139 lines
9.3 KiB
XML
139 lines
9.3 KiB
XML
<document ID-DOI="http://dx.doi.org/10.3897/mycokeys.7.4508" ID-GBIF-Dataset="471f4b4d-525a-4b91-8c41-28b8c7ca2944" ID-GBIF-Taxon="152023595" ID-Pensoft-Pub="1314-4049-7-1" ModsDocAuthor="" ModsDocDate="2013" ModsDocID="1314-4049-7-1" ModsDocOrigin="MycoKeys 7" ModsDocTitle="DNA barcode identification of lichen-forming fungal species in the Rhizoplaca melanophthalma species-complex (Lecanorales, Lecanoraceae), including five new species" checkinTime="1451252987099" checkinUser="pensoft" docAuthor="Leavitt, Steven D., Fernandez-Mendoza, Fernando, Perez-Ortega, Sergio, Sohrabi, Mohammad, Divakar, Pradeep K., Lumbsch, H. Thorsten & Clair, Larry L. St." docDate="2013" docId="03D2C8B65E06CD8921CE29811A6AC3DD" docLanguage="en" docName="MycoKeys 7: 1-22" docOrigin="MycoKeys 7" docSource="http://dx.doi.org/10.3897/mycokeys.7.4508" docTitle="Rhizoplaca shushanii S. Leavitt, F. Fernandez-Mendoza, Lumbsch, Sohrabi & L. St. Clair, sp. nov." docType="treatment" docVersion="2" lastPageNumber="12" masterDocId="FF9AFFE4FFB5985F4C434926FF83FFB8" masterDocTitle="DNA barcode identification of lichen-forming fungal species in the Rhizoplaca melanophthalma species-complex (Lecanorales, Lecanoraceae), including five new species" masterLastPageNumber="22" masterPageNumber="1" pageId="11" pageNumber="12" updateTime="1643529466877" updateUser="ExternalLinkService">
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<mods:mods xmlns:mods="http://www.loc.gov/mods/v3">
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<mods:titleInfo>
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<mods:title>DNA barcode identification of lichen-forming fungal species in the Rhizoplaca melanophthalma species-complex (Lecanorales, Lecanoraceae), including five new species</mods:title>
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</mods:titleInfo>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Leavitt, Steven D.</mods:namePart>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Fernandez-Mendoza, Fernando</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Perez-Ortega, Sergio</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Sohrabi, Mohammad</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Divakar, Pradeep K.</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Lumbsch, H. Thorsten</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Clair, Larry L. St.</mods:namePart>
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</mods:name>
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<mods:typeOfResource>text</mods:typeOfResource>
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<mods:relatedItem type="host">
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<mods:titleInfo>
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<mods:title>MycoKeys</mods:title>
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</mods:titleInfo>
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<mods:part>
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<mods:date>2013</mods:date>
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<mods:detail type="volume">
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<mods:number>7</mods:number>
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</mods:detail>
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<mods:extent unit="page">
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<mods:start>1</mods:start>
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<mods:end>22</mods:end>
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<mods:location>
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<mods:url>http://dx.doi.org/10.3897/mycokeys.7.4508</mods:url>
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</mods:location>
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<mods:classification>journal article</mods:classification>
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<mods:identifier type="DOI">http://dx.doi.org/10.3897/mycokeys.7.4508</mods:identifier>
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<mods:identifier type="Pensoft-Pub">1314-4049-7-1</mods:identifier>
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</mods:mods>
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<treatment ID-GBIF-Taxon="152023595" LSID="urn:lsid:plazi:treatment:03D2C8B65E06CD8921CE29811A6AC3DD" httpUri="http://treatment.plazi.org/id/03D2C8B65E06CD8921CE29811A6AC3DD" lastPageNumber="12" pageId="11" pageNumber="12">
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<subSubSection pageId="11" pageNumber="12" type="nomenclature">
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<paragraph pageId="11" pageNumber="12">
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<taxonomicName LSID="MycoBank no. MB 803479" authority="S. Leavitt, F. Fernandez-Mendoza, Lumbsch, Sohrabi & L. St. Clair" class="Lecanoromycetes" family="Lecanoraceae" genus="Rhizoplaca" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Rhizoplaca shushanii" order="Lecanorales" pageId="11" pageNumber="12" phylum="Ascomycota" rank="species" species="shushanii">
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Rhizoplaca shushanii S. Leavitt, F.
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<normalizedToken originalValue="Fernández-Mendoza">Fernandez-Mendoza</normalizedToken>
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, Lumbsch, Sohrabi & L. St. Clair
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</taxonomicName>
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<taxonomicNameLabel pageId="11" pageNumber="12">sp. nov.</taxonomicNameLabel>
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</paragraph>
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</subSubSection>
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<subSubSection pageId="11" pageNumber="12" type="type">
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<paragraph pageId="11" pageNumber="12">Type.</paragraph>
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<paragraph pageId="11" pageNumber="12">
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USA, Utah, Wayne County, Thousand Lakes Mountain, vicinity of 'Flat
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<normalizedToken originalValue="Top’">Top'</normalizedToken>
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, near summit,
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<geoCoordinate direction="north" orientation="latitude" precision="5" value="38.4366">38.4366°N</geoCoordinate>
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,
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<geoCoordinate direction="west" orientation="longitude" precision="5" value="-111.4677">111.4677°W</geoCoordinate>
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, on basalt, 3270 m alt., October 1997, Lyndon D. Porter BRY-C55061 (holotype BRY).
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</paragraph>
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</subSubSection>
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<subSubSection pageId="11" pageNumber="12" type="description">
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<paragraph pageId="11" pageNumber="12">Description.</paragraph>
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<paragraph pageId="11" pageNumber="12">
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Morphologically similar to
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<taxonomicName class="Lecanoromycetes" family="Lecanoraceae" genus="Rhizoplaca" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Rhizoplaca melanophthalma" order="Lecanorales" pageId="11" pageNumber="12" phylum="Ascomycota" rank="species" species="melanophthalma">Rhizoplaca melanophthalma</taxonomicName>
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sensu stricto, but consists of specimens recovered within 'clade
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<normalizedToken originalValue="III’">III'</normalizedToken>
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in
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<bibRefCitation author="Leavitt, SD" journalOrPublisher="Molecular Phylogenetics and Evolution" pageId="16" pageNumber="17" pagination="587 - 602" title="Complex patterns of speciation in cosmopolitan '' rock posy' ' lichens - Discovering and delimiting cryptic fungal species in the lichen-forming Rhizoplaca melanophthalma species-complex (Lecanoraceae, Ascomycota)." url="10.1016/j.ympev.2011.03.020" volume="59" year="2011 a">Leavitt et al. (2011a)</bibRefCitation>
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, which is supported as a lineage distinct from all other populations according to coalescent-based genetic analysis of multiple genetic loci. The mean genetic distances among ITS haplotypes was estimated to be 0.001
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<normalizedToken originalValue="±">+/-</normalizedToken>
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0.002.
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</paragraph>
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<paragraph pageId="11" pageNumber="12">
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<normalizedToken originalValue="Chemistry–">Chemistry-</normalizedToken>
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Usnic (major), psoromic (major), subpsoromic (minor), and 2'-O-demethylsubpsoromic (minor or trace) acids; usually with constipatic (minor) and 2'-O-demethylpsoromic (minor) acids; and occasionally with dehydroconstipatic (minor) and dehydroprotocetraric (minor) acids.
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</paragraph>
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</subSubSection>
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<subSubSection pageId="11" pageNumber="12" type="reference phylogeny">
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<paragraph pageId="11" pageNumber="12">Reference phylogeny.</paragraph>
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<paragraph pageId="11" pageNumber="12">
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<bibRefCitation author="Leavitt, SD" journalOrPublisher="Molecular Phylogenetics and Evolution" pageId="16" pageNumber="17" pagination="587 - 602" title="Complex patterns of speciation in cosmopolitan '' rock posy' ' lichens - Discovering and delimiting cryptic fungal species in the lichen-forming Rhizoplaca melanophthalma species-complex (Lecanoraceae, Ascomycota)." url="10.1016/j.ympev.2011.03.020" volume="59" year="2011 a">Leavitt et al. 2011a</bibRefCitation>
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(fig. 5, 'clade
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<normalizedToken originalValue="III’">III'</normalizedToken>
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).
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</paragraph>
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</subSubSection>
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<subSubSection pageId="11" pageNumber="12" type="reference sequences">
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<paragraph pageId="11" pageNumber="12">Reference sequences.</paragraph>
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<paragraph pageId="11" pageNumber="12">GenBank Nos. HM577282 (ITS), HM577058 (IGS), HM577187 (group I intron), HM577416 (MCM 7), and HM576927 (β-tubulin).</paragraph>
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<paragraph pageId="11" pageNumber="12">Phylogenetic notes: A monophyletic lineage in both concatenated multilocus gene tree with strong statistical support (ML bootstrap = 100%; posterior probability 1.0), and with strong statistical support in the ITS gene topology (ML bootstrap = 100%, this study); and high speciation probability inferred from multiple loci (BPP speciation probability = 1.0).</paragraph>
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</subSubSection>
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<subSubSection pageId="11" pageNumber="12" type="ecology and distribution">
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<paragraph pageId="11" pageNumber="12">Ecology and distribution.</paragraph>
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<paragraph pageId="11" pageNumber="12">Found growing only on sun-exposed basalt boulders in subalpine meadows in southwestern USA. Currently known only from subalpine habitats on the Aquarius Plateau in southern Utah, USA.</paragraph>
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</subSubSection>
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<subSubSection pageId="11" pageNumber="12" type="etymology">
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<paragraph pageId="11" pageNumber="12">Etymology.</paragraph>
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<paragraph pageId="11" pageNumber="12">The new taxon is named in honor ofthe late Dr. Sam Shushan, a pioneer in western North American lichenology.</paragraph>
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</subSubSection>
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<subSubSection pageId="11" pageNumber="12" type="specimens examined">
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<paragraph pageId="11" pageNumber="12">Specimens examined.</paragraph>
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<paragraph pageId="11" pageNumber="12">See supplementary file 1.</paragraph>
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</subSubSection>
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</treatment>
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</document> |