246 lines
24 KiB
XML
246 lines
24 KiB
XML
<document id="044E8A4A689E479267CF278D954F3FBF" ID-CLB-Dataset="7136" ID-DOI="10.1099/ijsem.0.004107" ID-GBIF-Dataset="c650e745-85a1-48ca-b29a-b1714f644bae" ID-Zenodo-Dep="4730536" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.taxonomicNames_approvedBy="felipe" checkinTime="1619726709930" checkinUser="valdenar" docAuthor="Zheng, Jinshui, Wittouck, Stijn, Salvetti, Elisa, Franz, Charles M. A. P., Harris, Hugh M. B., Mattarelli, Paola, O’Toole, Paul W., Pot, Bruno, Vandamme, Peter, Walter, Jens, Watanabe, Koichi, Wuyts, Sander, Felis, Giovanna E., Gänzle, Michael G. & Lebeer, Sarah" docDate="2020" docId="03A8D903D212025CFFD0F9FF5427318D" docLanguage="en" docName="Int.J.Syst.Evol.Microbiol.70.2782-2858.pdf" docOrigin="International Journal of Systematic and Evolutionary Microbiology 70" docStyle="DocumentStyle:C64F0A4F4C66F6FC2AD4ED89351C6242.3:IntJSystEvolMicrobiol.2017-.journal_article" docStyleId="C64F0A4F4C66F6FC2AD4ED89351C6242" docStyleName="IntJSystEvolMicrobiol.2017-.journal_article" docStyleVersion="3" docTitle="Lacticaseibacillus casei Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer 2020, COMB. NOV." docType="treatment" docVersion="11" lastPageNumber="2811" masterDocId="FF91A17BD20F0241FFA9FFF45102331E" masterDocTitle="A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae" masterLastPageNumber="2858" masterPageNumber="2782" pageNumber="2811" updateTime="1698938060401" updateUser="ExternalLinkService" zenodo-license-document="CC-BY-4.0">
|
||
<mods:mods id="E301434F6AF61B10F6A6D3C27DAAF71D" xmlns:mods="http://www.loc.gov/mods/v3">
|
||
<mods:titleInfo id="725E83EF50C8887ADF19A99BB64DDBC8">
|
||
<mods:title id="BED795B505CDA4FC86D6127AED5F5B6A">A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae</mods:title>
|
||
</mods:titleInfo>
|
||
<mods:name id="84F95D43CF6927C0D2CAAA5ACF8F67E4" type="personal">
|
||
<mods:role id="36D97D6D785F03F0BC1033AC302483A9">
|
||
<mods:roleTerm id="A482C35D06914CDCB629523C141C7D65">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="2AD21E3C181DBF987467B5BAF94F594E">Zheng, Jinshui</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="AB2A73309674A597AFC20EC317D182E9" type="personal">
|
||
<mods:role id="95D734A4E743E42CC978E39A29084621">
|
||
<mods:roleTerm id="002FC21E244AF4EC8A171BE1753CBAF0">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="16B63C2C2C7C3351C7FBE506858BC301">Wittouck, Stijn</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="3AC9A62491FD643173426338DD8A7503" type="personal">
|
||
<mods:role id="C2A7E5BC81E09BC960C07D108D0355A4">
|
||
<mods:roleTerm id="A1D36EB6C3B2AF883090F2463F8B0A56">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="37282F2CD84130DBD823D81EACF4C664">Salvetti, Elisa</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="1D1E9F35101F868AAB10886BF2C48EF5" type="personal">
|
||
<mods:role id="200EACEA2BD01A8A38F20A466C3C9704">
|
||
<mods:roleTerm id="6D809C0EB8B6BA3FFA14FDDE139B606D">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="A6CCD6CFE710378E8FC91F0B54A30387">Franz, Charles M. A. P.</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="C0951B7C06AB115450A284787D93FB03" type="personal">
|
||
<mods:role id="7FEF691031236A06F3E2DB8AA90A15FB">
|
||
<mods:roleTerm id="F5328AF0E9C4DB9A72E4037310A2BE64">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="8BCB2A56A46BC800A25893FC35209658">Harris, Hugh M. B.</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="258EDA1A36049DC698800F002E918AE5" type="personal">
|
||
<mods:role id="3F5DA7FC2A7828B5B0DDB5A6C3B4DF59">
|
||
<mods:roleTerm id="4C1E5C93DD286E75E0EC3CC99D7B6039">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="4A61B96FFA52C7931CE8E62B089BE158">Mattarelli, Paola</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="1825B336C0F6DD73BEB2D6523C5966B9" type="personal">
|
||
<mods:role id="2F9FDBB1F615F6063C50D93D0B24DC37">
|
||
<mods:roleTerm id="46F9EE13FB667E4CFEA92A4036A00C25">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="C464B5FFE4DB1506D4663DBC5E279947">O’Toole, Paul W.</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="16FA5805B9936F175026FD87A3FD1CF2" type="personal">
|
||
<mods:role id="CC3C58A246054F6E5C74632FB2A52E2D">
|
||
<mods:roleTerm id="A9409CF9069274907318DD76C11D0313">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="25CF06DABACCCE0B30C078A691F791DC">Pot, Bruno</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="66FC3BC6230B846B712053A92E87934E" type="personal">
|
||
<mods:role id="3E059CF743305E7EBAF785FD4C9D8C7E">
|
||
<mods:roleTerm id="BF8874BB46AFD6F7869C3CE6E2921210">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="BE4CE38DCB34C5D4D50F808A6A93CB74">Vandamme, Peter</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="D43425C5E885D8F9A0A0C3D1BB6B58C7" type="personal">
|
||
<mods:role id="AB1F60D2C57437F0EBA51C272A47224D">
|
||
<mods:roleTerm id="E6C14540EB0296D194EBC090DE2B44BE">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="67BD791CD008ACA9A4C039A1DB1641C7">Walter, Jens</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="9F90EC6348FD79E878CB7E4B5007D882" type="personal">
|
||
<mods:role id="540EEF89A0C10BBD10161391206A6DD1">
|
||
<mods:roleTerm id="8086225D20727157BBF627957695B8C4">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="F9C817C4B5B86878A5BC8A936A63FB94">Watanabe, Koichi</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="19A9D90E381BDED7EC585AB76C1BEDC5" type="personal">
|
||
<mods:role id="FDBD49F18732C62D985231E53118A080">
|
||
<mods:roleTerm id="D464CC5F5CDEE0FC47D4A6DE54FF1242">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="4A6169BF37D11E673F97FD63BF67DB59">Wuyts, Sander</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="6A91354C340CD3A680F8F32E234158E7" type="personal">
|
||
<mods:role id="2888919A0026A1E9A081B1F29A64004C">
|
||
<mods:roleTerm id="5E2481845F791FC45BAB10B9750F1142">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="3B513305D28D6D6857B77947D24CB104">Felis, Giovanna E.</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="069B80B81060B34F06C2F85E7B6A9541" type="personal">
|
||
<mods:role id="94493D13F45D2B106B903A13CA1CC9C9">
|
||
<mods:roleTerm id="0915B8846624BA92579C758115DFC82A">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="54C31A0C897559C9CA7B959442B30CA0">Gänzle, Michael G.</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="5026D00635E073B24C9B3EB490579022" type="personal">
|
||
<mods:role id="915F952D4F0F33437ADEAB8BB688136A">
|
||
<mods:roleTerm id="D858441017C8357A7BAABD3AAFF6F32F">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="6CCCF98F02F769C5C16B059752F5520E">Lebeer, Sarah</mods:namePart>
|
||
</mods:name>
|
||
<mods:typeOfResource id="E665D505D769026C51A00475FC13C0C2">text</mods:typeOfResource>
|
||
<mods:relatedItem id="9EB8FB39340736BDC2E64AEE1C1C31A9" type="host">
|
||
<mods:titleInfo id="7C265F54A3AF411647A8BA357040F0C6">
|
||
<mods:title id="DBF73B4B7902731966609D7F08558DB4">International Journal of Systematic and Evolutionary Microbiology</mods:title>
|
||
</mods:titleInfo>
|
||
<mods:part id="212D0F9E9BC872A77392F0E8046B2130">
|
||
<mods:date id="D4DD78514ABDB2617CE8C17B20391C40">2020</mods:date>
|
||
<mods:detail id="541E237895DD00D3181F34B5B80CDB16" type="pubDate">
|
||
<mods:number id="BECDBBC2FE9E999573AB7038F03F8A2B">2020-04-15</mods:number>
|
||
</mods:detail>
|
||
<mods:detail id="39B9A7DA3C937BEC1A3D4C740D6D8847" type="volume">
|
||
<mods:number id="9DFB15939E70EACF15917785D8E5545A">70</mods:number>
|
||
</mods:detail>
|
||
<mods:extent id="5E8FE627E06FE24B803A6F8F2203426A" unit="page">
|
||
<mods:start id="C462B7009A87FEAC214386520A7EA6F9">2782</mods:start>
|
||
<mods:end id="A07A70E39A01C9F55FE6F1C2D0DCE49F">2858</mods:end>
|
||
</mods:extent>
|
||
</mods:part>
|
||
</mods:relatedItem>
|
||
<mods:classification id="3AED7D679340A473B8ABC7D03982CBC2">journal article</mods:classification>
|
||
<mods:identifier id="94BD010999EE858CE0AFA5C88C2208A4" type="CLB-Dataset">7136</mods:identifier>
|
||
<mods:identifier id="09DA3E59B6C9A208EEEBADE1587CF03D" type="DOI">10.1099/ijsem.0.004107</mods:identifier>
|
||
<mods:identifier id="FFDE9504C3C69D7D36AF77E0DAAED880" type="GBIF-Dataset">c650e745-85a1-48ca-b29a-b1714f644bae</mods:identifier>
|
||
<mods:identifier id="954665BF704A4C9AF9C08BF8E48B4D16" type="Zenodo-Dep">4730536</mods:identifier>
|
||
</mods:mods>
|
||
<treatment id="03A8D903D212025CFFD0F9FF5427318D" ID-DOI="http://doi.org/10.5281/zenodo.4728484" ID-GBIF-Taxon="181761744" ID-Zenodo-Dep="4728484" LSID="urn:lsid:plazi:treatment:03A8D903D212025CFFD0F9FF5427318D" httpUri="http://treatment.plazi.org/id/03A8D903D212025CFFD0F9FF5427318D" lastPageNumber="2811" pageId="29" pageNumber="2811">
|
||
<subSubSection id="C31B3B9ED212025CFFD0F9FF507B3553" pageId="29" pageNumber="2811" type="nomenclature">
|
||
<paragraph id="8BBE6815D212025CFFD0F9FF507B3553" blockId="29.[121,717,1547,1650]" pageId="29" pageNumber="2811">
|
||
<heading id="D0F6DF79D212025CFFD0F9FF507B3553" allCaps="true" bold="true" fontSize="12" level="3" pageId="29" pageNumber="2811" reason="0">
|
||
<emphasis id="B975B407D212025CFFD0F9FF507B3553" bold="true" pageId="29" pageNumber="2811">
|
||
DESCRIPTIONOF
|
||
<taxonomicName id="4C011396D212025CFEDBF9FF51CE3553" authority="CASEI" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" class="Bacilli" family="Lactobacillaceae" genus="Lacticaseibacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="29" pageNumber="2811" phylum="Firmicutes" rank="species" species="casei" status="comb. nov.">
|
||
<emphasis id="B975B407D212025CFEDBF9FF51CE3553" bold="true" italics="true" pageId="29" pageNumber="2811">LACTICASEIBACILLUS CASEI</emphasis>
|
||
</taxonomicName>
|
||
<taxonomicNameLabel id="A246097CD212025CFF7DF9C4507B3553" box="[212,377,1584,1613]" pageId="29" pageNumber="2811" rank="species">COMB. NOV.</taxonomicNameLabel>
|
||
</emphasis>
|
||
</heading>
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="C31B3B9ED212025CFFD0F9AE55C13295" pageId="29" pageNumber="2811" type="discussion">
|
||
<paragraph id="8BBE6815D212025CFFD0F9AE53CF356C" blockId="29.[121,717,1547,1650]" box="[121,717,1626,1650]" pageId="29" pageNumber="2811">
|
||
<taxonomicName id="4C011396D212025CFFD0F9AE5064356F" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="2020" box="[121,358,1626,1650]" class="Bacilli" family="Lactobacillaceae" genus="Lacticaseibacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="29" pageNumber="2811" phylum="Firmicutes" rank="species" species="casei">
|
||
<emphasis id="B975B407D212025CFFD0F9AE5064356F" box="[121,358,1626,1650]" italics="true" pageId="29" pageNumber="2811">Lacticaseibacillus casei</emphasis>
|
||
</taxonomicName>
|
||
(ca’se.i. L. gen. n.
|
||
<taxonomicName id="4C011396D212025CFD8DF9AE5354356F" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="2020" box="[548,598,1626,1649]" class="Bacilli" family="Lactobacillaceae" genus="Lacticaseibacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="29" pageNumber="2811" phylum="Firmicutes" rank="species" species="casei">
|
||
<emphasis id="B975B407D212025CFD8DF9AE5354356F" box="[548,598,1626,1649]" italics="true" pageId="29" pageNumber="2811">casei</emphasis>
|
||
</taxonomicName>
|
||
of cheese).
|
||
</paragraph>
|
||
<paragraph id="8BBE6815D212025CFFD0F97C503B35C3" blockId="29.[120,760,1671,1757]" pageId="29" pageNumber="2811">
|
||
Basonym:
|
||
<taxonomicName id="4C011396D212025CFF41F97C50AA3581" box="[232,424,1672,1696]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="29" pageNumber="2811" phylum="Firmicutes" rank="species" species="casei">
|
||
<emphasis id="B975B407D212025CFF41F97C50AA3581" box="[232,424,1672,1696]" italics="true" pageId="29" pageNumber="2811">Lactobacillus casei</emphasis>
|
||
</taxonomicName>
|
||
(Orla Jensen 1916, Hansen and Lessel 1971, 71 (Approved Lists) (
|
||
<taxonomicName id="4C011396D212025CFE7DF95253B835A0" box="[468,698,1702,1726]" class="Bacilli" family="Lactobacillaceae" genus="Streptobacterium" kingdom="Bacteria" order="Lactobacillales" pageId="29" pageNumber="2811" phylum="Firmicutes" rank="species" species="casei">
|
||
<emphasis id="B975B407D212025CFE7DF95253B835A0" box="[468,698,1702,1726]" italics="true" pageId="29" pageNumber="2811">Streptobacterium casei</emphasis>
|
||
</taxonomicName>
|
||
Orla- Jensen 1919, 166).
|
||
</paragraph>
|
||
<paragraph id="8BBE6815D212025CFFD0F907501F34BA" blockId="29.[121,762,1779,1956]" pageId="29" pageNumber="2811">
|
||
The species includes strains previously classified as
|
||
<taxonomicName id="4C011396D212025CFD32F90751E73437" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="29" pageNumber="2811" phylum="Firmicutes" rank="species" species="zeae">
|
||
<emphasis id="B975B407D212025CFD32F90751E73437" italics="true" pageId="29" pageNumber="2811">Lactobacillus zeae</emphasis>
|
||
</taxonomicName>
|
||
[
|
||
<bibRefCitation id="EF9015E4D212025CFF5CF8E550203437" author="Tindall B." box="[245,290,1809,1833]" pageId="29" pageNumber="2811" pagination="1764 - 1765" refId="ref66243" refString="155. Tindall B. The type strain of Lactobacillus casei is ATCC 393, ATCC 334 cannot serve as the type because it represents a different taxon, the name Lactobacillus paracasei and its subspecies names are not rejected and the revival of the name " Lactobacillus zeae " contravenes Rules 51 b (1) and (2) of the International Code of Nomenclature of Bacteria. Opinion 82. Int J Syst Evol Microbiol 2008; 58: 1764 - 1765." type="journal article" year="2008">155</bibRefCitation>
|
||
]. Original characteristics of
|
||
<taxonomicName id="4C011396D212025CFDF1F8E653AA3437" box="[600,680,1810,1833]" class="Bacilli" family="Lactobacillaceae" genus="Streptobacterium" kingdom="Bacteria" order="Lactobacillales" pageId="29" pageNumber="2811" phylum="Firmicutes" rank="species" species="casei">
|
||
<emphasis id="B975B407D212025CFDF1F8E653AA3437" box="[600,680,1810,1833]" italics="true" pageId="29" pageNumber="2811">L. casei</emphasis>
|
||
</taxonomicName>
|
||
strains are provided by [
|
||
<bibRefCitation id="EF9015E4D212025CFE9AF8C450413456" author="Orla-Jensen S." box="[307,323,1840,1864]" journalOrPublisher="Copenhagen: Andr Fred HOst and Son" pageId="29" pageNumber="2811" refId="ref59648" refString="2. Orla-Jensen S. The lactic acid bacteria. Copenhagen: Andr Fred HOst and Son; 1919." title="The lactic acid bacteria" type="book" year="1919">2</bibRefCitation>
|
||
,
|
||
<bibRefCitation id="EF9015E4D212025CFEE6F8C450753456" author="Orla-Jensen S." box="[335,375,1840,1864]" pageId="29" pageNumber="2811" refId="ref66329" refString="156. Orla-Jensen S. Maelkeri-Bakteriologi 1916." type="book" year="1916">156</bibRefCitation>
|
||
,
|
||
<bibRefCitation id="EF9015E4D212025CFE2AF8C450AC3456" author="Hansen PA & Lessel EF & Int J" box="[387,430,1840,1864]" pageId="29" pageNumber="2811" pagination="69 - 71" refId="ref66337" refString="157. Hansen PA, Lessel EF. Lactobacillus casei (Orla-Jensen) comb. nov. Int J Syst Bacteriol 1971; 21: 69 - 71." type="journal article" year="1971">157</bibRefCitation>
|
||
].
|
||
<taxonomicName id="4C011396D212025CFE69F8C5530D3456" box="[448,527,1841,1864]" class="Bacilli" family="Lactobacillaceae" genus="Streptobacterium" kingdom="Bacteria" order="Lactobacillales" pageId="29" pageNumber="2811" phylum="Firmicutes" rank="species" species="casei">
|
||
<emphasis id="B975B407D212025CFE69F8C5530D3456" box="[448,527,1841,1864]" italics="true" pageId="29" pageNumber="2811">L. casei</emphasis>
|
||
</taxonomicName>
|
||
is differentiated from most other lactobacilli by catalase activity [
|
||
<bibRefCitation id="EF9015E4D212025CFDEDF8BB53663479" author="Wuyts S & Wittouck S & De Boeck I & Allonsius CN & Pasolli E" box="[580,612,1871,1895]" pageId="29" pageNumber="2811" refId="ref61324" refString="47. Wuyts S, Wittouck S, De Boeck I, Allonsius CN, Pasolli E et al. Large-scale phylogenomics of the Lactobacillus casei group highlights taxonomic inconsistencies and reveals novel cladeassociated features. mSystems 2017; 2: e 00061 - 17." type="journal volume" year="2017">47</bibRefCitation>
|
||
]. The genome size of the type strain is 2.83 Mbp. The mol% G+C content of DNAis 46.5.
|
||
</paragraph>
|
||
<paragraph id="8BBE6815D212025CFC95FF4355C13295" blockId="29.[826,1468,183,395]" pageId="29" pageNumber="2811">
|
||
Isolates wereobtained from diversesources including chinese traditional pickle, infant faeces, corn liquor, oat silage, commercial dietary supplements, sputum, nasopharynx [
|
||
<bibRefCitation id="EF9015E4D212025CFCEAFEE152613233" author="Wuyts S & Wittouck S & De Boeck I & Allonsius CN & Pasolli E" box="[835,867,277,301]" pageId="29" pageNumber="2811" refId="ref61324" refString="47. Wuyts S, Wittouck S, De Boeck I, Allonsius CN, Pasolli E et al. Large-scale phylogenomics of the Lactobacillus casei group highlights taxonomic inconsistencies and reveals novel cladeassociated features. mSystems 2017; 2: e 00061 - 17." type="journal volume" year="2017">47</bibRefCitation>
|
||
]. Information on the lifestyle of
|
||
<taxonomicName id="4C011396D212025CFB63FEE154183232" box="[1226,1306,277,300]" class="Bacilli" family="Lactobacillaceae" genus="Streptobacterium" kingdom="Bacteria" order="Lactobacillales" pageId="29" pageNumber="2811" phylum="Firmicutes" rank="species" species="casei">
|
||
<emphasis id="B975B407D212025CFB63FEE154183232" box="[1226,1306,277,300]" italics="true" pageId="29" pageNumber="2811">L. casei</emphasis>
|
||
</taxonomicName>
|
||
is counded by the unclear taxonomy over the past decades; most genomes of designated as
|
||
<taxonomicName id="4C011396D212025CFC41FEA055313275" box="[1000,1075,340,363]" class="Bacilli" family="Lactobacillaceae" genus="Streptobacterium" kingdom="Bacteria" order="Lactobacillales" pageId="29" pageNumber="2811" phylum="Firmicutes" rank="species" species="casei">
|
||
<emphasis id="B975B407D212025CFC41FEA055313275" box="[1000,1075,340,363]" italics="true" pageId="29" pageNumber="2811">L. casei</emphasis>
|
||
</taxonomicName>
|
||
in the NCBI database should be classified as
|
||
<taxonomicName id="4C011396D212025CFC3FFE8755113294" box="[918,1043,371,394]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="29" pageNumber="2811" phylum="Firmicutes" rank="species" species="paracasei">
|
||
<emphasis id="B975B407D212025CFC3FFE8755113294" box="[918,1043,371,394]" italics="true" pageId="29" pageNumber="2811">L. paracasei</emphasis>
|
||
</taxonomicName>
|
||
instead [
|
||
<bibRefCitation id="EF9015E4D212025CFBDBFE87558D3295" author="Wittouck S & Wuyts S & Meehan CJ & van Noort V & Lebeer S." box="[1138,1167,371,395]" journalOrPublisher="mSystems" pageId="29" pageNumber="2811" part="4" refId="ref59914" refString="10. Wittouck S, Wuyts S, Meehan CJ, van Noort V, Lebeer S. A genome-based species taxonomy of the Lactobacillus Genus Complex. mSystems 2019; 4: e 00264 - 19." title="A genome-based species taxonomy of the Lactobacillus Genus Complex" type="journal volume" year="2019">10</bibRefCitation>
|
||
,
|
||
<bibRefCitation id="EF9015E4D212025CFB33FE8755BA3295" author="Wuyts S & Wittouck S & De Boeck I & Allonsius CN & Pasolli E" box="[1178,1208,371,395]" pageId="29" pageNumber="2811" refId="ref61324" refString="47. Wuyts S, Wittouck S, De Boeck I, Allonsius CN, Pasolli E et al. Large-scale phylogenomics of the Lactobacillus casei group highlights taxonomic inconsistencies and reveals novel cladeassociated features. mSystems 2017; 2: e 00061 - 17." type="journal volume" year="2017">47</bibRefCitation>
|
||
].
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="C31B3B9ED212025CFC95FE555427318D" pageId="29" pageNumber="2811" type="description">
|
||
<paragraph id="8BBE6815D212025CFC95FE5555EC3128" blockId="29.[828,1467,417,567]" pageId="29" pageNumber="2811">
|
||
Thetypestrainis 03 [7, IAM 12473, Orland L-323, R.P. Tittsler 303]
|
||
<superScript id="7C74C55DD212025CFC3DFE4B529F32D3" attach="none" box="[916,925,447,461]" fontSize="6" pageId="29" pageNumber="2811">T</superScript>
|
||
=ATCC 393
|
||
<superScript id="7C74C55DD212025CFBB2FE4B552632D3" attach="none" box="[1051,1060,447,461]" fontSize="6" pageId="29" pageNumber="2811">T</superScript>
|
||
=BCRC 10697
|
||
<superScript id="7C74C55DD212025CFB13FE4B55C132D3" attach="none" box="[1210,1219,447,461]" fontSize="6" pageId="29" pageNumber="2811">T</superScript>
|
||
=CCUG 21451
|
||
<superScript id="7C74C55DD212025CFAC9FE4B546B32D3" attach="none" box="[1376,1385,447,461]" fontSize="6" pageId="29" pageNumber="2811">T</superScript>
|
||
=CECT 475
|
||
<superScript id="7C74C55DD212025CFCCAFE2A526F32F2" attach="none" box="[867,877,478,492]" fontSize="6" pageId="29" pageNumber="2811">T</superScript>
|
||
=CIP 103137
|
||
<superScript id="7C74C55DD212025CFBA5FE2A551432F2" attach="right" box="[1036,1046,478,492]" fontSize="6" pageId="29" pageNumber="2811">T</superScript>
|
||
=DSM 20011
|
||
<superScript id="7C74C55DD212025CFB1FFE2A55C232F2" attach="right" box="[1206,1216,478,492]" fontSize="6" pageId="29" pageNumber="2811">T</superScript>
|
||
=IAM 12473
|
||
<superScript id="7C74C55DD212025CFAF3FE2A546632F2" attach="none" box="[1370,1380,478,492]" fontSize="6" pageId="29" pageNumber="2811">T</superScript>
|
||
=NBRC 15883
|
||
<superScript id="7C74C55DD212025CFCD4FE0A52853112" attach="none" box="[893,903,510,524]" fontSize="6" pageId="29" pageNumber="2811">T</superScript>
|
||
=JCM 1134
|
||
<superScript id="7C74C55DD212025CFBA7FE0A551A3112" attach="none" box="[1038,1048,510,524]" fontSize="6" pageId="29" pageNumber="2811">T</superScript>
|
||
=KCTC 3109
|
||
<superScript id="7C74C55DD212025CFB1BFE0A55BE3112" attach="right" box="[1202,1212,510,524]" fontSize="6" pageId="29" pageNumber="2811">T</superScript>
|
||
=LMG 6904
|
||
<superScript id="7C74C55DD212025CFAE0FE0A54513112" attach="none" box="[1353,1363,510,524]" fontSize="6" pageId="29" pageNumber="2811">T</superScript>
|
||
=NCIMB 11970
|
||
<superScript id="7C74C55DD212025CFCD5FDE952843135" attach="none" box="[892,902,541,555]" fontSize="6" pageId="29" pageNumber="2811">T</superScript>
|
||
=NCIMB 11970
|
||
<superScript id="7C74C55DD212025CFB98FDE955393135" attach="none" box="[1073,1083,541,555]" fontSize="6" pageId="29" pageNumber="2811">T</superScript>
|
||
=NRRL B-1922
|
||
<superScript id="7C74C55DD212025CFB76FDE955E53135" attach="none" box="[1247,1255,541,555]" fontSize="6" pageId="29" pageNumber="2811">T</superScript>
|
||
.
|
||
</paragraph>
|
||
<paragraph id="8BBE6815D212025CFC95FDB95478317B" blockId="29.[828,1402,589,613]" box="[828,1402,589,613]" pageId="29" pageNumber="2811">Genome sequence accession number: BALS00000000.</paragraph>
|
||
<paragraph id="8BBE6815D212025CFC95FD8F5427318D" blockId="29.[828,1317,635,660]" box="[828,1317,635,660]" pageId="29" pageNumber="2811">
|
||
16S rRNA gene accession number:
|
||
<accessionNumber id="9452F5F6D212025CFB18FD8F5423318D" box="[1201,1313,635,659]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/AF469172" pageId="29" pageNumber="2811">AF469172</accessionNumber>
|
||
.
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |