treatments-xml/data/03/89/87/0389878AFFBD2140DA0BFA6DFE6E61BC.xml
2024-06-21 12:22:17 +02:00

251 lines
29 KiB
XML
Raw Blame History

This file contains ambiguous Unicode characters

This file contains Unicode characters that might be confused with other characters. If you think that this is intentional, you can safely ignore this warning. Use the Escape button to reveal them.

<document id="25191B4000D4F5508F4C16526A60D887" ID-DOI="10.1099/ijsem.0.004107" ID-ISSN="1466-5034" ID-Zenodo-Dep="10114954" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.taxonomicNames_approvedBy="felipe" checkinTime="1644597203828" checkinUser="felipe" docAuthor="Zheng, Jinshui, Wittouck, Stijn, Salvetti, Elisa, Franz, Charles M. A. P., Harris, Hugh M. B., Mattarelli, Paola, OToole, Paul W., Pot, Bruno, Vandamme, Peter, Walter, Jens, Watanabe, Koichi, Wuyts, Sander, Felis, Giovanna E., Gänzle, Michael G. &amp; Lebeer, Sarah" docDate="2020" docId="0389878AFFBD2140DA0BFA6DFE6E61BC" docLanguage="en" docName="IntJSystEvolMicrobiol.70.4.2782-2858.pdf" docOrigin="International Journal of Systematic and Evolutionary Microbiology 70 (4)" docSource="http://dx.doi.org/10.1099/ijsem.0.004107" docStyle="DocumentStyle:C64F0A4F4C66F6FC2AD4ED89351C6242.3:IntJSystEvolMicrobiol.2017-.journal_article" docStyleId="C64F0A4F4C66F6FC2AD4ED89351C6242" docStyleName="IntJSystEvolMicrobiol.2017-.journal_article" docStyleVersion="3" docTitle="Limosilactobacillus Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer 2020, GEN. NOV." docType="treatment" docVersion="7" lastPageNumber="2831" masterDocId="FFB0FFF2FF8D2171D937FF96FFAF6267" masterDocTitle="A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae" masterLastPageNumber="2858" masterPageNumber="2782" pageNumber="2830" updateTime="1700041747501" updateUser="ExternalLinkService">
<mods:mods id="FBBA89BB29F016BE82F9D59979E42BFA" xmlns:mods="http://www.loc.gov/mods/v3">
<mods:titleInfo id="CE9D0750A09BB97003F3180189BB99C0">
<mods:title id="D6A468A0334B1B8008E4D7912EF978E4">A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae</mods:title>
</mods:titleInfo>
<mods:name id="078C85A42FEA0062D76B475E19E39ED4" type="personal">
<mods:role id="6C7FD58D50529AFAA581E99266764B6B">
<mods:roleTerm id="4D57789C9E668E9999A272256ECC6F7B">Author</mods:roleTerm>
</mods:role>
<mods:namePart id="F14792952749FBEC489BA8639E002BA9">Zheng, Jinshui</mods:namePart>
</mods:name>
<mods:name id="E9F1D1A6F58F4A600A1FC6D3269694A4" type="personal">
<mods:role id="7034DEDD3285419DBF838E352B89A0F7">
<mods:roleTerm id="82273E827EC411FCF24F5D82DF73A40D">Author</mods:roleTerm>
</mods:role>
<mods:namePart id="2008D7F38ABE1E28826E26385993E131">Wittouck, Stijn</mods:namePart>
</mods:name>
<mods:name id="3C27F5DEB80DB354763F016564859080" type="personal">
<mods:role id="B00510ED148F60B0E0C37F3156F82738">
<mods:roleTerm id="CF2B204650AD4A003CB387D31AC6D3CD">Author</mods:roleTerm>
</mods:role>
<mods:namePart id="FE887C6A6A51A48F0D3DCA3CE32BE5A4">Salvetti, Elisa</mods:namePart>
</mods:name>
<mods:name id="0D409A65A67188D20FA241E7B6F74778" type="personal">
<mods:role id="EA4806531B2A667ACB03528CE00F4AAB">
<mods:roleTerm id="B8390D9E7CCBB3D0D61855B2858CC11B">Author</mods:roleTerm>
</mods:role>
<mods:namePart id="2F347A891865E491BC963B4F3245CA39">Franz, Charles M. A. P.</mods:namePart>
</mods:name>
<mods:name id="B2C29BF3E6A64FA4087D0C05CDA2C775" type="personal">
<mods:role id="8000954F6A156E6B95A7B09D98FEA33F">
<mods:roleTerm id="DE999C499C0BCB8000395FCD17F4F536">Author</mods:roleTerm>
</mods:role>
<mods:namePart id="4D475A9983ED0A17B0D8787E665B9538">Harris, Hugh M. B.</mods:namePart>
</mods:name>
<mods:name id="38E923F63480AA73C3C75C0162DADE7A" type="personal">
<mods:role id="EB611127D36A9305CA53110541473ADA">
<mods:roleTerm id="05CC5AABFF2EF137302115288C468DFD">Author</mods:roleTerm>
</mods:role>
<mods:namePart id="07CD7E75603AB7F3E054C87D59D7BF07">Mattarelli, Paola</mods:namePart>
</mods:name>
<mods:name id="1BECD5AD71D0DD6FA0994B6C7AC7EEF7" type="personal">
<mods:role id="9F4F408097EA7CC37A8D7CABB933E0E5">
<mods:roleTerm id="A14E7765675C2B5B7610024ECE94B8BE">Author</mods:roleTerm>
</mods:role>
<mods:namePart id="E5A462629DD42548D971EE2495FE7C35">OToole, Paul W.</mods:namePart>
</mods:name>
<mods:name id="CA3C9042A77A6EFE1E929ADD2393B10B" type="personal">
<mods:role id="CFE388BAB854AE09CE63D4B5D6440AD7">
<mods:roleTerm id="6B573DF06FB545BB7E5B3D922D6D59FE">Author</mods:roleTerm>
</mods:role>
<mods:namePart id="327E52EFB44437F33DCC21E427E9D483">Pot, Bruno</mods:namePart>
</mods:name>
<mods:name id="6FC745E5F77E6563DB38A0B0369E60D2" type="personal">
<mods:role id="A3EACE4757B50C078C0B1E8058A4C1BC">
<mods:roleTerm id="849AE83A27E4CDB8AB527845CB8F6243">Author</mods:roleTerm>
</mods:role>
<mods:namePart id="94E517CB3CEE1BF5765A5047D67306ED">Vandamme, Peter</mods:namePart>
</mods:name>
<mods:name id="8A3A67E40016A166E85A1CBA9AB0D9AF" type="personal">
<mods:role id="4F688A07AEB824AB1883549F819D1CC3">
<mods:roleTerm id="9D0E45385FAE6B6EC81B34F3D2994FE1">Author</mods:roleTerm>
</mods:role>
<mods:namePart id="CD38139D5EDDD7DE208B1D65392EBAB5">Walter, Jens</mods:namePart>
</mods:name>
<mods:name id="C64167C62FBBD603FB71710A872C1E97" type="personal">
<mods:role id="971C93A30FFBB18371343CCECB03C8C5">
<mods:roleTerm id="A5A8B489238C17E0D49DA299E6BD5DBD">Author</mods:roleTerm>
</mods:role>
<mods:namePart id="1DB558E48B955E39B46C2D5F30507D6F">Watanabe, Koichi</mods:namePart>
</mods:name>
<mods:name id="A5CECD688A439D0EF606BF9C483ECF57" type="personal">
<mods:role id="3CFF20E47D62D7AD9E98C2F33FAE1CD0">
<mods:roleTerm id="8B24F70CEA31B0216A599CE35B70DF20">Author</mods:roleTerm>
</mods:role>
<mods:namePart id="DB7333CB0CEB9BEFE3C931DB3DAC0E05">Wuyts, Sander</mods:namePart>
</mods:name>
<mods:name id="6F56620F5EEA28E4470E6D1904130AE1" type="personal">
<mods:role id="D5C97A0F4E65A4BD1FD55912F4E53BB2">
<mods:roleTerm id="79C25477F32865803A525163A9204879">Author</mods:roleTerm>
</mods:role>
<mods:namePart id="A867A907E3D103BB324E3C7E3E9DF4C9">Felis, Giovanna E.</mods:namePart>
</mods:name>
<mods:name id="E615F08B6F6A130FA552888D01053E96" type="personal">
<mods:role id="876FE33F676448AACF64DC4D24D7C280">
<mods:roleTerm id="2A0A95F7565D8AAC23ED09CFA3E3652C">Author</mods:roleTerm>
</mods:role>
<mods:namePart id="D66B69AF782A168B46A8D66306FEE879">Gänzle, Michael G.</mods:namePart>
</mods:name>
<mods:name id="4B511A4B0807C7F1A2CB9823ECD26290" type="personal">
<mods:role id="30A93ABD81F98CB7C0B37ED96A068423">
<mods:roleTerm id="B69055C744B43DE764D39B35F3293A5A">Author</mods:roleTerm>
</mods:role>
<mods:namePart id="7335BC16999C68EF74AD5C975D17804A">Lebeer, Sarah</mods:namePart>
</mods:name>
<mods:typeOfResource id="2899C17C88A90F72990A4ADEA4C922EA">text</mods:typeOfResource>
<mods:relatedItem id="7973CC5D064B075B96C336F99BBDD1E1" type="host">
<mods:titleInfo id="7AB123C7F999702861D3FA3A4A6F16AD">
<mods:title id="7D64D9A85162A58200762193D694B2F6">International Journal of Systematic and Evolutionary Microbiology</mods:title>
</mods:titleInfo>
<mods:part id="630B881BDEE532A56E958F51FF03760D">
<mods:date id="4C8CD9D8F55E8D2FD3D032FBCB83D0E7">2020</mods:date>
<mods:detail id="7A5AFF1DDD94C94988C47452E2F24F1E" type="pubDate">
<mods:number id="C27C41BF051E0C539A84D3B61671A2C0">2020-04-01</mods:number>
</mods:detail>
<mods:detail id="1792E41A71183E75B54D8F61148B1FF7" type="volume">
<mods:number id="39FE582164675ED3A1ECD22EE3885CD3">70</mods:number>
</mods:detail>
<mods:detail id="D2C6A4CA59D7E931CB690DFBB65E28C3" type="issue">
<mods:number id="E5E981806AACEF4F94E7A8C0EBF23682">4</mods:number>
</mods:detail>
<mods:extent id="C02B486FFA71E34FA1CE10F38C9CA287" unit="page">
<mods:start id="429861C5091C93DC94A6A2DF661EF73D">2782</mods:start>
<mods:end id="B4433343DCD485FD334D85F6FA836F97">2858</mods:end>
</mods:extent>
</mods:part>
</mods:relatedItem>
<mods:location id="1102F0B6CCF2ABAF5157CE49D290FFB6">
<mods:url id="2226E336D80871CA5BCEBBB068C81AC6">http://dx.doi.org/10.1099/ijsem.0.004107</mods:url>
</mods:location>
<mods:classification id="8C78DE43570842BFE3ADE551CE264444">journal article</mods:classification>
<mods:identifier id="64F4A30E8FCDE7280EAE7D805E053A45" type="DOI">10.1099/ijsem.0.004107</mods:identifier>
<mods:identifier id="CC0AE3A821B2A05B685D9F3D52EFED81" type="ISSN">1466-5034</mods:identifier>
<mods:identifier id="856870C846EF74532787C3BCD2318B34" type="Zenodo-Dep">10114954</mods:identifier>
</mods:mods>
<treatment id="0389878AFFBD2140DA0BFA6DFE6E61BC" ID-DOI="http://doi.org/10.5281/zenodo.6309945" ID-Zenodo-Dep="6309945" LSID="urn:lsid:plazi:treatment:0389878AFFBD2140DA0BFA6DFE6E61BC" httpUri="http://treatment.plazi.org/id/0389878AFFBD2140DA0BFA6DFE6E61BC" lastPageId="49" lastPageNumber="2831" pageId="48" pageNumber="2830">
<subSubSection id="C33A6517FFBD2141DA0BFA6DFC66645A" pageId="48" pageNumber="2830" type="nomenclature">
<paragraph id="8B9F369CFFBD2141DA0BFA6DFC66645A" blockId="48.[828,1473,1531,1956]" pageId="48" pageNumber="2830">
<heading id="D0D781F0FFBD2141DA0BFA6DFC66645A" allCaps="true" bold="true" fontSize="12" level="2" pageId="48" pageNumber="2830" reason="3">
<emphasis id="B954EA8EFFBD2141DA0BFA6DFC66645A" bold="true" pageId="48" pageNumber="2830">
DESCRIPTION OF
<taxonomicName id="4C204D1FFFBD2141DD02FA6DFAD6647F" authority="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer, 2020" authorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" authorityYear="2020" box="[1077,1401,1531,1560]" class="Bacilli" family="Lactobacillaceae" genus="Limosilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="48" pageNumber="2830" phylum="Firmicutes" rank="genus" status="gen. nov.">
<emphasis id="B954EA8EFFBD2141DD02FA6DFAD6647F" bold="true" box="[1077,1401,1531,1560]" italics="true" pageId="48" pageNumber="2830">LIMOSILACTOBACILLUS</emphasis>
</taxonomicName>
<taxonomicNameLabel id="A26757F5FFBD2141DA0BF9B6FC66645A" box="[828,969,1568,1597]" pageId="48" pageNumber="2830" rank="genus">GEN. NOV.</taxonomicNameLabel>
</emphasis>
</heading>
</paragraph>
</subSubSection>
<subSubSection id="C33A6517FFBD2141DA0BF9DCFB4464BA" pageId="48" pageNumber="2830" type="etymology">
<paragraph id="8B9F369CFFBD2141DA0BF9DCFB4464BA" blockId="48.[828,1473,1531,1956]" pageId="48" pageNumber="2830">
<taxonomicName id="4C204D1FFFBD2141DA0BF9DCFBA86405" authorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" authorityYear="2020" box="[828,1031,1610,1634]" class="Bacilli" family="Lactobacillaceae" genus="Limosilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="48" pageNumber="2830" phylum="Firmicutes" rank="genus">
<emphasis id="B954EA8EFFBD2141DA0BF9DCFBA86405" box="[828,1031,1610,1634]" italics="true" pageId="48" pageNumber="2830">Limosilactobacillus</emphasis>
</taxonomicName>
(Li.mo.si.lac.to.ba.cil'lus. L. masc. adj.
<emphasis id="B954EA8EFFBD2141DA0BF9FFFC2364E6" box="[828,908,1641,1665]" italics="true" pageId="48" pageNumber="2830">limosus</emphasis>
, slimy, referring to the property of most strains in the genus to produce exopolysaccharides from sucrose; N.L. masc. n.
<taxonomicName id="4C204D1FFFBD2141DAACF930FB8B64D9" authorityName="Beijerinck" authorityYear="1901" box="[923,1060,1702,1726]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="48" pageNumber="2830" phylum="Firmicutes" rank="genus">
<emphasis id="B954EA8EFFBD2141DAACF930FB8B64D9" box="[923,1060,1702,1726]" italics="true" pageId="48" pageNumber="2830">Lactobacillus</emphasis>
</taxonomicName>
a bacterial genus name; N.L. masc. n.
<emphasis id="B954EA8EFFBD2141DA0BF953FBA664BA" box="[828,1033,1733,1757]" italics="true" pageId="48" pageNumber="2830">
<taxonomicName id="4C204D1FFFBD2141DA0BF953FBAA64BA" authorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" authorityYear="2020" box="[828,1029,1733,1757]" class="Bacilli" family="Lactobacillaceae" genus="Limosilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="48" pageNumber="2830" phylum="Firmicutes" rank="genus">Limosilactobacillus</taxonomicName>
,
</emphasis>
a slimy lactobacillus.
</paragraph>
</subSubSection>
<subSubSection id="C33A6517FFBD2140DA0BF965FE9D6166" lastPageId="49" lastPageNumber="2831" pageId="48" pageNumber="2830" type="description">
<paragraph id="8B9F369CFFBD2140DA0BF965FE9D6166" blockId="48.[828,1473,1531,1956]" lastBlockId="49.[120,762,182,987]" lastPageId="49" lastPageNumber="2831" pageId="48" pageNumber="2830">
Gram-positive, rod- or coccoid-shaped, catalase-negative, heterofermentative, and anaerobic or aerotolerant. Growth is observed at 37 °C and, for most species, at 45 °C but not at 15 °C. Strains in the genus have very small genomes ranging from 1.6 Mbp for
<taxonomicName id="4C204D1FFFBD2141DACFF8F8FB3D65E2" authorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" authorityYear="2020" baseAuthorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" baseAuthorityYear="2020" box="[1016,1170,1902,1925]" class="Bacilli" family="Lactobacillaceae" genus="Limosilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="48" pageNumber="2830" phylum="Firmicutes" rank="species" species="equigenerosi">
<emphasis id="B954EA8EFFBD2141DACFF8F8FB3D65E2" box="[1016,1170,1902,1925]" italics="true" pageId="48" pageNumber="2830">L. equigenerosi</emphasis>
</taxonomicName>
to 2.25 Mbp for
<emphasis id="B954EA8EFFBD2141DC76F8F8FA1565E2" box="[1345,1466,1902,1925]" italics="true" pageId="48" pageNumber="2830">
<taxonomicName id="4C204D1FFFBD2141DC76F8F8FA1A65E2" authorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" authorityYear="2020" baseAuthorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" baseAuthorityYear="2020" box="[1345,1461,1902,1925]" class="Bacilli" family="Lactobacillaceae" genus="Limosilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="48" pageNumber="2830" phylum="Firmicutes" rank="species" species="mucosae">L. mucosae</taxonomicName>
;
</emphasis>
the mol % G+C content as calculated from whole genome shotgun sequences ranges from 38.6.1 to 53.4. In comparison to other heterofermentative lactobacilli,
<taxonomicName id="4C204D1FFFBC2140DB19FF40FD596289" box="[558,758,214,238]" class="Bacilli" family="Lactobacillaceae" genus="Limosilactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="49" pageNumber="2831" phylum="Firmicutes" rank="genus">
<emphasis id="B954EA8EFFBC2140DB19FF40FD596289" box="[558,758,214,238]" italics="true" pageId="49" pageNumber="2831">Limosilactobacillus</emphasis>
</taxonomicName>
species ferment a relatively broad spectrum of carbohydrates, however, several species do not ferment glucose. Acid resistance is typically mediated by expression of urease, glutaminase, glutamate decarboxylase and / or arginine deiminase activities [
<bibRefCitation id="EFB14B6DFFBC2140D9DFFEE4FEB963ED" author="Teixeira JS &amp; Seeras A &amp; Sanchez-Maldonado AF &amp; Zhang C" box="[232,278,370,394]" pageId="49" pageNumber="2831" pagination="172 - 180" refId="ref70945" refString="252. Teixeira JS, Seeras A, Sanchez-Maldonado AF, Zhang C, Su MS- W et al. Glutamine, glutamate, and arginine-based acid resistance in Lactobacillus reuteri. Food Microbiol 2014; 42: 172 - 180." type="journal article" year="2014">252</bibRefCitation>
]. With the exception of
<taxonomicName id="4C204D1FFFBC2140DB2AFEE5FD0163ED" authorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" authorityYear="2020" baseAuthorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" baseAuthorityYear="2020" box="[541,686,370,394]" class="Bacilli" family="Lactobacillaceae" genus="Limosilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="49" pageNumber="2831" phylum="Firmicutes" rank="species" species="fermentum">
<emphasis id="B954EA8EFFBC2140DB2AFEE5FD0163ED" box="[541,686,370,394]" italics="true" pageId="49" pageNumber="2831">L. fermentum</emphasis>
</taxonomicName>
and
<taxonomicName id="4C204D1FFFBC2140DBD2FEE5FF4063CE" authorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" authorityYear="2020" baseAuthorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" baseAuthorityYear="2020" class="Bacilli" family="Lactobacillaceae" genus="Limosilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="49" pageNumber="2831" phylum="Firmicutes" rank="species" species="secaliphilus">
<emphasis id="B954EA8EFFBC2140DBD2FEE5FF4063CE" italics="true" pageId="49" pageNumber="2831">L. secaliphilus</emphasis>
</taxonomicName>
, strains in the genus were isolated from intestinal habitats, or were shown experimentally to have adapted to the intestine of vertebrate animals.
<taxonomicName id="4C204D1FFFBC2140D8D0FE46FD57638F" authorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" authorityYear="2020" baseAuthorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" baseAuthorityYear="2020" box="[487,760,464,488]" class="Bacilli" family="Lactobacillaceae" genus="Limosilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="49" pageNumber="2831" phylum="Firmicutes" rank="species" species="reuteri">
<emphasis id="B954EA8EFFBC2140D8D0FE46FD57638F" box="[487,760,464,488]" italics="true" pageId="49" pageNumber="2831">Limosilactobacillus reuteri</emphasis>
</taxonomicName>
and other strains in the genus produce exopolysaccharides from sucrose to support biofilm formation on non-secretory epithelia in the upper intestinal tract [
<bibRefCitation id="EFB14B6DFFBC2140DB06FDB8FDE06021" author="Zheng J &amp; Ruan L &amp; Sun M &amp; Ganzle M." box="[561,591,558,582]" pageId="49" pageNumber="2831" pagination="7233 - 7243" refId="ref60299" refString="14. Zheng J, Ruan L, Sun M, Ganzle M. A genomic view of lactobacilli and pediococci demonstrates that phylogeny matches ecology and physiology. Appl Environ Microbiol 2015; 81: 7233 - 7243." type="journal article" year="2015">14</bibRefCitation>
,
<bibRefCitation id="EFB14B6DFFBC2140DB69FDB8FD246021" author="Tieking M &amp; Kaditzky S &amp; Valcheva R &amp; Korakli M &amp; Vogel RF" box="[606,651,558,582]" pageId="49" pageNumber="2831" pagination="692 - 702" refId="ref70987" refString="253. Tieking M, Kaditzky S, Valcheva R, Korakli M, Vogel RF et al. Extracellular homopolysaccharides and oligosaccharides from intestinal lactobacilli. J Appl Microbiol 2005; 99: 692 - 702." type="journal article" year="2005">253</bibRefCitation>
]. In their natural habitat,
<taxonomicName id="4C204D1FFFBC2140D81CFDDBFE596002" box="[299,502,589,613]" class="Bacilli" family="Lactobacillaceae" genus="Limosilactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="49" pageNumber="2831" phylum="Firmicutes" rank="genus">
<emphasis id="B954EA8EFFBC2140D81CFDDBFE596002" box="[299,502,589,613]" italics="true" pageId="49" pageNumber="2831">Limosilactobacillus</emphasis>
</taxonomicName>
species generally form stable associations with
<taxonomicName id="4C204D1FFFBC2140D8B2FDFAFDE860E3" box="[389,583,620,644]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="49" pageNumber="2831" phylum="Firmicutes" rank="species" species="undetermined">
<emphasis id="B954EA8EFFBC2140D8B2FDFAFDBF60E3" box="[389,528,620,644]" italics="true" pageId="49" pageNumber="2831">Lactobacillus</emphasis>
spp.
</taxonomicName>
; the same association is observed in food fermentations with
<emphasis id="B954EA8EFFBC2140DB40FD1DFF7F60A4" italics="true" pageId="49" pageNumber="2831">
<taxonomicName id="4C204D1FFFBC2140DB40FD1DFF6360A4" authorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" authorityYear="2020" class="Bacilli" family="Lactobacillaceae" genus="Limosilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="49" pageNumber="2831" phylum="Firmicutes" rank="genus">Limosilactobacillus</taxonomicName>
.
</emphasis>
<taxonomicName id="4C204D1FFFBC2140D9EFFD3DFE0E60A4" box="[216,417,683,707]" class="Bacilli" family="Lactobacillaceae" genus="Limosilactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="49" pageNumber="2831" phylum="Firmicutes" rank="genus">
<emphasis id="B954EA8EFFBC2140D9EFFD3DFE0E60A4" box="[216,417,683,707]" italics="true" pageId="49" pageNumber="2831">Limosilactobacillus</emphasis>
</taxonomicName>
species., particularly
<taxonomicName id="4C204D1FFFBC2140DBB9FD3DFD5E60A5" authorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" authorityYear="2020" baseAuthorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" baseAuthorityYear="2020" box="[654,753,683,706]" class="Bacilli" family="Lactobacillaceae" genus="Limosilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="49" pageNumber="2831" phylum="Firmicutes" rank="species" species="reuteri">
<emphasis id="B954EA8EFFBC2140DBB9FD3DFD5E60A5" box="[654,753,683,706]" italics="true" pageId="49" pageNumber="2831">L. reuteri</emphasis>
</taxonomicName>
, are produced commercially for use as starter culture and as probiotic culture.
</paragraph>
</subSubSection>
<subSubSection id="C33A6517FFBC2140D94EFC8EFF026109" pageId="49" pageNumber="2831" type="discussion">
<paragraph id="8B9F369CFFBC2140D94EFC8EFF026109" blockId="49.[120,762,182,987]" pageId="49" pageNumber="2831">
A phylogenetic tree on the basis of 16S rRNA genes of all species in the genus
<taxonomicName id="4C204D1FFFBC2140D867FCA1FDB86128" authorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" authorityYear="2020" box="[336,535,823,847]" class="Bacilli" family="Lactobacillaceae" genus="Limosilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="49" pageNumber="2831" phylum="Firmicutes" rank="genus">
<emphasis id="B954EA8EFFBC2140D867FCA1FDB86128" box="[336,535,823,847]" italics="true" pageId="49" pageNumber="2831">Limosilactobacillus</emphasis>
</taxonomicName>
is provided in
<figureCitation id="131B2A19FFBC2140DB84FCA1FF066109" captionStart="Fig" captionStartId="7.[185,216,1617,1636]" captionTargetBox="[264,1323,181,1565]" captionTargetId="figure-17@7.[264,1323,181,1565]" captionTargetPageId="7" captionText="Fig. 6. Gene family presence/absence patterns in Lactobacillaceae and Leuconostocaceae. Each column represents a gene family presence/absence pattern in species of Lactobacillaceae and Leuconostoaceae, where presence is indicated with a dot. The absolute number of gene families that conform to each pattern is visualized in the marginal bar plot at the top. Separations between phylogroups are indicated with horizontal black lines. We defined genes that were present in all genomes of a clade and in none of the genomes outside of that clade as signature genes (dark blue); other genes are shown in light blue. Only presence/absence patterns followed by four or more gene families are shown. Patterns of presence in a single species or all species are not shown. Unassigned species are clusters of closely related genomes which could not be assigned to a known species due to low whole-genome similarity to a type strain and/or low 16S rRNA similarity to a type strain." figureDoi="http://doi.org/10.5281/zenodo.10133304" httpUri="https://zenodo.org/record/10133304/files/figure.png" pageId="49" pageNumber="2831">
Figure S
<specimenCount id="9D26FD15FFBC2140D9B0FCC0FF066109" box="[135,169,854,878]" pageId="49" pageNumber="2831" type="generic">6N</specimenCount>
</figureCitation>
.
</paragraph>
</subSubSection>
<subSubSection id="C33A6517FFBC2140D94EFC12FE6E61BC" pageId="49" pageNumber="2831" type="type_taxon">
<paragraph id="8B9F369CFFBC2140D94EFC12FE6E61BC" blockId="49.[120,762,182,987]" pageId="49" pageNumber="2831">
The
<typeStatus id="549B883EFFBC2140D992FC13FF7D61FA" box="[165,210,901,925]" pageId="49" pageNumber="2831">type</typeStatus>
species of the genus is
<taxonomicName id="4C204D1FFFBC2140D88AFC12FD5761FA" authorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" authorityYear="2020" baseAuthorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" baseAuthorityYear="2020" box="[445,760,900,925]" class="Bacilli" family="Lactobacillaceae" genus="Limosilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="49" pageNumber="2831" phylum="Firmicutes" rank="species" species="fermentum" status="comb. nov.">
<emphasis id="B954EA8EFFBC2140D88AFC12FD5761FA" box="[445,760,900,925]" italics="true" pageId="49" pageNumber="2831">Limosilactobacillus fermentum</emphasis>
</taxonomicName>
<taxonomicNameLabel id="A26757F5FFBC2140D94EFC32FF4061DC" box="[121,239,932,956]" pageId="49" pageNumber="2831" rank="species">comb. nov.</taxonomicNameLabel>
;
<taxonomicName id="4C204D1FFFBC2140D9CDFC32FE6E61DB" authorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" authorityYear="2020" box="[250,449,932,956]" class="Bacilli" family="Lactobacillaceae" genus="Limosilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="49" pageNumber="2831" phylum="Firmicutes" rank="genus">
<emphasis id="B954EA8EFFBC2140D9CDFC32FE6E61DB" box="[250,449,932,956]" italics="true" pageId="49" pageNumber="2831">Limosilactobacillus</emphasis>
</taxonomicName>
was previously referred to as the
<taxonomicName id="4C204D1FFFBC2140D996FC55FED961BC" ID-CoL="6NSRF" box="[161,374,963,987]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="49" pageNumber="2831" phylum="Firmicutes" rank="species" species="reuteri">
<emphasis id="B954EA8EFFBC2140D996FC55FED961BC" box="[161,374,963,987]" italics="true" pageId="49" pageNumber="2831">Lactobacillus reuteri</emphasis>
</taxonomicName>
group.
</paragraph>
</subSubSection>
</treatment>
</document>