149 lines
9.9 KiB
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149 lines
9.9 KiB
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@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
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@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
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@prefix bibo: <http://purl.org/ontology/bibo/> .
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@prefix cito: <http://purl.org/spar/cito/> .
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@prefix dc: <http://purl.org/dc/elements/1.1/> .
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@prefix dwc: <http://rs.tdwg.org/dwc/terms/> .
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@prefix dwcFP: <http://filteredpush.org/ontologies/oa/dwcFP#> .
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@prefix fabio: <http://purl.org/spar/fabio/> .
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@prefix trt: <http://plazi.org/vocab/treatment#> .
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@prefix xlink: <http://www.w3.org/1999/xlink/> .
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<http://treatment.plazi.org/id/702887CF7A49D252FFA633F25DABDAAD>
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cito:cites <http://dx.doi.org/10.5281/zenodo.8235360>, <http://dx.doi.org/10.5281/zenodo.8235362>, <http://dx.doi.org/10.5281/zenodo.8235352>, <http://dx.doi.org/10.5281/zenodo.8235364>, <http://dx.doi.org/10.5281/zenodo.8235366> ;
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dc:creator "Toporkova, Yana Y.; Askarova, Elena K.; Gorina, Svetlana S.; Mukhtarova, Lucia S.; Grechkin, Alexander N." ;
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dc:title "Selaginella moellendorffii subsp. oxylipin Hieron. 1901" ;
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trt:augmentsTaxonConcept <http://taxon-concept.plazi.org/id/Plantae/Selaginella_moellendorffii_oxylipin_Hieron_1901> ;
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trt:publishedIn <http://dx.doi.org/10.1016/j.phytochem.2021.113051> ;
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a trt:Treatment .
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<http://dx.doi.org/10.1016/j.phytochem.2021.113051>
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bibo:endPage "12" ;
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bibo:journal "Phytochemistry" ;
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bibo:pubDate "2022-03-31" ;
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bibo:series "113051" ;
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bibo:startPage "1" ;
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bibo:volume "195" ;
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dc:creator "Toporkova, Yana Y.; Askarova, Elena K.; Gorina, Svetlana S.; Mukhtarova, Lucia S.; Grechkin, Alexander N." ;
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dc:date "2022" ;
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dc:title "Oxylipin biosynthesis in spikemoss Selaginella moellendorffii: Identification of allene oxide synthase (CYP 74 L 2) and hydroperoxide lyase (CYP 74 L 1)" ;
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fabio:hasPart <http://dx.doi.org/10.5281/zenodo.8235360>, <http://dx.doi.org/10.5281/zenodo.8235362>, <http://dx.doi.org/10.5281/zenodo.8235352>, <http://dx.doi.org/10.5281/zenodo.8235364>, <http://dx.doi.org/10.5281/zenodo.8235366> ;
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a fabio:JournalArticle .
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<http://taxon-concept.plazi.org/id/Plantae/Selaginella_moellendorffii_oxylipin_Hieron_1901>
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dwc:authority "Hieron., 1901" ;
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dwc:authorityName "Hieron." ;
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dwc:authorityYear "1901" ;
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dwc:class "Lycopodiopsida" ;
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dwc:family "Selaginellaceae" ;
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dwc:genus "Selaginella" ;
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dwc:kingdom "Plantae" ;
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dwc:order "Selaginellales" ;
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dwc:phylum "Tracheophyta" ;
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dwc:rank "subSpecies" ;
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dwc:scientificNameAuthorship "Hieron., 1901" ;
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dwc:species "moellendorffii" ;
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dwc:subSpecies "oxylipin" ;
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trt:hasTaxonName <http://taxon-name.plazi.org/id/Plantae/Selaginella_moellendorffii_oxylipin> ;
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a dwcFP:TaxonConcept .
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<http://taxon-name.plazi.org/id/Plantae/Selaginella_moellendorffii_oxylipin>
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dwc:class "Lycopodiopsida" ;
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dwc:family "Selaginellaceae" ;
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dwc:genus "Selaginella" ;
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dwc:kingdom "Plantae" ;
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dwc:order "Selaginellales" ;
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dwc:phylum "Tracheophyta" ;
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dwc:rank "subSpecies" ;
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dwc:species "moellendorffii" ;
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dwc:subSpecies "oxylipin" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Plantae/Selaginella_moellendorffii> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Plantae/Selaginella_moellendorffii>
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dwc:class "Lycopodiopsida" ;
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dwc:family "Selaginellaceae" ;
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dwc:genus "Selaginella" ;
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dwc:kingdom "Plantae" ;
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dwc:order "Selaginellales" ;
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dwc:phylum "Tracheophyta" ;
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dwc:rank "species" ;
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dwc:species "moellendorffii" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Plantae/Selaginella> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Plantae/Selaginella>
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dwc:class "Lycopodiopsida" ;
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dwc:family "Selaginellaceae" ;
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dwc:genus "Selaginella" ;
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dwc:kingdom "Plantae" ;
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dwc:order "Selaginellales" ;
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dwc:phylum "Tracheophyta" ;
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dwc:rank "genus" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Plantae/Selaginellaceae> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Plantae/Selaginellaceae>
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dwc:class "Lycopodiopsida" ;
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dwc:family "Selaginellaceae" ;
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dwc:kingdom "Plantae" ;
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dwc:order "Selaginellales" ;
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dwc:phylum "Tracheophyta" ;
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dwc:rank "family" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Plantae/Selaginellales> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Plantae/Selaginellales>
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dwc:class "Lycopodiopsida" ;
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dwc:kingdom "Plantae" ;
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dwc:order "Selaginellales" ;
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dwc:phylum "Tracheophyta" ;
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dwc:rank "order" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Plantae/Lycopodiopsida> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Plantae/Lycopodiopsida>
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dwc:class "Lycopodiopsida" ;
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dwc:kingdom "Plantae" ;
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dwc:phylum "Tracheophyta" ;
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dwc:rank "class" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Plantae/Tracheophyta> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Plantae/Tracheophyta>
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dwc:kingdom "Plantae" ;
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dwc:phylum "Tracheophyta" ;
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dwc:rank "phylum" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Plantae> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Plantae>
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dwc:kingdom "Plantae" ;
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dwc:rank "kingdom" ;
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a dwcFP:TaxonName .
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<http://dx.doi.org/10.5281/zenodo.8235360>
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dc:description "Fig. 5. The TIC chromatogram of oxylipins (Me/TMS) from the aerial parts of S. moellendorffii plants. DE1, (ω5Z)-etheroleic acid; DE2, etheroleic acid; DE3, (11Z)- etheroleic acid; DE4, etherolenic acid; DE5, (ω5Z)-etherolenic acid; DE6, (11Z)-etherolenic acid; 5, 11-hydroxy-12,13-epoxy-9-octadecenoic acid; 5a, 11-hydroxy- 12,13-epoxy-9,15-octadecadienoic acid; 10, eicosanoic acid; 11, 13-ketooctadecadienoic acid; 12, epimeric 9-hydroxy-12,13-epoxy-10-octadecenoic acid; 12a, epimeric 9-hydroxy-12,13-epoxy-10,15-octadecadienoic acid. Additionally, 13-HOD, as well as cis and trans isomers of 12-OPDA were detected." ;
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fabio:hasRepresentation <https://zenodo.org/record/8235360/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.8235362>
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dc:description "Fig. 6. The multiple alignment of the CYP74L1, CYP74L2, and CYP74L3 sequences of S. moellendorffii with other CYP74s described earlier. Conservative structures are marked as follows: the I-helix groove region (SRS-4) is numbered 1–6, two positions after the I-helix groove region are marked by ◆ symbol, the F/L toggle is marked by ▾ symbol." ;
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fabio:hasRepresentation <https://zenodo.org/record/8235362/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.8235352>
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dc:description "Fig. 1. The multiple alignment of the CYP74L1, CYP74L2, and CYP74L3 sequences of S. moellendorffii. Conservative structures are marked as follows: the I-helix groove region (SRS-4) is numbered 1–6, two positions after the I-helix groove region are marked by ▾ symbol, the F/L toggle, the ERR-triad, the PPV domain, and the cysteinyl ligand are marked by ◆, ●, □, and ◊ symbols, respectively." ;
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fabio:hasRepresentation <https://zenodo.org/record/8235352/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.8235364>
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dc:description "Fig. 7. The scheme of catalytic mechanisms of the CYP74L enzymes." ;
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fabio:hasRepresentation <https://zenodo.org/record/8235364/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.8235366>
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dc:description "Fig. 8. The unrooted phylogenetic tree of the CYP74 clan. Classified CYP74 subfamilies are marked with their letter designation (A, B, C etc.). Subfamilies consisting of more than one member are outlined with unclosed curves (semi-ellipses). Plant CYP74s: As, Allium sativum; AsDES, CYP74H1, GI:83414021; At, Arabidopsis thaliana; AtAOS, CYP74A1, GI:15239032; AtHPL, CYP74B2, GI:3822403; Ca, Capsicum annuum; CaHPL, CYP74B1, GI:1272340; Cm, Cucumis melo; CmHPL/EAS, CYP74C2, GI:14134199; Cs, C. sativus; CsHPL/EAS, CYP74C1, GI:101211324; CsHPL/EAS/AOS, CYP74C31 GI:101211574; Dc, Daucus carota; DcAOS, CYP74B33, GI:10821971; Gm, Glycine max; GmHPL/EAS (CYP74C13_Gm), KRH29541.1; Hv, Hordeum vulgare; HvAOS2, CYP74A3, GI:7452981; HvHPL, CYP74F3, GI: 22265998; Kf, K. flaccidum (green alga); KfAOS, SI:LC032459; Le, Solanum lycopersicum; LeAOS1, CYP74A1, GI:7581989; LeAOS2, CYP74A2, GI:7677376; LeAOS3, CYP74C3, GI:25991603; LeHPL, CYP74B3, GI:7677378; LeDES (CYP74D1), NP001234527.1; Lu, Linum usitatissimum; LuAOS, CYP74A1, GI:1352186; LuDES, CYP74B16, GI:379048766; Mp, M. polymorpha; MpAOS1, SI:LC032457.1, MpAOS2, SI:LC032458.1; Mt, Medicago truncatula; MtHPL3, CYP74B5, GI:63081244; MtHPL1/EAS, CYP74C13, GI:33504430; Nt, Nicotiana tabacum; NtDES, CYP74D3; GI: 107799697; Os, Oryza sativa; OsAOS, CYP74A4, GI:115455571; OsHPL1, CYP74E2, GI:115445057; OsHPL2, CYP74E1, GI:125538638; Pa, Parthenium argentatum; PaAOS, CYP74A1, GI:218511958; Pd, Prunus dulcis; PdHPL, CYP74C5, GI:33300600; Pg, Psidium guajava; PgHPL, CYP74B5, GI:13183137; Pi, Petunia inflata; PiCYP74C9, GI:85720841; Pp, P. patens; PpAOS1, CYP74A1, GI:22217985; PpAOS2, CYP74A8, GI:168014176; PpHPL, CYP74G1, GI:76057841; Ra, Ranunculus acris; RaDES, CYP74Q1, GI:768564485; Rj, Ranunculus japonicus; RjEAS, CYP74A88, SI:MK061531; Sm, S. moellendorffii; SmDES1, CYP74M1, GI:9660714; SmEAS, CYP74M2, GI:9637471 SmDES2, CYP74M3, GI:9654395; SmAOS2, CYP74K3, EFJ20163.1; CYP74L1, XP002969700.1; CYP74L2, XP002972651.1; CYP74L3, EFJ25870.1; St, Solanum tuberosum; StAOS2, CYP74A6, GI:86769479; StAOS3, CYP74C10, GI:56605358; StHPL/EAS, CYP74C4, GI:102588560; StDES, CYP74D2, GI:12667099; Zm, Zea mays; ZmAOS, CYP74A19, GI:223947589; ZmHPL, CYP74F2, GI:162462890. CYP74 clan members: Es, E. siliculosus (brown alga); EsEAS, CYP5164B1, GI:1109557544; Mn, M. nodulans (proteobacteria); MnHPL, SI:WP_015932840.1; Msp, Methylobacterium sp. 4–46; MspCYP74, SI:WP_012335549.1. Ap, A. palmata (Metazoa); ApAOS, GI:187948710; Bf, B. floridae (Metazoa); BfEAS, CYP440A1, GI:189312561; Nv, N. vectensis (Metazoa); NvEAS, CYP443D1, GI:5516222; NvHPL/EAS CYP443C1 (GenBank QJI54761.1)." ;
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fabio:hasRepresentation <https://zenodo.org/record/8235366/files/figure.png> ;
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a fabio:Figure .
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