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<document id="695DCDD5F7F5F832581857FBEA7310D0" ID-DOI="10.1099/ijsem.0.004107" ID-ISSN="1466-5034" ID-Zenodo-Dep="10114954" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.taxonomicNames_approvedBy="felipe" checkinTime="1644597203828" checkinUser="felipe" docAuthor="Zheng, Jinshui, Wittouck, Stijn, Salvetti, Elisa, Franz, Charles M. A. P., Harris, Hugh M. B., Mattarelli, Paola, OToole, Paul W., Pot, Bruno, Vandamme, Peter, Walter, Jens, Watanabe, Koichi, Wuyts, Sander, Felis, Giovanna E., Gänzle, Michael G. &amp; Lebeer, Sarah" docDate="2020" docId="0389878AFFB1214DDA0BFEB2FC2E677C" docLanguage="en" docName="IntJSystEvolMicrobiol.70.4.2782-2858.pdf" docOrigin="International Journal of Systematic and Evolutionary Microbiology 70 (4)" docSource="http://dx.doi.org/10.1099/ijsem.0.004107" docStyle="DocumentStyle:C64F0A4F4C66F6FC2AD4ED89351C6242.3:IntJSystEvolMicrobiol.2017-.journal_article" docStyleId="C64F0A4F4C66F6FC2AD4ED89351C6242" docStyleName="IntJSystEvolMicrobiol.2017-.journal_article" docStyleVersion="3" docTitle="Apilactobacillus Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer 2020, GEN. NOV." docType="treatment" docVersion="6" lastPageNumber="2842" masterDocId="FFB0FFF2FF8D2171D937FF96FFAF6267" masterDocTitle="A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae" masterLastPageNumber="2858" masterPageNumber="2782" pageNumber="2842" updateTime="1700041747501" updateUser="ExternalLinkService">
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<mods:title id="384542761E074778FDDFF97B754BE373">A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae</mods:title>
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DESCRIPTION OF
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<emphasis id="B954EA8EFFB1214DDA0BFEE3FC4D63EA" box="[828,994,373,397]" italics="true" pageId="60" pageNumber="2842">Apilactobacillus</emphasis>
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(A.pi.lac.to.ba.cil'lus. L. fem. n.
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<emphasis id="B954EA8EFFB1214DDC19FEE3FAF763EB" box="[1326,1368,373,396]" italics="true" pageId="60" pageNumber="2842">apis</emphasis>
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bee; N.L. masc. n.
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<emphasis id="B954EA8EFFB1214DDAADFE03FB8C63CA" box="[922,1059,405,429]" italics="true" pageId="60" pageNumber="2842">Lactobacillus</emphasis>
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a bacterial genus name; N.L. masc. n.
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<emphasis id="B954EA8EFFB1214DDA0BFE23FC4D63AA" box="[828,994,437,461]" italics="true" pageId="60" pageNumber="2842">Apilactobacillus</emphasis>
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a lactobacillus from bees).
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Gram positive, rod-shaped, heterofermentative. Growth is generally observed in the range of 1537 °C; many strains grow at acidic conditions below pH 3.0. Strains in the genus have small genomes ranging from 1.42 Mbp for
<taxonomicName id="4C204D1FFFB1214DDC0AFDD2FC1D601B" authorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" authorityYear="2020" baseAuthorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" baseAuthorityYear="2020" class="Bacilli" family="Lactobacillaceae" genus="Apilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="60" pageNumber="2842" phylum="Firmicutes" rank="species" species="kosoi">
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to 1.58 Mbp for
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<taxonomicName id="4C204D1FFFB1214DDD46FDF2FA26601B" authorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" authorityYear="2020" baseAuthorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" baseAuthorityYear="2020" box="[1137,1417,612,636]" class="Bacilli" family="Lactobacillaceae" genus="Apilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="60" pageNumber="2842" phylum="Firmicutes" rank="species" species="quenuiae">Apilactobacillus quenuiae</taxonomicName>
;
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the mol% G+C content of DNA ranges from 30.5 to 36.4. All strains in the genus convert fructose to mannitol; strains in the genus typically ferment very few carbohydrates including the pollen and bee-associated carbohydrates fructose, glucose, and sucrose but not maltose or pentoses. Comparable to
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<emphasis id="B954EA8EFFB1214DDAD0FCB2FB1F615B" box="[999,1200,804,828]" italics="true" pageId="60" pageNumber="2842">Fructilactobacillus</emphasis>
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,
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<emphasis id="B954EA8EFFB1214DDD88FCB2FAC2615B" box="[1215,1389,804,828]" italics="true" pageId="60" pageNumber="2842">Apilactobacillus</emphasis>
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has an insect-associated lifestyle and occurs on flowers, which serve as hub for dispersal of lactobacilli, and insects [
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]. In contrast to
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<emphasis id="B954EA8EFFB1214DDD1AFC12FB5561FB" box="[1069,1274,900,924]" italics="true" pageId="60" pageNumber="2842">Fructilactobacillus</emphasis>
</taxonomicName>
,
<taxonomicName id="4C204D1FFFB1214DDC3DFC12FA1461FB" authorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" authorityYear="2020" box="[1290,1467,900,924]" class="Bacilli" family="Lactobacillaceae" genus="Apilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="60" pageNumber="2842" phylum="Firmicutes" rank="genus">
<emphasis id="B954EA8EFFB1214DDC3DFC12FA1461FB" box="[1290,1467,900,924]" italics="true" pageId="60" pageNumber="2842">Apilactobacillus</emphasis>
</taxonomicName>
has adapted to bees including honeybees (
<emphasis id="B954EA8EFFB1214DDC13FC32FC1C61BB" italics="true" pageId="60" pageNumber="2842">
<taxonomicName id="4C204D1FFFB1214DDC13FC32FA1961DB" authorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" authorityYear="2020" baseAuthorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" baseAuthorityYear="2020" box="[1316,1462,932,956]" class="Bacilli" family="Lactobacillaceae" genus="Apilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="60" pageNumber="2842" phylum="Firmicutes" rank="species" species="apinorum">A. apinorum</taxonomicName>
,
<taxonomicName id="4C204D1FFFB1214DDA0BFC52FC1C61BB" box="[828,947,964,988]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="60" pageNumber="2842" phylum="Firmicutes" rank="species" species="kunkeei">A. kunkeei</taxonomicName>
</emphasis>
) and wild bees (
<emphasis id="B954EA8EFFB1214DDD41FC52FC6F619B" italics="true" pageId="60" pageNumber="2842">
<taxonomicName id="4C204D1FFFB1214DDD41FC52FAB861BB" authorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" authorityYear="2020" baseAuthorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" baseAuthorityYear="2020" box="[1142,1303,964,988]" class="Bacilli" family="Lactobacillaceae" genus="Apilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="60" pageNumber="2842" phylum="Firmicutes" rank="species" species="timberlakei">A. timberlakei</taxonomicName>
,
<taxonomicName id="4C204D1FFFB1214DDC12FC52FA1961BB" authorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" authorityYear="2020" baseAuthorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" baseAuthorityYear="2020" box="[1317,1462,964,988]" class="Bacilli" family="Lactobacillaceae" genus="Apilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="60" pageNumber="2842" phylum="Firmicutes" rank="species" species="micheneri">A. micheneri</taxonomicName>
,
<taxonomicName id="4C204D1FFFB1214DDA0BFC72FC6F619B" authorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" authorityYear="2020" baseAuthorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" baseAuthorityYear="2020" box="[828,960,996,1020]" class="Bacilli" family="Lactobacillaceae" genus="Apilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="60" pageNumber="2842" phylum="Firmicutes" rank="species" species="quenuiae">A. quenuiae</taxonomicName>
</emphasis>
). In the bee and bumblebee gut,
<taxonomicName id="4C204D1FFFB1214DDC0BFC72FCDB667B" authorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" authorityYear="2020" class="Bacilli" family="Lactobacillaceae" genus="Apilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="60" pageNumber="2842" phylum="Firmicutes" rank="genus">
<emphasis id="B954EA8EFFB1214DDC0BFC72FCDB667B" italics="true" pageId="60" pageNumber="2842">Apilactobacillus</emphasis>
</taxonomicName>
is associated with its homofermentative sister genus
<taxonomicName id="4C204D1FFFB1214DDA0BFBB2FBA5665B" authorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" authorityYear="2020" box="[828,1034,1060,1084]" class="Bacilli" family="Lactobacillaceae" genus="Bombilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="60" pageNumber="2842" phylum="Firmicutes" rank="genus">
<emphasis id="B954EA8EFFB1214DDA0BFBB2FBA5665B" box="[828,1034,1060,1084]" italics="true" pageId="60" pageNumber="2842">Bombilactobacillus</emphasis>
</taxonomicName>
.
</paragraph>
</subSubSection>
<subSubSection id="C33A6517FFB1214DDA0BFBC5FCC066CC" pageId="60" pageNumber="2842" type="discussion">
<paragraph id="8B9F369CFFB1214DDA0BFBC5FCC066CC" blockId="60.[826,1468,292,1307]" pageId="60" pageNumber="2842">
A phylogenetic tree on the basis of 16S rRNA genes of all species in the genus
<taxonomicName id="4C204D1FFFB1214DDD16FBE5FB6566EC" authorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" authorityYear="2020" box="[1057,1226,1139,1163]" class="Bacilli" family="Lactobacillaceae" genus="Apilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="60" pageNumber="2842" phylum="Firmicutes" rank="genus">
<emphasis id="B954EA8EFFB1214DDD16FBE5FB6566EC" box="[1057,1226,1139,1163]" italics="true" pageId="60" pageNumber="2842">Apilactobacillus</emphasis>
</taxonomicName>
is provided in
<figureCitation id="131B2A19FFB1214DDC43FBE5FCC466CC" captionStart="Fig" captionStartId="7.[185,216,1617,1636]" captionTargetBox="[264,1323,181,1565]" captionTargetId="figure-17@7.[264,1323,181,1565]" captionTargetPageId="7" captionText="Fig. 6. Gene family presence/absence patterns in Lactobacillaceae and Leuconostocaceae. Each column represents a gene family presence/absence pattern in species of Lactobacillaceae and Leuconostoaceae, where presence is indicated with a dot. The absolute number of gene families that conform to each pattern is visualized in the marginal bar plot at the top. Separations between phylogroups are indicated with horizontal black lines. We defined genes that were present in all genomes of a clade and in none of the genomes outside of that clade as signature genes (dark blue); other genes are shown in light blue. Only presence/absence patterns followed by four or more gene families are shown. Patterns of presence in a single species or all species are not shown. Unassigned species are clusters of closely related genomes which could not be assigned to a known species due to low whole-genome similarity to a type strain and/or low 16S rRNA similarity to a type strain." figureDoi="http://doi.org/10.5281/zenodo.10133304" httpUri="https://zenodo.org/record/10133304/files/figure.png" pageId="60" pageNumber="2842">Figure S6R</figureCitation>
.
</paragraph>
</subSubSection>
<subSubSection id="C33A6517FFB1214DDA0BFB54FC2E677C" pageId="60" pageNumber="2842" type="type_taxon">
<paragraph id="8B9F369CFFB1214DDA0BFB54FC2E677C" blockId="60.[826,1468,292,1307]" pageId="60" pageNumber="2842">
The
<typeStatus id="549B883EFFB1214DDA5FFB55FC3A66BC" box="[872,917,1219,1243]" pageId="60" pageNumber="2842">type</typeStatus>
species of the genus is
<taxonomicName id="4C204D1FFFB1214DDD49FB54FADA66BD" authorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" authorityYear="2020" baseAuthorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" baseAuthorityYear="2020" box="[1150,1397,1218,1242]" class="Bacilli" family="Lactobacillaceae" genus="Apilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="60" pageNumber="2842" phylum="Firmicutes" rank="species" species="kunkeei" status="comb. nov.">
<emphasis id="B954EA8EFFB1214DDD49FB54FADA66BD" box="[1150,1397,1218,1242]" italics="true" pageId="60" pageNumber="2842">Apilactobacillus kunkeei</emphasis>
</taxonomicName>
<taxonomicNameLabel id="A26757F5FFB1214DDC4DFB54FCC6669D" pageId="60" pageNumber="2842" rank="species">comb. nov.</taxonomicNameLabel>
<emphasis id="B954EA8EFFB1214DDA58FB74FBA1669D" box="[879,1038,1250,1274]" italics="true" pageId="60" pageNumber="2842">Apilactobacilus</emphasis>
was previously referred to as
<taxonomicName id="4C204D1FFFB1214DDC79FB75FA14669D" authorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" authorityYear="2020" baseAuthorityName="Zheng &amp; Wittouck &amp; Salvetti &amp; Franz &amp; Harris &amp; Mattarelli &amp; OToole &amp; Pot &amp; Vandamme &amp; Walter &amp; Watanabe &amp; Wuyts &amp; Felis &amp; Gänzle &amp; Lebeer" baseAuthorityYear="2020" box="[1358,1467,1250,1274]" class="Bacilli" family="Lactobacillaceae" genus="Apilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="60" pageNumber="2842" phylum="Firmicutes" rank="species" species="kunkeei">
<emphasis id="B954EA8EFFB1214DDC79FB75FA14669D" box="[1358,1467,1250,1274]" italics="true" pageId="60" pageNumber="2842">L. kunkeei</emphasis>
</taxonomicName>
group.
</paragraph>
</subSubSection>
</treatment>
</document>