figure">
|
||||
<caption id="F69BD3C40255FFC3FF8C52D4C3A5F88A" ID-DOI="http://doi.org/10.5281/zenodo.12802700" ID-Zenodo-Dep="12802700" httpUri="https://zenodo.org/record/12802700/files/figure.png" pageId="8" pageNumber="9" startId="8.[96,128,1785,1805]" targetBox="[97,1199,209,1763]" targetPageId="8" targetType="figure">
|
||||
<paragraph id="A25B834C0255FFC3FF8C52D4C2F5F8A3" blockId="8.[96,1534,1781,1897]" pageId="8" pageNumber="9">
|
||||
<emphasis id="90905F5E0255FFC3FF8C52D4C0E1F8EE" bold="true" box="[96,714,1781,1805]" pageId="8" pageNumber="9">
|
||||
Fig 4. Genome map of
|
||||
|
|
|
|||
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Reference in a new issue