206 lines
20 KiB
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206 lines
20 KiB
XML
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<mods:title id="C2A291B3D6CF9ABA42FB5BFF516DF67E">A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae</mods:title>
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<mods:namePart id="FED020AC39AA7DDD0F11888F3FF4F27D">Zheng, Jinshui</mods:namePart>
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<mods:namePart id="3320C347C4C79B7D0326F48B05A9C709">Wittouck, Stijn</mods:namePart>
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<mods:namePart id="CD21AED30DE566D5B3CFEBA192E81775">Salvetti, Elisa</mods:namePart>
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<mods:namePart id="FF0DE31B3E74607B7FCD5329F3E1A711">Harris, Hugh M. B.</mods:namePart>
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<mods:namePart id="4E5CC75B7CFC8B232AE1AFC359A3A6F7">O’Toole, Paul W.</mods:namePart>
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<mods:namePart id="735603E17367668811FB2D7C4258F7D3">Pot, Bruno</mods:namePart>
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<mods:namePart id="58847F89797D032B7BFDBCDB70D80F04">Walter, Jens</mods:namePart>
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<mods:namePart id="5ECF9AC7994395B690E6C2F36F10DE74">Watanabe, Koichi</mods:namePart>
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<mods:namePart id="2C93D33C557B585B7F94729FCFAF1EF7">Wuyts, Sander</mods:namePart>
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<mods:namePart id="16C7530E27C26EFFEB7B50D43786C553">Felis, Giovanna E.</mods:namePart>
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<mods:namePart id="CD2B258A19CB81C80C761344D590C345">Gänzle, Michael G.</mods:namePart>
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<mods:namePart id="FA4924027A3666820CF040DE52DA9D8A">Lebeer, Sarah</mods:namePart>
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<mods:title id="0C7A57A96262C70F21019742A380CEE9">International Journal of Systematic and Evolutionary Microbiology</mods:title>
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<mods:date id="F805B2AE3EA19BEE8C4D1AB1D8DEDDD5">2020</mods:date>
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<mods:number id="740A7C75AEF035ED4CB7F3600208E0D1">70</mods:number>
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<treatment id="0389878AFFA3215FDA0BFECAFC48665F" ID-DOI="http://doi.org/10.5281/zenodo.6309919" ID-Zenodo-Dep="6309919" LSID="urn:lsid:plazi:treatment:0389878AFFA3215FDA0BFECAFC48665F" httpUri="http://treatment.plazi.org/id/0389878AFFA3215FDA0BFECAFC48665F" lastPageNumber="2828" pageId="46" pageNumber="2828">
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<heading id="D0D781F0FFA3215FDA0BFECAFC6663F8" allCaps="true" bold="true" fontSize="12" level="2" pageId="46" pageNumber="2828" reason="3">
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<emphasis id="B954EA8EFFA3215FDA0BFECAFC6663F8" bold="true" pageId="46" pageNumber="2828">
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DESCRIPTION OF
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<taxonomicName id="4C204D1FFFA3215FDD02FECAFA3C631E" authority="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer, 2020" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" box="[1077,1427,348,377]" class="Bacilli" family="Lactobacillaceae" genus="Furfurilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="46" pageNumber="2828" phylum="Firmicutes" rank="genus" status="gen. nov.">
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<emphasis id="B954EA8EFFA3215FDD02FECAFA3C631E" bold="true" box="[1077,1427,348,377]" italics="true" pageId="46" pageNumber="2828">FURFURILACTOBACILLUS</emphasis>
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<taxonomicName id="4C204D1FFFA3215FDA0BFE3DFBA263A4" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" box="[828,1037,427,451]" class="Bacilli" family="Lactobacillaceae" genus="Furfurilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="46" pageNumber="2828" phylum="Firmicutes" rank="genus">
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<emphasis id="B954EA8EFFA3215FDA0BFE3DFBA263A4" box="[828,1037,427,451]" italics="true" pageId="46" pageNumber="2828">Furfurilactobacillus</emphasis>
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(Fur.fu.ri.lac.to.ba.cil’lus. L. masc. n.
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<emphasis id="B954EA8EFFA3215FDA0BFE5CFCD46385" box="[828,891,458,482]" italics="true" pageId="46" pageNumber="2828">furfur</emphasis>
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bran, relating to the origin of furfurilactobacilli from cereal fermentations; N.L. masc. n.
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<taxonomicName id="4C204D1FFFA3215FDD8CFE7FFAEB6066" authorityName="Beijerinck" authorityYear="1901" box="[1211,1348,489,513]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="46" pageNumber="2828" phylum="Firmicutes" rank="genus">
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<emphasis id="B954EA8EFFA3215FDD8CFE7FFAEB6066" box="[1211,1348,489,513]" italics="true" pageId="46" pageNumber="2828">Lactobacillus</emphasis>
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</taxonomicName>
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a bacterial genus name; N.L. masc. n.
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<taxonomicName id="4C204D1FFFA3215FDD64FD91FA8F6078" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" box="[1107,1312,519,543]" class="Bacilli" family="Lactobacillaceae" genus="Furfurilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="46" pageNumber="2828" phylum="Firmicutes" rank="genus">
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<emphasis id="B954EA8EFFA3215FDD64FD91FA8F6078" box="[1107,1312,519,543]" italics="true" pageId="46" pageNumber="2828">Furfurilactobacillus</emphasis>
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</taxonomicName>
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a lactobacillus from bran).
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<subSubSection id="C33A6517FFA3215FDA0BFDC2FB006106" pageId="46" pageNumber="2828" type="description">
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<paragraph id="8B9F369CFFA3215FDA0BFDC2FB006106" blockId="46.[827,1472,348,1080]" pageId="46" pageNumber="2828">
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Heterofermentative and aerotolerant. Growth is observed at 15 and 37°C but not at 45 °C. The two species in the genus with genome sequences available have a genome size of 2.9–3.0 Mbp and a mol% G+C content of DNA of 43–44 %. Species in the genus were isolated from sourdough or spoiled beer and have an exceptional capacity to metabolize phenolic compounds [
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<bibRefCitation id="EFB14B6DFFA3215FDD06FC9AFBF16143" author="Ripari V & Bai Y & Ganzle MG" box="[1073,1118,780,804]" pageId="46" pageNumber="2828" pagination="43 - 51" refId="ref70404" refString="240. Ripari V, Bai Y, Ganzle MG. Metabolism of phenolic acids in whole wheat and rye malt sourdoughs. Food Microbiol 2019; 77: 43 - 51." type="journal article" year="2019">240</bibRefCitation>
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,
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<bibRefCitation id="EFB14B6DFFA3215FDD5EFC9AFB396143" author="Gaur G & J-H O & Filannino P & Gobbetti M & van Pijkeren J-P" box="[1129,1174,780,804]" pageId="46" pageNumber="2828" refId="ref70437" refString="241. Gaur G, J-H O, Filannino P, Gobbetti M, van Pijkeren J-P et al. Genetic determinants of hydroxycinnamic acid metabolism in heterofermentative lactobacilli. Appl Environ Microbiol 2020; 86: e 02461 - 19." type="journal volume" year="2020">241</bibRefCitation>
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]. The ecology of the genus remains largely unexplored but appears to be similar to the nomadic lifestyle of
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||
<taxonomicName id="4C204D1FFFA3215FDD2DFCDCFB076106" authorityName="Bergey et al." authorityYear="1923" baseAuthorityName="Orla-Jensen" baseAuthorityYear="1919" box="[1050,1192,841,865]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="46" pageNumber="2828" phylum="Firmicutes" rank="species" species="plantarum">
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<emphasis id="B954EA8EFFA3215FDD2DFCDCFB076106" box="[1050,1192,841,865]" italics="true" pageId="46" pageNumber="2828">L. plantarum</emphasis>
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</taxonomicName>
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.
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</paragraph>
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<subSubSection id="C33A6517FFA3215FDA0BFCE1FCC561AB" pageId="46" pageNumber="2828" type="discussion">
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<paragraph id="8B9F369CFFA3215FDA0BFCE1FCC561AB" blockId="46.[827,1472,348,1080]" pageId="46" pageNumber="2828">
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A phylogenetic tree on the basis of 16S rRNA genes of all species in the genus
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<taxonomicName id="4C204D1FFFA3215FDD2FFC00FB7761C9" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" box="[1048,1240,918,942]" class="Bacilli" family="Lactobacillaceae" genus="Lactiplantibacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="46" pageNumber="2828" phylum="Firmicutes" rank="genus">
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<emphasis id="B954EA8EFFA3215FDD2FFC00FB7761C9" box="[1048,1240,918,942]" italics="true" pageId="46" pageNumber="2828">Lactiplantibacillus</emphasis>
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</taxonomicName>
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is provided in
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<figureCitation id="131B2A19FFA3215FDC41FC00FCC961AB" captionStart="Fig" captionStartId="7.[185,216,1617,1636]" captionTargetBox="[264,1323,181,1565]" captionTargetId="figure-17@7.[264,1323,181,1565]" captionTargetPageId="7" captionText="Fig. 6. Gene family presence/absence patterns in Lactobacillaceae and Leuconostocaceae. Each column represents a gene family presence/absence pattern in species of Lactobacillaceae and Leuconostoaceae, where presence is indicated with a dot. The absolute number of gene families that conform to each pattern is visualized in the marginal bar plot at the top. Separations between phylogroups are indicated with horizontal black lines. We defined genes that were present in all genomes of a clade and in none of the genomes outside of that clade as ‘signature genes’ (dark blue); other genes are shown in light blue. Only presence/absence patterns followed by four or more gene families are shown. Patterns of presence in a single species or all species are not shown. Unassigned species are clusters of closely related genomes which could not be assigned to a known species due to low whole-genome similarity to a type strain and/or low 16S rRNA similarity to a type strain." figureDoi="http://doi.org/10.5281/zenodo.10133304" httpUri="https://zenodo.org/record/10133304/files/figure.png" pageId="46" pageNumber="2828">
|
||
Figure S
|
||
<specimenCount id="9D26FD15FFA3215FDA7EFC22FCC961AB" box="[841,870,948,972]" pageId="46" pageNumber="2828" type="generic">6L</specimenCount>
|
||
</figureCitation>
|
||
.
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="C33A6517FFA3215FDA0BFC74FC48665F" pageId="46" pageNumber="2828" type="type_taxon">
|
||
<paragraph id="8B9F369CFFA3215FDA0BFC74FC48665F" blockId="46.[827,1472,348,1080]" pageId="46" pageNumber="2828">
|
||
The
|
||
<typeStatus id="549B883EFFA3215FDA5BFC75FC35619C" box="[876,922,995,1019]" pageId="46" pageNumber="2828">type</typeStatus>
|
||
species of the genus is
|
||
<taxonomicName id="4C204D1FFFA3215FDDAAFC74FA15619D" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="2020" box="[1181,1466,994,1018]" class="Bacilli" family="Lactobacillaceae" genus="Furfurilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="46" pageNumber="2828" phylum="Firmicutes" rank="species" species="rossiae" status="comb. nov.">
|
||
<emphasis id="B954EA8EFFA3215FDDAAFC74FA15619D" box="[1181,1466,994,1018]" italics="true" pageId="46" pageNumber="2828">Furfurilactobacillus rossiae</emphasis>
|
||
</taxonomicName>
|
||
<taxonomicNameLabel id="A26757F5FFA3215FDA0BFB97FC1E667F" box="[828,945,1025,1049]" pageId="46" pageNumber="2828" rank="species">comb. nov.</taxonomicNameLabel>
|
||
;
|
||
<taxonomicName id="4C204D1FFFA3215FDA8DFB97FB28667E" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" box="[954,1159,1025,1049]" class="Bacilli" family="Lactobacillaceae" genus="Furfurilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="46" pageNumber="2828" phylum="Firmicutes" rank="genus">
|
||
<emphasis id="B954EA8EFFA3215FDA8DFB97FB28667E" box="[954,1159,1025,1049]" italics="true" pageId="46" pageNumber="2828">Furfurilactobacillus</emphasis>
|
||
</taxonomicName>
|
||
was previously referred to as
|
||
<taxonomicName id="4C204D1FFFA3215FDA0BFBB6FC336650" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="2020" box="[828,924,1056,1079]" class="Bacilli" family="Lactobacillaceae" genus="Furfurilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="46" pageNumber="2828" phylum="Firmicutes" rank="species" species="rossiae">
|
||
<emphasis id="B954EA8EFFA3215FDA0BFBB6FC336650" box="[828,924,1056,1079]" italics="true" pageId="46" pageNumber="2828">L. rossiae</emphasis>
|
||
</taxonomicName>
|
||
group.
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |