918 lines
54 KiB
Turtle
918 lines
54 KiB
Turtle
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@prefix bibo: <http://purl.org/ontology/bibo/> .
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@prefix cito: <http://purl.org/spar/cito/> .
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@prefix dc: <http://purl.org/dc/elements/1.1/> .
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@prefix dwc: <http://rs.tdwg.org/dwc/terms/> .
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@prefix dwcFP: <http://filteredpush.org/ontologies/oa/dwcFP#> .
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@prefix fabio: <http://purl.org/spar/fabio/> .
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@prefix trt: <http://plazi.org/vocab/treatment#> .
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@prefix xlink: <http://www.w3.org/1999/xlink/> .
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<http://treatment.plazi.org/id/F8371571B73B3268FDF4FEDFBE482CE1>
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cito:cites <http://taxon-concept.plazi.org/id/Animalia/Stichopus_badionotus_Selenka_1867>, <http://taxon-concept.plazi.org/id/Animalia/Stichopus_variegatus_Semper_1868>, <http://taxon-concept.plazi.org/id/Animalia/Isostichopus_maculatus_phoenius_Clark_1922>, <http://taxon-concept.plazi.org/id/Animalia/Isostichopus_maculatus_maculatus_Greeff_1882>, <http://taxon-concept.plazi.org/id/Animalia/Isostichopus_fuscus_Hamel_2017>, <http://dx.doi.org/10.5281/zenodo.13743182>, <http://dx.doi.org/10.5281/zenodo.13710659>, <http://dx.doi.org/10.5281/zenodo.13710681>, <http://dx.doi.org/10.5281/zenodo.13710683>, <http://dx.doi.org/10.5281/zenodo.13710649>, <http://dx.doi.org/10.5281/zenodo.13710685>, <http://dx.doi.org/10.5281/zenodo.13710647>, <http://dx.doi.org/10.5281/zenodo.13710657>, <http://dx.doi.org/10.5281/zenodo.13710655> ;
|
||
dc:creator "Borrero-Pérez, Giomar H.; Solís-Marín, Francisco A.; Lessios, Harilaos" ;
|
||
dc:title "Isostichopus fuscus" ;
|
||
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|
||
trt:augmentsTaxonConcept <http://taxon-concept.plazi.org/id/Animalia/Isostichopus_fuscus_Ludwig_1875> ;
|
||
trt:citesTaxonName <http://taxon-name.plazi.org/id/Animalia/Stichopus_badionotus>, <http://taxon-name.plazi.org/id/Plantae/Ulva_undetermined>, <http://taxon-name.plazi.org/id/Animalia/Anoplodium_undetermined> ;
|
||
trt:deprecates <http://taxon-concept.plazi.org/id/Animalia/Stichopus_fuscus_Ludwig_1875>, <http://taxon-concept.plazi.org/id/Animalia/Stichopus_fusus_Ludwig_1875> ;
|
||
trt:publishedIn <http://dx.doi.org/10.5852/ejt.2024.949.2641> ;
|
||
a trt:Treatment .
|
||
|
||
<http://dx.doi.org/10.5852/ejt.2024.949.2641>
|
||
bibo:endPage "96" ;
|
||
bibo:issue "1" ;
|
||
bibo:journal "European Journal of Taxonomy" ;
|
||
bibo:pubDate "2024-08-30" ;
|
||
bibo:startPage "1" ;
|
||
bibo:volume "949" ;
|
||
dc:creator "Borrero-Pérez, Giomar H.; Solís-Marín, Francisco A.; Lessios, Harilaos" ;
|
||
dc:date "2024" ;
|
||
dc:title "Understanding the color variability and resolving taxonomic confusion in the sea cucumber Isostichopus badionotus (Echinodermata, Holothuroidea): a revision of the genus Isostichopus" ;
|
||
fabio:hasPart <http://dx.doi.org/10.5281/zenodo.13743182>, <http://dx.doi.org/10.5281/zenodo.13710659>, <http://dx.doi.org/10.5281/zenodo.13710681>, <http://dx.doi.org/10.5281/zenodo.13710683>, <http://dx.doi.org/10.5281/zenodo.13710649>, <http://dx.doi.org/10.5281/zenodo.13710685>, <http://dx.doi.org/10.5281/zenodo.13710647>, <http://dx.doi.org/10.5281/zenodo.13710657>, <http://dx.doi.org/10.5281/zenodo.13710655> ;
|
||
a fabio:JournalArticle .
|
||
|
||
<http://taxon-concept.plazi.org/id/Animalia/Isostichopus_fuscus_Ludwig_1875>
|
||
dwc:authority "(Ludwig, 1875)" ;
|
||
dwc:baseAuthorityName "Ludwig" ;
|
||
dwc:baseAuthorityYear "1875" ;
|
||
dwc:class "Holothuroidea" ;
|
||
dwc:family "Stichopodidae" ;
|
||
dwc:genus "Isostichopus" ;
|
||
dwc:kingdom "Animalia" ;
|
||
dwc:order "Synallactida" ;
|
||
dwc:phylum "Echinodermata" ;
|
||
dwc:rank "species" ;
|
||
dwc:scientificNameAuthorship "(Ludwig, 1875)" ;
|
||
dwc:species "fuscus" ;
|
||
rdfs:seeAlso <https://www.catalogueoflife.org/data/taxon/3QC2D> ;
|
||
trt:hasTaxonName <http://taxon-name.plazi.org/id/Animalia/Isostichopus_fuscus> ;
|
||
a dwcFP:TaxonConcept .
|
||
|
||
<http://taxon-concept.plazi.org/id/Animalia/Stichopus_fuscus_Ludwig_1875>
|
||
dwc:authority "Ludwig, 1875: 97 - 98", "Ludwig, 1875" ;
|
||
dwc:authorityName "Ludwig" ;
|
||
dwc:authorityPageNumber "97 - 98" ;
|
||
dwc:authorityYear "1875" ;
|
||
dwc:class "Holothuroidea" ;
|
||
dwc:family "Stichopodidae" ;
|
||
dwc:genus "Stichopus" ;
|
||
dwc:kingdom "Animalia" ;
|
||
dwc:order "Synallactida" ;
|
||
dwc:phylum "Echinodermata" ;
|
||
dwc:rank "species" ;
|
||
dwc:scientificNameAuthorship "Ludwig, 1875" ;
|
||
dwc:species "fuscus" ;
|
||
rdfs:seeAlso <https://www.catalogueoflife.org/data/taxon/6ZRT3> ;
|
||
trt:hasTaxonName <http://taxon-name.plazi.org/id/Animalia/Stichopus_fuscus> ;
|
||
a dwcFP:TaxonConcept .
|
||
|
||
<http://taxon-concept.plazi.org/id/Animalia/Stichopus_fusus_Ludwig_1875>
|
||
dwc:authorityName "Ludwig" ;
|
||
dwc:authorityYear "1875" ;
|
||
dwc:class "Holothuroidea" ;
|
||
dwc:family "Stichopodidae" ;
|
||
dwc:genus "Stichopus" ;
|
||
dwc:kingdom "Animalia" ;
|
||
dwc:order "Synallactida" ;
|
||
dwc:phylum "Echinodermata" ;
|
||
dwc:rank "species" ;
|
||
dwc:scientificNameAuthorship "Ludwig, 1875" ;
|
||
dwc:species "fusus" ;
|
||
trt:hasTaxonName <http://taxon-name.plazi.org/id/Animalia/Stichopus_fusus> ;
|
||
a dwcFP:TaxonConcept .
|
||
|
||
<http://taxon-concept.plazi.org/id/Animalia/Stichopus_badionotus_Selenka_1867>
|
||
# Warning: Removing "(CH" from authority ;
|
||
dwc:authority "(Selenka, 1867)" ;
|
||
dwc:authorityName "Chips (CH" ;
|
||
dwc:baseAuthorityName "Selenka" ;
|
||
dwc:baseAuthorityYear "1867" ;
|
||
dwc:class "Holothuroidea" ;
|
||
dwc:family "Stichopodidae" ;
|
||
dwc:genus "Stichopus" ;
|
||
dwc:kingdom "Animalia" ;
|
||
dwc:order "Synallactida" ;
|
||
dwc:phylum "Echinodermata" ;
|
||
dwc:rank "species" ;
|
||
dwc:scientificNameAuthorship "(Selenka, 1867)" ;
|
||
dwc:species "badionotus" ;
|
||
trt:hasTaxonName <http://taxon-name.plazi.org/id/Animalia/Stichopus_badionotus> ;
|
||
a dwcFP:TaxonConcept .
|
||
|
||
<http://taxon-concept.plazi.org/id/Animalia/Stichopus_variegatus_Semper_1868>
|
||
dwc:authority "Semper, 1868" ;
|
||
dwc:authorityName "Semper" ;
|
||
dwc:authorityYear "1868" ;
|
||
dwc:class "Holothuroidea" ;
|
||
dwc:family "Stichopodidae" ;
|
||
dwc:genus "Stichopus" ;
|
||
dwc:kingdom "Animalia" ;
|
||
dwc:order "Synallactida" ;
|
||
dwc:phylum "Echinodermata" ;
|
||
dwc:rank "species" ;
|
||
dwc:scientificNameAuthorship "Semper, 1868" ;
|
||
dwc:species "variegatus" ;
|
||
trt:hasTaxonName <http://taxon-name.plazi.org/id/Animalia/Stichopus_variegatus> ;
|
||
a dwcFP:TaxonConcept .
|
||
|
||
<http://taxon-concept.plazi.org/id/Animalia/Isostichopus_maculatus_phoenius_Clark_1922>
|
||
dwc:baseAuthorityName "Clark" ;
|
||
dwc:baseAuthorityYear "1922" ;
|
||
dwc:class "Holothuroidea" ;
|
||
dwc:family "Stichopodidae" ;
|
||
dwc:genus "Isostichopus" ;
|
||
dwc:kingdom "Animalia" ;
|
||
dwc:order "Synallactida" ;
|
||
dwc:phylum "Echinodermata" ;
|
||
dwc:rank "subSpecies" ;
|
||
dwc:scientificNameAuthorship "(Clark, 1922)" ;
|
||
dwc:species "maculatus" ;
|
||
dwc:subSpecies "phoenius" ;
|
||
trt:hasTaxonName <http://taxon-name.plazi.org/id/Animalia/Isostichopus_maculatus_phoenius> ;
|
||
a dwcFP:TaxonConcept .
|
||
|
||
<http://taxon-concept.plazi.org/id/Animalia/Isostichopus_maculatus_maculatus_Greeff_1882>
|
||
dwc:baseAuthorityName "Greeff" ;
|
||
dwc:baseAuthorityYear "1882" ;
|
||
dwc:class "Holothuroidea" ;
|
||
dwc:family "Stichopodidae" ;
|
||
dwc:genus "Isostichopus" ;
|
||
dwc:kingdom "Animalia" ;
|
||
dwc:order "Synallactida" ;
|
||
dwc:phylum "Echinodermata" ;
|
||
dwc:rank "subSpecies" ;
|
||
dwc:scientificNameAuthorship "(Greeff, 1882)" ;
|
||
dwc:species "maculatus" ;
|
||
dwc:subSpecies "maculatus" ;
|
||
trt:hasTaxonName <http://taxon-name.plazi.org/id/Animalia/Isostichopus_maculatus_maculatus> ;
|
||
a dwcFP:TaxonConcept .
|
||
|
||
<http://taxon-concept.plazi.org/id/Animalia/Isostichopus_fuscus_Hamel_2017>
|
||
dwc:authority "(Hamel et al. 2017)" ;
|
||
dwc:baseAuthorityName "Hamel" ;
|
||
dwc:baseAuthorityYear "2017" ;
|
||
dwc:class "Holothuroidea" ;
|
||
dwc:family "Stichopodidae" ;
|
||
dwc:genus "Isostichopus" ;
|
||
dwc:kingdom "Animalia" ;
|
||
dwc:order "Synallactida" ;
|
||
dwc:phylum "Echinodermata" ;
|
||
dwc:rank "species" ;
|
||
dwc:scientificNameAuthorship "(Hamel, 2017)" ;
|
||
dwc:species "fuscus" ;
|
||
trt:hasTaxonName <http://taxon-name.plazi.org/id/Animalia/Isostichopus_fuscus> ;
|
||
a dwcFP:TaxonConcept .
|
||
|
||
<http://taxon-name.plazi.org/id/Animalia/Isostichopus_fuscus>
|
||
dwc:class "Holothuroidea" ;
|
||
dwc:family "Stichopodidae" ;
|
||
dwc:genus "Isostichopus" ;
|
||
dwc:kingdom "Animalia" ;
|
||
dwc:order "Synallactida" ;
|
||
dwc:phylum "Echinodermata" ;
|
||
dwc:rank "species" ;
|
||
dwc:species "fuscus" ;
|
||
trt:hasParentName <http://taxon-name.plazi.org/id/Animalia/Isostichopus> ;
|
||
a dwcFP:TaxonName .
|
||
|
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<http://dx.doi.org/10.5281/zenodo.13743182>
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dc:description "Fig. 1 (continued on next page). Color patterns of species and subspecies of Isostichopus Deichmann, 1958. A–J. Isostichopus badionotus (Selenka, 1867). A. Pink background and dark brown spots (Chips pattern – CH) (BT99, Panamá). B. Close-up of A, note large dark brown spots and small dots. C. Light brown background and darker ocellar spots (CH pattern) (INV TEJ1125-Ma10, Colombia). D. Close-up of C, note large ocellar spots and small black dots. E. Uniform black background (Uniform pattern – U) (BT59, Panamá). F. Beige background color with a reticulum of darker brown and yellow papillae (Reticulated pattern – R) (USNM 1659460-BT20, Panamá). G. Close-up of F, reticulated pattern in detail. H. Reticulated pattern with brown papillae (R pattern) (INV TEJ1167-SM4R, Colombia). I. Close-up of H, reticulated pattern in detail. J. Black background and yellow papillae (Black and yellow pattern-BY) (INV TEJ1176-SM13, Colombia). K–Y. Isostichopus maculatus phoenius (Clark, (BI), Maximum Likelihood (ML), and Neighbour-Joining (NJ). BI and ML were performed, using the GTR evolutionary model and NJ using K2P distances. BI was performed with MrBayes ver. 3.2.6 (Ronquist & Huelsenbeck 2003); the data set was run twice, using four Markov chains for ten million generations; trees were sampled every 500th generation, the first 2.5 million generations were discarded, and a 50% majority tree was obtained. ML analysis was performed in MEGA X (Kumar et al. 2018); support was assessed with 1000 bootstrap reiterations." ;
|
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fabio:hasRepresentation <https://zenodo.org/record/13743182/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.13710659>
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dc:description "Fig. 11. Light microscope photographs showing ossicles from the mouth membrane, anterior cloaca, posterior cloaca, and gonads of the species and subspecies of Isostichopus Deichmann, 1958. A. I. badionotus (Selenka, 1867) (mouth membrane and gonads from the lectotype MCZ HOL-509; anterior and posterior cloaca from USNM 1659457-IbBT116). B. I. maculatus phoenius (Clark, 1922) (all ossicles from the holotype MCZ HOL-1182). C. I. maculatus maculatus (Greeff, 1882) (all ossicles from the neotype USNM E16150; male gonads at the bottom from the neoparatype USNM E16151). D. I. fuscus (Ludwig, 1875) (mouth membrane from MCZ HOL-742; anterior cloaca from MBMLP- If212; posterior cloaca and gonads from MCZ HOL-743). E. I. macroparentheses (Clark, 1922) (mouth membrane, anterior and posterior cloaca from USNM E47524; gonads from the holotype MCZ HOL- 921). Photos by G. Borrero. Scale bars = 100 µm." ;
|
||
fabio:hasRepresentation <https://zenodo.org/record/13710659/files/figure.png> ;
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a fabio:Figure .
|
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<http://dx.doi.org/10.5281/zenodo.13710681>
|
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dc:description "Fig. 19. Preserved specimens of Isostichopus fuscus (Ludwig, 1875) from Acapulco, Mexico and of Selenka’s syntype of I. badionotus (Selenka, 1867) (MCZ HOL-743, 160–175 mm long). A. Dorsal view of three specimens. B. Ossicles from dorsal papillae. C. Large tables with circular spire from the anterior cloaca. Photos by G. Borrero. Scale bars: A = 30 mm; B–C = 100 µm." ;
|
||
fabio:hasRepresentation <https://zenodo.org/record/13710681/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.13710683>
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dc:description "Fig. 20. Isostichopus fuscus (Ludwig, 1875) ossicles (specimen USNM 1682794-Ta213, 155 mm long). A. Thin C-shaped rods, tables, perforated plates and large, curved rods from dorsal body wall and papillae. B. Thin C-shaped rods, tables, perforated plates, large, curved rods and end plate (fragment) from ventral body wall and tube feet. C. Rods and tables from tentacles. D. Thin C-shaped rods from longitudinal muscles. E. Rods bifurcated from the cloaca. F. Large tables with a circular spire well developed in the anterior cloaca. G. Tables from respiratory trees. H. Rods in cross shape, simple rods, and C-shaped rods in the intestine. Photos by G. Borrero." ;
|
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fabio:hasRepresentation <https://zenodo.org/record/13710683/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.13710649>
|
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dc:description "Fig. 5. Geographic distribution of species and subspecies of Isostichopus Deichmann, 1958. A. I. badionotus (Selenka, 1867) (gray circles), I. maculatus phoenius (Clark, 1922) (red squares) and I. maculatus maculatus (Greeff, 1882) (blue circles). B. I. fuscus (Ludwig, 1875) (green circles) and I. macroparentheses (Clark, 1922) (orange circles). Locations for I. badionotus and I. fuscus were constructed based on observation records in Global Biodiversity Information Facility data and from museum specimens. Locations forI. maculatus phoenius, I. maculatusmaculatus andI. macroparentheses were constructed based only on confirmed localities of collected or preserved museum specimens." ;
|
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.13710685>
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dc:description "Fig. 21. Color patterns and morphological variation of Isostichopus fuscus (Ludwig, 1875) (DNA sequences and detailed information of some specimens are indicated in Table 1, see Photo ID column for correspondence). A–C, D–E-bottom, F-top, G–H. Specimens with “Reticulated” pattern from Taboguilla, Panama (Ta210) (A), Perlas Islands, Panama (B), North Chocó, Colombia (C, D–E-bottom dorsal and ventral view, F-top, G–H). D–E-top, I, K–L. Specimens with “Chocolate brown and reddish” pattern from North Choco, Colombia (I, D–E-top-dorsal and ventral view, K-small specimen completely red), and Perlas Islands, Panamá (L, small specimen completely red). J. Specimen with “Chocolate brown and stains” pattern from Mexico. F-bottom. Specimen with “Chocolate brown uniform” pattern from North Chocó, Colombia. M. Preserved juvenile from North Choco, Colombia (original coloration not recorded). N. Juvenile from Mexico, “chocolate brown uniform with yellow papillae” pattern. Photos: F–I by L. Chasqui; L by A. Calderón; J, N by C. Sánchez; A–E, K, M by G. Borrero. Scale bars: B, M = 10 mm; D–E = 30 mm; C, K, N = 20 mm." ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.13710647>
|
||
dc:description "Fig. 4. Comparison of the calcareous rings of species and subspecies of Isostichopus Deichmann, 1958. A. I. badionotus (Selenka, 1867). B. I. maculatus phoenius (Clark, 1922) (A–B showing calcareous rings from specimens of different sizes). C. I. maculatus maculatus (Greeff, 1882). D. I. fuscus (Ludwig, 1875). E. I. macroparentheses (Clark, 1922). Dimensions of the individuals from which each ring was obtained are shown next to their museum catalog number. Abbreviations: ip = interradial plate; rp = radial plate. Scale bar = 4 mm." ;
|
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.13710657>
|
||
dc:description "Fig. 10. Light microscope photographs of the same specimens as in Fig. 9 (see the length (L) for correspondence), comparing ossicle size and shape from dorsal papillae and dorsal body wall from small to large specimens from each of the species and subspecies of Isostichopus Deichmann, 1958. A. I. badionotus (Selenka, 1867). B. I. maculatus phoenius (Clark, 1922). C. I. maculatus maculatus (Greeff, 1882). D. I. fuscus (Ludwig, 1875). E. I. macroparentheses (Clark, 1922). Photos by G. Borrero. Scale bars = 100 µm." ;
|
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.13710655>
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dc:description "Fig. 9. Box-plots comparing ossicle size from dorsal papillae from small to large specimens(along x axis) from each of the species and subspecies of Isostichopus Deichmann, 1958. A. Dorsal papillae: C-shaped ossicle length. B. Dorsal papillae: table height. C. Dorsal papillae: table disc diameter. Photos of the ossicles of the same specimens are presented in Fig. 10. Specimens IDs: I. badionotus (Selenka, 1867) L = 40 mm, USNM E11783; L = 130 mm, USNM 1659462-BT48; L = 195 mm, USNM 1659454- BT111; L = 230 mm, USNM 1659447–BT116; I. maculatus phoenius (Clark, 1922) L = 25 mm, INV EQU4565; L = 90 mm, USNM 1659481-Ga224; L = 125, USNM 1659472-BT192; L = 185, USNM 1659479-BT53; I. maculatus maculatus (Greeff, 1882) L = 55 mm, ASI1; L = 110 mm, ASI4; L = 150 mm, CV1; I. fuscus (Ludwig, 1875) L = 40 mm, INV EQU4229; L = 115 mm, INV EQU4324; L = 55 mm, MBMLP-If212; L = 180 mm, INV EQU4323; I. macroparentheses (Clark, 1922) L = 20 mm, USNM 1659484-Be99; L = 40 mm, USNM 1659485-Be107; L = 65 mm, MCZ HOL-1214; L = 135 mm, USNM E47524." ;
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