treatments-xml/data/03/C5/8D/03C58D12C815FFA87E4FFC14FB407071.xml

<document id="A8E2CDB97F274F065A550CBF1F00C2ED" ID-DOI="10.12651/JSR.2020.9.1.035" ID-ISSN="2713-8615" ID-Zenodo-Dep="12753636" IM.bibliography_approvedBy="felipe" IM.illustrations_approvedBy="tatiana" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_approvedBy="tatiana" IM.taxonomicNames_approvedBy="tatiana" IM.treatments_approvedBy="tatiana" checkinTime="1721183779294" checkinUser="felipe" docAuthor="Kim, Pil Soo, Lee, Ki-Eun, Tak, Euon Jung &amp; Bae, Myung-Suk Kang and Jin-Woo" docDate="2020" docId="03C58D12C815FFA87E4FFC14FB407071" docLanguage="en" docName="JSpeciesRes.9.1.35-45.pdf" docOrigin="Journal of Species Research 9 (1)" docStyle="DocumentStyle:4D398BFF45FF8CA9E08F546BB06AE372.2:JSpeciesRes.2012-.journal_article" docStyleId="4D398BFF45FF8CA9E08F546BB06AE372" docStyleName="JSpeciesRes.2012-.journal_article" docStyleVersion="2" docTitle="Escherichia marmotae Liu et al. 2015" docType="treatment" docVersion="3" lastPageNumber="44" masterDocId="FFFCF56AC81CFFA17D66FD11FF8E7547" masterDocTitle="A report of 12 unrecorded prokaryotic species isolated from gastrointestinal tracts and feces of various endangered animals in Korea" masterLastPageNumber="45" masterPageNumber="35" pageNumber="44" updateTime="1721635856593" updateUser="tatiana" zenodo-license-document="CC-BY-4.0">
<mods:mods id="1117966B7E7243781A904FC933CA4668" xmlns:mods="http://www.loc.gov/mods/v3">
<mods:titleInfo id="0CF3ED839AE26F91D8B6D1DF8C17633A">
<mods:title id="80867F5BD904FBEB34EBFC0F5C5279FC">A report of 12 unrecorded prokaryotic species isolated from gastrointestinal tracts and feces of various endangered animals in Korea</mods:title>
</mods:titleInfo>
<mods:name id="172C4C3FA7876091E2C861AEFEDB1591" type="personal">
<mods:role id="AF200944E2F6628A39294E0D5A40E9D8">
<mods:roleTerm id="181DC75E2A62EFC7A5BC6CAB5E0D496E">Author</mods:roleTerm>
</mods:role>
<mods:namePart id="8BCEEC329E354C54FA917E87D814917D">Kim, Pil Soo</mods:namePart>
<mods:affiliation id="BFBDA88D5D88BDF35923F391932428D6">Department of Biology and Department of Life and Nanopharmaceutical Sciences, Kyung Hee University, Seoul 02447, Republic of Korea</mods:affiliation>
</mods:name>
<mods:name id="D1FC007979B9A582B38D6B68079055E9" type="personal">
<mods:role id="9AD3295BA31ABFC479F594D2E4F75D45">
<mods:roleTerm id="1F097A9A84EC19890F539FA7642710B8">Author</mods:roleTerm>
</mods:role>
<mods:namePart id="F7B36DA6A20B1D2E0E23791D9F253545">Lee, Ki-Eun</mods:namePart>
<mods:affiliation id="858B3275870002053AA956A92497EC71">Microorganism Resources Division, National Institute of Biological Resources, Incheon 22689, Republic of Korea</mods:affiliation>
</mods:name>
<mods:name id="AF472DC4514FD0203DCAA7E59B2C9BAE" type="personal">
<mods:role id="BB684EB3DF411D7FE8BB642D90BDA2EB">
<mods:roleTerm id="8F79897E7684A3A7CEEDCCEB8038917B">Author</mods:roleTerm>
</mods:role>
<mods:namePart id="3FC4ED805353CF21790529B8B09D6EE3">Tak, Euon Jung</mods:namePart>
<mods:affiliation id="63E4BCBC5D0E746950CBB7D0CE9D1B51">Department of Biology and Department of Life and Nanopharmaceutical Sciences, Kyung Hee University, Seoul 02447, Republic of Korea</mods:affiliation>
</mods:name>
<mods:name id="15C1A3813069E843AB5002860999C1AF" type="personal">
<mods:role id="D9E1AF09CAA4D38D03C71EA80C14D3A7">
<mods:roleTerm id="F113EA11646C3CEA8EC5CF045EE20E11">Author</mods:roleTerm>
</mods:role>
<mods:namePart id="BCE696CD76556D03CAE56C8FA59B928B">Bae, Myung-Suk Kang and Jin-Woo</mods:namePart>
</mods:name>
<mods:typeOfResource id="F16BD5C1741B841B991188C4AA1A393C">text</mods:typeOfResource>
<mods:relatedItem id="483829518702D235B3D7A5495C18DC13" type="host">
<mods:titleInfo id="49B1AE1E731C4520129F07FDC12882EB">
<mods:title id="8AF51082DE428A11E2A1A6DF50A3066F">Journal of Species Research</mods:title>
</mods:titleInfo>
<mods:part id="70173FB762FFD2A744E9638D5E45F5AC">
<mods:date id="1B689F8234C98782EDD55240059148A0">2020</mods:date>
<mods:detail id="B3FD016E9E3A94CC17D6947D7F3AB044" type="volume">
<mods:number id="96C0FEF14D35674CF85A63EEE92722CF">9</mods:number>
</mods:detail>
<mods:detail id="56AB6604341523020B30460E50D0993B" type="issue">
<mods:number id="AA0C4A03C25C164415CD05A63F08D14C">1</mods:number>
</mods:detail>
<mods:extent id="83DBF2EF5A8AEEE5B932FB421B794D91" unit="page">
<mods:start id="A19655533600C0F1C67762117D58BB34">35</mods:start>
<mods:end id="C71DF5735B1F80E94F20F2EFE6295B8B">45</mods:end>
</mods:extent>
</mods:part>
</mods:relatedItem>
<mods:classification id="BB8C1882E5062D9797D2C376728B0DB2">journal article</mods:classification>
<mods:identifier id="DB09EF019FA887F3A8FF7358C4651AB0" type="DOI">10.12651/JSR.2020.9.1.035</mods:identifier>
<mods:identifier id="BAFFF392E610E19A36A70673C8F2F4EA" type="ISSN">2713-8615</mods:identifier>
<mods:identifier id="EF4911D2C40C3CD6FD5366420484B1E3" type="Zenodo-Dep">12753636</mods:identifier>
</mods:mods>
<treatment id="03C58D12C815FFA87E4FFC14FB407071" LSID="urn:lsid:plazi:treatment:03C58D12C815FFA87E4FFC14FB407071" httpUri="http://treatment.plazi.org/id/03C58D12C815FFA87E4FFC14FB407071" lastPageNumber="44" pageId="9" pageNumber="44">
<subSubSection id="C3766F8FC815FFA87E4FFC14FA9771F2" pageId="9" pageNumber="44" type="nomenclature">
<paragraph id="8BD33C04C815FFA87E4FFC14FAA9745A" blockId="9.[809,1319,261,285]" box="[809,1319,261,285]" pageId="9" pageNumber="44">
<heading id="D09B8B68C815FFA87E4FFC14FAA9745A" box="[809,1319,261,285]" fontSize="10" level="2" pageId="9" pageNumber="44" reason="5">
<emphasis id="B918E016C815FFA87E4FFC14FAA9745A" bold="true" box="[809,1319,261,285]" pageId="9" pageNumber="44">
Description of 
<taxonomicName id="4C6C4787C815FFA87EAAFC14FB4F745B" authority="Liu et al., 2015" authorityName="Liu et al." authorityYear="2015" box="[972,1217,261,285]" class="Gammaproteobacteria" family="Enterobacteriaceae" genus="Escherichia" kingdom="Bacteria" order="Enterobacteriales" pageId="9" pageNumber="44" phylum="Proteobacteria" rank="species" species="marmotae">
<emphasis id="B918E016C815FFA87EAAFC14FB4F745B" bold="true" box="[972,1217,261,285]" italics="true" pageId="9" pageNumber="44">Escherichia marmotae</emphasis>
</taxonomicName>
VM3408
</emphasis>
</heading>
</paragraph>
<paragraph id="8BD33C04C815FFA87E59FC27FA9771F2" blockId="9.[809,1415,310,1335]" pageId="9" pageNumber="44">
Cells are Gram-staining positive, non-flagellated, and rod-shaped. Colonies are circular, smooth, convex, and ivory colored after 2 days of incubation on MA at 37℃. 
<subScript id="17E83E41C815FFA87E4FFC8CFCB174E9" attach="none" box="[809,831,407,430]" fontSize="7" pageId="9" pageNumber="44">D-</subScript>
trehalose, 
<subScript id="17E83E41C815FFA87EC8FC8CFC4B74E9" attach="right" box="[942,965,407,430]" fontSize="7" pageId="9" pageNumber="44">D-</subScript>
melibiose, 
<emphasis id="B918E016C815FFA8795DFC86FBC474E8" box="[1083,1098,407,431]" italics="true" pageId="9" pageNumber="44">β</emphasis>
- 
<subScript id="17E83E41C815FFA87935FC8CFBE774E9" attach="none" box="[1107,1129,407,430]" fontSize="7" pageId="9" pageNumber="44">D-</subScript>
glucoside, 
<emphasis id="B918E016C815FFA879B8FC89FB7E74E8" box="[1246,1264,408,431]" italics="true" pageId="9" pageNumber="44">N</emphasis>
-glucosamine, 
<emphasis id="B918E016C815FFA87E4FFCA6FCB67488" box="[809,824,439,463]" italics="true" pageId="9" pageNumber="44">β</emphasis>
-mannosamin, 
<emphasis id="B918E016C815FFA87EB5FCA9FC6B7488" box="[979,997,440,463]" italics="true" pageId="9" pageNumber="44">N</emphasis>
-galactosamin, neuraminic acid, D- mannose, D- fructose, D- galactose, L- fucose, L- rhamnose, inosine, sodium lactate, fusidic acid, D- sorbitol, glycerol, 
<subScript id="17E83E41C815FFA87E4FFF0FFCB17768" attach="none" box="[809,831,536,559]" fontSize="7" pageId="9" pageNumber="44">D-</subScript>
glucose, 
<subScript id="17E83E41C815FFA87EFDFF0FFC3F7768" attach="right" box="[923,945,536,559]" fontSize="7" pageId="9" pageNumber="44">D-</subScript>
fructose, 
<subScript id="17E83E41C815FFA87976FF0FFBA97768" attach="right" box="[1040,1063,536,559]" fontSize="7" pageId="9" pageNumber="44">D-</subScript>
serine, troleandomycin, rifamycin SV, glycyl-L- proline, L- alanine, L- aspartic acid, L- glutamic acid, L- serine, lincomycin, guanidinium chloride, niaproof 4, galacturonic acid, 
<subScript id="17E83E41C815FFA87967FF6EFB9D77D6" attach="right" box="[1025,1043,633,657]" fontSize="7" pageId="9" pageNumber="44">L-</subScript>
galactonic lactone, 
<subScript id="17E83E41C815FFA879B8FF6EFB7A77D7" attach="right" box="[1246,1268,633,656]" fontSize="7" pageId="9" pageNumber="44">D-</subScript>
gluconic acid, 
<subScript id="17E83E41C815FFA87E4FFF8EFCB177F7" attach="none" box="[809,831,665,688]" fontSize="7" pageId="9" pageNumber="44">D-</subScript>
glucuronic acid, glucuronamide, mucic acid, 
<subScript id="17E83E41C815FFA8787CFF8EFABE77F7" attach="right" box="[1306,1328,665,688]" fontSize="7" pageId="9" pageNumber="44">D-</subScript>
saccharic acid, vancomycin, tetrazolium violet, tetrazolium blue, methyl pyruvate, L- lactic acid, 
<emphasis id="B918E016C815FFA879E7FFCBFB1F77B6" box="[1153,1169,730,753]" italics="true" pageId="9" pageNumber="44">α</emphasis>
-glutaric acid, D- malic acid, 
<subScript id="17E83E41C815FFA87E07FE11FCFD7655" attach="right" box="[865,883,762,786]" fontSize="7" pageId="9" pageNumber="44">L-</subScript>
malic acid, succinic acid, nalidixic acid, 
<emphasis id="B918E016C815FFA8787CFFEBFAA47656" box="[1306,1322,762,785]" italics="true" pageId="9" pageNumber="44">α</emphasis>
-butryric acid, 
<emphasis id="B918E016C815FFA87E07FE0BFCFE7675" box="[865,880,794,818]" italics="true" pageId="9" pageNumber="44">β</emphasis>
-butryric acid, propionic acid, acetic acid, and sodium butyrate are utilized as the sole source of carbon (Biolog 
<collectionCode id="ED7DA4C1C815FFA87E06FE4AFC187634" box="[864,918,859,883]" pageId="9" pageNumber="44">GEN</collectionCode>
<collectionCode id="ED7DA4C1C815FFA87EF9FE4AFC337634" box="[927,957,859,883]" pageId="9" pageNumber="44">III</collectionCode>
). Positive for following enzyme activities: nitrate reduction, indole production, glucose acidification, 
<emphasis id="B918E016C815FFA87E4FFE8AFCB676F4" box="[809,824,923,947]" italics="true" pageId="9" pageNumber="44">β</emphasis>
-galactosidase, alkaline phosphatase, esterase (C4), leucine arylamidase, valine arylamidase, cystine arylamidase, trypsin, acid phosphatase, naphthol-AS-BI-phosphohydrolase, 
<emphasis id="B918E016C815FFA87EFAFEEDFC257153" box="[924,939,1020,1044]" italics="true" pageId="9" pageNumber="44">β</emphasis>
-galactosidase, and 
<emphasis id="B918E016C815FFA8791FFEECFB077153" box="[1145,1161,1021,1044]" italics="true" pageId="9" pageNumber="44">α</emphasis>
-glucosidase (
<collectionCode id="ED7DA4C1C815FFA87871FEEDFACD7153" box="[1303,1347,1020,1044]" pageId="9" pageNumber="44">API</collectionCode>
<collectionCode id="ED7DA4C1C815FFA8782DFEEDFA087154" box="[1355,1414,1020,1043]" pageId="9" pageNumber="44">ZYM</collectionCode>
and 
<collectionCode id="ED7DA4C1C815FFA87E30F90DFC0F7173" box="[854,897,1052,1076]" pageId="9" pageNumber="44">API</collectionCode>
20NE). Positive for the utilization of following substrates: D- mannitol, D- glucose, D- melibiose, L- fucose, 
<subScript id="17E83E41C815FFA87E4FF972FCB17133" attach="none" box="[809,831,1117,1140]" fontSize="7" pageId="9" pageNumber="44">D-</subScript>
sorbitol, 
<subScript id="17E83E41C815FFA87EFDF972FC237132" attach="right" box="[923,941,1117,1141]" fontSize="7" pageId="9" pageNumber="44">L-</subScript>
arabinose, propionate, 
<subScript id="17E83E41C815FFA879FDF972FB237132" attach="right" box="[1179,1197,1117,1141]" fontSize="7" pageId="9" pageNumber="44">L-</subScript>
proline, 
<subScript id="17E83E41C815FFA87860F972FA967132" attach="right" box="[1286,1304,1117,1141]" fontSize="7" pageId="9" pageNumber="44">L-</subScript>
rhamnose, 
<emphasis id="B918E016C815FFA87E4FF96FFCB571D2" box="[809,827,1150,1173]" italics="true" pageId="9" pageNumber="44">N</emphasis>
-acetyl-glucosamine, 
<subScript id="17E83E41C815FFA87979F992FBB871D3" attach="right" box="[1055,1078,1149,1172]" fontSize="7" pageId="9" pageNumber="44">D-</subScript>
ribose, 
<subScript id="17E83E41C815FFA879E3F992FB1571D3" attach="right" box="[1157,1179,1149,1172]" fontSize="7" pageId="9" pageNumber="44">D-</subScript>
maltose, acetate, 
<subScript id="17E83E41C815FFA87830F992FAEC71D4" attach="right" box="[1366,1378,1155,1171]" fontSize="7" pageId="9" pageNumber="44">D</subScript>
, 
<subScript id="17E83E41C815FFA87817F992FA0871D3" attach="right" box="[1393,1414,1149,1172]" fontSize="7" pageId="9" pageNumber="44">L-</subScript>
lactate, L- alanine, and L- serine (
<collectionCode id="ED7DA4C1C815FFA87908F98CFB1471F2" box="[1134,1178,1181,1205]" pageId="9" pageNumber="44">API</collectionCode>
ID 32 
<collectionCode id="ED7DA4C1C815FFA87985F98CFA8371F2" box="[1251,1293,1181,1205]" pageId="9" pageNumber="44">GN</collectionCode>
).
</paragraph>
</subSubSection>
<subSubSection id="C3766F8FC815FFA87E26F9ACFB407071" pageId="9" pageNumber="44" type="description">
<paragraph id="8BD33C04C815FFA87E26F9ACFB407071" blockId="9.[809,1415,310,1335]" pageId="9" pageNumber="44">
<materialsCitation id="3B043659C815FFA87E26F9ACFB3B7071" collectorName="Strain VM" country="South Korea" location="Gyeonggi Province" pageId="9" pageNumber="44" specimenCount="1" stateProvince="Gyeonggi">
<collectorName id="269959D2C815FFA87E26F9ACFC3D7191" box="[832,947,1213,1238]" pageId="9" pageNumber="44">Strain VM</collectorName>
3408 (= NIBRBAC000499831) was isolated from the feces of an Andean condor (
<taxonomicName id="4C6C4787C815FFA879BFF9CFFAF871B1" authorityName="Linnaeus" authorityYear="1758" box="[1241,1398,1246,1270]" class="Aves" family="Cathartidae" genus="Vultur" kingdom="Animalia" order="Accipitriformes" pageId="9" pageNumber="44" phylum="Chordata" rank="species" species="gryphus">
<emphasis id="B918E016C815FFA879BFF9CFFAF871B1" box="[1241,1398,1246,1270]" italics="true" pageId="9" pageNumber="44">Vultur gryphus</emphasis>
</taxonomicName>
), Gwacheon, 
<collectingRegion id="49A8F2E6C815FFA87ECFF9EFFBF77051" box="[937,1145,1278,1302]" country="South Korea" name="Gyeonggi" pageId="9" pageNumber="44">Gyeonggi Province</collectingRegion>
, 
<collectingCountry id="F37B7C94C815FFA879E3F9EEFB477051" box="[1157,1225,1279,1302]" name="South Korea" pageId="9" pageNumber="44">Korea</collectingCountry>
. The DNA G + C content of the 
<typeStatus id="54D782A6C815FFA87ED8F80EFC657070" box="[958,1003,1311,1335]" pageId="9" pageNumber="44">type</typeStatus>
strain is 48.49 mol
</materialsCitation>
%.
</paragraph>
</subSubSection>
</treatment>
</document>