788 lines
96 KiB
XML
788 lines
96 KiB
XML
<document id="B1998B4B0121C7252BD6C7D65104DBCE" ID-CLB-Dataset="3119" ID-DOI="10.11646/phytotaxa.527.3.7" ID-GBIF-Dataset="6cee74d5-d5f9-4ee7-9bd3-413d5ba4000b" ID-ISSN="1179-3163" ID-Zenodo-Dep="5751429" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_requiresApprovalFor="existingObjects,plazi" IM.taxonomicNames_approvedBy="felipe" checkinTime="1638521020096" checkinUser="plazi" docAuthor="Abdullin, Shamil R., Nikulin, Arthur Yu., Bagmet, Veronika B., Nikulin, Vyacheslav Yu. & Gontcharov, Andrey A." docDate="2021" docId="03884E68FFA7DD5F3FC8FD1BFDBF08F5" docLanguage="en" docName="phytotaxa.527.3.7.pdf" docOrigin="Phytotaxa 527 (3)" docStyle="DocumentStyle:96748F8F1B6C902996E134952A3A36B9.7:Phytotaxa.2014-.journal_article" docStyleId="96748F8F1B6C902996E134952A3A36B9" docStyleName="Phytotaxa.2014-.journal_article" docStyleVersion="7" docTitle="Aliterella vladivostokensis Sh. R. Abdullin, A. Yu. Nikulin, V. B. Bagmet et V. Yu. Nikulin 2021, sp. nov." docType="treatment" docVersion="9" lastPageNumber="227" masterDocId="FFB13610FFA5DD593F40FFAFFFD40D2E" masterDocTitle="New cyanobacterium Aliterella vladivostokensis sp. nov. (Aliterellaceae, Chroococcidiopsidales), isolated from temperate monsoon climate zone (Vladivostok, Russia)" masterLastPageNumber="233" masterPageNumber="221" pageNumber="223" updateTime="1699471828435" updateUser="ExternalLinkService" zenodo-license-figures="UNSPECIFIED" zenodo-license-treatments="UNSPECIFIED">
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<mods:title id="C035AF95FF75D6CEB85A8361D8A75E28">New cyanobacterium Aliterella vladivostokensis sp. nov. (Aliterellaceae, Chroococcidiopsidales), isolated from temperate monsoon climate zone (Vladivostok, Russia)</mods:title>
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<mods:namePart id="FA8309A369C23685932F0A525A4FC853">Abdullin, Shamil R.</mods:namePart>
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<mods:affiliation id="A2CAB7096E028651FDFB7EC1C5C81104">Laboratory of Botany, Federal Scientific Center of East Asia Terrestrial Biodiversity, Far Eastern Branch, Russian Academy of Sciences, 690022 Vladivostok, Russia & crplant @ mail. ru; https: // orcid. org / 0000 - 0002 - 6946 - 2321</mods:affiliation>
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<mods:nameIdentifier id="E957799006480262722CD114FA970C0E" type="email">crplant@mail.ru</mods:nameIdentifier>
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<mods:namePart id="00D0CFEC3FAF6A75EDBCBE2645C63F9C">Nikulin, Arthur Yu.</mods:namePart>
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<mods:affiliation id="30C208DC67892546D0E5FBF1059C354A">Laboratory of Botany, Federal Scientific Center of East Asia Terrestrial Biodiversity, Far Eastern Branch, Russian Academy of Sciences, 690022 Vladivostok, Russia & artyrozz @ mail. ru; https: // orcid. org / 0000 - 0001 - 6113 - 2136</mods:affiliation>
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<mods:nameIdentifier id="9507F36BFE6B8519DFDBC810C5234AF3" type="email">artyrozz@mail.ru</mods:nameIdentifier>
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<mods:namePart id="927CFDA7D642AE11D327380C5AF376BB">Bagmet, Veronika B.</mods:namePart>
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<mods:affiliation id="4F73EE56B3EAF49C0E1D224B7252A79D">Laboratory of Botany, Federal Scientific Center of East Asia Terrestrial Biodiversity, Far Eastern Branch, Russian Academy of Sciences, 690022 Vladivostok, Russia & chara 1989 @ yandex. ru; https: // orcid. org / 0000 - 0002 - 1193 - 7689</mods:affiliation>
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<mods:nameIdentifier id="16A5683CBD379BFCE888DD3434BC4ECB" type="email">chara1989@yandex.ru</mods:nameIdentifier>
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<mods:namePart id="AF395582BCA22719CA89C60948E803BA">Nikulin, Vyacheslav Yu.</mods:namePart>
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<mods:affiliation id="6DFCF535A2552C7D8243BE4D2437897A">Laboratory of Botany, Federal Scientific Center of East Asia Terrestrial Biodiversity, Far Eastern Branch, Russian Academy of Sciences, 690022 Vladivostok, Russia & nikulinvyacheslav @ gmail. com; https: // orcid. org / 0000 - 0002 - 6643 - 4325</mods:affiliation>
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<mods:nameIdentifier id="DC5849B65E685FC4EC04EBF7E8810746" type="email">nikulinvyacheslav@gmail.com</mods:nameIdentifier>
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<mods:namePart id="83A0BF0C3F5B50B387D3B203B3D043BB">Gontcharov, Andrey A.</mods:namePart>
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<mods:nameIdentifier id="283108B2CCDA4AFC22B34343BEC0C2B1" type="ORCID">0000-0003-2918-730X</mods:nameIdentifier>
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<mods:affiliation id="650079CA90CDFE5625C79337C01C29FF">Laboratory of Botany, Federal Scientific Center of East Asia Terrestrial Biodiversity, Far Eastern Branch, Russian Academy of Sciences, 690022 Vladivostok, Russia & gontcharov @ biosoil. ru; https: // orcid. org / 0000 - 0003 - 2918 - 730 X</mods:affiliation>
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<mods:nameIdentifier id="7E49A4472E247AFED9E0E3DEB62C1CB7" type="email">gontcharov@biosoil.ru</mods:nameIdentifier>
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<mods:title id="E0B3FE21BBB1C87013A2576524FE7E6D">Phytotaxa</mods:title>
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<mods:part id="CD40712D10FC639B406252AE41E83A17">
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<mods:date id="C41ADF5D9C13A83D382EB43EC8A3C1C9">2021</mods:date>
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<mods:number id="E55438920CA656F6380C897230316742">2021-12-03</mods:number>
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<mods:number id="0BFC4CD027D082DD60FC9B29DA969C4F">527</mods:number>
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<mods:identifier id="7651CCF02C2A56E521A5E451CE345F8E" type="DOI">10.11646/phytotaxa.527.3.7</mods:identifier>
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<treatment id="03884E68FFA7DD5F3FC8FD1BFDBF08F5" ID-DOI="http://doi.org/10.5281/zenodo.5753010" ID-GBIF-Taxon="190877054" ID-Zenodo-Dep="5753010" LSID="urn:lsid:plazi:treatment:03884E68FFA7DD5F3FC8FD1BFDBF08F5" httpUri="http://treatment.plazi.org/id/03884E68FFA7DD5F3FC8FD1BFDBF08F5" lastPageId="6" lastPageNumber="227" pageId="2" pageNumber="223">
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<paragraph id="8B9EFF7EFFA7DD5B3FC8FD1BFAC90FE0" blockId="2.[136,1309,692,719]" box="[136,1309,692,719]" pageId="2" pageNumber="223">
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<heading id="D0D64812FFA7DD5B3FC8FD1BFAC90FE0" box="[136,1309,692,719]" fontSize="11" level="2" pageId="2" pageNumber="223" reason="3">
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<taxonomicName id="4C2184FDFFA7DD5B3FC8FD1BFBB30FE0" authority="Sh.R. Abdullin, A.Yu. Nikulin, V.B. Bagmet et V.Yu. Nikulin" authorityName="Sh. R. Abdullin, A. Yu. Nikulin, V. B. Bagmet et V. Yu. Nikulin" authorityYear="2021" box="[136,1127,692,719]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="2" pageNumber="223" phylum="Cyanobacteria" rank="species" species="vladivostokensis" status="sp. nov.">
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<emphasis id="B955236CFFA7DD5B3FC8FD1BFE610FE1" bold="true" box="[136,437,692,719]" italics="true" pageId="2" pageNumber="223">Aliterella vladivostokensis</emphasis>
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Sh.R. Abdullin, A.Yu. Nikulin, V.B. Bagmet et V.Yu. Nikulin
|
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</taxonomicName>
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<emphasis id="B955236CFFA7DD5B3B2EFD1AFB160FE0" box="[1134,1218,693,718]" italics="true" pageId="2" pageNumber="223">
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<taxonomicNameLabel id="A2669E17FFA7DD5B3B2EFD1AFB160FE0" box="[1134,1218,693,718]" pageId="2" pageNumber="223" rank="species">sp. nov.</taxonomicNameLabel>
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</emphasis>
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(
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<figureCitation id="131AE3FBFFA7DD5B3B91FD1BFAC50FE0" box="[1233,1297,692,718]" captionStart="FIGURE 1" captionStartId="2.[136,229,1928,1950]" captionTargetBox="[151,1435,995,1904]" captionTargetId="figure-306@2.[151,1435,995,1904]" captionTargetPageId="2" captionText="FIGURE 1. Light micrographs of Aliterella vladivostokensis. A–C. Compact and irregular thallus composed of numerous irregular or rounded colonies or solitary cells with colorless and firm mucilaginous envelopes. D. Cylindrical or irregular cells. Scale bars: 10 μm." figureDoi="http://doi.org/10.5281/zenodo.5751431" httpUri="https://zenodo.org/record/5751431/files/figure.png" pageId="2" pageNumber="223">Fig. 1</figureCitation>
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)
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</heading>
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</paragraph>
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</subSubSection>
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<subSubSection id="C33BACF5FFA7DD5B3FC8FD53FBFB0EE4" pageId="2" pageNumber="223" type="description">
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<paragraph id="8B9EFF7EFFA7DD5B3FC8FD53FBFB0EE4" blockId="2.[136,1452,764,971]" pageId="2" pageNumber="223">
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<emphasis id="B955236CFFA7DD5B3FC8FD53FEC80E38" bold="true" box="[136,284,764,790]" pageId="2" pageNumber="223">Description:</emphasis>
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—Cells solitary, more commonly irregular or in rounded colonies with many cells (up to 32–64 or more), usually aggregated irregularly, extended (
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<figureCitation id="131AE3FBFFA7DD5B3D24FC8FFD3F0E14" box="[612,747,800,826]" captionStart="FIGURE 1" captionStartId="2.[136,229,1928,1950]" captionTargetBox="[151,1435,995,1904]" captionTargetId="figure-306@2.[151,1435,995,1904]" captionTargetPageId="2" captionText="FIGURE 1. Light micrographs of Aliterella vladivostokensis. A–C. Compact and irregular thallus composed of numerous irregular or rounded colonies or solitary cells with colorless and firm mucilaginous envelopes. D. Cylindrical or irregular cells. Scale bars: 10 μm." figureDoi="http://doi.org/10.5281/zenodo.5751431" httpUri="https://zenodo.org/record/5751431/files/figure.png" pageId="2" pageNumber="223">Fig. 1 A–C</figureCitation>
|
||
). Mucilage unstratified, colorless and firm, surrounding cells and colonies. Cells cylindrical 1.6–6.87 μm long, 1.17–5.85 μm wide, 1 to 1.75 × longer than wide (mean, 1.28 ×) (
|
||
<figureCitation id="131AE3FBFFA7DD5B3FD0FCC7FECD0EAC" box="[144,281,872,898]" captionStart="FIGURE 1" captionStartId="2.[136,229,1928,1950]" captionTargetBox="[151,1435,995,1904]" captionTargetId="figure-306@2.[151,1435,995,1904]" captionTargetPageId="2" captionText="FIGURE 1. Light micrographs of Aliterella vladivostokensis. A–C. Compact and irregular thallus composed of numerous irregular or rounded colonies or solitary cells with colorless and firm mucilaginous envelopes. D. Cylindrical or irregular cells. Scale bars: 10 μm." figureDoi="http://doi.org/10.5281/zenodo.5751431" httpUri="https://zenodo.org/record/5751431/files/figure.png" pageId="2" pageNumber="223">Fig. 1 C–D</figureCitation>
|
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). Cells easily squeezing from colonies with pressure (
|
||
<figureCitation id="131AE3FBFFA7DD5B3CC9FCC7FC3A0EAC" box="[905,1006,872,898]" captionStart="FIGURE 1" captionStartId="2.[136,229,1928,1950]" captionTargetBox="[151,1435,995,1904]" captionTargetId="figure-306@2.[151,1435,995,1904]" captionTargetPageId="2" captionText="FIGURE 1. Light micrographs of Aliterella vladivostokensis. A–C. Compact and irregular thallus composed of numerous irregular or rounded colonies or solitary cells with colorless and firm mucilaginous envelopes. D. Cylindrical or irregular cells. Scale bars: 10 μm." figureDoi="http://doi.org/10.5281/zenodo.5751431" httpUri="https://zenodo.org/record/5751431/files/figure.png" pageId="2" pageNumber="223">Fig. 1 C</figureCitation>
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). The chromatoplasm and centroplasm usually recognizable with light microscopy (
|
||
<figureCitation id="131AE3FBFFA7DD5B3D3DFC23FCD50E88" box="[637,769,908,934]" captionStart="FIGURE 1" captionStartId="2.[136,229,1928,1950]" captionTargetBox="[151,1435,995,1904]" captionTargetId="figure-306@2.[151,1435,995,1904]" captionTargetPageId="2" captionText="FIGURE 1. Light micrographs of Aliterella vladivostokensis. A–C. Compact and irregular thallus composed of numerous irregular or rounded colonies or solitary cells with colorless and firm mucilaginous envelopes. D. Cylindrical or irregular cells. Scale bars: 10 μm." figureDoi="http://doi.org/10.5281/zenodo.5751431" httpUri="https://zenodo.org/record/5751431/files/figure.png" pageId="2" pageNumber="223">Fig. 1 C–D</figureCitation>
|
||
). Cell contents blue-green, slightly granulated, or sometimes homogeneous. Reproduction by simple binary cell division in three or more planes.
|
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</paragraph>
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</subSubSection>
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<caption id="DF5EAFF6FFA7DD5B3FC8F827FA450AEC" ID-DOI="http://doi.org/10.5281/zenodo.5751431" ID-Zenodo-Dep="5751431" httpUri="https://zenodo.org/record/5751431/files/figure.png" pageId="2" pageNumber="223" startId="2.[136,229,1928,1950]" targetBox="[151,1435,995,1904]" targetPageId="2">
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<paragraph id="8B9EFF7EFFA7DD5B3FC8F827FA450AEC" blockId="2.[136,1451,1928,1986]" pageId="2" pageNumber="223">
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<emphasis id="B955236CFFA7DD5B3FC8F827FED40AB3" bold="true" box="[136,256,1928,1950]" pageId="2" pageNumber="223">FIGURE 1.</emphasis>
|
||
Light micrographs of
|
||
<taxonomicName id="4C2184FDFFA7DD5B3E9FF827FD0A0AB3" authorityName="Sh. R. Abdullin, A. Yu. Nikulin, V. B. Bagmet et V. Yu. Nikulin" authorityYear="2021" box="[479,734,1928,1949]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="2" pageNumber="223" phylum="Cyanobacteria" rank="species" species="vladivostokensis">
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<emphasis id="B955236CFFA7DD5B3E9FF827FD0A0AB3" box="[479,734,1928,1949]" italics="true" pageId="2" pageNumber="223">Aliterella vladivostokensis</emphasis>
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</taxonomicName>
|
||
. A–C. Compact and irregular thallus composed of numerous irregular or rounded colonies or solitary cells with colorless and firm mucilaginous envelopes. D. Cylindrical or irregular cells. Scale bars: 10 μm.
|
||
</paragraph>
|
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</caption>
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<subSubSection id="C33BACF5FFA6DD5A3FFDFF31FB420C66" pageId="3" pageNumber="224" type="materials_examined">
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<paragraph id="8B9EFF7EFFA6DD5A3FFDFF31FB6D0DF2" blockId="3.[136,1452,158,941]" pageId="3" pageNumber="224">
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<materialsCitation id="3B49F523FFA6DD5A3FFDFF31FB6D0DF2" ID-GBIF-Occurrence="3414063302" country="Russia" location="Russia" pageId="3" pageNumber="224" specimenCount="2" typeStatus="holotype">
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<emphasis id="B955236CFFA6DD5A3FFDFF31FEE00D96" bold="true" box="[189,308,158,184]" pageId="3" pageNumber="224">
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<typeStatus id="549A41DCFFA6DD5A3FFDFF31FEFA0D96" box="[189,302,158,184]" pageId="3" pageNumber="224" type="holotype">Holotype</typeStatus>
|
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:
|
||
</emphasis>
|
||
—The dried biomass of authentic strain was deposited to the Herbarium of the Federal Scientific Center of East Asia Terrestrial Biodiversity,
|
||
<collectingCountry id="F336BFEEFFA6DD5A3D66FF6DFDA50DF2" box="[550,625,194,220]" name="Russia" pageId="3" pageNumber="224">Russia</collectingCountry>
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||
(exsiccatum number VLA-CA-1212) as a
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<typeStatus id="549A41DCFFA6DD5A3B0FFF6DFB610DF2" box="[1103,1205,194,220]" pageId="3" pageNumber="224" type="holotype">holotype</typeStatus>
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.
|
||
</materialsCitation>
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</paragraph>
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<paragraph id="8B9EFF7EFFA6DD5A3FFDFF49FB420C66" blockId="3.[136,1452,158,941]" pageId="3" pageNumber="224">
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<emphasis id="B955236CFFA6DD5A3FFDFF49FE8A0C2E" bold="true" box="[189,350,230,256]" pageId="3" pageNumber="224">Type locality:</emphasis>
|
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—
|
||
<materialsCitation id="3B49F523FFA6DD5A3E3BFF49FB460C66" ID-GBIF-Occurrence="3414063301" collectingDate="2018-08-07" collectionCode="R" collectorName="Shamil R. Abdullin" country="Russia" latitude="43.17261" location="Federal Scientific Center of East Asia Terrestrial Biodiversity" longLatPrecision="1" longitude="131.93636" municipality="Laboratory of Botany" pageId="3" pageNumber="224" specimenCount="1" stateProvince="Primorskiy">
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<collectingCountry id="F336BFEEFFA6DD5A3E3BFF49FE350C2E" box="[379,481,230,256]" name="Russia" pageId="3" pageNumber="224">RUSSIA</collectingCountry>
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.
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<collectingRegion id="49E5319CFFA6DD5A3EAAFF49FD8B0C2E" box="[490,607,230,256]" country="Russia" name="Primorskiy" pageId="3" pageNumber="224">Primorsky</collectingRegion>
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<collectorName id="26D49AA8FFA6DD5A3D24FF49FD1C0C2E" box="[612,712,230,256]" pageId="3" pageNumber="224">Territory</collectorName>
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,
|
||
<collectorName id="26D49AA8FFA6DD5A3D91FF49FC890C2E" box="[721,861,230,256]" pageId="3" pageNumber="224">Vladivostok</collectorName>
|
||
,
|
||
<geoCoordinate id="EE1599B9FFA6DD5A3C26FF49FBD90C2F" box="[870,1037,230,257]" degrees="43" direction="north" minutes="10" orientation="latitude" pageId="3" pageNumber="224" precision="1" seconds="21.4" value="43.17261">43°10’21.4” N</geoCoordinate>
|
||
,
|
||
<geoCoordinate id="EE1599B9FFA6DD5A3B56FF49FB130C2F" box="[1046,1223,230,257]" degrees="131" direction="east" minutes="56" orientation="longitude" pageId="3" pageNumber="224" precision="1" seconds="10.9" value="131.93636">131°56’10.9” E</geoCoordinate>
|
||
, collected by
|
||
<emphasis id="B955236CFFA6DD5A3A1EFF49FEDE0C0A" italics="true" pageId="3" pageNumber="224">
|
||
<collectorName id="26D49AA8FFA6DD5A3A1EFF49FA780C2E" box="[1374,1452,230,256]" pageId="3" pageNumber="224">Shamil</collectorName>
|
||
<collectionCode id="ED3067BBFFA6DD5A3FC8FEA4FF480C0A" box="[136,156,267,292]" country="Chile" name="Departamento de Geologia, Universidad de Chile" pageId="3" pageNumber="224">R</collectionCode>
|
||
.
|
||
<collectorName id="26D49AA8FFA6DD5A3FEAFEA5FEDE0C0A" box="[170,266,266,292]" pageId="3" pageNumber="224">Abdullin</collectorName>
|
||
</emphasis>
|
||
on
|
||
<date id="FF9FD9BEFFA6DD5A3E79FEA5FE3B0C0A" box="[313,495,266,293]" pageId="3" pageNumber="224" value="2018-08-07">
|
||
<collectingDate id="EFDB2056FFA6DD5A3E79FEA5FE3B0C0A" box="[313,495,266,293]" pageId="3" pageNumber="224" value="2018-08-07">August 7, 2018</collectingDate>
|
||
</date>
|
||
. The authentic strain VCA-43 (Vl15-3) is available in the culture collection of the
|
||
<collectingMunicipality id="6BFA6504FFA6DD5A3FC8FE81FEA80C67" box="[136,380,302,329]" pageId="3" pageNumber="224">Laboratory of Botany</collectingMunicipality>
|
||
,
|
||
<location id="8EFEA9A5FFA6DD5A3EC7FE81FBED0C66" LSID="urn:lsid:plazi:treatment:03884E68FFA7DD5F3FC8FD1BFDBF08F5:8EFEA9A5FFA6DD5A3EC7FE81FBED0C66" box="[391,1081,302,329]" country="Russia" latitude="43.17261" longLatPrecision="1" longitude="131.93636" municipality="Laboratory of Botany" name="Federal Scientific Center of East Asia Terrestrial Biodiversity" pageId="3" pageNumber="224" stateProvince="Primorskiy">Federal Scientific Center of East Asia Terrestrial Biodiversity</location>
|
||
, Russia
|
||
</materialsCitation>
|
||
.
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="C33BACF5FFA6DD5A3FFDFEFDFBAD0C43" box="[189,1145,338,365]" pageId="3" pageNumber="224" type="biology_ecology">
|
||
<paragraph id="8B9EFF7EFFA6DD5A3FFDFEFDFBAD0C43" blockId="3.[136,1452,158,941]" box="[189,1145,338,365]" pageId="3" pageNumber="224">
|
||
<emphasis id="B955236CFFA6DD5A3FFDFEFDFEF70C42" bold="true" box="[189,291,338,364]" pageId="3" pageNumber="224">Habitat:</emphasis>
|
||
—This cyanobacteria occurred in aerophytic habitat (on the concrete fence).
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="C33BACF5FFA6DD5A3FFDFED9FA970CBE" box="[189,1347,374,401]" pageId="3" pageNumber="224" type="etymology">
|
||
<paragraph id="8B9EFF7EFFA6DD5A3FFDFED9FA970CBE" blockId="3.[136,1452,158,941]" box="[189,1347,374,401]" pageId="3" pageNumber="224">
|
||
<emphasis id="B955236CFFA6DD5A3FFDFED9FE9C0CBE" bold="true" box="[189,328,374,400]" pageId="3" pageNumber="224">Etymology:</emphasis>
|
||
—The species epithet ‘
|
||
<taxonomicName id="4C2184FDFFA6DD5A3D0BFED9FCD70CBE" authorityName="Sh. R. Abdullin, A. Yu. Nikulin, V. B. Bagmet et V. Yu. Nikulin" authorityYear="2021" box="[587,771,374,400]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="3" pageNumber="224" phylum="Cyanobacteria" rank="species" species="vladivostokensis">
|
||
<emphasis id="B955236CFFA6DD5A3D0BFED9FCD70CBE" box="[587,771,374,400]" italics="true" pageId="3" pageNumber="224">vladivostokensis</emphasis>
|
||
</taxonomicName>
|
||
’ is derived from the
|
||
<typeStatus id="549A41DCFFA6DD5A3CACFED8FBC80CBF" box="[1004,1052,375,401]" pageId="3" pageNumber="224">type</typeStatus>
|
||
locality Vladivostok City.
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="C33BACF5FFA6DD5F3FFDFE35FDBF08F5" lastPageId="6" lastPageNumber="227" pageId="3" pageNumber="224" type="discussion">
|
||
<paragraph id="8B9EFF7EFFA6DD5A3FFDFE35FC4D0F6A" blockId="3.[136,1452,158,941]" pageId="3" pageNumber="224">
|
||
<emphasis id="B955236CFFA6DD5A3FFDFE35FD080C9A" bold="true" box="[189,732,410,436]" pageId="3" pageNumber="224">Molecular phylogeny and sequence analyses:</emphasis>
|
||
—Results of the BLAST searches showed that the sequence of the 16S rRNA gene and internal transcribed spacer (ITS) region (1800 bp) in our strain was highly similar to those in other species of
|
||
<emphasis id="B955236CFFA6DD5A3E20FE4DFE1B0CD2" box="[352,463,482,508]" italics="true" pageId="3" pageNumber="224">
|
||
<taxonomicName id="4C2184FDFFA6DD5A3E20FE4DFE1F0CD2" authorityName="J. Rigonato & al. (2016:" authorityYear="2859" box="[352,459,482,508]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="3" pageNumber="224" phylum="Cyanobacteria" rank="genus">Aliterella</taxonomicName>
|
||
,
|
||
</emphasis>
|
||
several uncultured bacterial clones, and
|
||
<taxonomicName id="4C2184FDFFA6DD5A3CDEFE4DFBB60CD3" box="[926,1122,482,509]" class="Cyanophyceae" family="Chroococcaceae" genus="Synechocystis" kingdom="Bacteria" order="Chroococcales" pageId="3" pageNumber="224" phylum="Cyanobacteria" rank="species" species="undetermined">
|
||
<emphasis id="B955236CFFA6DD5A3CDEFE4DFBEE0CD2" box="[926,1082,482,508]" italics="true" pageId="3" pageNumber="224">Synechocystis</emphasis>
|
||
sp.
|
||
</taxonomicName>
|
||
PCC 7509 (> 94.5%). When only the ITS region was compared, the similarity to
|
||
<taxonomicName id="4C2184FDFFA6DD5A3D8FFDA9FCB90F0F" box="[719,877,518,545]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" kingdom="Bacteria" order="Cyanobacteriales" pageId="3" pageNumber="224" phylum="Cyanobacteria" rank="species" species="undetermined">
|
||
<emphasis id="B955236CFFA6DD5A3D8FFDA9FCEC0F0E" box="[719,824,518,544]" italics="true" pageId="3" pageNumber="224">Aliterella</emphasis>
|
||
spp.
|
||
</taxonomicName>
|
||
was just above 85%. Such relatively low similarity percentages suggested that we were likely dealing with a new species.
|
||
</paragraph>
|
||
<paragraph id="8B9EFF7EFFA6DD5A3FFDFDE1FE6D0F9E" blockId="3.[136,1452,158,941]" pageId="3" pageNumber="224">
|
||
Phylogenetic analyses (ML and BI) clearly indicated that
|
||
<taxonomicName id="4C2184FDFFA6DD5A3C25FDE0FB940F46" authorityName="Sh. R. Abdullin, A. Yu. Nikulin, V. B. Bagmet et V. Yu. Nikulin" authorityYear="2021" box="[869,1088,590,617]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="3" pageNumber="224" phylum="Cyanobacteria" rank="species" species="vladivostokensis">
|
||
<emphasis id="B955236CFFA6DD5A3C25FDE0FB940F46" box="[869,1088,590,617]" italics="true" pageId="3" pageNumber="224">A. vladivostokensis</emphasis>
|
||
</taxonomicName>
|
||
was a member of the strongly supported (99/1.00; BP/PP;
|
||
<figureCitation id="131AE3FBFFA6DD5A3E86FDDDFDDD0FA2" box="[454,521,626,652]" captionStart="FIGURE 2" captionStartId="4.[136,229,1991,2013]" captionTargetBox="[258,1330,190,1963]" captionTargetId="figure-27@4.[258,1330,190,1966]" captionTargetPageId="4" captionText="FIGURE 2. ML tree showing phylogenetic position of the new species A. vladivostokensis based on 16S rRNA gene sequence data (GTR+I+G model). Support [ML/BI, (BP) ≥ 50% and (PP) ≥ 0.95] are given above/below the branches. Branches with 100% BP, 1.00 PP and sequences obtained for this study are shown in boldface. Scale bar – substitutions per nucleotide position." figureDoi="http://doi.org/10.5281/zenodo.5751433" httpUri="https://zenodo.org/record/5751433/files/figure.png" pageId="3" pageNumber="224">Fig. 2</figureCitation>
|
||
)
|
||
<taxonomicName id="4C2184FDFFA6DD5A3D5AFDDDFD570FA2" authorityName="J. Rigonato & al. (2016:" authorityYear="2859" box="[538,643,626,652]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="3" pageNumber="224" phylum="Cyanobacteria" rank="genus">
|
||
<emphasis id="B955236CFFA6DD5A3D5AFDDDFD570FA2" box="[538,643,626,652]" italics="true" pageId="3" pageNumber="224">Aliterella</emphasis>
|
||
</taxonomicName>
|
||
generic clade. Branching pattern between the clade members remained largely unresolved (
|
||
<figureCitation id="131AE3FBFFA6DD5A3E27FD39FE780F9E" box="[359,428,662,688]" captionStart="FIGURE 2" captionStartId="4.[136,229,1991,2013]" captionTargetBox="[258,1330,190,1963]" captionTargetId="figure-27@4.[258,1330,190,1966]" captionTargetPageId="4" captionText="FIGURE 2. ML tree showing phylogenetic position of the new species A. vladivostokensis based on 16S rRNA gene sequence data (GTR+I+G model). Support [ML/BI, (BP) ≥ 50% and (PP) ≥ 0.95] are given above/below the branches. Branches with 100% BP, 1.00 PP and sequences obtained for this study are shown in boldface. Scale bar – substitutions per nucleotide position." figureDoi="http://doi.org/10.5281/zenodo.5751433" httpUri="https://zenodo.org/record/5751433/files/figure.png" pageId="3" pageNumber="224">Fig. 2</figureCitation>
|
||
).
|
||
</paragraph>
|
||
<paragraph id="8B9EFF7EFFA6DD5A3FFDFD14FA4A0E82" blockId="3.[136,1452,158,941]" pageId="3" pageNumber="224">
|
||
We observed the highest 16S rRNA sequence similarities based on
|
||
<emphasis id="B955236CFFA6DD5A3CE8FD14FC620FFA" box="[936,950,699,724]" italics="true" pageId="3" pageNumber="224">p</emphasis>
|
||
-distance analysis between our isolate and an uncultured bacterial clone (DQ532167) isolated from clean spacecraft assembly rooms where spacecrafts are assembled (99.5%;
|
||
<tableCitation id="C6A3CAC5FFA6DD5A3FAAFCADFEEA0E32" box="[234,318,770,796]" captionStart="TABLE 1" captionStartId="3.[136,224,988,1012]" captionTargetPageId="3" captionText="TABLE 1. 16S rRNA gene sequence similarities (100 x uncorrected p-distance) among four Aliterella strains and their relatives." httpUri="http://table.plazi.org/id/DF5EAFF6FFA6DD5A3FC8FC73FF3E0936" pageId="3" pageNumber="224" tableUuid="DF5EAFF6FFA6DD5A3FC8FC73FF3E0936">Table 1</tableCitation>
|
||
).
|
||
<taxonomicName id="4C2184FDFFA6DD5A3E19FCACFE380E32" authorityName="J. Rigonato & al. (2016:" authorityYear="2860" box="[345,492,771,797]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="3" pageNumber="224" phylum="Cyanobacteria" rank="species" species="antarctica">
|
||
<emphasis id="B955236CFFA6DD5A3E19FCACFE380E32" box="[345,492,771,797]" italics="true" pageId="3" pageNumber="224">A. antarctica</emphasis>
|
||
</taxonomicName>
|
||
(
|
||
<accessionNumber id="9472629DFFA6DD5A3EBCFCADFDA90E33" box="[508,637,770,797]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/KU291459" pageId="3" pageNumber="224">KU291459</accessionNumber>
|
||
) and
|
||
<taxonomicName id="4C2184FDFFA6DD5A3DFFFCACFCBB0E32" authorityName="Q. Zhang et L. R. Song" authorityYear="2018" box="[703,879,770,797]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="3" pageNumber="224" phylum="Cyanobacteria" rank="species" species="shaanxiensis">
|
||
<emphasis id="B955236CFFA6DD5A3DFFFCACFCBB0E32" box="[703,879,770,797]" italics="true" pageId="3" pageNumber="224">A. shaanxiensis</emphasis>
|
||
</taxonomicName>
|
||
(
|
||
<accessionNumber id="9472629DFFA6DD5A3CC0FCADFBD00E32" box="[896,1028,770,796]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/MH023997" pageId="3" pageNumber="224">MH023997</accessionNumber>
|
||
) were the most similar to each other among described
|
||
<taxonomicName id="4C2184FDFFA6DD5A3E0BFC89FDD90E6E" box="[331,525,806,832]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" kingdom="Bacteria" order="Cyanobacteriales" pageId="3" pageNumber="224" phylum="Cyanobacteria" rank="species" species="undetermined">
|
||
<emphasis id="B955236CFFA6DD5A3E0BFC89FE600E6E" box="[331,436,806,832]" italics="true" pageId="3" pageNumber="224">Aliterella</emphasis>
|
||
species
|
||
</taxonomicName>
|
||
, (99.1%). Since no ITS sequences were available for the uncultured bacterial clones resolved as members of the
|
||
<taxonomicName id="4C2184FDFFA6DD5A3EFEFCE5FDF30E4A" authorityName="J. Rigonato & al. (2016:" authorityYear="2859" box="[446,551,842,868]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="3" pageNumber="224" phylum="Cyanobacteria" rank="genus">
|
||
<emphasis id="B955236CFFA6DD5A3EFEFCE5FDF30E4A" box="[446,551,842,868]" italics="true" pageId="3" pageNumber="224">Aliterella</emphasis>
|
||
</taxonomicName>
|
||
clade (5 accessions), we only compared the percentage of sequence dissimilarity between aligned 16S–23S ITS regions for the described taxa and
|
||
<taxonomicName id="4C2184FDFFA6DD5A3CC0FCC1FB910EA7" box="[896,1093,878,905]" class="Cyanophyceae" family="Chroococcaceae" genus="Synechocystis" kingdom="Bacteria" order="Chroococcales" pageId="3" pageNumber="224" phylum="Cyanobacteria" rank="species" species="undetermined">
|
||
<emphasis id="B955236CFFA6DD5A3CC0FCC1FBC80EA6" box="[896,1052,878,904]" italics="true" pageId="3" pageNumber="224">Synechocystis</emphasis>
|
||
sp.
|
||
</taxonomicName>
|
||
PCC 7509 (6 accessions). The dissimilarity varied from 6.4% to 17.5% (11.6%–17.5% between
|
||
<taxonomicName id="4C2184FDFFA6DD5A3C25FC3CFBE80E82" authorityName="Sh. R. Abdullin, A. Yu. Nikulin, V. B. Bagmet et V. Yu. Nikulin" authorityYear="2021" box="[869,1084,914,941]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="3" pageNumber="224" phylum="Cyanobacteria" rank="species" species="vladivostokensis">
|
||
<emphasis id="B955236CFFA6DD5A3C25FC3CFBE80E82" box="[869,1084,914,941]" italics="true" pageId="3" pageNumber="224">A. vladivostokensis</emphasis>
|
||
</taxonomicName>
|
||
and the other species;
|
||
<tableCitation id="C6A3CAC5FFA6DD5A3A7BFC3DFA450E82" box="[1339,1425,914,940]" captionStart="TABLE 2" captionStartId="5.[136,224,159,183]" captionTargetPageId="5" captionText="TABLE 2. Percent dissimilarity (100 x uncorrected p-distance) among aligned 16S–23S ITS regions of Aliterella species." httpUri="http://table.plazi.org/id/DF5EAFF6FFA0DD5C3FC8FF30FA490D99" pageId="3" pageNumber="224" tableUuid="DF5EAFF6FFA0DD5C3FC8FF30FA490D99">Table 2</tableCitation>
|
||
).
|
||
</paragraph>
|
||
<caption id="DF5EAFF6FFA6DD5A3FC8FC73FF3E0936" ID-Table-UUID="DF5EAFF6FFA6DD5A3FC8FC73FF3E0936" httpUri="http://table.plazi.org/id/DF5EAFF6FFA6DD5A3FC8FC73FF3E0936" pageId="3" pageNumber="224" startId="3.[136,224,988,1012]" targetBox="[147,1433,1065,1916]" targetIsTable="true" targetPageId="3">
|
||
<paragraph id="8B9EFF7EFFA6DD5A3FC8FC73FF3E0936" blockId="3.[136,1451,988,1048]" pageId="3" pageNumber="224">
|
||
<emphasis id="B955236CFFA6DD5A3FC8FC73FF2A0EDA" bold="true" box="[136,254,988,1012]" pageId="3" pageNumber="224">TABLE 1.</emphasis>
|
||
16S rRNA gene sequence similarities (100 x uncorrected
|
||
<emphasis id="B955236CFFA6DD5A3CC5FC72FC460EDA" box="[901,914,989,1012]" italics="true" pageId="3" pageNumber="224">p</emphasis>
|
||
-distance) among four
|
||
<taxonomicName id="4C2184FDFFA6DD5A3BCEFC73FB260EDA" authorityName="J. Rigonato & al. (2016:" authorityYear="2859" box="[1166,1266,988,1012]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="3" pageNumber="224" phylum="Cyanobacteria" rank="genus">
|
||
<emphasis id="B955236CFFA6DD5A3BCEFC73FB260EDA" box="[1166,1266,988,1012]" italics="true" pageId="3" pageNumber="224">Aliterella</emphasis>
|
||
</taxonomicName>
|
||
strains and their relatives.
|
||
</paragraph>
|
||
</caption>
|
||
<paragraph id="8B9EFF7EFFA6DD5A3E9EFB86FA430A52" pageId="3" pageNumber="224">
|
||
<table id="F9210DDEFFA622A63FD3FB86FA4D0A52" box="[147,1433,1065,1916]" gridcols="11" gridrows="22" pageId="3" pageNumber="224">
|
||
<tr id="3511FD3CFFA622A63FD3FB86FA4D0910" box="[147,1433,1065,1086]" gridrow="0" pageId="3" pageNumber="224" rowspan-0="1">
|
||
<th id="76C09440FFA622A63E88FB86FDD20910" box="[456,518,1065,1086]" gridcol="1" gridrow="0" pageId="3" pageNumber="224">
|
||
<emphasis id="B955236CFFA6DD5A3E9EFB86FE240910" bold="true" box="[478,496,1065,1086]" pageId="3" pageNumber="224">1.</emphasis>
|
||
</th>
|
||
<th id="76C09440FFA622A63D78FB86FDA30910" box="[568,631,1065,1086]" gridcol="2" gridrow="0" pageId="3" pageNumber="224">
|
||
<emphasis id="B955236CFFA6DD5A3D0EFB86FDB40910" bold="true" box="[590,608,1065,1086]" pageId="3" pageNumber="224">2.</emphasis>
|
||
</th>
|
||
<th id="76C09440FFA622A63DE4FB86FD360910" box="[676,738,1065,1086]" gridcol="3" gridrow="0" pageId="3" pageNumber="224">
|
||
<emphasis id="B955236CFFA6DD5A3DFAFB86FD180910" bold="true" box="[698,716,1065,1086]" pageId="3" pageNumber="224">3.</emphasis>
|
||
</th>
|
||
<th id="76C09440FFA622A63C4DFB86FC980910" box="[781,844,1065,1086]" gridcol="4" gridrow="0" pageId="3" pageNumber="224">
|
||
<emphasis id="B955236CFFA6DD5A3C63FB86FCE20910" bold="true" box="[803,822,1065,1086]" pageId="3" pageNumber="224">4.</emphasis>
|
||
</th>
|
||
<th id="76C09440FFA622A63C32FB86FC640910" box="[882,944,1065,1086]" gridcol="5" gridrow="0" pageId="3" pageNumber="224">
|
||
<emphasis id="B955236CFFA6DD5A3CC8FB86FC4E0910" bold="true" box="[904,922,1065,1086]" pageId="3" pageNumber="224">5.</emphasis>
|
||
</th>
|
||
<th id="76C09440FFA622A63C94FB86FBC60910" box="[980,1042,1065,1086]" gridcol="6" gridrow="0" pageId="3" pageNumber="224">
|
||
<emphasis id="B955236CFFA6DD5A3CAAFB86FC280910" bold="true" box="[1002,1020,1065,1086]" pageId="3" pageNumber="224">6.</emphasis>
|
||
</th>
|
||
<th id="76C09440FFA622A63B75FB86FBA00910" box="[1077,1140,1065,1086]" gridcol="7" gridrow="0" pageId="3" pageNumber="224">
|
||
<emphasis id="B955236CFFA6DD5A3B0BFB86FB8A0910" bold="true" box="[1099,1118,1065,1086]" pageId="3" pageNumber="224">7.</emphasis>
|
||
</th>
|
||
<th id="76C09440FFA622A63BD7FB86FB020910" box="[1175,1238,1065,1086]" gridcol="8" gridrow="0" pageId="3" pageNumber="224">
|
||
<emphasis id="B955236CFFA6DD5A3BEDFB86FB6B0910" bold="true" box="[1197,1215,1065,1086]" pageId="3" pageNumber="224">8.</emphasis>
|
||
</th>
|
||
<th id="76C09440FFA622A63BB9FB86FAE30910" box="[1273,1335,1065,1086]" gridcol="9" gridrow="0" pageId="3" pageNumber="224">
|
||
<emphasis id="B955236CFFA6DD5A3A4FFB86FAF50910" bold="true" box="[1295,1313,1065,1086]" pageId="3" pageNumber="224">9.</emphasis>
|
||
</th>
|
||
<th id="76C09440FFA622A63A1BFB86FA4D0910" box="[1371,1433,1065,1086]" gridcol="10" gridrow="0" pageId="3" pageNumber="224">
|
||
<emphasis id="B955236CFFA6DD5A3A2BFB86FA5D0910" bold="true" box="[1387,1417,1065,1086]" pageId="3" pageNumber="224">10.</emphasis>
|
||
</th>
|
||
</tr>
|
||
<tr id="3511FD3CFFA622A63FD3FBFFFA4D0948" box="[147,1433,1104,1126]" gridrow="1" pageId="3" pageNumber="224" rowspan-1="1" rowspan-10="1" rowspan-2="1" rowspan-3="1" rowspan-4="1" rowspan-5="1" rowspan-6="1" rowspan-7="1" rowspan-8="1" rowspan-9="1">
|
||
<th id="76C09440FFA622A63FD3FBFFFE4C0948" box="[147,408,1104,1126]" gridcol="0" gridrow="1" pageId="3" pageNumber="224">
|
||
1.
|
||
<emphasis id="B955236CFFA6DD5A3FEBFBFEFE510948" box="[171,389,1104,1126]" italics="true" pageId="3" pageNumber="224">
|
||
<taxonomicName id="4C2184FDFFA6DD5A3FEBFBFEFEB7094B" authority="Abdullin & Nikulin & Bagmet & Nikulin & Gontcharov, 2021" authorityName="Abdullin & Nikulin & Bagmet & Nikulin & Gontcharov" authorityYear="2021" box="[171,355,1104,1126]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="3" pageNumber="224" phylum="Cyanobacteria" rank="species" species="vladivostokensis" status="sp. nov.">A. vladivostokensis</taxonomicName>
|
||
<taxonomicNameLabel id="A2669E17FFA6DD5A3E29FBFEFE510948" box="[361,389,1105,1126]" pageId="3" pageNumber="224" rank="species">sp.</taxonomicNameLabel>
|
||
</emphasis>
|
||
</th>
|
||
</tr>
|
||
<tr id="3511FD3CFFA622A63FD3FBDBFA4D09A4" box="[147,1433,1140,1162]" gridrow="2" pageId="3" pageNumber="224" rowspan-1="1" rowspan-10="1" rowspan-2="1" rowspan-3="1" rowspan-4="1" rowspan-5="1" rowspan-6="1" rowspan-7="1" rowspan-8="1" rowspan-9="1">
|
||
<th id="76C09440FFA622A63FD3FBDBFE4C09A4" box="[147,408,1140,1162]" gridcol="0" gridrow="2" pageId="3" pageNumber="224">
|
||
<emphasis id="B955236CFFA6DD5A3FD3FBDAFF6F09A4" box="[147,187,1141,1162]" italics="true" pageId="3" pageNumber="224">
|
||
<taxonomicNameLabel id="A2669E17FFA6DD5A3FD3FBDAFF6F09A4" box="[147,187,1141,1162]" pageId="3" pageNumber="224" rank="species">nov.</taxonomicNameLabel>
|
||
</emphasis>
|
||
<accessionNumber id="9472629DFFA6DD5A3F80FBDBFEE009A4" box="[192,308,1140,1162]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/MW646373" pageId="3" pageNumber="224" type="EnaNcbi">MW646373</accessionNumber>
|
||
</th>
|
||
</tr>
|
||
<tr id="3511FD3CFFA622A63FD3FB33FA4D099F" box="[147,1433,1180,1201]" gridrow="3" pageId="3" pageNumber="224" rowspan-10="1" rowspan-2="1" rowspan-3="1" rowspan-4="1" rowspan-5="1" rowspan-6="1" rowspan-7="1" rowspan-8="1" rowspan-9="1">
|
||
<th id="76C09440FFA622A63FD3FB33FE4C099F" box="[147,408,1180,1201]" gridcol="0" gridrow="3" pageId="3" pageNumber="224">
|
||
2.
|
||
<taxonomicName id="4C2184FDFFA6DD5A3FEBFB33FE99099F" authorityName="P. Jung, Schermer, Mikhailyuk et Budel (2020:" authorityYear="1222" box="[171,333,1180,1201]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="3" pageNumber="224" phylum="Cyanobacteria" rank="species" species="chasmolithica">
|
||
<emphasis id="B955236CFFA6DD5A3FEBFB33FE99099F" box="[171,333,1180,1201]" italics="true" pageId="3" pageNumber="224">A. chasmolithica</emphasis>
|
||
</taxonomicName>
|
||
</th>
|
||
<td id="76C09440FFA622A63E88FB33FDD2099F" box="[456,518,1180,1201]" gridcol="1" gridrow="3" pageId="3" pageNumber="224">98.8%</td>
|
||
</tr>
|
||
<tr id="3511FD3CFFA622A63FD3FB6FFA4D09F8" box="[147,1433,1216,1238]" gridrow="4" pageId="3" pageNumber="224" rowspan-10="1" rowspan-2="1" rowspan-3="1" rowspan-4="1" rowspan-5="1" rowspan-6="1" rowspan-7="1" rowspan-8="1" rowspan-9="1">
|
||
<th id="76C09440FFA622A63FD3FB6FFE4C09F8" box="[147,408,1216,1238]" gridcol="0" gridrow="4" pageId="3" pageNumber="224">
|
||
<accessionNumber id="9472629DFFA6DD5A3FD3FB6FFED609F8" box="[147,258,1216,1238]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/MN243145" pageId="3" pageNumber="224">MN243145</accessionNumber>
|
||
</th>
|
||
<td id="76C09440FFA622A63E88FB6FFDD209F8" box="[456,518,1216,1238]" gridcol="1" gridrow="4" pageId="3" pageNumber="224">(±0.3)</td>
|
||
</tr>
|
||
<tr id="3511FD3CFFA622A63FD3FB48FA4D080F" box="[147,1433,1255,1313]" gridrow="5" pageId="3" pageNumber="224" rowspan-10="1" rowspan-3="1" rowspan-4="1" rowspan-5="1" rowspan-6="1" rowspan-7="1" rowspan-8="1" rowspan-9="1">
|
||
<th id="76C09440FFA622A63FD3FB48FE4C080F" box="[147,408,1255,1313]" gridcol="0" gridrow="5" pageId="3" pageNumber="224">
|
||
3.
|
||
<taxonomicName id="4C2184FDFFA6DD5A3FEBFB56FE850821" authority="KU" authorityName="KU" box="[171,337,1273,1295]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="3" pageNumber="224" phylum="Cyanobacteria" rank="species" species="antarctica">
|
||
<emphasis id="B955236CFFA6DD5A3FEBFB56FEFC0821" box="[171,296,1273,1295]" italics="true" pageId="3" pageNumber="224">A. antarctica</emphasis>
|
||
<accessionNumber id="9472629DFFA6DD5A3E6EFB56FE850821" box="[302,337,1273,1295]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/KU291459" pageId="3" pageNumber="224">KU</accessionNumber>
|
||
</taxonomicName>
|
||
291459
|
||
</th>
|
||
<td id="76C09440FFA622A63E88FB48FDD2080F" box="[456,518,1255,1313]" gridcol="1" gridrow="5" pageId="3" pageNumber="224">99.1% (±0.3)</td>
|
||
<td id="76C09440FFA622A63D78FB48FDA3080F" box="[568,631,1255,1313]" gridcol="2" gridrow="5" pageId="3" pageNumber="224">96.5% (±0.4)</td>
|
||
</tr>
|
||
<tr id="3511FD3CFFA622A63FD3FA9DFA4D0866" box="[147,1433,1330,1352]" gridrow="6" pageId="3" pageNumber="224" rowspan-10="1" rowspan-4="1" rowspan-5="1" rowspan-6="1" rowspan-7="1" rowspan-8="1" rowspan-9="1">
|
||
<th id="76C09440FFA622A63FD3FA9DFE4C0866" box="[147,408,1330,1352]" gridcol="0" gridrow="6" pageId="3" pageNumber="224">
|
||
4.
|
||
<taxonomicName id="4C2184FDFFA6DD5A3FEBFA9CFE950866" authority="NZ" authorityName="NZ" box="[171,321,1330,1352]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="3" pageNumber="224" phylum="Cyanobacteria" rank="species" species="atlantica">
|
||
<emphasis id="B955236CFFA6DD5A3FEBFA9CFECF0869" box="[171,283,1330,1352]" italics="true" pageId="3" pageNumber="224">A. atlantica</emphasis>
|
||
NZ
|
||
</taxonomicName>
|
||
_
|
||
</th>
|
||
<td id="76C09440FFA622A63E88FA9DFDD20866" box="[456,518,1330,1352]" gridcol="1" gridrow="6" pageId="3" pageNumber="224">98.5%</td>
|
||
<td id="76C09440FFA622A63D78FA9DFDA30866" box="[568,631,1330,1352]" gridcol="2" gridrow="6" pageId="3" pageNumber="224">93.7%</td>
|
||
<td id="76C09440FFA622A63DE4FA9DFD360866" box="[676,738,1330,1352]" gridcol="3" gridrow="6" pageId="3" pageNumber="224">97.4%</td>
|
||
</tr>
|
||
<tr id="3511FD3CFFA622A63FD3FAF9FA4D0843" box="[147,1433,1366,1389]" gridrow="7" pageId="3" pageNumber="224" rowspan-10="1" rowspan-4="1" rowspan-5="1" rowspan-6="1" rowspan-7="1" rowspan-8="1" rowspan-9="1">
|
||
<th id="76C09440FFA622A63FD3FAF9FE4C0843" box="[147,408,1366,1389]" gridcol="0" gridrow="7" pageId="3" pageNumber="224">JYON01000056</th>
|
||
<td id="76C09440FFA622A63E88FAF9FDD20843" box="[456,518,1366,1389]" gridcol="1" gridrow="7" pageId="3" pageNumber="224">(±0.3)</td>
|
||
<td id="76C09440FFA622A63D78FAF9FDA30843" box="[568,631,1366,1389]" gridcol="2" gridrow="7" pageId="3" pageNumber="224">(±0.4)</td>
|
||
<td id="76C09440FFA622A63DE4FAF9FD360843" box="[676,738,1366,1389]" gridcol="3" gridrow="7" pageId="3" pageNumber="224">(±0.4)</td>
|
||
</tr>
|
||
<tr id="3511FD3CFFA622A63FD3FAD1FA4D08BA" box="[147,1433,1406,1428]" gridrow="8" pageId="3" pageNumber="224" rowspan-10="1" rowspan-5="1" rowspan-6="1" rowspan-7="1" rowspan-8="1" rowspan-9="1">
|
||
<th id="76C09440FFA622A63FD3FAD1FE4C08BA" box="[147,408,1406,1428]" gridcol="0" gridrow="8" pageId="3" pageNumber="224">
|
||
5.
|
||
<taxonomicName id="4C2184FDFFA6DD5A3FEBFAD1FE9508BD" authorityName="Q. Zhang et L. R. Song" authorityYear="2018" box="[171,321,1406,1427]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="3" pageNumber="224" phylum="Cyanobacteria" rank="species" species="shaanxiensis">
|
||
<emphasis id="B955236CFFA6DD5A3FEBFAD1FE9508BD" box="[171,321,1406,1427]" italics="true" pageId="3" pageNumber="224">A. shaanxiensis</emphasis>
|
||
</taxonomicName>
|
||
</th>
|
||
<td id="76C09440FFA622A63E88FAD1FDD208BA" box="[456,518,1406,1428]" gridcol="1" gridrow="8" pageId="3" pageNumber="224">99.1%</td>
|
||
<td id="76C09440FFA622A63D78FAD1FDA308BA" box="[568,631,1406,1428]" gridcol="2" gridrow="8" pageId="3" pageNumber="224">97.2%</td>
|
||
<td id="76C09440FFA622A63DE4FAD1FD3608BA" box="[676,738,1406,1428]" gridcol="3" gridrow="8" pageId="3" pageNumber="224">98.2%</td>
|
||
<td id="76C09440FFA622A63C4DFAD1FC9808BA" box="[781,844,1406,1428]" gridcol="4" gridrow="8" pageId="3" pageNumber="224">98.3%</td>
|
||
</tr>
|
||
<tr id="3511FD3CFFA622A63FD3FA0DFA4D0896" box="[147,1433,1442,1464]" gridrow="9" pageId="3" pageNumber="224" rowspan-10="1" rowspan-5="1" rowspan-6="1" rowspan-7="1" rowspan-8="1" rowspan-9="1">
|
||
<th id="76C09440FFA622A63FD3FA0DFE4C0896" box="[147,408,1442,1464]" gridcol="0" gridrow="9" pageId="3" pageNumber="224">
|
||
<accessionNumber id="9472629DFFA6DD5A3FD3FA0DFED60899" box="[147,258,1442,1463]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/MH023997" pageId="3" pageNumber="224">MH023997</accessionNumber>
|
||
</th>
|
||
<td id="76C09440FFA622A63E88FA0DFDD20896" box="[456,518,1442,1464]" gridcol="1" gridrow="9" pageId="3" pageNumber="224">(±0.3)</td>
|
||
<td id="76C09440FFA622A63D78FA0DFDA30896" box="[568,631,1442,1464]" gridcol="2" gridrow="9" pageId="3" pageNumber="224">(±0.3)</td>
|
||
<td id="76C09440FFA622A63DE4FA0DFD360896" box="[676,738,1442,1464]" gridcol="3" gridrow="9" pageId="3" pageNumber="224">(±0.4)</td>
|
||
<td id="76C09440FFA622A63C4DFA0DFC980896" box="[781,844,1442,1464]" gridcol="4" gridrow="9" pageId="3" pageNumber="224">(±0.3)</td>
|
||
</tr>
|
||
<tr id="3511FD3CFFA622A63FD3FA66FA4D08F1" box="[147,1433,1481,1503]" gridrow="10" pageId="3" pageNumber="224" rowspan-10="1" rowspan-6="1" rowspan-7="1" rowspan-8="1" rowspan-9="1">
|
||
<th id="76C09440FFA622A63FD3FA66FE4C08F1" box="[147,408,1481,1503]" gridcol="0" gridrow="10" pageId="3" pageNumber="224">6. Uncultured bacterium</th>
|
||
<td id="76C09440FFA622A63E88FA66FDD208F1" box="[456,518,1481,1503]" gridcol="1" gridrow="10" pageId="3" pageNumber="224">98.5%</td>
|
||
<td id="76C09440FFA622A63D78FA66FDA308F1" box="[568,631,1481,1503]" gridcol="2" gridrow="10" pageId="3" pageNumber="224">97.6%</td>
|
||
<td id="76C09440FFA622A63DE4FA66FD3608F1" box="[676,738,1481,1503]" gridcol="3" gridrow="10" pageId="3" pageNumber="224">98.2%</td>
|
||
<td id="76C09440FFA622A63C4DFA66FC9808F1" box="[781,844,1481,1503]" gridcol="4" gridrow="10" pageId="3" pageNumber="224">97.9%</td>
|
||
<td id="76C09440FFA622A63C32FA66FC6408F1" box="[882,944,1481,1503]" gridcol="5" gridrow="10" pageId="3" pageNumber="224">99.0%</td>
|
||
</tr>
|
||
<tr id="3511FD3CFFA622A63FD3FA42FA4D0B2D" box="[147,1433,1517,1539]" gridrow="11" pageId="3" pageNumber="224" rowspan-10="1" rowspan-6="1" rowspan-7="1" rowspan-8="1" rowspan-9="1">
|
||
<th id="76C09440FFA622A63FD3FA42FE4C0B2D" box="[147,408,1517,1539]" gridcol="0" gridrow="11" pageId="3" pageNumber="224">KF037769</th>
|
||
<td id="76C09440FFA622A63E88FA42FDD20B2D" box="[456,518,1517,1539]" gridcol="1" gridrow="11" pageId="3" pageNumber="224">(±0.3)</td>
|
||
<td id="76C09440FFA622A63D78FA42FDA30B2D" box="[568,631,1517,1539]" gridcol="2" gridrow="11" pageId="3" pageNumber="224">(±0.4)</td>
|
||
<td id="76C09440FFA622A63DE4FA42FD360B2D" box="[676,738,1517,1539]" gridcol="3" gridrow="11" pageId="3" pageNumber="224">(±0.4)</td>
|
||
<td id="76C09440FFA622A63C4DFA42FC980B2D" box="[781,844,1517,1539]" gridcol="4" gridrow="11" pageId="3" pageNumber="224">(±0.4)</td>
|
||
<td id="76C09440FFA622A63C32FA42FC640B2D" box="[882,944,1517,1539]" gridcol="5" gridrow="11" pageId="3" pageNumber="224">(±0.3)</td>
|
||
</tr>
|
||
<tr id="3511FD3CFFA622A63FD3F9BBFA4D0B04" box="[147,1433,1556,1578]" gridrow="12" pageId="3" pageNumber="224" rowspan-10="1" rowspan-7="1" rowspan-8="1" rowspan-9="1">
|
||
<th id="76C09440FFA622A63FD3F9BBFE4C0B04" box="[147,408,1556,1578]" gridcol="0" gridrow="12" pageId="3" pageNumber="224">7. Uncultured bacterium</th>
|
||
<td id="76C09440FFA622A63E88F9BBFDD20B04" box="[456,518,1556,1578]" gridcol="1" gridrow="12" pageId="3" pageNumber="224">99.5%</td>
|
||
<td id="76C09440FFA622A63D78F9BBFDA30B04" box="[568,631,1556,1578]" gridcol="2" gridrow="12" pageId="3" pageNumber="224">98.7%</td>
|
||
<td id="76C09440FFA622A63DE4F9BBFD360B04" box="[676,738,1556,1578]" gridcol="3" gridrow="12" pageId="3" pageNumber="224">98.3%</td>
|
||
<td id="76C09440FFA622A63C4DF9BBFC980B04" box="[781,844,1556,1578]" gridcol="4" gridrow="12" pageId="3" pageNumber="224">98.0%</td>
|
||
<td id="76C09440FFA622A63C32F9BBFC640B04" box="[882,944,1556,1578]" gridcol="5" gridrow="12" pageId="3" pageNumber="224">98.5%</td>
|
||
<td id="76C09440FFA622A63C94F9BBFBC60B04" box="[980,1042,1556,1578]" gridcol="6" gridrow="12" pageId="3" pageNumber="224">98.3%</td>
|
||
</tr>
|
||
<tr id="3511FD3CFFA622A63FD3F997FA4D0B61" box="[147,1433,1592,1615]" gridrow="13" pageId="3" pageNumber="224" rowspan-10="1" rowspan-7="1" rowspan-8="1" rowspan-9="1">
|
||
<th id="76C09440FFA622A63FD3F997FE4C0B61" box="[147,408,1592,1615]" gridcol="0" gridrow="13" pageId="3" pageNumber="224">DQ532167</th>
|
||
<td id="76C09440FFA622A63E88F997FDD20B61" box="[456,518,1592,1615]" gridcol="1" gridrow="13" pageId="3" pageNumber="224">(±0.2)</td>
|
||
<td id="76C09440FFA622A63D78F997FDA30B61" box="[568,631,1592,1615]" gridcol="2" gridrow="13" pageId="3" pageNumber="224">(±0.3)</td>
|
||
<td id="76C09440FFA622A63DE4F997FD360B61" box="[676,738,1592,1615]" gridcol="3" gridrow="13" pageId="3" pageNumber="224">(±0.3)</td>
|
||
<td id="76C09440FFA622A63C4DF997FC980B61" box="[781,844,1592,1615]" gridcol="4" gridrow="13" pageId="3" pageNumber="224">(±0.4)</td>
|
||
<td id="76C09440FFA622A63C32F997FC640B61" box="[882,944,1592,1615]" gridcol="5" gridrow="13" pageId="3" pageNumber="224">(±0.3)</td>
|
||
<td id="76C09440FFA622A63C94F997FBC60B61" box="[980,1042,1592,1615]" gridcol="6" gridrow="13" pageId="3" pageNumber="224">(±0.4)</td>
|
||
</tr>
|
||
<tr id="3511FD3CFFA622A63FD3F9CFFA4D0B58" box="[147,1433,1632,1654]" gridrow="14" pageId="3" pageNumber="224" rowspan-10="1" rowspan-8="1" rowspan-9="1">
|
||
<th id="76C09440FFA622A63FD3F9CFFE4C0B58" box="[147,408,1632,1654]" gridcol="0" gridrow="14" pageId="3" pageNumber="224">8. Uncultured bacterium</th>
|
||
<td id="76C09440FFA622A63E88F9CFFDD20B58" box="[456,518,1632,1654]" gridcol="1" gridrow="14" pageId="3" pageNumber="224">99.2%</td>
|
||
<td id="76C09440FFA622A63D78F9CFFDA30B58" box="[568,631,1632,1654]" gridcol="2" gridrow="14" pageId="3" pageNumber="224">98.8%</td>
|
||
<td id="76C09440FFA622A63DE4F9CFFD360B58" box="[676,738,1632,1654]" gridcol="3" gridrow="14" pageId="3" pageNumber="224">98.3%</td>
|
||
<td id="76C09440FFA622A63C4DF9CFFC980B58" box="[781,844,1632,1654]" gridcol="4" gridrow="14" pageId="3" pageNumber="224">97.9%</td>
|
||
<td id="76C09440FFA622A63C32F9CFFC640B58" box="[882,944,1632,1654]" gridcol="5" gridrow="14" pageId="3" pageNumber="224">98.5%</td>
|
||
<td id="76C09440FFA622A63C94F9CFFBC60B58" box="[980,1042,1632,1654]" gridcol="6" gridrow="14" pageId="3" pageNumber="224">98.3%</td>
|
||
<td id="76C09440FFA622A63B75F9CFFBA00B58" box="[1077,1140,1632,1654]" gridcol="7" gridrow="14" pageId="3" pageNumber="224">99.8%</td>
|
||
</tr>
|
||
<tr id="3511FD3CFFA622A63FD3F92BFA4D0BB4" box="[147,1433,1668,1690]" gridrow="15" pageId="3" pageNumber="224" rowspan-10="1" rowspan-8="1" rowspan-9="1">
|
||
<th id="76C09440FFA622A63FD3F92BFE4C0BB4" box="[147,408,1668,1690]" gridcol="0" gridrow="15" pageId="3" pageNumber="224">KF037911</th>
|
||
<td id="76C09440FFA622A63E88F92BFDD20BB4" box="[456,518,1668,1690]" gridcol="1" gridrow="15" pageId="3" pageNumber="224">(±0.2)</td>
|
||
<td id="76C09440FFA622A63D78F92BFDA30BB4" box="[568,631,1668,1690]" gridcol="2" gridrow="15" pageId="3" pageNumber="224">(±0.3)</td>
|
||
<td id="76C09440FFA622A63DE4F92BFD360BB4" box="[676,738,1668,1690]" gridcol="3" gridrow="15" pageId="3" pageNumber="224">(±0.3)</td>
|
||
<td id="76C09440FFA622A63C4DF92BFC980BB4" box="[781,844,1668,1690]" gridcol="4" gridrow="15" pageId="3" pageNumber="224">(±0.4)</td>
|
||
<td id="76C09440FFA622A63C32F92BFC640BB4" box="[882,944,1668,1690]" gridcol="5" gridrow="15" pageId="3" pageNumber="224">(±0.3)</td>
|
||
<td id="76C09440FFA622A63C94F92BFBC60BB4" box="[980,1042,1668,1690]" gridcol="6" gridrow="15" pageId="3" pageNumber="224">(±0.3)</td>
|
||
<td id="76C09440FFA622A63B75F92BFBA00BB4" box="[1077,1140,1668,1690]" gridcol="7" gridrow="15" pageId="3" pageNumber="224">(±0.2)</td>
|
||
</tr>
|
||
<tr id="3511FD3CFFA622A63FD3F904FA4D0BEF" box="[147,1433,1707,1729]" gridrow="16" pageId="3" pageNumber="224" rowspan-10="1" rowspan-9="1">
|
||
<th id="76C09440FFA622A63FD3F904FE4C0BEF" box="[147,408,1707,1729]" gridcol="0" gridrow="16" pageId="3" pageNumber="224">9. Uncultured bacterium</th>
|
||
<td id="76C09440FFA622A63E88F904FDD20BEF" box="[456,518,1707,1729]" gridcol="1" gridrow="16" pageId="3" pageNumber="224">99.4%</td>
|
||
<td id="76C09440FFA622A63D78F904FDA30BEF" box="[568,631,1707,1729]" gridcol="2" gridrow="16" pageId="3" pageNumber="224">98.5%</td>
|
||
<td id="76C09440FFA622A63DE4F904FD360BEF" box="[676,738,1707,1729]" gridcol="3" gridrow="16" pageId="3" pageNumber="224">98.2%</td>
|
||
<td id="76C09440FFA622A63C4DF904FC980BEF" box="[781,844,1707,1729]" gridcol="4" gridrow="16" pageId="3" pageNumber="224">97.7%</td>
|
||
<td id="76C09440FFA622A63C32F904FC640BEF" box="[882,944,1707,1729]" gridcol="5" gridrow="16" pageId="3" pageNumber="224">98.3%</td>
|
||
<td id="76C09440FFA622A63C94F904FBC60BEF" box="[980,1042,1707,1729]" gridcol="6" gridrow="16" pageId="3" pageNumber="224">98.2%</td>
|
||
<td id="76C09440FFA622A63B75F904FBA00BEF" box="[1077,1140,1707,1729]" gridcol="7" gridrow="16" pageId="3" pageNumber="224">99.7%</td>
|
||
<td id="76C09440FFA622A63BD7F904FB020BEF" box="[1175,1238,1707,1729]" gridcol="8" gridrow="16" pageId="3" pageNumber="224">99.7%</td>
|
||
</tr>
|
||
<tr id="3511FD3CFFA622A63FD3F960FA4D0BCB" box="[147,1433,1743,1765]" gridrow="17" pageId="3" pageNumber="224" rowspan-10="1" rowspan-9="1">
|
||
<th id="76C09440FFA622A63FD3F960FE4C0BCB" box="[147,408,1743,1765]" gridcol="0" gridrow="17" pageId="3" pageNumber="224">AB696285</th>
|
||
<td id="76C09440FFA622A63E88F960FDD20BCB" box="[456,518,1743,1765]" gridcol="1" gridrow="17" pageId="3" pageNumber="224">(±0.2)</td>
|
||
<td id="76C09440FFA622A63D78F960FDA30BCB" box="[568,631,1743,1765]" gridcol="2" gridrow="17" pageId="3" pageNumber="224">(±0.3)</td>
|
||
<td id="76C09440FFA622A63DE4F960FD360BCB" box="[676,738,1743,1765]" gridcol="3" gridrow="17" pageId="3" pageNumber="224">(±0.4)</td>
|
||
<td id="76C09440FFA622A63C4DF960FC980BCB" box="[781,844,1743,1765]" gridcol="4" gridrow="17" pageId="3" pageNumber="224">(±0.4)</td>
|
||
<td id="76C09440FFA622A63C32F960FC640BCB" box="[882,944,1743,1765]" gridcol="5" gridrow="17" pageId="3" pageNumber="224">(±0.3)</td>
|
||
<td id="76C09440FFA622A63C94F960FBC60BCB" box="[980,1042,1743,1765]" gridcol="6" gridrow="17" pageId="3" pageNumber="224">(±0.3)</td>
|
||
<td id="76C09440FFA622A63B75F960FBA00BCB" box="[1077,1140,1743,1765]" gridcol="7" gridrow="17" pageId="3" pageNumber="224">(±0.1)</td>
|
||
<td id="76C09440FFA622A63BD7F960FB020BCB" box="[1175,1238,1743,1765]" gridcol="8" gridrow="17" pageId="3" pageNumber="224">(±0.2)</td>
|
||
</tr>
|
||
<tr id="3511FD3CFFA622A63FD3F959FA4D0A22" box="[147,1433,1782,1804]" gridrow="18" pageId="3" pageNumber="224" rowspan-10="1">
|
||
<th id="76C09440FFA622A63FD3F959FE4C0A22" box="[147,408,1782,1804]" gridcol="0" gridrow="18" pageId="3" pageNumber="224">10. Uncultured bacterium</th>
|
||
<td id="76C09440FFA622A63E88F959FDD20A22" box="[456,518,1782,1804]" gridcol="1" gridrow="18" pageId="3" pageNumber="224">99.3%</td>
|
||
<td id="76C09440FFA622A63D78F959FDA30A22" box="[568,631,1782,1804]" gridcol="2" gridrow="18" pageId="3" pageNumber="224">98.7%</td>
|
||
<td id="76C09440FFA622A63DE4F959FD360A22" box="[676,738,1782,1804]" gridcol="3" gridrow="18" pageId="3" pageNumber="224">97.7%</td>
|
||
<td id="76C09440FFA622A63C4DF959FC980A22" box="[781,844,1782,1804]" gridcol="4" gridrow="18" pageId="3" pageNumber="224">97.4%</td>
|
||
<td id="76C09440FFA622A63C32F959FC640A22" box="[882,944,1782,1804]" gridcol="5" gridrow="18" pageId="3" pageNumber="224">98.4%</td>
|
||
<td id="76C09440FFA622A63C94F959FBC60A22" box="[980,1042,1782,1804]" gridcol="6" gridrow="18" pageId="3" pageNumber="224">98.0%</td>
|
||
<td id="76C09440FFA622A63B75F959FBA00A22" box="[1077,1140,1782,1804]" gridcol="7" gridrow="18" pageId="3" pageNumber="224">99.6%</td>
|
||
<td id="76C09440FFA622A63BD7F959FB020A22" box="[1175,1238,1782,1804]" gridcol="8" gridrow="18" pageId="3" pageNumber="224">99.6%</td>
|
||
<td id="76C09440FFA622A63BB9F959FAE30A22" box="[1273,1335,1782,1804]" gridcol="9" gridrow="18" pageId="3" pageNumber="224">99.9%</td>
|
||
</tr>
|
||
<tr id="3511FD3CFFA622A63FD3F8B5FA4D0A1F" box="[147,1433,1818,1841]" gridrow="19" pageId="3" pageNumber="224" rowspan-10="1">
|
||
<th id="76C09440FFA622A63FD3F8B5FE4C0A1F" box="[147,408,1818,1841]" gridcol="0" gridrow="19" pageId="3" pageNumber="224">AB696383</th>
|
||
<td id="76C09440FFA622A63E88F8B5FDD20A1F" box="[456,518,1818,1841]" gridcol="1" gridrow="19" pageId="3" pageNumber="224">(±0.2)</td>
|
||
<td id="76C09440FFA622A63D78F8B5FDA30A1F" box="[568,631,1818,1841]" gridcol="2" gridrow="19" pageId="3" pageNumber="224">(±0.3)</td>
|
||
<td id="76C09440FFA622A63DE4F8B5FD360A1F" box="[676,738,1818,1841]" gridcol="3" gridrow="19" pageId="3" pageNumber="224">(±0.4)</td>
|
||
<td id="76C09440FFA622A63C4DF8B5FC980A1F" box="[781,844,1818,1841]" gridcol="4" gridrow="19" pageId="3" pageNumber="224">(±0.4)</td>
|
||
<td id="76C09440FFA622A63C32F8B5FC640A1F" box="[882,944,1818,1841]" gridcol="5" gridrow="19" pageId="3" pageNumber="224">(±0.3)</td>
|
||
<td id="76C09440FFA622A63C94F8B5FBC60A1F" box="[980,1042,1818,1841]" gridcol="6" gridrow="19" pageId="3" pageNumber="224">(±0.4)</td>
|
||
<td id="76C09440FFA622A63B75F8B5FBA00A1F" box="[1077,1140,1818,1841]" gridcol="7" gridrow="19" pageId="3" pageNumber="224">(±0.2)</td>
|
||
<td id="76C09440FFA622A63BD7F8B5FB020A1F" box="[1175,1238,1818,1841]" gridcol="8" gridrow="19" pageId="3" pageNumber="224">(±0.2)</td>
|
||
<td id="76C09440FFA622A63BB9F8B5FAE30A1F" box="[1273,1335,1818,1841]" gridcol="9" gridrow="19" pageId="3" pageNumber="224">(±0.1)</td>
|
||
</tr>
|
||
<tr id="3511FD3CFFA622A63FD3F8EDFA4D0A76" box="[147,1433,1858,1880]" gridrow="20" pageId="3" pageNumber="224">
|
||
<th id="76C09440FFA622A63FD3F8EDFE4C0A76" box="[147,408,1858,1880]" gridcol="0" gridrow="20" pageId="3" pageNumber="224">
|
||
11.
|
||
<taxonomicName id="4C2184FDFFA6DD5A3FF7F8EDFE8A0A79" box="[183,350,1858,1879]" class="Cyanophyceae" family="Chroococcaceae" genus="Synechocystis" kingdom="Bacteria" order="Chroococcales" pageId="3" pageNumber="224" phylum="Cyanobacteria" rank="species" species="undetermined">
|
||
<emphasis id="B955236CFFA6DD5A3FF7F8EDFEE80A79" box="[183,316,1858,1879]" italics="true" pageId="3" pageNumber="224">Synechocystis</emphasis>
|
||
sp.
|
||
</taxonomicName>
|
||
PCC
|
||
</th>
|
||
<td id="76C09440FFA622A63E88F8EDFDD20A76" box="[456,518,1858,1880]" gridcol="1" gridrow="20" pageId="3" pageNumber="224">97.2%</td>
|
||
<td id="76C09440FFA622A63D78F8EDFDA30A76" box="[568,631,1858,1880]" gridcol="2" gridrow="20" pageId="3" pageNumber="224">96.5%</td>
|
||
<td id="76C09440FFA622A63DE4F8EDFD360A76" box="[676,738,1858,1880]" gridcol="3" gridrow="20" pageId="3" pageNumber="224">96.3%</td>
|
||
<td id="76C09440FFA622A63C4DF8EDFC980A76" box="[781,844,1858,1880]" gridcol="4" gridrow="20" pageId="3" pageNumber="224">96.2%</td>
|
||
<td id="76C09440FFA622A63C32F8EDFC640A76" box="[882,944,1858,1880]" gridcol="5" gridrow="20" pageId="3" pageNumber="224">96.4%</td>
|
||
<td id="76C09440FFA622A63C94F8EDFBC60A76" box="[980,1042,1858,1880]" gridcol="6" gridrow="20" pageId="3" pageNumber="224">96.0%</td>
|
||
<td id="76C09440FFA622A63B75F8EDFBA00A76" box="[1077,1140,1858,1880]" gridcol="7" gridrow="20" pageId="3" pageNumber="224">97.0%</td>
|
||
<td id="76C09440FFA622A63BD7F8EDFB020A76" box="[1175,1238,1858,1880]" gridcol="8" gridrow="20" pageId="3" pageNumber="224">96.8%</td>
|
||
<td id="76C09440FFA622A63BB9F8EDFAE30A76" box="[1273,1335,1858,1880]" gridcol="9" gridrow="20" pageId="3" pageNumber="224">97.0%</td>
|
||
<td id="76C09440FFA622A63A1BF8EDFA4D0A76" box="[1371,1433,1858,1880]" gridcol="10" gridrow="20" pageId="3" pageNumber="224">96.8%</td>
|
||
</tr>
|
||
<tr id="3511FD3CFFA622A63FD3F8C9FA4D0A52" box="[147,1433,1894,1916]" gridrow="21" pageId="3" pageNumber="224">
|
||
<th id="76C09440FFA622A63FD3F8C9FE4C0A52" box="[147,408,1894,1916]" gridcol="0" gridrow="21" pageId="3" pageNumber="224">7509</th>
|
||
<td id="76C09440FFA622A63E88F8C9FDD20A52" box="[456,518,1894,1916]" gridcol="1" gridrow="21" pageId="3" pageNumber="224">(±0.4)</td>
|
||
<td id="76C09440FFA622A63D78F8C9FDA30A52" box="[568,631,1894,1916]" gridcol="2" gridrow="21" pageId="3" pageNumber="224">(±0.4)</td>
|
||
<td id="76C09440FFA622A63DE4F8C9FD360A52" box="[676,738,1894,1916]" gridcol="3" gridrow="21" pageId="3" pageNumber="224">(±0.4)</td>
|
||
<td id="76C09440FFA622A63C4DF8C9FC980A52" box="[781,844,1894,1916]" gridcol="4" gridrow="21" pageId="3" pageNumber="224">(±0.5)</td>
|
||
<td id="76C09440FFA622A63C32F8C9FC640A52" box="[882,944,1894,1916]" gridcol="5" gridrow="21" pageId="3" pageNumber="224">(±0.5)</td>
|
||
<td id="76C09440FFA622A63C94F8C9FBC60A52" box="[980,1042,1894,1916]" gridcol="6" gridrow="21" pageId="3" pageNumber="224">(±0.4)</td>
|
||
<td id="76C09440FFA622A63B75F8C9FBA00A52" box="[1077,1140,1894,1916]" gridcol="7" gridrow="21" pageId="3" pageNumber="224">(±0.4)</td>
|
||
<td id="76C09440FFA622A63BD7F8C9FB020A52" box="[1175,1238,1894,1916]" gridcol="8" gridrow="21" pageId="3" pageNumber="224">(±0.4)</td>
|
||
<td id="76C09440FFA622A63BB9F8C9FAE30A52" box="[1273,1335,1894,1916]" gridcol="9" gridrow="21" pageId="3" pageNumber="224">(±0.4)</td>
|
||
<td id="76C09440FFA622A63A1BF8C9FA4D0A52" box="[1371,1433,1894,1916]" gridcol="10" gridrow="21" pageId="3" pageNumber="224">(±0.4)</td>
|
||
</tr>
|
||
</table>
|
||
</paragraph>
|
||
<caption id="DF5EAFF6FFA1DD5D3FC8F868FB7C050B" ID-DOI="http://doi.org/10.5281/zenodo.5751433" ID-Zenodo-Dep="5751433" httpUri="https://zenodo.org/record/5751433/files/figure.png" pageId="4" pageNumber="225" startId="4.[136,229,1991,2013]" targetBox="[258,1330,190,1963]" targetPageId="4">
|
||
<paragraph id="8B9EFF7EFFA1DD5D3FC8F868FB7C050B" blockId="4.[136,1452,1991,2085]" pageId="4" pageNumber="225">
|
||
<emphasis id="B955236CFFA1DD5D3FC8F868FED40AF2" bold="true" box="[136,256,1991,2013]" pageId="4" pageNumber="225">FIGURE 2.</emphasis>
|
||
ML tree showing phylogenetic position of the new species
|
||
<taxonomicName id="4C2184FDFFA1DD5D3C18F868FBC70AF2" authorityName="Abdullin & Nikulin & Bagmet & Nikulin & Gontcharov" authorityYear="2021" box="[856,1043,1991,2012]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="4" pageNumber="225" phylum="Cyanobacteria" rank="species" species="vladivostokensis">
|
||
<emphasis id="B955236CFFA1DD5D3C18F868FBC70AF2" box="[856,1043,1991,2012]" italics="true" pageId="4" pageNumber="225">A. vladivostokensis</emphasis>
|
||
</taxonomicName>
|
||
based on 16S rRNA gene sequence data (GTR+I+G model). Support [ML/BI, (BP) ≥ 50% and (PP) ≥ 0.95] are given above/below the branches. Branches with 100% BP, 1.00 PP and sequences obtained for this study are shown in boldface. Scale bar – substitutions per nucleotide position.
|
||
</paragraph>
|
||
</caption>
|
||
<caption id="DF5EAFF6FFA0DD5C3FC8FF30FA490D99" ID-Table-UUID="DF5EAFF6FFA0DD5C3FC8FF30FA490D99" box="[136,1437,159,184]" httpUri="http://table.plazi.org/id/DF5EAFF6FFA0DD5C3FC8FF30FA490D99" pageId="5" pageNumber="226" startId="5.[136,224,159,183]" targetBox="[147,1419,201,459]" targetIsTable="true" targetPageId="5">
|
||
<paragraph id="8B9EFF7EFFA0DD5C3FC8FF30FA490D99" blockId="5.[136,1437,159,184]" box="[136,1437,159,184]" pageId="5" pageNumber="226">
|
||
<emphasis id="B955236CFFA0DD5C3FC8FF30FF2F0D99" bold="true" box="[136,251,159,183]" pageId="5" pageNumber="226">TABLE 2.</emphasis>
|
||
Percent dissimilarity (100 x uncorrected
|
||
<emphasis id="B955236CFFA0DD5C3DF5FF0FFD160D99" box="[693,706,160,183]" italics="true" pageId="5" pageNumber="226">p</emphasis>
|
||
-distance) among aligned 16S–23S ITS regions of
|
||
<taxonomicName id="4C2184FDFFA0DD5C3B9EFF30FA490D99" box="[1246,1437,159,183]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" kingdom="Bacteria" order="Cyanobacteriales" pageId="5" pageNumber="226" phylum="Cyanobacteria" rank="species" species="undetermined">
|
||
<emphasis id="B955236CFFA0DD5C3B9EFF30FA960D99" box="[1246,1346,159,183]" italics="true" pageId="5" pageNumber="226">Aliterella</emphasis>
|
||
species.
|
||
</taxonomicName>
|
||
</paragraph>
|
||
</caption>
|
||
<paragraph id="8B9EFF7EFFA0DD5C3D3DFF66FA5F0CE5" pageId="5" pageNumber="226">
|
||
<table id="F9210DDEFFA022A63FD3FF66FA5F0CE5" box="[147,1419,201,459]" gridcols="6" gridrows="7" pageId="5" pageNumber="226">
|
||
<tr id="3511FD3CFFA022A63FD3FF66FA5F0DF1" box="[147,1419,201,223]" gridrow="0" pageId="5" pageNumber="226" rowspan-0="1">
|
||
<th id="76C09440FFA022A63D11FF66FD680DF1" box="[593,700,201,223]" gridcol="1" gridrow="0" pageId="5" pageNumber="226">1.</th>
|
||
<th id="76C09440FFA022A63C4BFF66FCA20DF1" box="[779,886,201,223]" gridcol="2" gridrow="0" pageId="5" pageNumber="226">2.</th>
|
||
<th id="76C09440FFA022A63CFEFF66FBFD0DF1" box="[958,1065,201,223]" gridcol="3" gridrow="0" pageId="5" pageNumber="226">3.</th>
|
||
<th id="76C09440FFA022A63B2FFF66FB0E0DF1" box="[1135,1242,201,223]" gridcol="4" gridrow="0" pageId="5" pageNumber="226">4.</th>
|
||
<th id="76C09440FFA022A63A60FF66FA5F0DF1" box="[1312,1419,201,223]" gridcol="5" gridrow="0" pageId="5" pageNumber="226">5</th>
|
||
</tr>
|
||
<tr id="3511FD3CFFA022A63FD3FF5FFA5F0C28" box="[147,1419,240,262]" gridrow="1" pageId="5" pageNumber="226">
|
||
<th id="76C09440FFA022A63FD3FF5FFA5F0C28" box="[147,1419,240,262]" colspan="6" colspanRight="5" gridcol="0" gridrow="1" pageId="5" pageNumber="226">
|
||
1.
|
||
<emphasis id="B955236CFFA0DD5C3FEBFF5FFE670C28" box="[171,435,240,262]" italics="true" pageId="5" pageNumber="226">
|
||
<taxonomicName id="4C2184FDFFA0DD5C3FEBFF5FFEB70C2B" authority="Abdullin & Nikulin & Bagmet & Nikulin & Gontcharov, 2021" authorityName="Abdullin & Nikulin & Bagmet & Nikulin & Gontcharov" authorityYear="2021" box="[171,355,240,261]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="5" pageNumber="226" phylum="Cyanobacteria" rank="species" species="vladivostokensis" status="sp. nov.">A. vladivostokensis</taxonomicName>
|
||
<taxonomicNameLabel id="A2669E17FFA0DD5C3E29FF5EFE670C28" box="[361,435,241,262]" pageId="5" pageNumber="226" rank="species">sp. nov.</taxonomicNameLabel>
|
||
</emphasis>
|
||
</th>
|
||
</tr>
|
||
<tr id="3511FD3CFFA022A63FD3FEB8FA5F0C03" box="[147,1419,279,301]" gridrow="2" pageId="5" pageNumber="226" rowspan-2="1" rowspan-3="1" rowspan-4="1" rowspan-5="1">
|
||
<th id="76C09440FFA022A63FD3FEB8FE190C03" box="[147,461,279,301]" gridcol="0" gridrow="2" pageId="5" pageNumber="226">
|
||
2.
|
||
<taxonomicName id="4C2184FDFFA0DD5C3FEBFEB7FEA80C03" authority="PJ S" authorityName="P. Jung, Schermer, Mikhailyuk et Budel (2020:" authorityYear="1222" box="[171,380,279,301]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="5" pageNumber="226" phylum="Cyanobacteria" rank="species" species="chasmolithica">
|
||
<emphasis id="B955236CFFA0DD5C3FEBFEB7FE990C02" box="[171,333,279,301]" italics="true" pageId="5" pageNumber="226">A. chasmolithica</emphasis>
|
||
PJ S
|
||
</taxonomicName>
|
||
15
|
||
</th>
|
||
<td id="76C09440FFA022A63D11FEB8FD680C03" box="[593,700,279,301]" gridcol="1" gridrow="2" pageId="5" pageNumber="226">13.0 (±1.5)</td>
|
||
</tr>
|
||
<tr id="3511FD3CFFA022A63FD3FE90FA5F0C7B" box="[147,1419,319,341]" gridrow="3" pageId="5" pageNumber="226" rowspan-3="1" rowspan-4="1" rowspan-5="1">
|
||
<th id="76C09440FFA022A63FD3FE90FE190C7B" box="[147,461,319,341]" gridcol="0" gridrow="3" pageId="5" pageNumber="226">
|
||
3.
|
||
<taxonomicName id="4C2184FDFFA0DD5C3FEBFE90FEBA0C7A" authority="CENA" authorityName="CENA" box="[171,366,319,340]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="5" pageNumber="226" phylum="Cyanobacteria" rank="species" species="antarctica">
|
||
<emphasis id="B955236CFFA0DD5C3FEBFE90FEFC0C7A" box="[171,296,319,340]" italics="true" pageId="5" pageNumber="226">A. antarctica</emphasis>
|
||
CENA
|
||
</taxonomicName>
|
||
408
|
||
</th>
|
||
<td id="76C09440FFA022A63D11FE90FD680C7B" box="[593,700,319,341]" gridcol="1" gridrow="3" pageId="5" pageNumber="226">11.6 (±1.3)</td>
|
||
<td id="76C09440FFA022A63C4BFE90FCA20C7B" box="[779,886,319,341]" gridcol="2" gridrow="3" pageId="5" pageNumber="226">14.5 (±1.3)</td>
|
||
</tr>
|
||
<tr id="3511FD3CFFA022A63FD3FEC9FA5F0C52" box="[147,1419,358,380]" gridrow="4" pageId="5" pageNumber="226" rowspan-4="1" rowspan-5="1">
|
||
<th id="76C09440FFA022A63FD3FEC9FE190C52" box="[147,461,358,380]" gridcol="0" gridrow="4" pageId="5" pageNumber="226">
|
||
4.
|
||
<taxonomicName id="4C2184FDFFA0DD5C3FEBFEC9FEB50C55" authority="CENA" authorityName="CENA" box="[171,353,358,379]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="5" pageNumber="226" phylum="Cyanobacteria" rank="species" species="atlantica">
|
||
<emphasis id="B955236CFFA0DD5C3FEBFEC9FECF0C55" box="[171,283,358,379]" italics="true" pageId="5" pageNumber="226">A. atlantica</emphasis>
|
||
CENA
|
||
</taxonomicName>
|
||
595
|
||
</th>
|
||
<td id="76C09440FFA022A63D11FEC9FD680C52" box="[593,700,358,380]" gridcol="1" gridrow="4" pageId="5" pageNumber="226">17.0 (±1.6)</td>
|
||
<td id="76C09440FFA022A63C4BFEC9FCA20C52" box="[779,886,358,380]" gridcol="2" gridrow="4" pageId="5" pageNumber="226">14.3 (±1.3)</td>
|
||
<td id="76C09440FFA022A63CFEFEC9FBFD0C52" box="[958,1065,358,380]" gridcol="3" gridrow="4" pageId="5" pageNumber="226">14.3 (±1.4)</td>
|
||
</tr>
|
||
<tr id="3511FD3CFFA022A63FD3FE22FA5F0C8A" box="[147,1419,397,420]" gridrow="5" pageId="5" pageNumber="226" rowspan-5="1">
|
||
<th id="76C09440FFA022A63FD3FE22FE190C8A" box="[147,461,397,420]" gridcol="0" gridrow="5" pageId="5" pageNumber="226">
|
||
5.
|
||
<taxonomicName id="4C2184FDFFA0DD5C3FEBFE21FE950C8C" authorityName="Q. Zhang et L. R. Song" authorityYear="2018" box="[171,321,397,419]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="5" pageNumber="226" phylum="Cyanobacteria" rank="species" species="shaanxiensis">
|
||
<emphasis id="B955236CFFA0DD5C3FEBFE21FE950C8C" box="[171,321,397,419]" italics="true" pageId="5" pageNumber="226">A. shaanxiensis</emphasis>
|
||
</taxonomicName>
|
||
FACHB-2293
|
||
</th>
|
||
<td id="76C09440FFA022A63D11FE22FD680C8A" box="[593,700,397,420]" gridcol="1" gridrow="5" pageId="5" pageNumber="226">13.8 (±1.6)</td>
|
||
<td id="76C09440FFA022A63C4BFE22FCA20C8A" box="[779,886,397,420]" gridcol="2" gridrow="5" pageId="5" pageNumber="226">12.8 (±1.4)</td>
|
||
<td id="76C09440FFA022A63CFEFE22FBFD0C8A" box="[958,1065,397,420]" gridcol="3" gridrow="5" pageId="5" pageNumber="226">15.4 (±1.6)</td>
|
||
<td id="76C09440FFA022A63B2FFE22FB0E0C8A" box="[1135,1242,397,420]" gridcol="4" gridrow="5" pageId="5" pageNumber="226">6.4 (±0.1)</td>
|
||
</tr>
|
||
<tr id="3511FD3CFFA022A63FD3FE1AFA5F0CE5" box="[147,1419,437,459]" gridrow="6" pageId="5" pageNumber="226">
|
||
<th id="76C09440FFA022A63FD3FE1AFE190CE5" box="[147,461,437,459]" gridcol="0" gridrow="6" pageId="5" pageNumber="226">
|
||
6.
|
||
<taxonomicName id="4C2184FDFFA0DD5C3FEBFE1AFE870CE4" box="[171,339,437,458]" class="Cyanophyceae" family="Chroococcaceae" genus="Synechocystis" kingdom="Bacteria" order="Chroococcales" pageId="5" pageNumber="226" phylum="Cyanobacteria" rank="species" species="undetermined">
|
||
<emphasis id="B955236CFFA0DD5C3FEBFE1AFEE40CE4" box="[171,304,437,458]" italics="true" pageId="5" pageNumber="226">Synechocystis</emphasis>
|
||
sp.
|
||
</taxonomicName>
|
||
PCC 7509
|
||
</th>
|
||
<td id="76C09440FFA022A63D11FE1AFD680CE5" box="[593,700,437,459]" gridcol="1" gridrow="6" pageId="5" pageNumber="226">17.5 (±1.8)</td>
|
||
<td id="76C09440FFA022A63C4BFE1AFCA20CE5" box="[779,886,437,459]" gridcol="2" gridrow="6" pageId="5" pageNumber="226">13.5 (±1.5)</td>
|
||
<td id="76C09440FFA022A63CFEFE1AFBFD0CE5" box="[958,1065,437,459]" gridcol="3" gridrow="6" pageId="5" pageNumber="226">14.9 (±1.5)</td>
|
||
<td id="76C09440FFA022A63B2FFE1AFB0E0CE5" box="[1135,1242,437,459]" gridcol="4" gridrow="6" pageId="5" pageNumber="226">14.0 (±1.5)</td>
|
||
<td id="76C09440FFA022A63A60FE1AFA5F0CE5" box="[1312,1419,437,459]" gridcol="5" gridrow="6" pageId="5" pageNumber="226">15.0 (±1.7)</td>
|
||
</tr>
|
||
</table>
|
||
</paragraph>
|
||
<paragraph id="8B9EFF7EFFA0DD5C3FFDFD8EFA5C091D" blockId="5.[136,1452,545,1076]" pageId="5" pageNumber="226">
|
||
Comparison of ITS secondary structures of the D1–D1′ and Box-B helices showed that they have similar patterns of bulges and terminal loops (
|
||
<figureCitation id="131AE3FBFFA0DD5C3E9FFDEAFDF00F71" box="[479,548,581,607]" captionStart="FIGURE 3" captionStartId="5.[136,229,1867,1889]" captionTargetBox="[151,1436,1140,1842]" captionTargetId="figure-412@5.[151,1436,1136,1843]" captionTargetPageId="5" captionText="FIGURE 3. Secondary structures for the D1–D1′ helices in the ITS regions for five Aliterella species and putative genus member Synechocystis sp.PCC 7509.Conservativenucleotides are greycolored.The unique markermutationsforthe newspecies A.vladivostokensis are black colored. Arrowheads show compensatory (CBCs) and hemi-compensatory base changes (hCBCs). Homological base pairs among different species are indicated by dotted lines." figureDoi="http://doi.org/10.5281/zenodo.5751435" httpUri="https://zenodo.org/record/5751435/files/figure.png" pageId="5" pageNumber="226">Fig. 3</figureCitation>
|
||
,
|
||
<figureCitation id="131AE3FBFFA0DD5C3D73FDEAFD900F71" box="[563,580,581,607]" captionStart="FIGURE 4" captionStartId="6.[136,229,1008,1030]" captionTargetBox="[151,1435,195,982]" captionTargetId="figure-27@6.[151,1436,190,984]" captionTargetPageId="6" captionText="FIGURE 4. Secondary structures for the Box-B helices in the ITS regions for five Aliterella species and putative genus member Synechocystis sp. PCC 7509. Conservative nucleotides are grey colored.Arrowheads show compensatory (CBCs) and hemi-compensatory base changes (hCBCs). Homological base pairs among different species are indicated by dotted lines." figureDoi="http://doi.org/10.5281/zenodo.5751437" httpUri="https://zenodo.org/record/5751437/files/figure.png" pageId="5" pageNumber="226">4</figureCitation>
|
||
). The D1–D1′ helix was almost invariant in length (65–67 bp) and structure with 42 conserved sites among
|
||
<taxonomicName id="4C2184FDFFA0DD5C3EB2FDC6FD600FAD" box="[498,692,617,643]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" kingdom="Bacteria" order="Cyanobacteriales" pageId="5" pageNumber="226" phylum="Cyanobacteria" rank="species" species="undetermined">
|
||
<emphasis id="B955236CFFA0DD5C3EB2FDC6FD8F0FAD" box="[498,603,617,643]" italics="true" pageId="5" pageNumber="226">Aliterella</emphasis>
|
||
species
|
||
</taxonomicName>
|
||
(
|
||
<figureCitation id="131AE3FBFFA0DD5C3D85FDC6FCD80FAD" box="[709,780,617,643]" captionStart="FIGURE 3" captionStartId="5.[136,229,1867,1889]" captionTargetBox="[151,1436,1140,1842]" captionTargetId="figure-412@5.[151,1436,1136,1843]" captionTargetPageId="5" captionText="FIGURE 3. Secondary structures for the D1–D1′ helices in the ITS regions for five Aliterella species and putative genus member Synechocystis sp.PCC 7509.Conservativenucleotides are greycolored.The unique markermutationsforthe newspecies A.vladivostokensis are black colored. Arrowheads show compensatory (CBCs) and hemi-compensatory base changes (hCBCs). Homological base pairs among different species are indicated by dotted lines." figureDoi="http://doi.org/10.5281/zenodo.5751435" httpUri="https://zenodo.org/record/5751435/files/figure.png" pageId="5" pageNumber="226">Fig. 3</figureCitation>
|
||
). In
|
||
<taxonomicName id="4C2184FDFFA0DD5C3C03FDC6FBDC0FAD" box="[835,1032,617,643]" class="Cyanophyceae" family="Chroococcaceae" genus="Synechocystis" kingdom="Bacteria" order="Chroococcales" pageId="5" pageNumber="226" phylum="Cyanobacteria" rank="species" species="undetermined">
|
||
<emphasis id="B955236CFFA0DD5C3C03FDC6FC0B0FAD" box="[835,991,617,643]" italics="true" pageId="5" pageNumber="226">Synechocystis</emphasis>
|
||
sp.
|
||
</taxonomicName>
|
||
PCC 7509 the helix was shorter (57 bp) due to the deletion in the terminal loop (
|
||
<figureCitation id="131AE3FBFFA0DD5C3DC5FD22FD1F0F89" box="[645,715,653,679]" captionStart="FIGURE 3" captionStartId="5.[136,229,1867,1889]" captionTargetBox="[151,1436,1140,1842]" captionTargetId="figure-412@5.[151,1436,1136,1843]" captionTargetPageId="5" captionText="FIGURE 3. Secondary structures for the D1–D1′ helices in the ITS regions for five Aliterella species and putative genus member Synechocystis sp.PCC 7509.Conservativenucleotides are greycolored.The unique markermutationsforthe newspecies A.vladivostokensis are black colored. Arrowheads show compensatory (CBCs) and hemi-compensatory base changes (hCBCs). Homological base pairs among different species are indicated by dotted lines." figureDoi="http://doi.org/10.5281/zenodo.5751435" httpUri="https://zenodo.org/record/5751435/files/figure.png" pageId="5" pageNumber="226">Fig. 3</figureCitation>
|
||
). The basal part of the D1–D1′ helix consisted of a conservative 4-bp double-stranded region followed by the internal (bilateral) loop (positions 5–6 and from 55–57 to
|
||
<quantity id="4CD9529BFFA0DD5C3A05FD1EFA780FE5" box="[1349,1452,689,715]" metricMagnitude="0" metricUnit="m" metricValue="1.5748" metricValueMax="1.6002" metricValueMin="1.5493999999999999" pageId="5" pageNumber="226" unit="in" value="62.0" valueMax="63.0" valueMin="61.0">61–63 in</quantity>
|
||
different
|
||
<taxonomicName id="4C2184FDFFA0DD5C3FAFFD7AFE600FC1" box="[239,436,725,751]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" kingdom="Bacteria" order="Cyanobacteriales" pageId="5" pageNumber="226" phylum="Cyanobacteria" rank="species" species="undetermined">
|
||
<emphasis id="B955236CFFA0DD5C3FAFFD7AFE8C0FC1" box="[239,344,725,751]" italics="true" pageId="5" pageNumber="226">Aliterella</emphasis>
|
||
species
|
||
</taxonomicName>
|
||
; 5–6 and
|
||
<quantity id="4CD9529BFFA0DD5C3D61FD7AFD500FC1" box="[545,644,725,752]" metricMagnitude="0" metricUnit="m" metricValue="1.27" metricValueMax="1.3462" metricValueMin="1.1938" pageId="5" pageNumber="226" unit="in" value="50.0" valueMax="53.0" valueMin="47.0">47–53 in</quantity>
|
||
<taxonomicName id="4C2184FDFFA0DD5C3DCCFD7AFC9B0FC1" box="[652,847,725,751]" class="Cyanophyceae" family="Chroococcaceae" genus="Synechocystis" kingdom="Bacteria" order="Chroococcales" pageId="5" pageNumber="226" phylum="Cyanobacteria" rank="species" species="undetermined">
|
||
<emphasis id="B955236CFFA0DD5C3DCCFD7AFCFC0FC1" box="[652,808,725,751]" italics="true" pageId="5" pageNumber="226">Synechocystis</emphasis>
|
||
sp.
|
||
</taxonomicName>
|
||
PCC 7509) and side loop with a single unpaired base (position 51–52, position 43 for
|
||
<taxonomicName id="4C2184FDFFA0DD5C3EBAFD56FD6A0E3D" box="[506,702,761,787]" class="Cyanophyceae" family="Chroococcaceae" genus="Synechocystis" kingdom="Bacteria" order="Chroococcales" pageId="5" pageNumber="226" phylum="Cyanobacteria" rank="species" species="undetermined">
|
||
<emphasis id="B955236CFFA0DD5C3EBAFD56FD420E3D" box="[506,662,761,787]" italics="true" pageId="5" pageNumber="226">Synechocystis</emphasis>
|
||
sp.
|
||
</taxonomicName>
|
||
PCC 7509). Substitutions in the bilateral loop (base change U → C at position 57) and in the side loop (A → C at position 51) differentiated
|
||
<taxonomicName id="4C2184FDFFA0DD5C3C9DFCB2FB610E19" authorityName="Abdullin & Nikulin & Bagmet & Nikulin & Gontcharov" authorityYear="2021" box="[989,1205,797,823]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="5" pageNumber="226" phylum="Cyanobacteria" rank="species" species="vladivostokensis">
|
||
<emphasis id="B955236CFFA0DD5C3C9DFCB2FB610E19" box="[989,1205,797,823]" italics="true" pageId="5" pageNumber="226">A. vladivostokensis</emphasis>
|
||
</taxonomicName>
|
||
. The terminal loop of the helix consisted of five bp and also harbored a unique marker mutation for the new species (A → C at position 29). Most species had two internal loops in the central part of D1–D1′ helix with the exception of
|
||
<taxonomicName id="4C2184FDFFA0DD5C3BE9FCCAFA8C0E51" authorityName="Q. Zhang et L. R. Song" authorityYear="2018" box="[1193,1368,869,895]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="5" pageNumber="226" phylum="Cyanobacteria" rank="species" species="shaanxiensis">
|
||
<emphasis id="B955236CFFA0DD5C3BE9FCCAFA8C0E51" box="[1193,1368,869,895]" italics="true" pageId="5" pageNumber="226">A. shaanxiensis</emphasis>
|
||
</taxonomicName>
|
||
, which had three loops and
|
||
<taxonomicName id="4C2184FDFFA0DD5C3E2CFC26FDFB0E8D" box="[364,559,905,931]" class="Cyanophyceae" family="Chroococcaceae" genus="Synechocystis" kingdom="Bacteria" order="Chroococcales" pageId="5" pageNumber="226" phylum="Cyanobacteria" rank="species" species="undetermined">
|
||
<emphasis id="B955236CFFA0DD5C3E2CFC26FDDC0E8D" box="[364,520,905,931]" italics="true" pageId="5" pageNumber="226">Synechocystis</emphasis>
|
||
sp.
|
||
</taxonomicName>
|
||
PCC 7509 with the one loop. We found one compensatory base change (CBC) and five hemi-compensatory base changes (hCBCs) in our secondary structure models. While CBC (A-U → G-C) was shared between
|
||
<taxonomicName id="4C2184FDFFA0DD5C3E00FC7EFDCC0EC5" authorityName="Abdullin & Nikulin & Bagmet & Nikulin & Gontcharov" authorityYear="2021" box="[320,536,977,1003]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="5" pageNumber="226" phylum="Cyanobacteria" rank="species" species="vladivostokensis">
|
||
<emphasis id="B955236CFFA0DD5C3E00FC7EFDCC0EC5" box="[320,536,977,1003]" italics="true" pageId="5" pageNumber="226">A. vladivostokensis</emphasis>
|
||
</taxonomicName>
|
||
and
|
||
<taxonomicName id="4C2184FDFFA0DD5C3D12FC7EFD300EC5" box="[594,740,977,1003]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="5" pageNumber="226" phylum="Cyanobacteria" rank="species" species="antarctica">
|
||
<emphasis id="B955236CFFA0DD5C3D12FC7EFD300EC5" box="[594,740,977,1003]" italics="true" pageId="5" pageNumber="226">A. antarctica</emphasis>
|
||
</taxonomicName>
|
||
(at positions
|
||
<quantity id="4CD9529BFFA0DD5C3CC1FC7EFC320EC5" box="[897,998,977,1003]" metricMagnitude="-1" metricUnit="m" metricValue="7.747" metricValueMax="10.668" metricValueMin="4.826" pageId="5" pageNumber="226" unit="in" value="30.5" valueMax="42.0" valueMin="19.0">19–42 in</quantity>
|
||
both cases), the hCBCs were attributed to
|
||
<taxonomicName id="4C2184FDFFA0DD5C3FE5FC5AFEFD0921" box="[165,297,1013,1039]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="5" pageNumber="226" phylum="Cyanobacteria" rank="species" species="atlantica">
|
||
<emphasis id="B955236CFFA0DD5C3FE5FC5AFEFD0921" box="[165,297,1013,1039]" italics="true" pageId="5" pageNumber="226">A. atlantica</emphasis>
|
||
</taxonomicName>
|
||
(C-G → U-G, at position 22),
|
||
<taxonomicName id="4C2184FDFFA0DD5C3DC6FC5AFCC30921" box="[646,791,1013,1039]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="5" pageNumber="226" phylum="Cyanobacteria" rank="species" species="antarctica">
|
||
<emphasis id="B955236CFFA0DD5C3DC6FC5AFCC30921" box="[646,791,1013,1039]" italics="true" pageId="5" pageNumber="226">A. antarctica</emphasis>
|
||
</taxonomicName>
|
||
(two substitutions C-G → U-G at positions 20 and 27),
|
||
<taxonomicName id="4C2184FDFFA0DD5C3AD3FC5AFEF1091D" authorityName="P. Jung, Schermer, Mikhailyuk et Budel (2020:" authorityYear="1222" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="5" pageNumber="226" phylum="Cyanobacteria" rank="species" species="chasmolithica">
|
||
<emphasis id="B955236CFFA0DD5C3AD3FC5AFEF1091D" italics="true" pageId="5" pageNumber="226">A. chasmolithica</emphasis>
|
||
</taxonomicName>
|
||
(G-C → G-U, at position 33;
|
||
<figureCitation id="131AE3FBFFA0DD5C3D37FBB6FD6D091D" box="[631,697,1049,1075]" captionStart="FIGURE 3" captionStartId="5.[136,229,1867,1889]" captionTargetBox="[151,1436,1140,1842]" captionTargetId="figure-412@5.[151,1436,1136,1843]" captionTargetPageId="5" captionText="FIGURE 3. Secondary structures for the D1–D1′ helices in the ITS regions for five Aliterella species and putative genus member Synechocystis sp.PCC 7509.Conservativenucleotides are greycolored.The unique markermutationsforthe newspecies A.vladivostokensis are black colored. Arrowheads show compensatory (CBCs) and hemi-compensatory base changes (hCBCs). Homological base pairs among different species are indicated by dotted lines." figureDoi="http://doi.org/10.5281/zenodo.5751435" httpUri="https://zenodo.org/record/5751435/files/figure.png" pageId="5" pageNumber="226">Fig. 3</figureCitation>
|
||
), and
|
||
<taxonomicName id="4C2184FDFFA0DD5C3DBFFBB6FC15091D" box="[767,961,1049,1075]" class="Cyanophyceae" family="Chroococcaceae" genus="Synechocystis" kingdom="Bacteria" order="Chroococcales" pageId="5" pageNumber="226" phylum="Cyanobacteria" rank="species" species="undetermined">
|
||
<emphasis id="B955236CFFA0DD5C3DBFFBB6FC4F091D" box="[767,923,1049,1075]" italics="true" pageId="5" pageNumber="226">Synechocystis</emphasis>
|
||
sp.
|
||
</taxonomicName>
|
||
PCC 7509 (C-G → U-G at position 13).
|
||
</paragraph>
|
||
<caption id="DF5EAFF6FFA0DD5C3FC8F8E4FD5C0AE3" ID-DOI="http://doi.org/10.5281/zenodo.5751435" ID-Zenodo-Dep="5751435" httpUri="https://zenodo.org/record/5751435/files/figure.png" pageId="5" pageNumber="226" startId="5.[136,229,1867,1889]" targetBox="[151,1436,1140,1842]" targetPageId="5">
|
||
<paragraph id="8B9EFF7EFFA0DD5C3FC8F8E4FD5C0AE3" blockId="5.[136,1452,1866,1997]" pageId="5" pageNumber="226">
|
||
<emphasis id="B955236CFFA0DD5C3FC8F8E4FED50A4E" bold="true" box="[136,257,1867,1889]" pageId="5" pageNumber="226">FIGURE 3.</emphasis>
|
||
Secondary structures for the D1–D1′ helices in the ITS regions for five
|
||
<taxonomicName id="4C2184FDFFA0DD5C3CA5F8E4FB5A0A4F" box="[997,1166,1867,1889]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" kingdom="Bacteria" order="Cyanobacteriales" pageId="5" pageNumber="226" phylum="Cyanobacteria" rank="species" species="undetermined">
|
||
<emphasis id="B955236CFFA0DD5C3CA5F8E4FBEB0A4E" box="[997,1087,1867,1888]" italics="true" pageId="5" pageNumber="226">Aliterella</emphasis>
|
||
species
|
||
</taxonomicName>
|
||
and putative genus member
|
||
<taxonomicName id="4C2184FDFFA0DD5C3FC8F8C0FEF90AAB" box="[136,301,1903,1925]" class="Cyanophyceae" family="Chroococcaceae" genus="Synechocystis" kingdom="Bacteria" order="Chroococcales" pageId="5" pageNumber="226" phylum="Cyanobacteria" rank="species" species="undetermined">
|
||
<emphasis id="B955236CFFA0DD5C3FC8F8C0FED90AAA" box="[136,269,1903,1924]" italics="true" pageId="5" pageNumber="226">Synechocystis</emphasis>
|
||
sp.
|
||
</taxonomicName>
|
||
PCC 7509.Conservative nucleotides are grey colored.The unique marker mutations for the new species
|
||
<taxonomicName id="4C2184FDFFA0DD5C3BB6F8C0FA7F0AAA" authorityName="Abdullin & Nikulin & Bagmet & Nikulin & Gontcharov" authorityYear="2021" box="[1270,1451,1903,1924]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="5" pageNumber="226" phylum="Cyanobacteria" rank="species" species="vladivostokensis">
|
||
<emphasis id="B955236CFFA0DD5C3BB6F8C0FA7F0AAA" box="[1270,1451,1903,1924]" italics="true" pageId="5" pageNumber="226">A.vladivostokensis</emphasis>
|
||
</taxonomicName>
|
||
are black colored. Arrowheads show compensatory (CBCs) and hemi-compensatory base changes (hCBCs). Homological base pairs among different species are indicated by dotted lines.
|
||
</paragraph>
|
||
</caption>
|
||
<caption id="DF5EAFF6FFA3DD5F3FC8FC5FFB820960" ID-DOI="http://doi.org/10.5281/zenodo.5751437" ID-Zenodo-Dep="5751437" httpUri="https://zenodo.org/record/5751437/files/figure.png" pageId="6" pageNumber="227" startId="6.[136,229,1008,1030]" targetBox="[151,1435,195,982]" targetPageId="6">
|
||
<paragraph id="8B9EFF7EFFA3DD5F3FC8FC5FFB820960" blockId="6.[136,1452,1008,1102]" pageId="6" pageNumber="227">
|
||
<emphasis id="B955236CFFA3DD5F3FC8FC5FFED6092B" bold="true" box="[136,258,1008,1030]" pageId="6" pageNumber="227">FIGURE 4.</emphasis>
|
||
Secondary structures for the Box-B helices in the ITS regions for five
|
||
<taxonomicName id="4C2184FDFFA3DD5F3CA2FC5FFB5F0928" box="[994,1163,1008,1030]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" kingdom="Bacteria" order="Cyanobacteriales" pageId="6" pageNumber="227" phylum="Cyanobacteria" rank="species" species="undetermined">
|
||
<emphasis id="B955236CFFA3DD5F3CA2FC5FFBE8092B" box="[994,1084,1008,1029]" italics="true" pageId="6" pageNumber="227">Aliterella</emphasis>
|
||
species
|
||
</taxonomicName>
|
||
and putative genus member
|
||
<taxonomicName id="4C2184FDFFA3DD5F3FC8FBBBFEFA0904" box="[136,302,1044,1066]" class="Cyanophyceae" family="Chroococcaceae" genus="Synechocystis" kingdom="Bacteria" order="Chroococcales" pageId="6" pageNumber="227" phylum="Cyanobacteria" rank="species" species="undetermined">
|
||
<emphasis id="B955236CFFA3DD5F3FC8FBBBFED90907" box="[136,269,1044,1065]" italics="true" pageId="6" pageNumber="227">Synechocystis</emphasis>
|
||
sp.
|
||
</taxonomicName>
|
||
PCC 7509. Conservative nucleotides are grey colored.Arrowheads show compensatory (CBCs) and hemi-compensatory base changes (hCBCs). Homological base pairs among different species are indicated by dotted lines.
|
||
</paragraph>
|
||
</caption>
|
||
<paragraph id="8B9EFF7EFFA3DD5F3FFDFB0FFDBF08F5" blockId="6.[136,1452,1184,1499]" pageId="6" pageNumber="227">
|
||
The Box-B helix was more variable in both primary and secondary structure (53–62 bp, 29 conservative sites); therefore, homologous nucleotides were difficult to identify in some cases (
|
||
<figureCitation id="131AE3FBFFA3DD5F3C8DFB6BFBC609F1" box="[973,1042,1220,1247]" captionStart="FIGURE 4" captionStartId="6.[136,229,1008,1030]" captionTargetBox="[151,1435,195,982]" captionTargetId="figure-27@6.[151,1436,190,984]" captionTargetPageId="6" captionText="FIGURE 4. Secondary structures for the Box-B helices in the ITS regions for five Aliterella species and putative genus member Synechocystis sp. PCC 7509. Conservative nucleotides are grey colored.Arrowheads show compensatory (CBCs) and hemi-compensatory base changes (hCBCs). Homological base pairs among different species are indicated by dotted lines." figureDoi="http://doi.org/10.5281/zenodo.5751437" httpUri="https://zenodo.org/record/5751437/files/figure.png" pageId="6" pageNumber="227">Fig. 4</figureCitation>
|
||
). The middle part of the Box-B helix had two (
|
||
<taxonomicName id="4C2184FDFFA3DD5F3FB5FB46FEAD082C" box="[245,377,1256,1283]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="6" pageNumber="227" phylum="Cyanobacteria" rank="species" species="atlantica">
|
||
<emphasis id="B955236CFFA3DD5F3FB5FB46FEAD082C" box="[245,377,1256,1283]" italics="true" pageId="6" pageNumber="227">A. atlantica</emphasis>
|
||
</taxonomicName>
|
||
) to four (
|
||
<taxonomicName id="4C2184FDFFA3DD5F3EA9FB46FD16082C" authorityName="Abdullin & Nikulin & Bagmet & Nikulin & Gontcharov" authorityYear="2021" box="[489,706,1256,1283]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="6" pageNumber="227" phylum="Cyanobacteria" rank="species" species="vladivostokensis">
|
||
<emphasis id="B955236CFFA3DD5F3EA9FB46FD16082C" box="[489,706,1256,1283]" italics="true" pageId="6" pageNumber="227">A. vladivostokensis</emphasis>
|
||
</taxonomicName>
|
||
) mostly bilateral internal loops. Point mutations, mostly found in single stranded domains, and indels frequent in the basal part of the Box-B altered the bulges location between species. A base substitution G → U at position
|
||
<quantity id="4CD9529BFFA3DD5F3D7DFA9EFDA10864" box="[573,629,1328,1355]" metricMagnitude="-1" metricUnit="m" metricValue="2.794" pageId="6" pageNumber="227" unit="in" value="11.0">11 in</quantity>
|
||
the Box-B disrupted nucleotides pairing that led to an additional internal loop formation in
|
||
<taxonomicName id="4C2184FDFFA3DD5F3E11FAFAFDF30840" authorityName="Abdullin & Nikulin & Bagmet & Nikulin & Gontcharov" authorityYear="2021" box="[337,551,1364,1391]" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="6" pageNumber="227" phylum="Cyanobacteria" rank="species" species="vladivostokensis">
|
||
<emphasis id="B955236CFFA3DD5F3E11FAFAFDF30840" box="[337,551,1364,1391]" italics="true" pageId="6" pageNumber="227">A. vladivostokensis</emphasis>
|
||
</taxonomicName>
|
||
sequence (
|
||
<figureCitation id="131AE3FBFFA3DD5F3DE2FAFBFD320841" box="[674,742,1364,1391]" captionStart="FIGURE 4" captionStartId="6.[136,229,1008,1030]" captionTargetBox="[151,1435,195,982]" captionTargetId="figure-27@6.[151,1436,190,984]" captionTargetPageId="6" captionText="FIGURE 4. Secondary structures for the Box-B helices in the ITS regions for five Aliterella species and putative genus member Synechocystis sp. PCC 7509. Conservative nucleotides are grey colored.Arrowheads show compensatory (CBCs) and hemi-compensatory base changes (hCBCs). Homological base pairs among different species are indicated by dotted lines." figureDoi="http://doi.org/10.5281/zenodo.5751437" httpUri="https://zenodo.org/record/5751437/files/figure.png" pageId="6" pageNumber="227">Fig. 4</figureCitation>
|
||
). The Box-B helix in
|
||
<taxonomicName id="4C2184FDFFA3DD5F3C96FAFBFB430841" box="[982,1175,1364,1391]" class="Cyanophyceae" family="Chroococcaceae" genus="Synechocystis" kingdom="Bacteria" order="Chroococcales" pageId="6" pageNumber="227" phylum="Cyanobacteria" rank="species" species="undetermined">
|
||
<emphasis id="B955236CFFA3DD5F3C96FAFBFBA60840" box="[982,1138,1364,1390]" italics="true" pageId="6" pageNumber="227">Synechocystis</emphasis>
|
||
sp.
|
||
</taxonomicName>
|
||
PCC 7509 differed from those in other species in lacking conservative motive at the base of the helix and shorter terminal loop (5 vs. 7–9 bases;
|
||
<figureCitation id="131AE3FBFFA3DD5F3FC8FA33FF190899" box="[136,205,1436,1463]" captionStart="FIGURE 4" captionStartId="6.[136,229,1008,1030]" captionTargetBox="[151,1435,195,982]" captionTargetId="figure-27@6.[151,1436,190,984]" captionTargetPageId="6" captionText="FIGURE 4. Secondary structures for the Box-B helices in the ITS regions for five Aliterella species and putative genus member Synechocystis sp. PCC 7509. Conservative nucleotides are grey colored.Arrowheads show compensatory (CBCs) and hemi-compensatory base changes (hCBCs). Homological base pairs among different species are indicated by dotted lines." figureDoi="http://doi.org/10.5281/zenodo.5751437" httpUri="https://zenodo.org/record/5751437/files/figure.png" pageId="6" pageNumber="227">Fig. 4</figureCitation>
|
||
). We found one CBC in
|
||
<taxonomicName id="4C2184FDFFA3DD5F3EA2FA33FD710899" box="[482,677,1436,1463]" class="Cyanophyceae" family="Chroococcaceae" genus="Synechocystis" kingdom="Bacteria" order="Chroococcales" pageId="6" pageNumber="227" phylum="Cyanobacteria" rank="species" species="undetermined">
|
||
<emphasis id="B955236CFFA3DD5F3EA2FA33FDAA0898" box="[482,638,1436,1462]" italics="true" pageId="6" pageNumber="227">Synechocystis</emphasis>
|
||
sp.
|
||
</taxonomicName>
|
||
PCC 7509 (A-U → U-G, at positions 3 and 29) and one hCBC in
|
||
<taxonomicName id="4C2184FDFFA3DD5F3AD3FA32FEF108F4" authorityName="P. Jung, Schermer, Mikhailyuk et Budel (2020:" authorityYear="1222" class="Cyanobacteriia" family="Chroococcidiopsidaceae" genus="Aliterella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="6" pageNumber="227" phylum="Cyanobacteria" rank="species" species="chasmolithica">
|
||
<emphasis id="B955236CFFA3DD5F3AD3FA32FEF108F4" italics="true" pageId="6" pageNumber="227">A. chasmolithica</emphasis>
|
||
</taxonomicName>
|
||
(A-U → G-U, at position 3).
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |