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<document id="ADF5D69E8D112A127BF449D9882A900D" ID-DOI="10.1099/ijsem.0.004107" ID-ISSN="1466-5034" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.taxonomicNames_approvedBy="felipe" checkinTime="1644597203828" checkinUser="felipe" docAuthor="Zheng, Jinshui, Wittouck, Stijn, Salvetti, Elisa, Franz, Charles M. A. P., Harris, Hugh M. B., Mattarelli, Paola, O’Toole, Paul W., Pot, Bruno, Vandamme, Peter, Walter, Jens, Watanabe, Koichi, Wuyts, Sander, Felis, Giovanna E., Gänzle, Michael G. & Lebeer, Sarah" docDate="2020" docId="0389878AFF952169DA0BFF2EFA2C616E" docLanguage="en" docName="IntJSystEvolMicrobiol.70.4.2782-2858.pdf" docOrigin="International Journal of Systematic and Evolutionary Microbiology 70 (4)" docSource="http://dx.doi.org/10.1099/ijsem.0.004107" docStyle="DocumentStyle:C64F0A4F4C66F6FC2AD4ED89351C6242.3:IntJSystEvolMicrobiol.2017-.journal_article" docStyleId="C64F0A4F4C66F6FC2AD4ED89351C6242" docStyleName="IntJSystEvolMicrobiol.2017-.journal_article" docStyleVersion="3" docTitle="Companilactobacillus kimchii Zheng, Wittouck, Salvetti, Franz, Harris, Mattarelli, O’Toole, Pot, Vandamme, Walter, Watanabe, Wuyts, Felis, Gänzle & Lebeer, 2020, COMB. NOV." docType="treatment" docVersion="4" lastPageNumber="2806" masterDocId="FFB0FFF2FF8D2171D937FF96FFAF6267" masterDocTitle="A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae" masterLastPageNumber="2858" masterPageNumber="2782" pageNumber="2806" updateTime="1699295455673" updateUser="plazi">
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<mods:title id="4984443881C368A1BF6BF2CD18CFBFD9">A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae</mods:title>
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<mods:namePart id="8835C9B0F79A523A8D5E9672053118C7">Zheng, Jinshui</mods:namePart>
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<mods:namePart id="6489C3C8717BB6038A537500569A6EDF">Wittouck, Stijn</mods:namePart>
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<mods:namePart id="9534165D6FEC4FCEED7DAF4B789698C6">Salvetti, Elisa</mods:namePart>
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<mods:namePart id="CE84DF870F4B6D35CF06834F390D56B8">Franz, Charles M. A. P.</mods:namePart>
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<mods:namePart id="D226792D125F99C231F08D66A9F75751">Harris, Hugh M. B.</mods:namePart>
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<mods:namePart id="87E74FA49DEFA81EA6F72E83C40D695B">Mattarelli, Paola</mods:namePart>
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<mods:namePart id="9F760D47254C98350873976E4A7A5A94">O’Toole, Paul W.</mods:namePart>
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<mods:namePart id="3B249B1007ECDA66CF3AF8FA6F8E037A">Pot, Bruno</mods:namePart>
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<mods:namePart id="23AB76355FF56FA980845943BA700013">Vandamme, Peter</mods:namePart>
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<mods:namePart id="04EBDABD81D266BAB4C88DE7ADCF95BA">Walter, Jens</mods:namePart>
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<mods:namePart id="33AD4320ACC3364337A3DB3DAF9545E7">Watanabe, Koichi</mods:namePart>
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<mods:namePart id="7C68BCDC6C747409C0B8B892B19B8DFA">Wuyts, Sander</mods:namePart>
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<mods:namePart id="7AFF92132B88690EC59339641B555403">Felis, Giovanna E.</mods:namePart>
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<mods:namePart id="FB87C822773102C5E4889B9A748A808F">Gänzle, Michael G.</mods:namePart>
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<mods:title id="2733DF05022F422666552831FD409187">International Journal of Systematic and Evolutionary Microbiology</mods:title>
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<mods:date id="75B4EFD15743AD2ADB0DA29441497695">2020</mods:date>
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<mods:number id="40408C2916C88949F1BCA8776C23318F">2020-04-01</mods:number>
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<mods:number id="66F5501A7E27B3A0965FA923A574AD9A">70</mods:number>
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<mods:number id="B79302FBC09E2564ED20D55FE5AC1DE6">4</mods:number>
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<mods:url id="2839D71CF9048E10CC270029792A02EA">http://dx.doi.org/10.1099/ijsem.0.004107</mods:url>
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<mods:identifier id="804F57BB9AF238FCCD0B9743214CA4E6" type="ISSN">1466-5034</mods:identifier>
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<treatment id="0389878AFF952169DA0BFF2EFA2C616E" ID-DOI="http://doi.org/10.5281/zenodo.6309630" ID-Zenodo-Dep="6309630" LSID="urn:lsid:plazi:treatment:0389878AFF952169DA0BFF2EFA2C616E" httpUri="http://treatment.plazi.org/id/0389878AFF952169DA0BFF2EFA2C616E" lastPageNumber="2806" pageId="24" pageNumber="2806">
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<subSubSection id="C33A6517FF952169DA0BFF2EFBF9629D" pageId="24" pageNumber="2806" type="nomenclature">
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<paragraph id="8B9F369CFF952169DA0BFF2EFBF9629D" blockId="24.[827,1467,184,777]" pageId="24" pageNumber="2806">
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<heading id="D0D781F0FF952169DA0BFF2EFBF9629D" allCaps="true" bold="true" fontSize="12" level="2" pageId="24" pageNumber="2806" reason="3">
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<emphasis id="B954EA8EFF952169DA0BFF2EFBF9629D" bold="true" pageId="24" pageNumber="2806">
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DESCRIPTION OF
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<taxonomicName id="4C204D1FFF952169DD02FF2EFC06629D" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="2020" class="Bacilli" family="Lactobacillaceae" genus="Companilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="24" pageNumber="2806" phylum="Firmicutes" rank="species" species="kimchii" status="comb. nov.">
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<emphasis id="B954EA8EFF952169DD02FF2EFC06629D" bold="true" italics="true" pageId="24" pageNumber="2806">COMPANILACTOBACILLUS KIMCHII</emphasis>
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</taxonomicName>
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<taxonomicNameLabel id="A26757F5FF952169DA86FF4BFBF9629D" box="[945,1110,221,250]" pageId="24" pageNumber="2806" rank="species">COMB. NOV.</taxonomicNameLabel>
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</emphasis>
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</heading>
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</paragraph>
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</subSubSection>
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<subSubSection id="C33A6517FF952169DA0BFE91FAFB6359" pageId="24" pageNumber="2806" type="etymology">
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<paragraph id="8B9F369CFF952169DA0BFE91FAFB6359" blockId="24.[827,1467,184,777]" pageId="24" pageNumber="2806">
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<taxonomicName id="4C204D1FFF952169DA0BFE91FBDE6378" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="2020" box="[828,1137,263,287]" class="Bacilli" family="Lactobacillaceae" genus="Companilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="24" pageNumber="2806" phylum="Firmicutes" rank="species" species="kimchii">
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<emphasis id="B954EA8EFF952169DA0BFE91FBDE6378" box="[828,1137,263,287]" italics="true" pageId="24" pageNumber="2806">Companilactobacillus kimchii</emphasis>
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</taxonomicName>
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(kim’chi.i. N.L. gen. n.
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<taxonomicName id="4C204D1FFF952169DC5AFE91FA156378" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="2020" box="[1389,1466,263,287]" class="Bacilli" family="Lactobacillaceae" genus="Companilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="24" pageNumber="2806" phylum="Firmicutes" rank="species" species="kimchii">
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<emphasis id="B954EA8EFF952169DC5AFE91FA156378" box="[1389,1466,263,287]" italics="true" pageId="24" pageNumber="2806">kimchii</emphasis>
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</taxonomicName>
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from kimchi, a Korean fermented-vegetable food).
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</paragraph>
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</subSubSection>
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<subSubSection id="C33A6517FF952169DA0BFEC2FA0163CE" pageId="24" pageNumber="2806" type="reference_group">
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<paragraph id="8B9F369CFF952169DA0BFEC2FA0163CE" blockId="24.[827,1467,184,777]" pageId="24" pageNumber="2806">
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Basonym:
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<taxonomicName id="4C204D1FFF952169DA9CFEC5FAD7630B" ID-CoL="3RSSC" authority="Yoon et al. 2000" authorityName="Yoon" authorityYear="2000" box="[939,1400,339,364]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="24" pageNumber="2806" phylum="Firmicutes" rank="species" species="kimchii">
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<emphasis id="B954EA8EFF952169DA9CFEC5FB27630C" box="[939,1160,339,363]" italics="true" pageId="24" pageNumber="2806">Lactobacillus kimchii</emphasis>
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Yoon
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<emphasis id="B954EA8EFF952169DDFBFEC2FAAF630C" box="[1228,1280,339,363]" italics="true" pageId="24" pageNumber="2806">et al.</emphasis>
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2000, 1794
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</taxonomicName>
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<superScript id="7C559BD4FF952169DC4EFEC4FA226307" attach="right" box="[1401,1421,338,352]" fontSize="6" pageId="24" pageNumber="2806">VP</superScript>
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; the classification of this taxon as a separate species has been questioned but was confirmed on the basis of ANI values [
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<bibRefCitation id="EFB14B6DFF952169DC41FE07FA0C63CE" author="Yang S-J & Kim B-Y & Chun J." box="[1398,1443,401,425]" pageId="24" pageNumber="2806" pagination="4515 - 4517" refId="ref64812" refString="119. Yang S-J, Kim B-Y, Chun J. Rejection of reclassification of Lactobacillus kimchii and Lactobacillus bobalius as later subjective synonyms of Lactobacillus paralimentarius using comparative genomics. Int J Syst Evol Microbiol 2017; 67: 4515 - 4517." type="journal article" year="2017">119</bibRefCitation>
|
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|
].
|
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|
|
</paragraph>
|
|||
|
|
</subSubSection>
|
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|
|
<subSubSection id="C33A6517FF952169DA0BFE29FB8D6006" pageId="24" pageNumber="2806" type="description">
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|
|
<paragraph id="8B9F369CFF952169DA0BFE29FC276054" blockId="24.[827,1467,184,777]" pageId="24" pageNumber="2806">
|
|||
|
|
Growth occurs in the range of 10 to 40°C and with pentoses, hexoses, and disaccharides as carbon sources [
|
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|
|
<bibRefCitation id="EFB14B6DFF952169DC79FE48FAD36391" author="Park CS & Kho YH & Kang KH & Yoon JH & Kang SS" box="[1358,1404,478,502]" pageId="24" pageNumber="2806" pagination="1789 - 1795" refId="ref65496" refString="134. Park CS, Kho YH, Kang KH, Yoon JH, Kang SS et al. Lactobacillus kimchii sp. nov., a new species from kimchi. Int J Syst Evol Microbiol 2000; 50: 1789 - 1795." type="journal article" year="2000">134</bibRefCitation>
|
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|
|
]. The genome size is 2.74 Mbp. The mol% G+C content of DNA is 35.1.
|
|||
|
|
</paragraph>
|
|||
|
|
<paragraph id="8B9F369CFF952169DA0BFDDFFB8D6006" blockId="24.[827,1467,184,777]" box="[828,1058,585,609]" pageId="24" pageNumber="2806">Isolated from kimchi.</paragraph>
|
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|
|
</subSubSection>
|
|||
|
|
<subSubSection id="C33A6517FF952169DA0BFDE0FB6E60CA" pageId="24" pageNumber="2806" type="materials_examined">
|
|||
|
|
<paragraph id="8B9F369CFF952169DA0BFDE0FB6E60CA" blockId="24.[827,1467,184,777]" pageId="24" pageNumber="2806">
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|||
|
|
<materialsCitation id="3B483CC1FF952169DA0BFDE0FB1460C5" accessionNumber="DSM 13961, JCM 10707" collectionCode="T, ATCC, DSM, JCM" pageId="24" pageNumber="2806" specimenCode="BAA-131, KCTC 8903" specimenCount="1" typeStatus="holotype">
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|||
|
|
The
|
|||
|
|
<typeStatus id="549B883EFF952169DA40FDE1FC0960E8" box="[887,934,631,655]" pageId="24" pageNumber="2806">type</typeStatus>
|
|||
|
|
strain is MT-1077
|
|||
|
|
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<collectionCode id="ED31AE59FF952169DDA5FDE3FB3360E4" box="[1170,1180,629,643]" name="Tavera, Department of Geology and Geophysics" pageId="24" pageNumber="2806">T</collectionCode>
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</superScript>
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=
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|||
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|
<collectionCode id="ED31AE59FF952169DD9EFDE1FB5E60E8" box="[1193,1265,631,655]" country="USA" httpUri="http://grbio.org/cool/b0k1-wg01" name="American Type Culture Collection" pageId="24" pageNumber="2806">ATCC</collectionCode>
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|||
|
|
<specimenCode id="DB869EE7FF952169DC33FDE1FAC760E8" box="[1284,1384,631,655]" collectionCode="BAA-" pageId="24" pageNumber="2806">BAA-131</specimenCode>
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<superScript id="7C559BD4FF952169DC5FFDE3FADD60E4" attach="none" box="[1384,1394,629,643]" fontSize="6" pageId="24" pageNumber="2806">
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<collectionCode id="ED31AE59FF952169DC5FFDE3FADD60E4" box="[1384,1394,629,643]" name="Tavera, Department of Geology and Geophysics" pageId="24" pageNumber="2806">T</collectionCode>
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</superScript>
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|
|
=
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|||
|
|
<collectionCode id="ED31AE59FF952169DCB7FDE1FA1560E8" box="[1408,1466,631,655]" country="Germany" httpUri="http://grbio.org/cool/4644-42cg" name="Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH" pageId="24" pageNumber="2806">DSM</collectionCode>
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|||
|
|
13961
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|
|
<superScript id="7C559BD4FF952169DA4BFD02FC2960C5" attach="none" box="[892,902,660,674]" fontSize="6" pageId="24" pageNumber="2806">
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|
<collectionCode id="ED31AE59FF952169DA4BFD02FC2960C5" box="[892,902,660,674]" name="Tavera, Department of Geology and Geophysics" pageId="24" pageNumber="2806">T</collectionCode>
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|||
|
|
</superScript>
|
|||
|
|
=
|
|||
|
|
<collectionCode id="ED31AE59FF952169DAA4FD03FC6860CA" box="[915,967,661,685]" country="Japan" httpUri="http://grbio.org/cool/iyky-md37" name="Japan Collection of Microorganisms" pageId="24" pageNumber="2806">JCM</collectionCode>
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|||
|
|
10707
|
|||
|
|
<superScript id="7C559BD4FF952169DD3AFD02FBB860C5" attach="none" box="[1037,1047,660,674]" fontSize="6" pageId="24" pageNumber="2806">
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<collectionCode id="ED31AE59FF952169DD3AFD02FBB860C5" box="[1037,1047,660,674]" name="Tavera, Department of Geology and Geophysics" pageId="24" pageNumber="2806">T</collectionCode>
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|||
|
|
</superScript>
|
|||
|
|
=
|
|||
|
|
<specimenCode id="DB869EE7FF952169DD13FD03FB0A60CA" box="[1060,1189,661,685]" collectionCode="KCTC" country="South Korea" httpUri="http://grbio.org/cool/2inw-p49s" name="Korean Collection for Type Cultures" pageId="24" pageNumber="2806">KCTC 8903</specimenCode>
|
|||
|
|
PT
|
|||
|
|
</materialsCitation>
|
|||
|
|
.
|
|||
|
|
</paragraph>
|
|||
|
|
</subSubSection>
|
|||
|
|
<subSubSection id="C33A6517FF952169DA0BFD55FA2760BC" box="[828,1416,707,731]" pageId="24" pageNumber="2806" type="description">
|
|||
|
|
<paragraph id="8B9F369CFF952169DA0BFD55FA2760BC" blockId="24.[827,1467,184,777]" box="[828,1416,707,731]" pageId="24" pageNumber="2806">Genome sequence accession number: AZDH00000000.</paragraph>
|
|||
|
|
</subSubSection>
|
|||
|
|
<subSubSection id="C33A6517FF952169DA0BFD67FA2C616E" box="[828,1411,753,777]" pageId="24" pageNumber="2806" type="materials_examined">
|
|||
|
|
<paragraph id="8B9F369CFF952169DA0BFD67FA2C616E" blockId="24.[827,1467,184,777]" box="[828,1411,753,777]" pageId="24" pageNumber="2806">
|
|||
|
|
16S RNA gene sequence accession number:
|
|||
|
|
<accessionNumber id="9473AB7FFF952169DC39FD67FAD0616E" box="[1294,1407,753,777]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/AF183558" pageId="24" pageNumber="2806">AF183558</accessionNumber>
|
|||
|
|
.
|
|||
|
|
</paragraph>
|
|||
|
|
</subSubSection>
|
|||
|
|
</treatment>
|
|||
|
|
</document>
|