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@ -189,7 +189,7 @@
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<emphasis id="8BFFEAF4B7130E0E8BB5E567FE0F4B10" bold="true" box="[189,429,1880,1906]" pageId="18" pageNumber="19">Material examined</emphasis>
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–
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|
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@ -224,7 +224,7 @@ leg.;
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<specimenCode id="E92D9E9DB7130E0E8BB5E5F1FE284B8A" box="[189,394,1998,2024]" collectionCode="CUDC-CRU" pageId="18" pageNumber="19">CUDC-CRU 189</specimenCode>
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</materialsCitation>
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•
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<materialsCitation id="09E33CBBB7130E0E8AA0E5F1FAD04B8A" ID-GBIF-Occurrence="3464759321" box="[424,1394,1998,2025]" collectingDate="2017-09-06" collectionCode="R" collectorName="C. M. Lopez-Orozco" country="Colombia" latitude="10.171083" location="Cartagena de Indias" longLatPrecision="1" longitude="-75.74411" municipality="Paraiso Secreto" pageId="18" pageNumber="19" specimenCount="14" specimenCount-female="10" specimenCount-male="4" stateProvince="Bolivar, Cartagena de Indias, Islas del Rosario, Isla Grande">
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<materialsCitation id="09E33CBBB7130E0F8AA0E5F1FC144D41" ID-GBIF-Occurrence="3464759321" collectingDate="2017-09-06" collectionCode="R" collectorName="C. M. Lopez-Orozco" country="Colombia" lastPageId="19" lastPageNumber="20" latitude="10.171083" location="Cartagena de Indias" longLatPrecision="1" longitude="-75.74411" municipality="Paraiso Secreto" pageId="18" pageNumber="19" specimenCode="CUDC-CRU 190" specimenCount="14" specimenCount-female="10" specimenCount-male="4" stateProvince="Bolivar, Cartagena de Indias, Islas del Rosario, Isla Grande">
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<specimenCount id="AF8DFD6FB7130E0E8AA0E5F1FE4C4B8B" box="[424,494,1998,2025]" pageId="18" pageNumber="19" type="male">4 ♂♂</specimenCount>
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,
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<specimenCount id="AF8DFD6FB7130E0E8AF5E5F1FDF04B8B" box="[509,594,1998,2025]" pageId="18" pageNumber="19" type="female">10 ♀♀</specimenCount>
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|
|
@ -234,11 +234,7 @@ leg.;
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;
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<collectorName id="147E5330B7130E0E8F88E5F1FAD04B8A" box="[1152,1394,1998,2024]" pageId="18" pageNumber="19">C.M. López-Orozco</collectorName>
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,
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</paragraph>
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<materialsCitation id="09E33CBBB7120E0F8BB5E336FC144D41" ID-GBIF-Occurrence="3464759354" box="[189,950,265,291]" collectionCode="R" collectorName="Y. M. Carpio-Diaz & R. Borja-Arrieta" pageId="19" pageNumber="20" specimenCode="CUDC-CRU 190" specimenCount="1">
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,
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<collectorName id="147E5330B7120E0F8BB5E336FE364D41" box="[189,404,265,291]" pageId="19" pageNumber="20">Y.M. Carpio-Díaz</collectorName>
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and
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<collectorName id="147E5330B7120E0F8ADEE336FD394D41" box="[470,667,265,291]" pageId="19" pageNumber="20">R. Borja-Arrieta</collectorName>
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|
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@ -1,147 +1,147 @@
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<mods:affiliation id="C2F6E74489576E534FC038AB63CD30AF">Grupo de Investigación en Química de Medicamentos, Facultad de Ciencias Farmacéuticas, Universidad de Cartagena, Campus Zaragocilla, Cartagena de Indias, Colombia.</mods:affiliation>
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<mods:namePart id="82257B4386392515EF44B97BFE579674">Hurtado, Luis A.</mods:namePart>
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<mods:affiliation id="5AC266C3BFE24ADF56DDB0A318A20D3C">Department of Ecology and Conservation Biology, Texas A & M University, College Station, Texas, USA.</mods:affiliation>
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<mods:affiliation id="F95228B170760D2DF355ACC088E7703F">Department of Ecology and Conservation Biology, Texas A & M University, College Station, Texas, USA.</mods:affiliation>
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|
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@ -164,9 +164,9 @@
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<taxonomicName id="7E8B4D65B7240E398A33E3E4FD724D97" ID-CoL="8VPBF" authority="Budde-Lund, 1904: 109" authorityName="Budde-Lund" authorityPageNumber="109" authorityYear="1904" box="[315,720,475,501]" class="Malacostraca" family="Armadillidae" genus="Ctenorillo" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" species="tuberosus">
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<emphasis id="8BFFEAF4B7240E398A33E3E4FE0E4D97" box="[315,428,475,501]" italics="true" pageId="37" pageNumber="38">tuberosus</emphasis>
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<bibRefCitation id="DD1A4B17B7240E398ABCE3E4FD724D97" author="Budde-Lund G." box="[436,720,475,501]" pageId="37" pageNumber="38" refId="ref21335" refString="Budde-Lund G. 1904. A Revision of Crustacea Isopoda Terrestria, with Additions and Illustrations. Pt 1 Eubelum, Pt 2 Spherilloninae, Pt 3 Armadillo. H. Hagerup, Copenhagen, Denmark." type="book" year="1904">Budde-Lund, 1904: 109</bibRefCitation>
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</taxonomicName>
|
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|
|
@ -201,18 +201,18 @@ Campos-Filho
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<emphasis id="8BFFEAF4B7240E398A73E0FBFB204EBC" bold="true" box="[379,1154,708,735]" pageId="37" pageNumber="38">
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,
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,
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,
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•
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,
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;
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,
|
||||
|
|
@ -236,7 +236,7 @@ leg.;
|
|||
<materialsCitation id="09E33CBBB7240E39888FE12FFABF4F33" ID-GBIF-Occurrence="3464759446" collectingDate="2017-08-25" collectionCode="R" collectorName="C. M. Lopez-Orozco & R. Borja-Arrieta & Y. M. Carpio-Diaz" country="Colombia" latitude="10.177501" location="Orika" longLatPrecision="15" longitude="-75.740776" pageId="37" pageNumber="38" specimenCode="CUDC-CRU 256" specimenCount="1" specimenCount-male="1" stateProvince="Bolivar, Cartagena de Indias, Islas del Rosario, Isla Grande">
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;
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<location id="BC54603DB7240E3988CEE12FFBAF4F48" LSID="urn:lsid:plazi:treatment:312287F0B7240E39892AE34EFB7E48E3:BC54603DB7240E3988CEE12FFBAF4F48" box="[966,1037,784,810]" country="Colombia" latitude="10.177501" longLatPrecision="15" longitude="-75.740776" name="Orika" pageId="37" pageNumber="38" stateProvince="Bolivar, Cartagena de Indias, Islas del Rosario, Isla Grande">Orika</location>
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;
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<geoCoordinate id="DCBF5021B7240E398F12E130FB134F49" box="[1050,1201,783,811]" degrees="10" direction="north" minutes="10" orientation="latitude" pageId="37" pageNumber="38" precision="15" seconds="39" value="10.177501">10°10′39″ N</geoCoordinate>
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,
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|
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@ -260,9 +260,9 @@ leg.;
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,
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<specimenCount id="AF8DFD6FB7240E398BB5E164FF5C4F14" box="[189,254,859,886]" pageId="37" pageNumber="38" type="female">5 ♀♀</specimenCount>
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;
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<location id="BC54603DB7240E398A03E163FED44F14" LSID="urn:lsid:plazi:treatment:312287F0B7240E39892AE34EFB7E48E3:BC54603DB7240E398A03E163FED44F14" box="[267,374,860,886]" country="Colombia" latitude="10.179698" longLatPrecision="1" longitude="-75.729645" name="La Punta" pageId="37" pageNumber="38" stateProvince="Bolivar, Cartagena de Indias, Islas del Rosario, Isla Grande">La Punta</location>
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,
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;
|
||||
<geoCoordinate id="DCBF5021B7240E398951E165FCB04F14" box="[601,786,858,886]" degrees="10" direction="north" minutes="10" orientation="latitude" pageId="37" pageNumber="38" precision="1" seconds="46.91" value="10.179698">10°10′46.91″ N</geoCoordinate>
|
||||
,
|
||||
|
|
@ -278,9 +278,9 @@ leg.;
|
|||
<materialsCitation id="09E33CBBB7240E39892FE1BEFC684FA0" ID-GBIF-Occurrence="3464759360" collectingDate="2017-08-24" collectionCode="R" collectorName="El Silencio" country="Colombia" latitude="10.175973" location="El Silencio" longLatPrecision="1" longitude="-75.7408" pageId="37" pageNumber="38" specimenCode="CUDC-CRU 258" specimenCount="4" specimenCount-male="4" stateProvince="Bolivar, Cartagena de Indias, Islas del Rosario, Isla Grande">
|
||||
<specimenCount id="AF8DFD6FB7240E39892FE1BEFDCE4FFE" box="[551,620,897,924]" pageId="37" pageNumber="38" type="male">4 ♂♂</specimenCount>
|
||||
;
|
||||
<location id="BC54603DB7240E398971E1BEFD5C4FF9" LSID="urn:lsid:plazi:treatment:312287F0B7240E39892AE34EFB074B8A:BC54603DB7240E398971E1BEFD5C4FF9" box="[633,766,897,923]" country="Colombia" latitude="10.175973" longLatPrecision="1" longitude="-75.7408" name="El Silencio" pageId="37" pageNumber="38" stateProvince="Bolivar, Cartagena de Indias, Islas del Rosario, Isla Grande">El Silencio</location>
|
||||
<location id="BC54603DB7240E398971E1BEFD5C4FF9" LSID="urn:lsid:plazi:treatment:312287F0B7240E39892AE34EFB7E48E3:BC54603DB7240E398971E1BEFD5C4FF9" box="[633,766,897,923]" country="Colombia" latitude="10.175973" longLatPrecision="1" longitude="-75.7408" name="El Silencio" pageId="37" pageNumber="38" stateProvince="Bolivar, Cartagena de Indias, Islas del Rosario, Isla Grande">El Silencio</location>
|
||||
,
|
||||
<location id="BC54603DB7240E398803E1BDFC594FF9" LSID="urn:lsid:plazi:treatment:312287F0B7240E39892AE34EFB074B8A:BC54603DB7240E398803E1BDFC594FF9" box="[779,1019,897,924]" country="Colombia" latitude="10.175973" longLatPrecision="1" longitude="-75.7408" name="Laguna del Silencio" pageId="37" pageNumber="38" stateProvince="Bolivar, Cartagena de Indias, Islas del Rosario, Isla Grande">Laguna del Silencio</location>
|
||||
<location id="BC54603DB7240E398803E1BDFC594FF9" LSID="urn:lsid:plazi:treatment:312287F0B7240E39892AE34EFB7E48E3:BC54603DB7240E398803E1BDFC594FF9" box="[779,1019,897,924]" country="Colombia" latitude="10.175973" longLatPrecision="1" longitude="-75.7408" name="Laguna del Silencio" pageId="37" pageNumber="38" stateProvince="Bolivar, Cartagena de Indias, Islas del Rosario, Isla Grande">Laguna del Silencio</location>
|
||||
;
|
||||
<geoCoordinate id="DCBF5021B7240E398F0FE1BFFB114FFE" box="[1031,1203,896,924]" degrees="10" direction="north" minutes="10" orientation="latitude" pageId="37" pageNumber="38" precision="1" seconds="33.5" value="10.175973">10°10′33.5″ N</geoCoordinate>
|
||||
,
|
||||
|
|
@ -340,136 +340,5 @@ Campos-Filho
|
|||
.
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
<subSubSection id="F191656DB7240E398BB5E693FB074B8A" pageId="37" pageNumber="38" type="description">
|
||||
<paragraph id="B93436E6B7240E398BB5E693FC1248AB" blockId="37.[189,944,1196,1225]" box="[189,944,1196,1225]" pageId="37" pageNumber="38">
|
||||
<emphasis id="8BFFEAF4B7240E398BB5E693FC1248AB" bold="true" box="[189,944,1196,1225]" italics="true" pageId="37" pageNumber="38">
|
||||
Molecular phylogenetic analyses of
|
||||
<taxonomicName id="7E8B4D65B7240E398995E693FC1248AB" authority="Audouin, 1826" authorityName="Audouin" authorityYear="1826" box="[669,944,1196,1225]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="genus">Tylos Audouin, 1826</taxonomicName>
|
||||
</emphasis>
|
||||
</paragraph>
|
||||
<paragraph id="B93436E6B7240E398BB5E6DBFC684A15" blockId="37.[188,1400,1251,1655]" pageId="37" pageNumber="38">
|
||||
Sequences obtained for the three species of
|
||||
<taxonomicName id="7E8B4D65B7240E3989D2E6DCFCBA489F" authorityName="Audouin" authorityYear="1826" box="[730,792,1251,1277]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="genus">
|
||||
<emphasis id="8BFFEAF4B7240E3989D2E6DCFCBA489F" box="[730,792,1251,1277]" italics="true" pageId="37" pageNumber="38">Tylos</emphasis>
|
||||
</taxonomicName>
|
||||
from
|
||||
<collectingCountry id="C19C7676B7240E398860E6DCFC30489F" box="[872,914,1251,1277]" name="Iceland" pageId="37" pageNumber="38">Isla</collectingCountry>
|
||||
Grande and the specimen from Florida have been deposited under GenBank Accession Numbers
|
||||
<accessionNumber id="A6D8AB05B7240E39887BE736FBA24946" box="[883,1024,1289,1316]" httpUri="https://www.ncbi.nlm.nih.gov/nuccore/MW532964" pageId="37" pageNumber="38" type="GenBank">MW532964</accessionNumber>
|
||||
–
|
||||
<accessionNumber id="A6D8AB05B7240E398F07E736FB3F4946" box="[1039,1181,1289,1316]" httpUri="https://www.ncbi.nlm.nih.gov/nuccore/MW532970" pageId="37" pageNumber="38" type="GenBank">MW532970</accessionNumber>
|
||||
and
|
||||
<accessionNumber id="A6D8AB05B7240E398FD2E736FACA4946" box="[1242,1384,1289,1316]" httpUri="https://www.ncbi.nlm.nih.gov/nuccore/MW533069" pageId="37" pageNumber="38" type="GenBank">MW533069</accessionNumber>
|
||||
–
|
||||
<accessionNumber id="A6D8AB05B7240E398BB5E710FEED4928" box="[189,335,1327,1354]" httpUri="https://www.ncbi.nlm.nih.gov/nuccore/MW533075" pageId="37" pageNumber="38" type="GenBank">MW533075</accessionNumber>
|
||||
. Only the 12S rDNA sequence was obtained for the specimen from
|
||||
<collectingCountry id="C19C7676B7240E398F6DE710FB2D492B" box="[1125,1167,1327,1353]" name="Iceland" pageId="37" pageNumber="38">Isla</collectingCountry>
|
||||
Grande assigned to
|
||||
<taxonomicName id="7E8B4D65B7240E398BB5E76AFEEE490C" authorityName="Giordani Soika" authorityYear="1954" box="[189,332,1365,1390]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" species="marcuzzii">
|
||||
<emphasis id="8BFFEAF4B7240E398BB5E76AFEEE490C" box="[189,332,1365,1390]" italics="true" pageId="37" pageNumber="38">T. marcuzzii</emphasis>
|
||||
</taxonomicName>
|
||||
. Phylogenetic analyses using only 12S rDNA group this sequence with the
|
||||
<specimenCount id="AF8DFD6FB7240E398FC1E76AFAD4490D" box="[1225,1398,1365,1391]" pageId="37" pageNumber="38" type="generic">two specimens</specimenCount>
|
||||
of
|
||||
<taxonomicName id="7E8B4D65B7240E398BD7E744FED349F6" authorityName="Giordani Soika" authorityYear="1954" box="[223,369,1403,1428]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" species="marcuzzii">
|
||||
<emphasis id="8BFFEAF4B7240E398BD7E744FED349F6" box="[223,369,1403,1428]" italics="true" pageId="37" pageNumber="38">T. marcuzzii</emphasis>
|
||||
</taxonomicName>
|
||||
from
|
||||
<collectingCountry id="C19C7676B7240E398AB7E745FE5F49F6" box="[447,509,1402,1428]" name="Cuba" pageId="37" pageNumber="38">Cuba</collectingCountry>
|
||||
reported in
|
||||
<bibRefCitation id="DD1A4B17B7240E39899CE745FC3A49F6" author="Hurtado L. A. & Lee E. J. & Mateos M. & Taiti S." box="[660,920,1402,1428]" pageId="37" pageNumber="38" pagination="94081" refId="ref22475" refString="Hurtado L. A., Lee E. J., Mateos M. & Taiti S. 2014. Global diversification at the harsh sea-land interface: mitochondrial phylogeny of the supralittoral isopod genus Tylos (Tylidae, Oniscidea). PloS ONE 9 (4): e 94081. https: // doi. org / 10.1371 / journal. pone. 0094081" type="journal article" year="2014">
|
||||
Hurtado
|
||||
<emphasis id="8BFFEAF4B7240E3989F6E744FC9E49F6" box="[766,828,1402,1428]" italics="true" pageId="37" pageNumber="38">et al.</emphasis>
|
||||
(2014)
|
||||
</bibRefCitation>
|
||||
; see
|
||||
<figureCitation id="21B02A63B7240E3988DEE745FB8D49F6" box="[982,1071,1402,1428]" captionStart="Fig" captionStartId="38.[189,232,1719,1745]" captionTargetBox="[199,1386,815,1675]" captionTargetId="figure-147@38.[189,1398,810,1692]" captionTargetPageId="38" captionText="Fig. 18. Phylogenetic relationships among lineages of Tylos Audouin, 1826 from Isla Grande and their closest relatives. Majority rule consensus tree of the Bayesian posterior distribution (GTR+G+I model; 2 runs; 4 million generations; sampled every 1000; 10% burn-in), based on the dataset combining the 12S rDNA and 16S rDNA genes (Supplementary file 3). Nodes with less than 70% support (posterior probability, bootstrap, and SH-aLRT) for any dataset have been collapsed. Dashed lines represent relationships redrawn based on single gene analyses (Supplementary file 1 and Supplementary file 2). The split between the outgroup (T. marcuzzii) and the ingroup received 100% support in all analyses. Specimens from Isla Grande, Colombia are marked with a star. GenBank accession numbers for newly generated sequences are provided in parentheses." figureDoi="http://doi.org/10.5281/zenodo.6037954" httpUri="https://zenodo.org/record/6037954/files/figure.png" pageId="37" pageNumber="38">Fig. 18</figureCitation>
|
||||
. The 12S rDNA p-distance between
|
||||
<taxonomicName id="7E8B4D65B7240E398A2FE79EFE1549D8" authorityName="Giordani Soika" authorityYear="1954" box="[295,439,1441,1466]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" species="marcuzzii">
|
||||
<emphasis id="8BFFEAF4B7240E398A2FE79EFE1549D8" box="[295,439,1441,1466]" italics="true" pageId="37" pageNumber="38">T. marcuzzii</emphasis>
|
||||
</taxonomicName>
|
||||
from
|
||||
<collectingCountry id="C19C7676B7240E398909E79FFD8949D8" box="[513,555,1440,1466]" name="Iceland" pageId="37" pageNumber="38">Isla</collectingCountry>
|
||||
Grande and
|
||||
<taxonomicName id="7E8B4D65B7240E3989CEE79EFCF549D8" authorityName="Giordani Soika" authorityYear="1954" box="[710,855,1441,1466]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" species="marcuzzii">
|
||||
<emphasis id="8BFFEAF4B7240E3989CEE79EFCF549D8" box="[710,855,1441,1466]" italics="true" pageId="37" pageNumber="38">T. marcuzzii</emphasis>
|
||||
</taxonomicName>
|
||||
from
|
||||
<collectingCountry id="C19C7676B7240E3988A8E79FFC7C49D8" box="[928,990,1440,1466]" name="Cuba" pageId="37" pageNumber="38">Cuba</collectingCountry>
|
||||
is 2.0–2.7%, whereas the distance between the specimens from the two Cuban localities is 2.0% (
|
||||
<tableCitation id="F409035DB7240E3988AEE7F9FBA34982" box="[934,1025,1478,1504]" captionStart="Table 2" captionStartId="38.[189,259,265,291]" captionTargetPageId="38" captionText="Table 2. Genetic p-distance for 16S rDNA (above the diagonal) and 12S rDNA (below the diagonal) between the main genetic lineages of Tylos Audouin, 1826 in the Caribbean and Atlantic." httpUri="http://table.plazi.org/id/EDF4666EB7270E3A8BB5E336FB734D24" pageId="37" pageNumber="38" tableUuid="EDF4666EB7270E3A8BB5E336FB734D24">Table 2</tableCitation>
|
||||
). Only the 16S rDNA sequence was obtained for the specimen of
|
||||
<taxonomicName id="7E8B4D65B7240E398955E7D3FD6B4A67" authorityName="Budde-Lund" authorityYear="1885" box="[605,713,1516,1541]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" species="niveus">
|
||||
<emphasis id="8BFFEAF4B7240E398955E7D3FD6B4A67" box="[605,713,1516,1541]" italics="true" pageId="37" pageNumber="38">T. niveus</emphasis>
|
||||
</taxonomicName>
|
||||
from the Florida Keys, the
|
||||
<typeStatus id="66308844B7240E398F2AE7D3FBF74A64" box="[1058,1109,1516,1542]" pageId="37" pageNumber="38">type</typeStatus>
|
||||
locality of this species. Phylogenetic analyses of 16S rDNA show that specimens identified as
|
||||
<taxonomicName id="7E8B4D65B7240E398F03E42DFBD44A49" authorityName="Budde-Lund" authorityYear="1885" box="[1035,1142,1554,1579]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" species="niveus">
|
||||
<emphasis id="8BFFEAF4B7240E398F03E42DFBD44A49" box="[1035,1142,1554,1579]" italics="true" pageId="37" pageNumber="38">T. niveus</emphasis>
|
||||
</taxonomicName>
|
||||
from
|
||||
<collectingCountry id="C19C7676B7240E398FC8E42EFB484A49" box="[1216,1258,1553,1579]" name="Iceland" pageId="37" pageNumber="38">Isla</collectingCountry>
|
||||
Grande are most closely related to the
|
||||
<taxonomicName id="7E8B4D65B7240E398AF8E407FDFA4A33" authorityName="Budde-Lund" authorityYear="1885" box="[496,600,1592,1617]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" species="niveus">
|
||||
<emphasis id="8BFFEAF4B7240E398AF8E407FDFA4A33" box="[496,600,1592,1617]" italics="true" pageId="37" pageNumber="38">T. niveus</emphasis>
|
||||
</taxonomicName>
|
||||
specimen from the Florida Keys. The 16S rDNA p-distance between
|
||||
<taxonomicName id="7E8B4D65B7240E398BB4E462FE874A14" authorityName="Budde-Lund" authorityYear="1885" box="[188,293,1629,1654]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" species="niveus">
|
||||
<emphasis id="8BFFEAF4B7240E398BB4E462FE874A14" box="[188,293,1629,1654]" italics="true" pageId="37" pageNumber="38">T. niveus</emphasis>
|
||||
</taxonomicName>
|
||||
from
|
||||
<collectingCountry id="C19C7676B7240E398A66E462FE3A4A15" box="[366,408,1629,1655]" name="Iceland" pageId="37" pageNumber="38">Isla</collectingCountry>
|
||||
Grande and the Florida Keys is 2.7% (
|
||||
<tableCitation id="F409035DB7240E398869E462FC1E4A15" box="[865,956,1629,1655]" captionStart="Table 2" captionStartId="38.[189,259,265,291]" captionTargetPageId="38" captionText="Table 2. Genetic p-distance for 16S rDNA (above the diagonal) and 12S rDNA (below the diagonal) between the main genetic lineages of Tylos Audouin, 1826 in the Caribbean and Atlantic." httpUri="http://table.plazi.org/id/EDF4666EB7270E3A8BB5E336FB734D24" pageId="37" pageNumber="38" tableUuid="EDF4666EB7270E3A8BB5E336FB734D24">Table 2</tableCitation>
|
||||
).
|
||||
</paragraph>
|
||||
<paragraph id="B93436E6B7240E398BB5E49FFB074B8A" blockId="37.[188,1399,1696,2025]" pageId="37" pageNumber="38">
|
||||
The concatenated (12S rDNA and 16S rDNA) dataset was comprised of 43 taxa and 740 characters (excluding characters with ambiguous homology), 236 of which were parsimony-informative. The specimens assigned to
|
||||
<taxonomicName id="7E8B4D65B7240E398AC7E4D2FDC24B64" authorityName="Giordani Soika" authorityYear="1954" box="[463,608,1773,1798]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" species="marcuzzii">
|
||||
<emphasis id="8BFFEAF4B7240E398AC7E4D2FDC24B64" box="[463,608,1773,1798]" italics="true" pageId="37" pageNumber="38">T. marcuzzii</emphasis>
|
||||
</taxonomicName>
|
||||
were used as outgroup. Five main lineages were identified for the ingroup taxa in the concatenated phylogenetic analyses, which formed a basal polytomy (
|
||||
<figureCitation id="21B02A63B7240E398E04E52DFACA4B4E" box="[1292,1384,1810,1836]" captionStart="Fig" captionStartId="38.[189,232,1719,1745]" captionTargetBox="[199,1386,815,1675]" captionTargetId="figure-147@38.[189,1398,810,1692]" captionTargetPageId="38" captionText="Fig. 18. Phylogenetic relationships among lineages of Tylos Audouin, 1826 from Isla Grande and their closest relatives. Majority rule consensus tree of the Bayesian posterior distribution (GTR+G+I model; 2 runs; 4 million generations; sampled every 1000; 10% burn-in), based on the dataset combining the 12S rDNA and 16S rDNA genes (Supplementary file 3). Nodes with less than 70% support (posterior probability, bootstrap, and SH-aLRT) for any dataset have been collapsed. Dashed lines represent relationships redrawn based on single gene analyses (Supplementary file 1 and Supplementary file 2). The split between the outgroup (T. marcuzzii) and the ingroup received 100% support in all analyses. Specimens from Isla Grande, Colombia are marked with a star. GenBank accession numbers for newly generated sequences are provided in parentheses." figureDoi="http://doi.org/10.5281/zenodo.6037954" httpUri="https://zenodo.org/record/6037954/files/figure.png" pageId="37" pageNumber="38">Fig. 18</figureCitation>
|
||||
): (1)
|
||||
<taxonomicName id="7E8B4D65B7240E398BE1E507FEF74B33" authorityName="Budde-Lund" authorityYear="1885" box="[233,341,1848,1873]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" species="niveus">
|
||||
<emphasis id="8BFFEAF4B7240E398BE1E507FEF74B33" box="[233,341,1848,1873]" italics="true" pageId="37" pageNumber="38">T. niveus</emphasis>
|
||||
</taxonomicName>
|
||||
from
|
||||
<collectingCountry id="C19C7676B7240E398AAAE507FD964B33" box="[418,564,1847,1874]" name="Puerto Rico" pageId="37" pageNumber="38">Puerto Rico</collectingCountry>
|
||||
; (2)
|
||||
<taxonomicName id="7E8B4D65B7240E398967E508FD7A4B30" box="[623,728,1847,1874]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" species="undetermined">
|
||||
<emphasis id="8BFFEAF4B7240E398967E508FD0F4B33" box="[623,685,1847,1873]" italics="true" pageId="37" pageNumber="38">Tylos</emphasis>
|
||||
sp.
|
||||
</taxonomicName>
|
||||
from Yaguanabo,
|
||||
<collectingCountry id="C19C7676B7240E3988B0E508FC584B33" box="[952,1018,1847,1873]" name="Cuba" pageId="37" pageNumber="38">Cuba</collectingCountry>
|
||||
; (3)
|
||||
<taxonomicName id="7E8B4D65B7240E398F3CE507FB024B33" authorityName="Budde-Lund" authorityYear="1885" box="[1076,1184,1848,1873]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" species="niveus">
|
||||
<emphasis id="8BFFEAF4B7240E398F3CE507FB024B33" box="[1076,1184,1848,1873]" italics="true" pageId="37" pageNumber="38">T. niveus</emphasis>
|
||||
</taxonomicName>
|
||||
from Florida and
|
||||
<collectingCountry id="C19C7676B7240E398BB5E562FF454B15" box="[189,231,1885,1911]" name="Iceland" pageId="37" pageNumber="38">Isla</collectingCountry>
|
||||
Grande; (4)
|
||||
<taxonomicName id="7E8B4D65B7240E398A8FE561FE514B15" authority="López-Orozco & Carpio-Díaz & Borja-Arrieta & Navas-S & Campos-Filho & Taiti & Mateos & Olazaran & Caballero & Jotty & Gómez-Estrada & Hurtado, 2022" authorityName="López-Orozco & Carpio-Díaz & Borja-Arrieta & Navas-S & Campos-Filho & Taiti & Mateos & Olazaran & Caballero & Jotty & Gómez-Estrada & Hurtado" authorityYear="2022" box="[391,499,1886,1911]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" species="negroi" status="sp. nov.">
|
||||
<emphasis id="8BFFEAF4B7240E398A8FE561FE514B15" box="[391,499,1886,1911]" italics="true" pageId="37" pageNumber="38">T. negroi</emphasis>
|
||||
</taxonomicName>
|
||||
<taxonomicNameLabel id="90CC578FB7240E398AF5E561FDFF4B1A" box="[509,605,1886,1912]" pageId="37" pageNumber="38" rank="species">sp. nov.</taxonomicNameLabel>
|
||||
; and (5)
|
||||
<taxonomicName id="7E8B4D65B7240E3989C3E562FC244B15" authorityName="Holmes & Gay" authorityYear="1909" box="[715,902,1885,1911]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" sensu="lato" species="punctatus">
|
||||
<emphasis id="8BFFEAF4B7240E3989C3E562FC244B15" box="[715,902,1885,1911]" italics="true" pageId="37" pageNumber="38">Tylos punctatus</emphasis>
|
||||
</taxonomicName>
|
||||
<taxonomicNameLabel id="90CC578FB7240E398886E561FBA64B15" box="[910,1028,1885,1912]" pageId="37" pageNumber="38" sensu="lato">sensu lato</taxonomicNameLabel>
|
||||
from the Northeastern Pacific. The range of 16S rDNA and 12S rDNA p-distances between the four basal lineages excluding
|
||||
<taxonomicName id="7E8B4D65B7240E398FEEE5BBFAD14BFF" authorityName="Holmes & Gay" authorityYear="1909" box="[1254,1395,1924,1949]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" species="punctatus">
|
||||
<emphasis id="8BFFEAF4B7240E398FEEE5BBFAD14BFF" box="[1254,1395,1924,1949]" italics="true" pageId="37" pageNumber="38">T. punctatus</emphasis>
|
||||
</taxonomicName>
|
||||
is 11.1–13.6% and 9.7–15.5%, respectively. The range of 16S rDNA and 12S rDNA p-distances between these ingroup lineages and
|
||||
<taxonomicName id="7E8B4D65B7240E398AF4E5F0FD2E4B8A" authorityName="Giordani Soika" authorityYear="1954" box="[508,652,1999,2024]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" species="marcuzzii">
|
||||
<emphasis id="8BFFEAF4B7240E398AF4E5F0FD2E4B8A" box="[508,652,1999,2024]" italics="true" pageId="37" pageNumber="38">T. marcuzzii</emphasis>
|
||||
</taxonomicName>
|
||||
is 19.4–22.2% and 19.5–23.8%, respectively.
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
</treatment>
|
||||
</document>
|
||||
279
data/31/22/87/312287F0B7240E398BB5E693FB074B8A.xml
Normal file
279
data/31/22/87/312287F0B7240E398BB5E693FB074B8A.xml
Normal file
|
|
@ -0,0 +1,279 @@
|
|||
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<mods:namePart id="38770EA2B0276F0D398642E53B8951E3">Jotty, Karick</mods:namePart>
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<mods:namePart id="AF6054C9FB8EDDF55DBFA44E4E5A4859">Gómez-Estrada, Harold</mods:namePart>
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<mods:identifier id="CDD2751AE713A1E3C73D34FF8B2CA0FC" type="ZooBank">E9F1E40A-E78B-48C4-A077-124D01696B5E</mods:identifier>
|
||||
</mods:mods>
|
||||
<treatment id="312287F0B7240E398BB5E693FB074B8A" ID-DOI="http://doi.org/10.5281/zenodo.6309087" ID-GBIF-Taxon="193333179" ID-Zenodo-Dep="6309087" LSID="urn:lsid:plazi:treatment:312287F0B7240E398BB5E693FB074B8A" httpUri="http://treatment.plazi.org/id/312287F0B7240E398BB5E693FB074B8A" lastPageNumber="38" pageId="37" pageNumber="38" scope_family="Armadillidae" scope_order="Isopoda" scope_subOrder="Oniscidea">
|
||||
<subSubSection id="F191656DB7240E398BB5E693FC1248AB" box="[189,944,1196,1225]" pageId="37" pageNumber="38" type="nomenclature">
|
||||
<paragraph id="B93436E6B7240E398BB5E693FC1248AB" blockId="37.[189,944,1196,1225]" box="[189,944,1196,1225]" pageId="37" pageNumber="38">
|
||||
<emphasis id="8BFFEAF4B7240E398BB5E693FC1248AB" bold="true" box="[189,944,1196,1225]" italics="true" pageId="37" pageNumber="38">
|
||||
Molecular phylogenetic analyses of
|
||||
<taxonomicName id="7E8B4D65B7240E398995E693FC1248AB" ID-CoL="7Q5LR" authority="Audouin, 1826" authorityName="Audouin" authorityYear="1826" box="[669,944,1196,1225]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="genus">Tylos Audouin, 1826</taxonomicName>
|
||||
</emphasis>
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
<subSubSection id="F191656DB7240E398BB5E6DBFB074B8A" pageId="37" pageNumber="38" type="description">
|
||||
<paragraph id="B93436E6B7240E398BB5E6DBFC684A15" blockId="37.[188,1400,1251,1655]" pageId="37" pageNumber="38">
|
||||
Sequences obtained for the three species of
|
||||
<taxonomicName id="7E8B4D65B7240E3989D2E6DCFCBA489F" authorityName="Audouin" authorityYear="1826" box="[730,792,1251,1277]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="genus">
|
||||
<emphasis id="8BFFEAF4B7240E3989D2E6DCFCBA489F" box="[730,792,1251,1277]" italics="true" pageId="37" pageNumber="38">Tylos</emphasis>
|
||||
</taxonomicName>
|
||||
from
|
||||
<collectingCountry id="C19C7676B7240E398860E6DCFC30489F" box="[872,914,1251,1277]" name="Iceland" pageId="37" pageNumber="38">Isla</collectingCountry>
|
||||
Grande and the specimen from Florida have been deposited under GenBank Accession Numbers
|
||||
<accessionNumber id="A6D8AB05B7240E39887BE736FBA24946" box="[883,1024,1289,1316]" httpUri="https://www.ncbi.nlm.nih.gov/nuccore/MW532964" pageId="37" pageNumber="38" type="GenBank">MW532964</accessionNumber>
|
||||
–
|
||||
<accessionNumber id="A6D8AB05B7240E398F07E736FB3F4946" box="[1039,1181,1289,1316]" httpUri="https://www.ncbi.nlm.nih.gov/nuccore/MW532970" pageId="37" pageNumber="38" type="GenBank">MW532970</accessionNumber>
|
||||
and
|
||||
<accessionNumber id="A6D8AB05B7240E398FD2E736FACA4946" box="[1242,1384,1289,1316]" httpUri="https://www.ncbi.nlm.nih.gov/nuccore/MW533069" pageId="37" pageNumber="38" type="GenBank">MW533069</accessionNumber>
|
||||
–
|
||||
<accessionNumber id="A6D8AB05B7240E398BB5E710FEED4928" box="[189,335,1327,1354]" httpUri="https://www.ncbi.nlm.nih.gov/nuccore/MW533075" pageId="37" pageNumber="38" type="GenBank">MW533075</accessionNumber>
|
||||
. Only the 12S rDNA sequence was obtained for the specimen from
|
||||
<collectingCountry id="C19C7676B7240E398F6DE710FB2D492B" box="[1125,1167,1327,1353]" name="Iceland" pageId="37" pageNumber="38">Isla</collectingCountry>
|
||||
Grande assigned to
|
||||
<taxonomicName id="7E8B4D65B7240E398BB5E76AFEEE490C" authorityName="Giordani Soika" authorityYear="1954" box="[189,332,1365,1390]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" species="marcuzzii">
|
||||
<emphasis id="8BFFEAF4B7240E398BB5E76AFEEE490C" box="[189,332,1365,1390]" italics="true" pageId="37" pageNumber="38">T. marcuzzii</emphasis>
|
||||
</taxonomicName>
|
||||
. Phylogenetic analyses using only 12S rDNA group this sequence with the
|
||||
<specimenCount id="AF8DFD6FB7240E398FC1E76AFAD4490D" box="[1225,1398,1365,1391]" pageId="37" pageNumber="38" type="generic">two specimens</specimenCount>
|
||||
of
|
||||
<taxonomicName id="7E8B4D65B7240E398BD7E744FED349F6" authorityName="Giordani Soika" authorityYear="1954" box="[223,369,1403,1428]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" species="marcuzzii">
|
||||
<emphasis id="8BFFEAF4B7240E398BD7E744FED349F6" box="[223,369,1403,1428]" italics="true" pageId="37" pageNumber="38">T. marcuzzii</emphasis>
|
||||
</taxonomicName>
|
||||
from
|
||||
<collectingCountry id="C19C7676B7240E398AB7E745FE5F49F6" box="[447,509,1402,1428]" name="Cuba" pageId="37" pageNumber="38">Cuba</collectingCountry>
|
||||
reported in
|
||||
<bibRefCitation id="DD1A4B17B7240E39899CE745FC3A49F6" author="Hurtado L. A. & Lee E. J. & Mateos M. & Taiti S." box="[660,920,1402,1428]" pageId="37" pageNumber="38" pagination="94081" refId="ref22475" refString="Hurtado L. A., Lee E. J., Mateos M. & Taiti S. 2014. Global diversification at the harsh sea-land interface: mitochondrial phylogeny of the supralittoral isopod genus Tylos (Tylidae, Oniscidea). PloS ONE 9 (4): e 94081. https: // doi. org / 10.1371 / journal. pone. 0094081" type="journal article" year="2014">
|
||||
Hurtado
|
||||
<emphasis id="8BFFEAF4B7240E3989F6E744FC9E49F6" box="[766,828,1402,1428]" italics="true" pageId="37" pageNumber="38">et al.</emphasis>
|
||||
(2014)
|
||||
</bibRefCitation>
|
||||
; see
|
||||
<figureCitation id="21B02A63B7240E3988DEE745FB8D49F6" box="[982,1071,1402,1428]" captionStart="Fig" captionStartId="38.[189,232,1719,1745]" captionTargetBox="[199,1386,815,1675]" captionTargetId="figure-147@38.[189,1398,810,1692]" captionTargetPageId="38" captionText="Fig. 18. Phylogenetic relationships among lineages of Tylos Audouin, 1826 from Isla Grande and their closest relatives. Majority rule consensus tree of the Bayesian posterior distribution (GTR+G+I model; 2 runs; 4 million generations; sampled every 1000; 10% burn-in), based on the dataset combining the 12S rDNA and 16S rDNA genes (Supplementary file 3). Nodes with less than 70% support (posterior probability, bootstrap, and SH-aLRT) for any dataset have been collapsed. Dashed lines represent relationships redrawn based on single gene analyses (Supplementary file 1 and Supplementary file 2). The split between the outgroup (T. marcuzzii) and the ingroup received 100% support in all analyses. Specimens from Isla Grande, Colombia are marked with a star. GenBank accession numbers for newly generated sequences are provided in parentheses." figureDoi="http://doi.org/10.5281/zenodo.6037954" httpUri="https://zenodo.org/record/6037954/files/figure.png" pageId="37" pageNumber="38">Fig. 18</figureCitation>
|
||||
. The 12S rDNA p-distance between
|
||||
<taxonomicName id="7E8B4D65B7240E398A2FE79EFE1549D8" authorityName="Giordani Soika" authorityYear="1954" box="[295,439,1441,1466]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" species="marcuzzii">
|
||||
<emphasis id="8BFFEAF4B7240E398A2FE79EFE1549D8" box="[295,439,1441,1466]" italics="true" pageId="37" pageNumber="38">T. marcuzzii</emphasis>
|
||||
</taxonomicName>
|
||||
from
|
||||
<collectingCountry id="C19C7676B7240E398909E79FFD8949D8" box="[513,555,1440,1466]" name="Iceland" pageId="37" pageNumber="38">Isla</collectingCountry>
|
||||
Grande and
|
||||
<taxonomicName id="7E8B4D65B7240E3989CEE79EFCF549D8" authorityName="Giordani Soika" authorityYear="1954" box="[710,855,1441,1466]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" species="marcuzzii">
|
||||
<emphasis id="8BFFEAF4B7240E3989CEE79EFCF549D8" box="[710,855,1441,1466]" italics="true" pageId="37" pageNumber="38">T. marcuzzii</emphasis>
|
||||
</taxonomicName>
|
||||
from
|
||||
<collectingCountry id="C19C7676B7240E3988A8E79FFC7C49D8" box="[928,990,1440,1466]" name="Cuba" pageId="37" pageNumber="38">Cuba</collectingCountry>
|
||||
is 2.0–2.7%, whereas the distance between the specimens from the two Cuban localities is 2.0% (
|
||||
<tableCitation id="F409035DB7240E3988AEE7F9FBA34982" box="[934,1025,1478,1504]" captionStart="Table 2" captionStartId="38.[189,259,265,291]" captionTargetPageId="38" captionText="Table 2. Genetic p-distance for 16S rDNA (above the diagonal) and 12S rDNA (below the diagonal) between the main genetic lineages of Tylos Audouin, 1826 in the Caribbean and Atlantic." httpUri="http://table.plazi.org/id/EDF4666EB7270E3A8BB5E336FB734D24" pageId="37" pageNumber="38" tableUuid="EDF4666EB7270E3A8BB5E336FB734D24">Table 2</tableCitation>
|
||||
). Only the 16S rDNA sequence was obtained for the specimen of
|
||||
<taxonomicName id="7E8B4D65B7240E398955E7D3FD6B4A67" authorityName="Budde-Lund" authorityYear="1885" box="[605,713,1516,1541]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" species="niveus">
|
||||
<emphasis id="8BFFEAF4B7240E398955E7D3FD6B4A67" box="[605,713,1516,1541]" italics="true" pageId="37" pageNumber="38">T. niveus</emphasis>
|
||||
</taxonomicName>
|
||||
from the Florida Keys, the
|
||||
<typeStatus id="66308844B7240E398F2AE7D3FBF74A64" box="[1058,1109,1516,1542]" pageId="37" pageNumber="38">type</typeStatus>
|
||||
locality of this species. Phylogenetic analyses of 16S rDNA show that specimens identified as
|
||||
<taxonomicName id="7E8B4D65B7240E398F03E42DFBD44A49" authorityName="Budde-Lund" authorityYear="1885" box="[1035,1142,1554,1579]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" species="niveus">
|
||||
<emphasis id="8BFFEAF4B7240E398F03E42DFBD44A49" box="[1035,1142,1554,1579]" italics="true" pageId="37" pageNumber="38">T. niveus</emphasis>
|
||||
</taxonomicName>
|
||||
from
|
||||
<collectingCountry id="C19C7676B7240E398FC8E42EFB484A49" box="[1216,1258,1553,1579]" name="Iceland" pageId="37" pageNumber="38">Isla</collectingCountry>
|
||||
Grande are most closely related to the
|
||||
<taxonomicName id="7E8B4D65B7240E398AF8E407FDFA4A33" authorityName="Budde-Lund" authorityYear="1885" box="[496,600,1592,1617]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" species="niveus">
|
||||
<emphasis id="8BFFEAF4B7240E398AF8E407FDFA4A33" box="[496,600,1592,1617]" italics="true" pageId="37" pageNumber="38">T. niveus</emphasis>
|
||||
</taxonomicName>
|
||||
specimen from the Florida Keys. The 16S rDNA p-distance between
|
||||
<taxonomicName id="7E8B4D65B7240E398BB4E462FE874A14" authorityName="Budde-Lund" authorityYear="1885" box="[188,293,1629,1654]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" species="niveus">
|
||||
<emphasis id="8BFFEAF4B7240E398BB4E462FE874A14" box="[188,293,1629,1654]" italics="true" pageId="37" pageNumber="38">T. niveus</emphasis>
|
||||
</taxonomicName>
|
||||
from
|
||||
<collectingCountry id="C19C7676B7240E398A66E462FE3A4A15" box="[366,408,1629,1655]" name="Iceland" pageId="37" pageNumber="38">Isla</collectingCountry>
|
||||
Grande and the Florida Keys is 2.7% (
|
||||
<tableCitation id="F409035DB7240E398869E462FC1E4A15" box="[865,956,1629,1655]" captionStart="Table 2" captionStartId="38.[189,259,265,291]" captionTargetPageId="38" captionText="Table 2. Genetic p-distance for 16S rDNA (above the diagonal) and 12S rDNA (below the diagonal) between the main genetic lineages of Tylos Audouin, 1826 in the Caribbean and Atlantic." httpUri="http://table.plazi.org/id/EDF4666EB7270E3A8BB5E336FB734D24" pageId="37" pageNumber="38" tableUuid="EDF4666EB7270E3A8BB5E336FB734D24">Table 2</tableCitation>
|
||||
).
|
||||
</paragraph>
|
||||
<paragraph id="B93436E6B7240E398BB5E49FFB074B8A" blockId="37.[188,1399,1696,2025]" pageId="37" pageNumber="38">
|
||||
The concatenated (12S rDNA and 16S rDNA) dataset was comprised of 43 taxa and 740 characters (excluding characters with ambiguous homology), 236 of which were parsimony-informative. The specimens assigned to
|
||||
<taxonomicName id="7E8B4D65B7240E398AC7E4D2FDC24B64" authorityName="Giordani Soika" authorityYear="1954" box="[463,608,1773,1798]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" species="marcuzzii">
|
||||
<emphasis id="8BFFEAF4B7240E398AC7E4D2FDC24B64" box="[463,608,1773,1798]" italics="true" pageId="37" pageNumber="38">T. marcuzzii</emphasis>
|
||||
</taxonomicName>
|
||||
were used as outgroup. Five main lineages were identified for the ingroup taxa in the concatenated phylogenetic analyses, which formed a basal polytomy (
|
||||
<figureCitation id="21B02A63B7240E398E04E52DFACA4B4E" box="[1292,1384,1810,1836]" captionStart="Fig" captionStartId="38.[189,232,1719,1745]" captionTargetBox="[199,1386,815,1675]" captionTargetId="figure-147@38.[189,1398,810,1692]" captionTargetPageId="38" captionText="Fig. 18. Phylogenetic relationships among lineages of Tylos Audouin, 1826 from Isla Grande and their closest relatives. Majority rule consensus tree of the Bayesian posterior distribution (GTR+G+I model; 2 runs; 4 million generations; sampled every 1000; 10% burn-in), based on the dataset combining the 12S rDNA and 16S rDNA genes (Supplementary file 3). Nodes with less than 70% support (posterior probability, bootstrap, and SH-aLRT) for any dataset have been collapsed. Dashed lines represent relationships redrawn based on single gene analyses (Supplementary file 1 and Supplementary file 2). The split between the outgroup (T. marcuzzii) and the ingroup received 100% support in all analyses. Specimens from Isla Grande, Colombia are marked with a star. GenBank accession numbers for newly generated sequences are provided in parentheses." figureDoi="http://doi.org/10.5281/zenodo.6037954" httpUri="https://zenodo.org/record/6037954/files/figure.png" pageId="37" pageNumber="38">Fig. 18</figureCitation>
|
||||
): (1)
|
||||
<taxonomicName id="7E8B4D65B7240E398BE1E507FEF74B33" authorityName="Budde-Lund" authorityYear="1885" box="[233,341,1848,1873]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" species="niveus">
|
||||
<emphasis id="8BFFEAF4B7240E398BE1E507FEF74B33" box="[233,341,1848,1873]" italics="true" pageId="37" pageNumber="38">T. niveus</emphasis>
|
||||
</taxonomicName>
|
||||
from
|
||||
<collectingCountry id="C19C7676B7240E398AAAE507FD964B33" box="[418,564,1847,1874]" name="Puerto Rico" pageId="37" pageNumber="38">Puerto Rico</collectingCountry>
|
||||
; (2)
|
||||
<taxonomicName id="7E8B4D65B7240E398967E508FD7A4B30" box="[623,728,1847,1874]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" species="undetermined">
|
||||
<emphasis id="8BFFEAF4B7240E398967E508FD0F4B33" box="[623,685,1847,1873]" italics="true" pageId="37" pageNumber="38">Tylos</emphasis>
|
||||
sp.
|
||||
</taxonomicName>
|
||||
from Yaguanabo,
|
||||
<collectingCountry id="C19C7676B7240E3988B0E508FC584B33" box="[952,1018,1847,1873]" name="Cuba" pageId="37" pageNumber="38">Cuba</collectingCountry>
|
||||
; (3)
|
||||
<taxonomicName id="7E8B4D65B7240E398F3CE507FB024B33" authorityName="Budde-Lund" authorityYear="1885" box="[1076,1184,1848,1873]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" species="niveus">
|
||||
<emphasis id="8BFFEAF4B7240E398F3CE507FB024B33" box="[1076,1184,1848,1873]" italics="true" pageId="37" pageNumber="38">T. niveus</emphasis>
|
||||
</taxonomicName>
|
||||
from Florida and
|
||||
<collectingCountry id="C19C7676B7240E398BB5E562FF454B15" box="[189,231,1885,1911]" name="Iceland" pageId="37" pageNumber="38">Isla</collectingCountry>
|
||||
Grande; (4)
|
||||
<taxonomicName id="7E8B4D65B7240E398A8FE561FE514B15" authority="López-Orozco & Carpio-Díaz & Borja-Arrieta & Navas-S & Campos-Filho & Taiti & Mateos & Olazaran & Caballero & Jotty & Gómez-Estrada & Hurtado, 2022" authorityName="López-Orozco & Carpio-Díaz & Borja-Arrieta & Navas-S & Campos-Filho & Taiti & Mateos & Olazaran & Caballero & Jotty & Gómez-Estrada & Hurtado" authorityYear="2022" box="[391,499,1886,1911]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" species="negroi" status="sp. nov.">
|
||||
<emphasis id="8BFFEAF4B7240E398A8FE561FE514B15" box="[391,499,1886,1911]" italics="true" pageId="37" pageNumber="38">T. negroi</emphasis>
|
||||
</taxonomicName>
|
||||
<taxonomicNameLabel id="90CC578FB7240E398AF5E561FDFF4B1A" box="[509,605,1886,1912]" pageId="37" pageNumber="38" rank="species">sp. nov.</taxonomicNameLabel>
|
||||
; and (5)
|
||||
<taxonomicName id="7E8B4D65B7240E3989C3E562FC244B15" authorityName="Holmes & Gay" authorityYear="1909" box="[715,902,1885,1911]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" sensu="lato" species="punctatus">
|
||||
<emphasis id="8BFFEAF4B7240E3989C3E562FC244B15" box="[715,902,1885,1911]" italics="true" pageId="37" pageNumber="38">Tylos punctatus</emphasis>
|
||||
</taxonomicName>
|
||||
<taxonomicNameLabel id="90CC578FB7240E398886E561FBA64B15" box="[910,1028,1885,1912]" pageId="37" pageNumber="38" sensu="lato">sensu lato</taxonomicNameLabel>
|
||||
from the Northeastern Pacific. The range of 16S rDNA and 12S rDNA p-distances between the four basal lineages excluding
|
||||
<taxonomicName id="7E8B4D65B7240E398FEEE5BBFAD14BFF" authorityName="Holmes & Gay" authorityYear="1909" box="[1254,1395,1924,1949]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" species="punctatus">
|
||||
<emphasis id="8BFFEAF4B7240E398FEEE5BBFAD14BFF" box="[1254,1395,1924,1949]" italics="true" pageId="37" pageNumber="38">T. punctatus</emphasis>
|
||||
</taxonomicName>
|
||||
is 11.1–13.6% and 9.7–15.5%, respectively. The range of 16S rDNA and 12S rDNA p-distances between these ingroup lineages and
|
||||
<taxonomicName id="7E8B4D65B7240E398AF4E5F0FD2E4B8A" authorityName="Giordani Soika" authorityYear="1954" box="[508,652,1999,2024]" class="Malacostraca" family="Tylidae" genus="Tylos" kingdom="Animalia" order="Isopoda" pageId="37" pageNumber="38" phylum="Arthropoda" rank="species" species="marcuzzii">
|
||||
<emphasis id="8BFFEAF4B7240E398AF4E5F0FD2E4B8A" box="[508,652,1999,2024]" italics="true" pageId="37" pageNumber="38">T. marcuzzii</emphasis>
|
||||
</taxonomicName>
|
||||
is 19.4–22.2% and 19.5–23.8%, respectively.
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
</treatment>
|
||||
</document>
|
||||
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