259 lines
26 KiB
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259 lines
26 KiB
XML
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<mods:title id="19347D2D3825DC23EE750BA43BC29F5E">A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae</mods:title>
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<mods:namePart id="41D851DB048E2BB6BF0CBD8643950E2C">Zheng, Jinshui</mods:namePart>
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<mods:namePart id="563C8306E02FB18AC93D0AA9D896B2D1">Pot, Bruno</mods:namePart>
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<mods:namePart id="FCBD1F5B6A9112024D19D56E9D2DFAB5">Walter, Jens</mods:namePart>
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<mods:namePart id="A1D0A9DC12E87951BE37D43A0D4F0DEF">Watanabe, Koichi</mods:namePart>
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<mods:namePart id="52E75A3FDD72DE5460EE2BA87F3FFBDC">Wuyts, Sander</mods:namePart>
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<mods:namePart id="6A815965616E7EE20F6A95CDFAC0E7BF">Felis, Giovanna E.</mods:namePart>
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<mods:namePart id="0F532AD7A7F1AEE9212C250EA3AEDB7A">Gänzle, Michael G.</mods:namePart>
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<mods:namePart id="C20C545AE4789A90D2E78B5D29AF4261">Lebeer, Sarah</mods:namePart>
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<mods:title id="F417DA8CDE76656D4766866FF8E690FB">International Journal of Systematic and Evolutionary Microbiology</mods:title>
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<mods:date id="7191E50EA7C4810948C3AECD25E01D5D">2020</mods:date>
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<treatment id="0389878AFFCD2131D94EFB45FDCC65C4" ID-DOI="http://doi.org/10.5281/zenodo.6310116" ID-Zenodo-Dep="6310116" LSID="urn:lsid:plazi:treatment:0389878AFFCD2131D94EFB45FDCC65C4" httpUri="http://treatment.plazi.org/id/0389878AFFCD2131D94EFB45FDCC65C4" lastPageNumber="2846" pageId="64" pageNumber="2846">
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<subSubSection id="C33A6517FFCD2131D94EFB45FE7F6772" pageId="64" pageNumber="2846" type="nomenclature">
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<paragraph id="8B9F369CFFCD2131D94EFB45FE7F6772" blockId="64.[121,762,1235,1955]" pageId="64" pageNumber="2846">
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<heading id="D0D781F0FFCD2131D94EFB45FE7F6772" allCaps="true" bold="true" fontSize="12" level="2" pageId="64" pageNumber="2846" reason="3">
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<emphasis id="B954EA8EFFCD2131D94EFB45FE7F6772" bold="true" pageId="64" pageNumber="2846">
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DESCRIPTION OF
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<taxonomicName id="4C204D1FFFCD2131D845FB45FE8C6772" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="2020" class="Bacilli" family="Lactobacillaceae" genus="Lentilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="64" pageNumber="2846" phylum="Firmicutes" rank="species" species="parakefiri" status="comb. nov.">
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<emphasis id="B954EA8EFFCD2131D845FB45FE8C6772" bold="true" italics="true" pageId="64" pageNumber="2846">LENTILACTOBACILLUS PARAKEFIRI</emphasis>
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</taxonomicName>
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<taxonomicNameLabel id="A26757F5FFCD2131D81CFB6EFE7F6772" box="[299,464,1272,1301]" pageId="64" pageNumber="2846" rank="species">COMB. NOV.</taxonomicNameLabel>
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</emphasis>
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</heading>
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</paragraph>
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</subSubSection>
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<subSubSection id="C33A6517FFCD2131D94EFAB4FEFF67F0" pageId="64" pageNumber="2846" type="etymology">
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<paragraph id="8B9F369CFFCD2131D94EFAB4FEFF67F0" blockId="64.[121,762,1235,1955]" pageId="64" pageNumber="2846">
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<taxonomicName id="4C204D1FFFCD2131D94EFAB4FE05675D" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="2020" box="[121,426,1314,1338]" class="Bacilli" family="Lactobacillaceae" genus="Lentilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="64" pageNumber="2846" phylum="Firmicutes" rank="species" species="parakefiri">
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<emphasis id="B954EA8EFFCD2131D94EFAB4FE05675D" box="[121,426,1314,1338]" italics="true" pageId="64" pageNumber="2846">Lentilactobacillus parakefiri</emphasis>
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</taxonomicName>
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(pa.ra.ke'fir.i. Gr. pref.
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<emphasis id="B954EA8EFFCD2131DBF0FAB5FD57675D" box="[711,760,1315,1338]" italics="true" pageId="64" pageNumber="2846">para</emphasis>
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beside; N.L. gen. n.
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<taxonomicName id="4C204D1FFFCD2131D862FAD7FE23673E" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="2020" box="[341,396,1345,1369]" class="Bacilli" family="Lactobacillaceae" genus="Lentilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="64" pageNumber="2846" phylum="Firmicutes" rank="species" species="kefiri">
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<emphasis id="B954EA8EFFCD2131D862FAD7FE23673E" box="[341,396,1345,1369]" italics="true" pageId="64" pageNumber="2846">kefiri</emphasis>
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</taxonomicName>
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a species epithet; N.L. masc. adj.
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||
<taxonomicName id="4C204D1FFFCD2131D94CFAF6FF4E671F" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="2020" box="[123,225,1376,1400]" class="Bacilli" family="Lactobacillaceae" genus="Lentilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="64" pageNumber="2846" phylum="Firmicutes" rank="species" species="parakefiri">
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<emphasis id="B954EA8EFFCD2131D94CFAF6FF4E671F" box="[123,225,1376,1400]" italics="true" pageId="64" pageNumber="2846">parakefiri</emphasis>
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</taxonomicName>
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beside
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<taxonomicName id="4C204D1FFFCD2131D806FAF7FE2C671F" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="2020" box="[305,387,1376,1400]" class="Bacilli" family="Lactobacillaceae" genus="Lentilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="64" pageNumber="2846" phylum="Firmicutes" rank="species" species="kefiri">
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<emphasis id="B954EA8EFFCD2131D806FAF7FE2C671F" box="[305,387,1376,1400]" italics="true" pageId="64" pageNumber="2846">L. kefiri</emphasis>
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</taxonomicName>
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, referring to the close relationship with this organism).
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</paragraph>
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</subSubSection>
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<subSubSection id="C33A6517FFCD2131D94EFA38FDAC6407" pageId="64" pageNumber="2846" type="reference_group">
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<paragraph id="8B9F369CFFCD2131D94EFA38FDAC6407" blockId="64.[121,762,1235,1955]" pageId="64" pageNumber="2846">
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Basonym:
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||
<taxonomicName id="4C204D1FFFCD2131D9C5FA3BFD5C67A2" ID-CoL="3RSTF" authority="Takizawa et al. 1994" authorityName="Takizawa" authorityYear="1994" box="[242,755,1453,1477]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="64" pageNumber="2846" phylum="Firmicutes" rank="species" species="parakefiri">
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<emphasis id="B954EA8EFFCD2131D9C5FA3BFE5B67A2" box="[242,500,1453,1477]" italics="true" pageId="64" pageNumber="2846">Lactobacillus parakefiri</emphasis>
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Takizawa
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<emphasis id="B954EA8EFFCD2131DB43FA38FD1F67A2" box="[628,688,1453,1477]" italics="true" pageId="64" pageNumber="2846">et al.</emphasis>
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1994
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</taxonomicName>
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, 438
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<superScript id="7C559BD4FFCD2131D997FA5DFF1D67BE" attach="none" box="[160,178,1483,1497]" fontSize="6" pageId="64" pageNumber="2846">VP</superScript>
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. The classification of
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||
<taxonomicName id="4C204D1FFFCD2131D896FA5BFD8A6783" ID-CoL="3RSTF" authority="(Takizawa et al. 1994)" box="[417,549,1484,1508]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="64" pageNumber="2846" phylum="Firmicutes" rank="species" species="parakefiri">
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<emphasis id="B954EA8EFFCD2131D896FA5BFD8A6783" box="[417,549,1484,1508]" italics="true" pageId="64" pageNumber="2846">L. parakefiri</emphasis>
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</taxonomicName>
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as separate species was disputed as the first published genome sequence of the
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<typeStatus id="549B883EFFCD2131D94CF99DFF056444" box="[123,170,1547,1571]" pageId="64" pageNumber="2846">type</typeStatus>
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||
strain was virtually identical to
|
||
<taxonomicName id="4C204D1FFFCD2131DB22F99DFDC56445" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="2020" box="[533,618,1546,1570]" class="Bacilli" family="Lactobacillaceae" genus="Lentilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="64" pageNumber="2846" phylum="Firmicutes" rank="species" species="kefiri">
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||
<emphasis id="B954EA8EFFCD2131DB22F99DFDC56445" box="[533,618,1546,1570]" italics="true" pageId="64" pageNumber="2846">L. kefiri</emphasis>
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||
</taxonomicName>
|
||
[
|
||
<bibRefCitation id="EFB14B6DFFCD2131DB4CF99CFD366445" author="Zheng J & Ruan L & Sun M & Ganzle M." box="[635,665,1546,1570]" pageId="64" pageNumber="2846" pagination="7233 - 7243" refId="ref60299" refString="14. Zheng J, Ruan L, Sun M, Ganzle M. A genomic view of lactobacilli and pediococci demonstrates that phylogeny matches ecology and physiology. Appl Environ Microbiol 2015; 81: 7233 - 7243." type="journal article" year="2015">14</bibRefCitation>
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||
,
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||
<bibRefCitation id="EFB14B6DFFCD2131DB90F99CFD6C6445" author="Sun Z & Harris HMB & McCann A & Guo C & Argimon S" box="[679,707,1546,1570]" pageId="64" pageNumber="2846" pagination="8322" refId="ref60381" refString="16. Sun Z, Harris HMB, McCann A, Guo C, Argimon S et al. Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera. Nat Commun 2015; 6: 8322." type="journal article" year="2015">16</bibRefCitation>
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||
] but re-sequencing of the
|
||
<typeStatus id="549B883EFFCD2131D857F9BFFE216426" box="[352,398,1577,1601]" pageId="64" pageNumber="2846">type</typeStatus>
|
||
strain supported classification of
|
||
<taxonomicName id="4C204D1FFFCD2131D94CF9DFFF546407" ID-CoL="3RSTF" authority="(Takizawa et al. 1994)" box="[123,251,1608,1632]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="64" pageNumber="2846" phylum="Firmicutes" rank="species" species="parakefiri">
|
||
<emphasis id="B954EA8EFFCD2131D94CF9DFFF546407" box="[123,251,1608,1632]" italics="true" pageId="64" pageNumber="2846">L. parakefiri</emphasis>
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||
</taxonomicName>
|
||
as separate species [
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||
<bibRefCitation id="EFB14B6DFFCD2131D8E6F9DEFE526407" author="Tanizawa Y & Kobayashi H & Kaminuma E & Sakamoto M & Ohkuma M" box="[465,509,1608,1632]" pageId="64" pageNumber="2846" pagination="129 - 134" refId="ref74527" refString="336. Tanizawa Y, Kobayashi H, Kaminuma E, Sakamoto M, Ohkuma M et al. Genomic characterization reconfirms the taxonomic status of Lactobacillus parakefiri. Biosci Microbiota Food Health 2017; 36: 129 - 134." type="journal article" year="2017">336</bibRefCitation>
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]
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||
</paragraph>
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||
</subSubSection>
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<subSubSection id="C33A6517FFCD2131D94EF9E0FE23649D" pageId="64" pageNumber="2846" type="description">
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||
<paragraph id="8B9F369CFFCD2131D94EF9E0FEB264AB" blockId="64.[121,762,1235,1955]" pageId="64" pageNumber="2846">
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||
Growth is observed at 15 but not at 45 °C [
|
||
<bibRefCitation id="EFB14B6DFFCD2131DB0EF9E0FDCA64E9" author="Takizawa S & Kojima S & Tamura S & Fujinaga S & Benno Y" box="[569,613,1654,1678]" pageId="64" pageNumber="2846" pagination="435 - 439" refId="ref63967" refString="101. Takizawa S, Kojima S, Tamura S, Fujinaga S, Benno Y et al. Lactobacillus kefirgranum sp. nov. and Lactobacillus parakefir sp. nov., two new species from kefir grains. Int J Syst Bacteriol 1994; 44: 435 - 439." type="journal article" year="1994">101</bibRefCitation>
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||
]. The genome size of the
|
||
<typeStatus id="549B883EFFCD2131D9D8F903FEB264CA" box="[239,285,1685,1709]" pageId="64" pageNumber="2846">type</typeStatus>
|
||
strain is 4.91 Mbp. The mol% G+C content of DNA is 42.6.
|
||
</paragraph>
|
||
<paragraph id="8B9F369CFFCD2131D94EF974FE23649D" blockId="64.[121,762,1235,1955]" box="[121,396,1762,1786]" pageId="64" pageNumber="2846">Isolated from kefir grains.</paragraph>
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||
</subSubSection>
|
||
<subSubSection id="C33A6517FFCD2131D94EF886FDFB6521" pageId="64" pageNumber="2846" type="materials_examined">
|
||
<paragraph id="8B9F369CFFCD2131D94EF886FDFB6521" blockId="64.[121,762,1235,1955]" pageId="64" pageNumber="2846">
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||
<materialsCitation id="3B483CC1FFCD2131D94EF886FDE1655B" accessionNumber="DSM 10551, LMG 15133" collectionCode="T, DSM, LMG" pageId="64" pageNumber="2846" specimenCode="GCL 1731, ATCC 51648, CCUG 39468, CIP 104242" specimenCount="1" typeStatus="holotype">
|
||
The
|
||
<typeStatus id="549B883EFFCD2131D990F886FF7A654F" box="[167,213,1808,1832]" pageId="64" pageNumber="2846">type</typeStatus>
|
||
strain is
|
||
<specimenCode id="DB869EE7FFCD2131D802F886FE0E654F" box="[309,417,1808,1832]" collectionCode="GCL" country="Israel" httpUri="http://grbio.org/cool/3eq8-igan" name="Central Laboratories" pageId="64" pageNumber="2846">GCL 1731</specimenCode>
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<superScript id="7C559BD4FFCD2131D896F899FE04657A" attach="none" box="[417,427,1807,1821]" fontSize="6" pageId="64" pageNumber="2846">
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<collectionCode id="ED31AE59FFCD2131D896F899FE04657A" box="[417,427,1807,1821]" name="Tavera, Department of Geology and Geophysics" pageId="64" pageNumber="2846">T</collectionCode>
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</superScript>
|
||
=
|
||
<specimenCode id="DB869EE7FFCD2131D88FF886FDEA654F" box="[440,581,1808,1832]" collectionCode="ATCC" country="USA" httpUri="http://grbio.org/cool/b0k1-wg01" name="American Type Culture Collection" pageId="64" pageNumber="2846">ATCC 51648</specimenCode>
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||
<superScript id="7C559BD4FFCD2131DB72F899FDE0657A" attach="none" box="[581,591,1807,1821]" fontSize="6" pageId="64" pageNumber="2846">
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<collectionCode id="ED31AE59FFCD2131DB72F899FDE0657A" box="[581,591,1807,1821]" name="Tavera, Department of Geology and Geophysics" pageId="64" pageNumber="2846">T</collectionCode>
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||
</superScript>
|
||
=
|
||
<specimenCode id="DB869EE7FFCD2131DB6BF886FD41654F" box="[604,750,1808,1832]" collectionCode="CCUG" country="Sweden" httpUri="http://grbio.org/cool/td22-j49f" name="Culture Collection, University of Goteborg, Department of Clinical Bacteriology" pageId="64" pageNumber="2846">CCUG 39468</specimenCode>
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<superScript id="7C559BD4FFCD2131DBD9F899FD57657A" attach="none" box="[750,760,1807,1821]" fontSize="6" pageId="64" pageNumber="2846">
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<collectionCode id="ED31AE59FFCD2131DBD9F899FD57657A" box="[750,760,1807,1821]" name="Tavera, Department of Geology and Geophysics" pageId="64" pageNumber="2846">T</collectionCode>
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||
</superScript>
|
||
=
|
||
<specimenCode id="DB869EE7FFCD2131D9B9F8B9FEA46520" box="[142,267,1839,1863]" collectionCode="CIP" country="Colombia" httpUri="http://grbio.org/cool/kny8-abms" name="Centro de Investigaciones Pesqueras" pageId="64" pageNumber="2846">CIP 104242</specimenCode>
|
||
<superScript id="7C559BD4FFCD2131D83CF8B8FEBA655B" attach="none" box="[267,277,1838,1852]" fontSize="6" pageId="64" pageNumber="2846">
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<collectionCode id="ED31AE59FFCD2131D83CF8B8FEBA655B" box="[267,277,1838,1852]" name="Tavera, Department of Geology and Geophysics" pageId="64" pageNumber="2846">T</collectionCode>
|
||
</superScript>
|
||
=
|
||
<collectionCode id="ED31AE59FFCD2131D814F8B9FEF36520" box="[291,348,1839,1863]" country="Germany" httpUri="http://grbio.org/cool/4644-42cg" name="Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH" pageId="64" pageNumber="2846">DSM</collectionCode>
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||
10551
|
||
<superScript id="7C559BD4FFCD2131D895F8B8FE03655B" attach="left" box="[418,428,1838,1852]" fontSize="6" pageId="64" pageNumber="2846">
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<collectionCode id="ED31AE59FFCD2131D895F8B8FE03655B" box="[418,428,1838,1852]" name="Tavera, Department of Geology and Geophysics" pageId="64" pageNumber="2846">T</collectionCode>
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</superScript>
|
||
=
|
||
<collectionCode id="ED31AE59FFCD2131D8F0F8B9FDAF6520" box="[455,512,1839,1863]" country="Belgium" httpUri="http://grbio.org/cool/0fkg-rcci" name="Belgian Coordinated Collections of Microorganisms/ LMG Bacteria Collection" pageId="64" pageNumber="2846">LMG</collectionCode>
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||
15133
|
||
<superScript id="7C559BD4FFCD2131DB71F8B8FDE1655B" attach="none" box="[582,590,1838,1852]" fontSize="6" pageId="64" pageNumber="2846">
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<collectionCode id="ED31AE59FFCD2131DB71F8B8FDE1655B" box="[582,590,1838,1852]" name="Tavera, Department of Geology and Geophysics" pageId="64" pageNumber="2846">T</collectionCode>
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||
</superScript>
|
||
</materialsCitation>
|
||
.
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="C33A6517FFCD2131D94EF8CBFD6E6512" box="[121,705,1885,1909]" pageId="64" pageNumber="2846" type="description">
|
||
<paragraph id="8B9F369CFFCD2131D94EF8CBFD6E6512" blockId="64.[121,762,1235,1955]" box="[121,705,1885,1909]" pageId="64" pageNumber="2846">Genome sequence accession number: AZEN00000000.</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="C33A6517FFCD2131D94EF81DFDCC65C4" box="[121,611,1931,1955]" pageId="64" pageNumber="2846" type="materials_examined">
|
||
<paragraph id="8B9F369CFFCD2131D94EF81DFDCC65C4" blockId="64.[121,762,1235,1955]" box="[121,611,1931,1955]" pageId="64" pageNumber="2846">
|
||
16S rRNA gene accession number:
|
||
<accessionNumber id="9473AB7FFFCD2131D8D9F81DFDF065C4" box="[494,607,1931,1955]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/AY026750" pageId="64" pageNumber="2846">AY026750</accessionNumber>
|
||
.
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |