325 lines
38 KiB
XML
325 lines
38 KiB
XML
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<mods:title id="4CE23F0904D5616A4DE8E1C4AEB6E700">First report of the lace bug Neoplerochila paliatseasi (Rodrigues, 1981) (Hemiptera Tingidae) infesting cultivated olive trees in South Africa, and its complete mitochondrial sequence</mods:title>
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<mods:namePart id="81984F3F41C81ED6DC1C3657CEB7C692">Cornwall, Morgan</mods:namePart>
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<mods:namePart id="E1F7133A87707D02450E515D7FBF838D">Powell, Chanté</mods:namePart>
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<mods:namePart id="3B9C4346154E34DCA38C1C0C403D0C7C">Allsopp, Elleunorah</mods:namePart>
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<mods:namePart id="C32AC4FEFDC9D0FB313436B110D7C2B3">Noort, Simon Van</mods:namePart>
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<mods:namePart id="EC3D5D0BDC39DC2BE10F8493AFBEDF50">Guilbert, Eric</mods:namePart>
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<mods:namePart id="5683C39DF9FF04D0D8AA0BAD6E8E7E6D">Asch, Barbara Van</mods:namePart>
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<mods:title id="7B390EBAD8EB33004AD40B792126CA02">Zootaxa</mods:title>
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<mods:date id="2B1787072EBFDFDD6D1A109AB90A5806">2020</mods:date>
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<mods:number id="7300CC0DDDA753AA8118A1E2C4B91521">2020-01-16</mods:number>
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<mods:number id="58B8665716449913038CB167DA777D35">4722</mods:number>
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<mods:identifier id="95E3BA5628343F7EE74F230880DA6BCA" type="DOI">10.11646/zootaxa.4722.5.3</mods:identifier>
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<paragraph id="8BDA764FF00C1C01FF74F9732693F90B" blockId="10.[151,412,1669,1696]" box="[151,412,1669,1696]" pageId="10" pageNumber="453">
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<heading id="D092C123F00C1C01FF74F9732693F90B" bold="true" box="[151,412,1669,1696]" fontSize="11" level="1" pageId="10" pageNumber="453" reason="1">
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<emphasis id="B911AA5DF00C1C01FF74F9732693F90B" bold="true" box="[151,412,1669,1696]" italics="true" pageId="10" pageNumber="453">
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Phylogeny of
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<taxonomicName id="4C650DCCF00C1C01FED5F9732693F90B" ID-CoL="H9W" ID-ENA="236450" authority="Laporte, 1833" authorityName="Laporte" authorityYear="1833" box="[310,412,1669,1696]" class="Insecta" family="Tingidae" kingdom="Animalia" order="Hemiptera" pageId="10" pageNumber="453" phylum="Arthropoda" rank="family">Tingidae</taxonomicName>
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</emphasis>
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</heading>
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</paragraph>
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<subSubSection id="C37F25C4F00C1C07FF74F93824CEFF50" lastPageId="12" lastPageNumber="455" pageId="10" pageNumber="453" type="description">
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<paragraph id="8BDA764FF00C1C01FF74F93826D8F86B" blockId="10.[151,1437,1742,1985]" pageId="10" pageNumber="453">
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Phylogenetic relationships among
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<taxonomicName id="4C650DCCF00C1C01FDF4F9382575F943" box="[535,634,1742,1768]" class="Insecta" family="Tingidae" kingdom="Animalia" order="Hemiptera" pageId="10" pageNumber="453" phylum="Arthropoda" rank="family">Tingidae</taxonomicName>
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were inferred including all the mitogenomes available, except
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<taxonomicName id="4C650DCCF00C1C01FAD5F93926EAF8A7" authority="Drake & Poor 1936" authorityName="Drake & Poor" authorityYear="1936" class="Insecta" family="Tingidae" genus="Eteoneus" kingdom="Animalia" order="Hemiptera" pageId="10" pageNumber="453" phylum="Arthropoda" rank="species" species="sigillatus">
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<emphasis id="B911AA5DF00C1C01FAD5F93927F1F8A7" italics="true" pageId="10" pageNumber="453">Eteoneus sigillatus</emphasis>
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Drake & Poor 1936
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</taxonomicName>
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(
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<accessionNumber id="9436EBACF00C1C01FE16F9042579F8A7" box="[501,630,1778,1804]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/KU896784" pageId="10" pageNumber="453">KU896784</accessionNumber>
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, unverified sequence). This dataset represents the highest mitogenomic coverage of
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<taxonomicName id="4C650DCCF00C1C01FEC2F8E0268BF89B" box="[289,388,1814,1840]" class="Insecta" family="Tingidae" kingdom="Animalia" order="Hemiptera" pageId="10" pageNumber="453" phylum="Arthropoda" rank="family">Tingidae</taxonomicName>
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so far, although it represents a mere 0.6% of the family (14 species in 12 genera), all belonging to the subfamily
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<taxonomicName id="4C650DCCF00C1C01FE98F8CC26EEF8FF" authorityName="Laporte" authorityYear="1833" box="[379,481,1850,1876]" class="Insecta" family="Tingidae" kingdom="Animalia" order="Hemiptera" pageId="10" pageNumber="453" phylum="Arthropoda" rank="subFamily" subFamily="Tinginae">Tinginae</taxonomicName>
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. We tested three datasets: PCG123 with each codon position partitioned, PCG12 (only the 1
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<superScript id="7C10DB07F00C1C01FF2DF8AB27D6F8C0" attach="left" box="[206,217,1885,1899]" fontSize="6" pageId="10" pageNumber="453">st</superScript>
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and the 2
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<superScript id="7C10DB07F00C1C01FEA4F8AB2658F8C0" attach="left" box="[327,343,1885,1899]" fontSize="6" pageId="10" pageNumber="453">nd</superScript>
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codon positions, and AA (amino acid sequence. PCG12 and AA were tested as this approach was shown to decrease the impact of the high compositional heterogeneity typical of
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<taxonomicName id="4C650DCCF00C1C01FBC5F87523A5F836" box="[1062,1194,1923,1949]" class="Insecta" higherTaxonomySource="GBIF" kingdom="Animalia" order="Heteroptera" pageId="10" pageNumber="453" phylum="Arthropoda" rank="order">Heteroptera</taxonomicName>
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mitogenomes (
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<bibRefCitation id="EFF40BBEF00C1C01FABBF87427F2F86B" author="Liu, Y. & Song, F. & Jiang, P. & Wilson, J. J. & Cai, W. & Li, H." pageId="10" pageNumber="453" pagination="135 - 144" refId="ref10665" refString="Liu, Y., Song, F., Jiang, P., Wilson, J. J., Cai, W. & Li, H. (2018) Compositional heterogeneity in true bug mitochondrial phylogenomics. Molecular Phylogenetics and Evolution, 118, 135 - 144. https: // doi. org / 10.1016 / j. ympev. 2017.09.025" type="journal article" year="2018">
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||
Liu
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||
<emphasis id="B911AA5DF00C1C01FA6BF87527BBF86B" italics="true" pageId="10" pageNumber="453">et al.</emphasis>
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||
, 2018
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||
</bibRefCitation>
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||
;
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||
<bibRefCitation id="EFF40BBEF00C1C01FEEBF85126C3F86B" author="Yang, H. & Li, T. & Dang, K. & Bu, W." box="[264,460,1958,1985]" pageId="10" pageNumber="453" pagination="264" refId="ref11653" refString="Yang, H. Li, T., Dang, K. & Bu, W. (2018) Compositional and mutational rate heterogeneity in mitochondrial genomes and its effect on the phylogenetic inferences of Cimicomorpha (Hemiptera: Heteroptera). BMC Genomics, 19 (1), 264. https: // doi. org / 10.1186 / s 12864 - 018 - 4650 - 9" type="journal article" year="2018">
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Yang
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<emphasis id="B911AA5DF00C1C01FEAAF851268EF86B" box="[329,385,1958,1984]" italics="true" pageId="10" pageNumber="453">et al.</emphasis>
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, 2018
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</bibRefCitation>
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).
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</paragraph>
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<caption id="DF1A26C7F00D1C00FF74FC9F24C7FC0D" ID-DOI="http://doi.org/10.5281/zenodo.3609692" ID-Zenodo-Dep="3609692" httpUri="https://zenodo.org/record/3609692/files/figure.png" pageId="11" pageNumber="454" startId="11.[151,250,873,898]" targetBox="[237,1349,187,843]" targetPageId="11">
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<paragraph id="8BDA764FF00D1C00FF74FC9F24C7FC0D" blockId="11.[151,1436,873,934]" pageId="11" pageNumber="454">
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<emphasis id="B911AA5DF00D1C00FF74FC9F261BFC29" bold="true" box="[151,276,873,898]" pageId="11" pageNumber="454">FIGURE 5.</emphasis>
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Usage of start codons (ATG, ATA, ATT, ATC and GTG) found in the complete complement of 13 mitochondrial protein-coding genes from 15 lace bug species belonging to the family
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<taxonomicName id="4C650DCCF00D1C00FC8BFC7B24CAFC0D" box="[872,965,909,934]" class="Insecta" family="Tingidae" kingdom="Animalia" order="Hemiptera" pageId="11" pageNumber="454" phylum="Arthropoda" rank="family">Tingidae</taxonomicName>
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.
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</paragraph>
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</caption>
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<paragraph id="8BDA764FF00D1C07FF24FC2224CEFF50" blockId="11.[151,1437,980,2014]" lastBlockId="12.[151,1436,153,251]" lastPageId="12" lastPageNumber="455" pageId="11" pageNumber="454">
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Statistical support was higher in the PCG12 tree (BPP = 1, all nodes) than in the AA or the PCG123 trees, where several nodes had a BPP lower than 1 (
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<figureCitation id="135E6ACAF00D1C00FDAFFC0E25A1FBB9" box="[588,686,1016,1042]" captionStart="FIGURE 7" captionStartId="13.[151,250,1652,1677]" captionTargetBox="[163,1432,1178,1621]" captionTargetId="figure@13.[152,1436,1173,1627]" captionTargetPageId="13" captionText="FIGURE 7. Phylogenetic relationships among 15 lace bug species (Hemiptera: Tingidae) based on 13 mitochondrial proteincoding genes, using Bayesian inference. PCG123 was constructed using DNA sequences with partitioned codon positions. PCG12 was constructed using DNA sequences, excluding the 3rd codon position. AA was constructed using amino acid sequences. Trees were rooted by the outgroups Adelphocoris fasciaticollis and Apolygus lucorum (Miridae). Nodal statistical support is given as Bayesian posterior probability." figureDoi="http://doi.org/10.5281/zenodo.3609696" httpUri="https://zenodo.org/record/3609696/files/figure.png" pageId="11" pageNumber="454">Figure 7</figureCitation>
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). The PCG12 and AA trees showed a very similar topology, differing only in the positions of
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<taxonomicName id="4C650DCCF00D1C00FE2EFBEB256EFB9D" baseAuthorityName="Linnaeus" baseAuthorityYear="1746" box="[461,609,1052,1078]" class="Insecta" family="Tingidae" genus="Tingis" kingdom="Animalia" order="Hemiptera" pageId="11" pageNumber="454" phylum="Arthropoda" rank="species" species="cardui">
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<emphasis id="B911AA5DF00D1C00FE2EFBEB256EFB9D" box="[461,609,1052,1078]" italics="true" pageId="11" pageNumber="454">Tingis cardui</emphasis>
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</taxonomicName>
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and
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<taxonomicName id="4C650DCCF00D1C00FD7BFBEA24F3FB9C" authority="(Fieber 1861)" authorityName="Fieber" authorityYear="1861" baseAuthorityName="Fieber" baseAuthorityYear="1861" box="[664,1020,1052,1079]" class="Insecta" family="Tingidae" genus="Dictyla" kingdom="Animalia" order="Hemiptera" pageId="11" pageNumber="454" phylum="Arthropoda" rank="species" species="platyoma">
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<emphasis id="B911AA5DF00D1C00FD7BFBEA2456FB9D" box="[664,857,1052,1078]" italics="true" pageId="11" pageNumber="454">Dictyla platyoma</emphasis>
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(Fieber 1861)
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</taxonomicName>
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, which also had the lowest statistical support of all nodes in the AA tree. Although the order of some deeper nodes differed between the PCG123, PCG12 and AA trees, all topologies showed
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<taxonomicName id="4C650DCCF00D1C00FDDEFB9224C2FBD4" authority="(Phatnomini)" authorityName="Fieber" authorityYear="1844" baseAuthorityName="Phatnomini" box="[573,973,1124,1151]" class="Insecta" family="Tingidae" genus="Phatnoma" kingdom="Animalia" order="Hemiptera" pageId="11" pageNumber="454" phylum="Arthropoda" rank="species" species="laciniatum">
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<emphasis id="B911AA5DF00D1C00FDDEFB92243EFBD5" box="[573,817,1124,1150]" italics="true" pageId="11" pageNumber="454">Phatnoma laciniatum</emphasis>
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(Phatnomini)
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</taxonomicName>
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in the basal position to all other species (
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<taxonomicName id="4C650DCCF00D1C00FF7CFB7E27F9FB08" box="[159,246,1160,1187]" class="Insecta" family="Tingidae" kingdom="Animalia" order="Hemiptera" pageId="11" pageNumber="454" phylum="Arthropoda" rank="tribe" tribe="Tingini">Tingini</taxonomicName>
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), as expected, and
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<taxonomicName id="4C650DCCF00D1C00FE2EFB7E2546FB09" authorityName="Stal" authorityYear="1873" box="[461,585,1160,1186]" class="Insecta" family="Tingidae" genus="Stephanitis" kingdom="Animalia" order="Hemiptera" pageId="11" pageNumber="454" phylum="Arthropoda" rank="genus">
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<emphasis id="B911AA5DF00D1C00FE2EFB7E2546FB09" box="[461,585,1160,1186]" italics="true" pageId="11" pageNumber="454">Stephanitis</emphasis>
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</taxonomicName>
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and
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<taxonomicName id="4C650DCCF00D1C00FD61FB7E2409FB09" authorityName="Stal" authorityYear="1873" box="[642,774,1160,1186]" class="Insecta" family="Tingidae" genus="Corythucha" kingdom="Animalia" order="Hemiptera" pageId="11" pageNumber="454" phylum="Arthropoda" rank="genus">
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<emphasis id="B911AA5DF00D1C00FD61FB7E2409FB09" box="[642,774,1160,1186]" italics="true" pageId="11" pageNumber="454">Corythucha</emphasis>
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</taxonomicName>
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, the only genera represented by more than one species, as monophyletic. These two features were also recovered in previous phylogenies (
|
||
<bibRefCitation id="EFF40BBEF00D1C00FBF8FB5A27DCFB41" author="Guilbert, E. & Damgaard, J. & D'Haese, C. A." pageId="11" pageNumber="454" pagination="431 - 441" refId="ref9782" refString="Guilbert, E., Damgaard, J. & D'Haese, C. A. (2014) Phylogeny of the lacebugs (Insecta: Heteroptera: Tingidae) using morphological and molecular data. Systematic Entomology, 39 (3), 431 - 441. https: // doi. org / 10.1111 / syen. 12045" type="journal article" year="2014">Guilbert, Damgaard and D’Haese, 2014</bibRefCitation>
|
||
;
|
||
<bibRefCitation id="EFF40BBEF00D1C00FF3EFB262682FB41" author="Lin, A. & Zhao, X. & Li, X. & Song, N." box="[221,397,1232,1258]" pageId="11" pageNumber="454" pagination="897 - 899" refId="ref10531" refString="Lin, A., Zhao, X., Li, X. & Song, N. (2017) The complete mitochondrial genome of Corythucha marmorata (Hemiptera: Tingidae). Mitochondrial DNA Part B, 2 (2), 897 - 899. https: // doi. org / 10.1080 / 23802359.2017.1407712" type="journal article" year="2017">
|
||
Lin
|
||
<emphasis id="B911AA5DF00D1C00FEE8FB27264CFB41" box="[267,323,1232,1258]" italics="true" pageId="11" pageNumber="454">et al.</emphasis>
|
||
, 2017
|
||
</bibRefCitation>
|
||
).
|
||
<taxonomicName id="4C650DCCF00D1C00FE7DFB262555FB41" baseAuthorityName="Takeya" baseAuthorityYear="1932" box="[414,602,1232,1258]" class="Insecta" family="Tingidae" genus="Metasalis" higherTaxonomySource="GBIF" kingdom="Animalia" order="Hemiptera" pageId="11" pageNumber="454" phylum="Arthropoda" rank="species" species="populi">
|
||
<emphasis id="B911AA5DF00D1C00FE7DFB262555FB41" box="[414,602,1232,1258]" italics="true" pageId="11" pageNumber="454">Metasalis populi</emphasis>
|
||
</taxonomicName>
|
||
was not recovered as sister to
|
||
<taxonomicName id="4C650DCCF00D1C00FC4FFB272330FB41" baseAuthorityName="Linnaeus" baseAuthorityYear="1746" box="[940,1087,1232,1258]" class="Insecta" family="Tingidae" genus="Tingis" kingdom="Animalia" order="Hemiptera" pageId="11" pageNumber="454" phylum="Arthropoda" rank="species" species="cardui">
|
||
<emphasis id="B911AA5DF00D1C00FC4FFB272330FB41" box="[940,1087,1232,1258]" italics="true" pageId="11" pageNumber="454">Tingis cardui</emphasis>
|
||
</taxonomicName>
|
||
, in disagreement with their putative close relationship, as
|
||
<taxonomicName id="4C650DCCF00D1C00FE2EFB032534FAA5" baseAuthorityName="Takeya" baseAuthorityYear="1932" box="[461,571,1268,1294]" class="Insecta" family="Tingidae" genus="Metasalis" higherTaxonomySource="GBIF" kingdom="Animalia" order="Hemiptera" pageId="11" pageNumber="454" phylum="Arthropoda" rank="species" species="populi">
|
||
<emphasis id="B911AA5DF00D1C00FE2EFB032534FAA5" box="[461,571,1268,1294]" italics="true" pageId="11" pageNumber="454">M. populi</emphasis>
|
||
</taxonomicName>
|
||
was previously described as a
|
||
<taxonomicName id="4C650DCCF00D1C00FC76FB0324D6FAA5" authorityName="Fabricius" authorityYear="1803" box="[917,985,1269,1294]" class="Insecta" family="Tingidae" genus="Tingis" kingdom="Animalia" order="Hemiptera" pageId="11" pageNumber="454" phylum="Arthropoda" rank="genus">
|
||
<emphasis id="B911AA5DF00D1C00FC76FB0324D6FAA5" box="[917,985,1269,1294]" italics="true" pageId="11" pageNumber="454">Tingis</emphasis>
|
||
</taxonomicName>
|
||
species. Instead,
|
||
<taxonomicName id="4C650DCCF00D1C00FB7DFB032204FAA5" baseAuthorityName="Takeya" baseAuthorityYear="1932" box="[1182,1291,1268,1294]" class="Insecta" family="Tingidae" genus="Metasalis" higherTaxonomySource="GBIF" kingdom="Animalia" order="Hemiptera" pageId="11" pageNumber="454" phylum="Arthropoda" rank="species" species="populi">
|
||
<emphasis id="B911AA5DF00D1C00FB7DFB032204FAA5" box="[1182,1291,1268,1294]" italics="true" pageId="11" pageNumber="454">M. populi</emphasis>
|
||
</taxonomicName>
|
||
was sister to the
|
||
<taxonomicName id="4C650DCCF00D1C00FF23FAEE2633FA99" authorityName="Stal" authorityYear="1873" box="[192,316,1304,1330]" class="Insecta" family="Tingidae" genus="Stephanitis" kingdom="Animalia" order="Hemiptera" pageId="11" pageNumber="454" phylum="Arthropoda" rank="genus">
|
||
<emphasis id="B911AA5DF00D1C00FF23FAEE2633FA99" box="[192,316,1304,1330]" italics="true" pageId="11" pageNumber="454">Stephanitis</emphasis>
|
||
</taxonomicName>
|
||
clade, and
|
||
<taxonomicName id="4C650DCCF00D1C00FE5FFAEE243CFA99" authority="Drake 1954" authorityName="Drake" authorityYear="1954" box="[444,819,1303,1330]" class="Insecta" family="Tingidae" genus="Cysteochila" kingdom="Animalia" order="Hemiptera" pageId="11" pageNumber="454" phylum="Arthropoda" rank="species" species="chiniana">
|
||
<emphasis id="B911AA5DF00D1C00FE5FFAEE25A6FA99" box="[444,681,1304,1330]" italics="true" pageId="11" pageNumber="454">Cysteochila chiniana</emphasis>
|
||
Drake 1954
|
||
</taxonomicName>
|
||
was sister to
|
||
<taxonomicName id="4C650DCCF00D1C00FC28FAEE2275FA99" authority="Horvath 1926" authorityName="Horvath" authorityYear="1926" box="[971,1402,1304,1330]" class="Insecta" family="Tingidae" genus="Trachypeplus" kingdom="Animalia" order="Hemiptera" pageId="11" pageNumber="454" phylum="Arthropoda" rank="species" species="jacobsoni">
|
||
<emphasis id="B911AA5DF00D1C00FC28FAEE23D9FA99" box="[971,1238,1304,1330]" italics="true" pageId="11" pageNumber="454">Trachypeplus jacobsoni</emphasis>
|
||
Horváth 1926
|
||
</taxonomicName>
|
||
, as previously found (
|
||
<bibRefCitation id="EFF40BBEF00D1C00FE87FACA2526FAFD" author="Yang, H. & Li, T. & Dang, K. & Bu, W." box="[356,553,1340,1366]" pageId="11" pageNumber="454" pagination="264" refId="ref11653" refString="Yang, H. Li, T., Dang, K. & Bu, W. (2018) Compositional and mutational rate heterogeneity in mitochondrial genomes and its effect on the phylogenetic inferences of Cimicomorpha (Hemiptera: Heteroptera). BMC Genomics, 19 (1), 264. https: // doi. org / 10.1186 / s 12864 - 018 - 4650 - 9" type="journal article" year="2018">
|
||
Yang
|
||
<emphasis id="B911AA5DF00D1C00FE45FACB26D1FAFD" box="[422,478,1340,1366]" italics="true" pageId="11" pageNumber="454">et al.</emphasis>
|
||
, 2018
|
||
</bibRefCitation>
|
||
).
|
||
<taxonomicName id="4C650DCCF00D1C00FDD8FACA247DFAFD" authority="(Drake 1938)" authorityName="Drake" authorityYear="1938" baseAuthorityName="Drake" baseAuthorityYear="1938" box="[571,882,1340,1366]" class="Insecta" family="Tingidae" genus="Ammianus" kingdom="Animalia" order="Hemiptera" pageId="11" pageNumber="454" phylum="Arthropoda" rank="species" species="toi">
|
||
<emphasis id="B911AA5DF00D1C00FDD8FACA25D9FAFD" box="[571,726,1340,1366]" italics="true" pageId="11" pageNumber="454">Ammianus toi</emphasis>
|
||
(Drake 1938)
|
||
</taxonomicName>
|
||
and
|
||
<taxonomicName id="4C650DCCF00D1C00FC4BFACB2250FAFD" authority="(Distant 1909)" authorityName="Distant" authorityYear="1909" baseAuthorityName="Distant" baseAuthorityYear="1909" box="[936,1375,1340,1366]" class="Insecta" family="Tingidae" genus="Perissonemia" kingdom="Animalia" order="Hemiptera" pageId="11" pageNumber="454" phylum="Arthropoda" rank="species" species="borneenis">
|
||
<emphasis id="B911AA5DF00D1C00FC4BFACB23BAFAFD" box="[936,1205,1340,1366]" italics="true" pageId="11" pageNumber="454">Perissonemia borneenis</emphasis>
|
||
(Distant 1909)
|
||
</taxonomicName>
|
||
were also sister taxa in the all trees.
|
||
<taxonomicName id="4C650DCCF00D1C00FE0CFA962401FAD1" baseAuthorityName="Rodrigues" baseAuthorityYear="1981" box="[495,782,1376,1402]" class="Insecta" family="Tingidae" genus="Neoplerochila" kingdom="Animalia" order="Hemiptera" pageId="11" pageNumber="454" phylum="Arthropoda" rank="species" species="paliatseasi">
|
||
<emphasis id="B911AA5DF00D1C00FE0CFA962401FAD1" box="[495,782,1376,1402]" italics="true" pageId="11" pageNumber="454">Neoplerochila paliatseasi</emphasis>
|
||
</taxonomicName>
|
||
was most closely related to
|
||
<taxonomicName id="4C650DCCF00D1C00FBAFFA96224AFAD1" baseAuthorityName="Drake & Maa" baseAuthorityYear="1954" box="[1100,1349,1376,1402]" class="Insecta" family="Tingidae" genus="Agramma" kingdom="Animalia" order="Hemiptera" pageId="11" pageNumber="454" phylum="Arthropoda" rank="species" species="hupehanum">
|
||
<emphasis id="B911AA5DF00D1C00FBAFFA96224AFAD1" box="[1100,1349,1376,1402]" italics="true" pageId="11" pageNumber="454">Agramma hupehanum</emphasis>
|
||
</taxonomicName>
|
||
(BPP = 1, in all trees), in accordance to the high similarity between the
|
||
<emphasis id="B911AA5DF00D1C00FC8FFA722493FA35" box="[876,924,1412,1438]" italics="true" pageId="11" pageNumber="454">COI</emphasis>
|
||
sequences of the two species, which was the criteria we used for selecting
|
||
<taxonomicName id="4C650DCCF00D1C00FE03FA5E258DFA69" baseAuthorityName="Drake & Maa" baseAuthorityYear="1954" box="[480,642,1448,1474]" class="Insecta" family="Tingidae" genus="Agramma" kingdom="Animalia" order="Hemiptera" pageId="11" pageNumber="454" phylum="Arthropoda" rank="species" species="hupehanum">
|
||
<emphasis id="B911AA5DF00D1C00FE03FA5E258DFA69" box="[480,642,1448,1474]" italics="true" pageId="11" pageNumber="454">A. hupehanum</emphasis>
|
||
</taxonomicName>
|
||
as the reference mitogenome for the mapping and assembly of
|
||
<taxonomicName id="4C650DCCF00D1C00FAA4FA5F27EAFA4D" baseAuthorityName="Rodrigues" baseAuthorityYear="1981" class="Insecta" family="Tingidae" genus="Neoplerochila" kingdom="Animalia" order="Hemiptera" pageId="11" pageNumber="454" phylum="Arthropoda" rank="species" species="paliatseasi">
|
||
<emphasis id="B911AA5DF00D1C00FAA4FA5F27EAFA4D" italics="true" pageId="11" pageNumber="454">N. paliatseasi</emphasis>
|
||
</taxonomicName>
|
||
.
|
||
<taxonomicName id="4C650DCCF00D1C00FF11FA3A2504FA4D" authority="Stephens 1829" authorityName="Stephens" authorityYear="1829" box="[242,523,1484,1510]" class="Insecta" family="Tingidae" genus="Agramma" kingdom="Animalia" order="Hemiptera" pageId="11" pageNumber="454" phylum="Arthropoda" rank="genus">
|
||
<emphasis id="B911AA5DF00D1C00FF11FA3A266FFA4D" box="[242,352,1484,1510]" italics="true" pageId="11" pageNumber="454">Agramma</emphasis>
|
||
Stephens 1829
|
||
</taxonomicName>
|
||
is considered to be basal to
|
||
<taxonomicName id="4C650DCCF00D1C00FCA0FA3A249BFA4D" box="[835,916,1484,1510]" class="Insecta" family="Tingidae" kingdom="Animalia" order="Hemiptera" pageId="11" pageNumber="454" phylum="Arthropoda" rank="tribe" tribe="Tingini">Tingini</taxonomicName>
|
||
in traditional systematics works (see
|
||
<bibRefCitation id="EFF40BBEF00D1C00FAD5FA3A27DDF9A1" author="Peiricart, J." pageId="11" pageNumber="454" refId="ref11122" refString="Peiricart, J. (1983) HeimipteIres Tingidae euro-meiditerraneiens, Faune de France. Edited by P. Federation Francaise de Societes de Science Naturelles, Paris, 620 pp." type="book" year="1983">Peìricart, 1983</bibRefCitation>
|
||
), and
|
||
<taxonomicName id="4C650DCCF00D1C00FEF0FA0626BBF9A1" baseAuthorityName="Drake & Maa" baseAuthorityYear="1954" box="[275,436,1520,1546]" class="Insecta" family="Tingidae" genus="Agramma" kingdom="Animalia" order="Hemiptera" pageId="11" pageNumber="454" phylum="Arthropoda" rank="species" species="hupehanum">
|
||
<emphasis id="B911AA5DF00D1C00FEF0FA0626BBF9A1" box="[275,436,1520,1546]" italics="true" pageId="11" pageNumber="454">A. hupehanum</emphasis>
|
||
</taxonomicName>
|
||
was also recovered as basal in phylogenies based on shorter gene regions and morphological characters (
|
||
<bibRefCitation id="EFF40BBEF00D1C00FEA2F9E22404F985" author="Guilbert, E. & Damgaard, J. & D'Haese, C. A." box="[321,779,1556,1582]" pageId="11" pageNumber="454" pagination="431 - 441" refId="ref9782" refString="Guilbert, E., Damgaard, J. & D'Haese, C. A. (2014) Phylogeny of the lacebugs (Insecta: Heteroptera: Tingidae) using morphological and molecular data. Systematic Entomology, 39 (3), 431 - 441. https: // doi. org / 10.1111 / syen. 12045" type="journal article" year="2014">Guilbert, Damgaard and D’Haese, 2014</bibRefCitation>
|
||
). However, this was not the case in our study, similarly to
|
||
<bibRefCitation id="EFF40BBEF00D1C00FF74F9CE2634F9F9" author="Liu, Y. & Song, F. & Jiang, P. & Wilson, J. J. & Cai, W. & Li, H." box="[151,315,1592,1618]" pageId="11" pageNumber="454" pagination="135 - 144" refId="ref10665" refString="Liu, Y., Song, F., Jiang, P., Wilson, J. J., Cai, W. & Li, H. (2018) Compositional heterogeneity in true bug mitochondrial phylogenomics. Molecular Phylogenetics and Evolution, 118, 135 - 144. https: // doi. org / 10.1016 / j. ympev. 2017.09.025" type="journal article" year="2018">
|
||
Liu
|
||
<emphasis id="B911AA5DF00D1C00FF27F9CF27F4F9F9" box="[196,251,1592,1618]" italics="true" pageId="11" pageNumber="454">et al.</emphasis>
|
||
2018
|
||
</bibRefCitation>
|
||
, and the basal position in in the PCG12 and AA trees was occupied by
|
||
<taxonomicName id="4C650DCCF00D1C00FBA0F9CE2226F9F9" box="[1091,1321,1592,1618]" class="Insecta" family="Tingidae" genus="Pseudacysta" kingdom="Animalia" order="Hemiptera" pageId="11" pageNumber="460" phylum="Arthropoda" rank="species" species="perseae">
|
||
<emphasis id="B911AA5DF00D1C00FBA0F9CE23C0F9F9" box="[1091,1231,1592,1618]" italics="true" pageId="11" pageNumber="454">Pseudacysta</emphasis>
|
||
perseae
|
||
</taxonomicName>
|
||
(as in
|
||
<bibRefCitation id="EFF40BBEF00D1C00FA92F9CE2645F9DD" author="Kocher, A. & Guilbert, E. & Lhuillier, E. & Murienne, J." pageId="11" pageNumber="454" pagination="149 - 160" refId="ref10044" refString="Kocher, A., Guilbert, E., Lhuillier, E. & Murienne, J. (2015) Sequencing of the mitochondrial genome of the avocado lace bug Pseudacysta perseae (Heteroptera, Tingidae) using a genome skimming approach. Comptes Rendus Biologies, 338 (3), 149 - 160. https: // doi. org / 10.1038 / 33577" type="journal article" year="2015">
|
||
Kocher
|
||
<emphasis id="B911AA5DF00D1C00FF2DF9AB2609F9DD" box="[206,262,1628,1654]" italics="true" pageId="11" pageNumber="454">et al.</emphasis>
|
||
2015
|
||
</bibRefCitation>
|
||
). Several studies have presented reconstructions of the phylogeny of true bugs, including
|
||
<taxonomicName id="4C650DCCF00D1C00FAD0F9AA2297F9DD" box="[1331,1432,1628,1654]" class="Insecta" family="Tingidae" kingdom="Animalia" order="Hemiptera" pageId="11" pageNumber="454" phylum="Arthropoda" rank="family">Tingidae</taxonomicName>
|
||
, based on mitochondrial genomes (
|
||
<bibRefCitation id="EFF40BBEF00D1C00FDFAF976242CF931" author="Yang, W. & Yu, W. & Du, Y." box="[537,803,1664,1690]" pageId="11" pageNumber="454" pagination="27 - 40" refId="ref11724" refString="Yang, W., Yu, W. & Du, Y. (2013) The complete mitochondrial genome of the sycamore lace bug Corythucha ciliata (Hemiptera: Tingidae). Gene, 532 (1), 27 - 40. https: // doi. org / 10.1016 / j. gene. 2013.08.087" type="journal article" year="2013">Yang, Yu and Du, 2013</bibRefCitation>
|
||
;
|
||
<bibRefCitation id="EFF40BBEF00D1C00FCCCF9762304F931" author="Kocher, A. & Guilbert, E. & Lhuillier, E. & Murienne, J." box="[815,1035,1663,1690]" pageId="11" pageNumber="454" pagination="149 - 160" refId="ref10044" refString="Kocher, A., Guilbert, E., Lhuillier, E. & Murienne, J. (2015) Sequencing of the mitochondrial genome of the avocado lace bug Pseudacysta perseae (Heteroptera, Tingidae) using a genome skimming approach. Comptes Rendus Biologies, 338 (3), 149 - 160. https: // doi. org / 10.1038 / 33577" type="journal article" year="2015">
|
||
Kocher
|
||
<emphasis id="B911AA5DF00D1C00FC6AF97724CDF931" box="[905,962,1664,1690]" italics="true" pageId="11" pageNumber="454">et al.</emphasis>
|
||
, 2015
|
||
</bibRefCitation>
|
||
; H. Li
|
||
<emphasis id="B911AA5DF00D1C00FBB9F977239DF931" box="[1114,1170,1664,1690]" italics="true" pageId="11" pageNumber="454">et al.</emphasis>
|
||
, 2017;
|
||
<bibRefCitation id="EFF40BBEF00D1C00FB0BF9762298F931" author="Lin, A. & Zhao, X. & Li, X. & Song, N." box="[1256,1431,1664,1690]" pageId="11" pageNumber="454" pagination="897 - 899" refId="ref10531" refString="Lin, A., Zhao, X., Li, X. & Song, N. (2017) The complete mitochondrial genome of Corythucha marmorata (Hemiptera: Tingidae). Mitochondrial DNA Part B, 2 (2), 897 - 899. https: // doi. org / 10.1080 / 23802359.2017.1407712" type="journal article" year="2017">
|
||
Lin
|
||
<emphasis id="B911AA5DF00D1C00FAF5F9772241F931" box="[1302,1358,1664,1690]" italics="true" pageId="11" pageNumber="454">et al.</emphasis>
|
||
, 2017
|
||
</bibRefCitation>
|
||
; P. W. Li
|
||
<emphasis id="B911AA5DF00D1C00FF19F953263CF915" box="[250,307,1700,1726]" italics="true" pageId="11" pageNumber="454">et al.</emphasis>
|
||
, 2017;
|
||
<bibRefCitation id="EFF40BBEF00D1C00FE6AF9522534F915" author="Liu, Y. & Song, F. & Jiang, P. & Wilson, J. J. & Cai, W. & Li, H." box="[393,571,1700,1726]" pageId="11" pageNumber="454" pagination="135 - 144" refId="ref10665" refString="Liu, Y., Song, F., Jiang, P., Wilson, J. J., Cai, W. & Li, H. (2018) Compositional heterogeneity in true bug mitochondrial phylogenomics. Molecular Phylogenetics and Evolution, 118, 135 - 144. https: // doi. org / 10.1016 / j. ympev. 2017.09.025" type="journal article" year="2018">
|
||
Liu
|
||
<emphasis id="B911AA5DF00D1C00FE5BF95326FEF915" box="[440,497,1700,1726]" italics="true" pageId="11" pageNumber="454">et al.</emphasis>
|
||
, 2018
|
||
</bibRefCitation>
|
||
;
|
||
<bibRefCitation id="EFF40BBEF00D1C00FDA4F9522402F915" author="Yang, H. & Li, T. & Dang, K. & Bu, W." box="[583,781,1700,1726]" pageId="11" pageNumber="454" pagination="264" refId="ref11653" refString="Yang, H. Li, T., Dang, K. & Bu, W. (2018) Compositional and mutational rate heterogeneity in mitochondrial genomes and its effect on the phylogenetic inferences of Cimicomorpha (Hemiptera: Heteroptera). BMC Genomics, 19 (1), 264. https: // doi. org / 10.1186 / s 12864 - 018 - 4650 - 9" type="journal article" year="2018">
|
||
Yang
|
||
<emphasis id="B911AA5DF00D1C00FD6AF95325CDF915" box="[649,706,1700,1726]" italics="true" pageId="11" pageNumber="454">et al.</emphasis>
|
||
, 2018
|
||
</bibRefCitation>
|
||
). However, the relationships within
|
||
<taxonomicName id="4C650DCCF00D1C00FB46F9522207F915" box="[1189,1288,1700,1726]" class="Insecta" family="Tingidae" kingdom="Animalia" order="Hemiptera" pageId="11" pageNumber="454" phylum="Arthropoda" rank="family">Tingidae</taxonomicName>
|
||
could not be discussed as too few terminals for the family were included. Mitogenomic phylogenies have recovered different topologies compared to phylogenies based on shorter mitochondrial regions combined with morphological characters (
|
||
<bibRefCitation id="EFF40BBEF00D1C00FF7CF8E62569F881" author="Guilbert, E. & Damgaard, J. & D'Haese, C. A." box="[159,614,1808,1834]" pageId="11" pageNumber="454" pagination="431 - 441" refId="ref9782" refString="Guilbert, E., Damgaard, J. & D'Haese, C. A. (2014) Phylogeny of the lacebugs (Insecta: Heteroptera: Tingidae) using morphological and molecular data. Systematic Entomology, 39 (3), 431 - 441. https: // doi. org / 10.1111 / syen. 12045" type="journal article" year="2014">Guilbert, Damgaard and D’Haese, 2014</bibRefCitation>
|
||
), and the results have been contradictory. This could be explained by the large number of characters (up to 15,000 bp) generally analyzed in mitogenomic phylogenies on a few terminal taxa, in contrast with the analysis of a much higher number of taxa using shorter sequences (up to 5,000 bp) (
|
||
<bibRefCitation id="EFF40BBEF00D1C00FAD5F8AE26FFF83D" author="Guilbert, E. & Damgaard, J. & D'Haese, C. A." pageId="11" pageNumber="454" pagination="431 - 441" refId="ref9782" refString="Guilbert, E., Damgaard, J. & D'Haese, C. A. (2014) Phylogeny of the lacebugs (Insecta: Heteroptera: Tingidae) using morphological and molecular data. Systematic Entomology, 39 (3), 431 - 441. https: // doi. org / 10.1111 / syen. 12045" type="journal article" year="2014">Guilbert, Damgaard and D’Haese, 2014</bibRefCitation>
|
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). Additionally, the inconsistent recovery of the phylogeny of
|
||
<taxonomicName id="4C650DCCF00D1C00FB7DF88A220EF83D" box="[1182,1281,1916,1942]" class="Insecta" family="Tingidae" kingdom="Animalia" order="Hemiptera" pageId="11" pageNumber="454" phylum="Arthropoda" rank="family">Tingidae</taxonomicName>
|
||
could also be explained by the high sequence heterogeneity and the highest evolutionary rate characteristic of this family among Cimicomorpha, and the highest family-level nonsynonymous substitutions per non-synonymous site (Ka) among true bugs (
|
||
<bibRefCitation id="EFF40BBEF00A1C07FEEDFF6F26CEFF18" author="Liu, Y. & Song, F. & Jiang, P. & Wilson, J. J. & Cai, W. & Li, H." box="[270,449,153,179]" pageId="12" pageNumber="455" pagination="135 - 144" refId="ref10665" refString="Liu, Y., Song, F., Jiang, P., Wilson, J. J., Cai, W. & Li, H. (2018) Compositional heterogeneity in true bug mitochondrial phylogenomics. Molecular Phylogenetics and Evolution, 118, 135 - 144. https: // doi. org / 10.1016 / j. ympev. 2017.09.025" type="journal article" year="2018">
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Liu
|
||
<emphasis id="B911AA5DF00A1C07FEDDFF6C2679FF18" box="[318,374,153,179]" italics="true" pageId="12" pageNumber="455">et al.</emphasis>
|
||
, 2018
|
||
</bibRefCitation>
|
||
). In line with previous studies, our phylogenetic reconstruction confirmed that the order of the deeper nodes varies depending on the
|
||
<typeStatus id="54DEC8EDF00A1C07FD62FF4B25BEFF7C" box="[641,689,189,215]" pageId="12" pageNumber="455">type</typeStatus>
|
||
of analyses performed. In the future, it may be necessary to include nuclear DNA, as mitochondrial data does not produce consistent results.
|
||
</paragraph>
|
||
</subSubSection>
|
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</treatment>
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</document> |