201 lines
22 KiB
XML
201 lines
22 KiB
XML
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<mods:title id="2F2D986AEA09ABC782322090D2A95EE0">Tales from the crypt: genome mining from fungarium specimens improves resolution of the mushroom tree of life</mods:title>
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<treatment id="03A2EB6EFFD2FFDDFCB13C0CFA2183ED" ID-DOI="http://doi.org/10.5281/zenodo.7848635" ID-GBIF-Taxon="209562020" ID-Zenodo-Dep="7848635" LSID="urn:lsid:plazi:treatment:03A2EB6EFFD2FFDDFCB13C0CFA2183ED" httpUri="http://treatment.plazi.org/id/03A2EB6EFFD2FFDDFCB13C0CFA2183ED" lastPageNumber="27" pageId="16" pageNumber="27">
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<paragraph id="8BB45A78FFD2FFDDFCB13C0CFADB867B" blockId="16.[806,1422,199,1718]" box="[807,1393,779,801]" pageId="16" pageNumber="27">
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<taxonomicName id="4C0B21FBFFD2FFDDFCB13C0CFADB867B" authorityName="Fr." box="[807,1393,779,801]" kingdom="Fungi" order="Agaricales" pageId="16" pageNumber="27" rank="subOrder" subOrder="Agaricineae">
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<emphasis id="B97F866AFFD2FFDDFCB13C0CFC6B867A" bold="true" box="[807,961,779,801]" pageId="16" pageNumber="27">Agaricineae</emphasis>
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Fr.,
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<emphasis id="B97F866AFFD2FFDDFC6C3C0CFBE1867B" box="[1018,1099,779,800]" italics="true" pageId="16" pageNumber="27">emend.</emphasis>
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Aime, Dentinger & Gaya
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</taxonomicName>
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</paragraph>
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</subSubSection>
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<subSubSection id="C31109F3FFD2FFDDFCA93C2DFA2183ED" pageId="16" pageNumber="27" type="description">
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<paragraph id="8BB45A78FFD2FFDDFCA93C2DFADE861B" blockId="16.[806,1422,199,1718]" box="[831,1396,810,832]" pageId="16" pageNumber="27">
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Fries, EM. 1825.
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<emphasis id="B97F866AFFD2FFDDFB903C2DFA8C8664" box="[1030,1318,810,831]" italics="true" pageId="16" pageNumber="27">Systema orbis vegetabilis</emphasis>
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, p. 65.
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</paragraph>
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<paragraph id="8BB45A78FFD2FFDDFCA93C4EFBEF8626" blockId="16.[806,1422,199,1718]" pageId="16" pageNumber="27">
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<emphasis id="B97F866AFFD2FFDDFCA93C4EFC648606" box="[831,974,840,862]" italics="true" pageId="16" pageNumber="27">
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<typeStatus id="54B0E4DAFFD2FFDDFCA93C4EFCDF8605" box="[831,885,841,862]" pageId="16" pageNumber="27">Type</typeStatus>
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family
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</emphasis>
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||
:
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<taxonomicName id="4C0B21FBFFD2FFDDFC723C4FFAA58605" authority="Chevall., Fl." authorityName="Chevall., Fl." box="[996,1295,840,862]" class="Agaricomycetes" family="Agaricaceae" kingdom="Fungi" order="Agaricales" pageId="16" pageNumber="27" phylum="Basidiomycota" rank="family">Agaricaceae Chevall., Fl.</taxonomicName>
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gen. env.
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<bibCitation id="5E215214FFD2FFDDFCB13C60FBEB8626" box="[807,1089,871,893]" page="121" pageId="16" pageNumber="27" score="0.39972816245807974" volumeTitle="Paris (Paris)" year="1826">Paris (Paris): 121 (1826)</bibCitation>
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.
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</paragraph>
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<paragraph id="8BB45A78FFD2FFDDFCA93C82FB6D8108" blockId="16.[806,1422,199,1718]" pageId="16" pageNumber="27">
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Basidiomata predominantly agaricoid or gasteroid; agaricoid development various, including several hemiangiocarpic lineages, but not angiocarpic. Hyphae monomitic, clamp connections present or absent. Basidia 2–4 spored; basidiospores typically pigmented some shade of brown with exception of members formerly placed in
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<taxonomicName id="4C0B21FBFFD2FFDDFBAE3B3AFB688108" box="[1080,1218,1085,1107]" class="Agaricomycetes" family="Lepiotaceae" higherTaxonomySource="GBIF" kingdom="Fungi" order="Agaricales" pageId="16" pageNumber="27" phylum="Basidiomycota" rank="family">Lepiotaceae</taxonomicName>
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.
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</paragraph>
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||
<paragraph id="8BB45A78FFD2FFDDFCA93B5BFA2183ED" blockId="16.[806,1422,199,1718]" pageId="16" pageNumber="27">
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||
<emphasis id="B97F866AFFD2FFDDFCA93B5BFBE5812B" box="[831,1103,1115,1137]" italics="true" pageId="16" pageNumber="27">Representative families</emphasis>
|
||
:
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||
<taxonomicName id="4C0B21FBFFD2FFDDFBF23B5CFB5A812A" box="[1124,1264,1115,1137]" class="Agaricomycetes" family="Agaricaceae" kingdom="Fungi" order="Agaricales" pageId="16" pageNumber="27" phylum="Basidiomycota" rank="family">Agaricaceae</taxonomicName>
|
||
,
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<taxonomicName id="4C0B21FBFFD2FFDDFA943B5CFB7B81CB" authority="Vilgalys, Moncalvo & Redhead" authorityName="Vilgalys, Moncalvo & Redhead" class="Agaricomycetes" family="Psathyrellaceae" kingdom="Fungi" order="Agaricales" pageId="16" pageNumber="27" phylum="Basidiomycota" rank="family">Psathyrellaceae Vilgalys, Moncalvo & Redhead</taxonomicName>
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,
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<taxonomicName id="4C0B21FBFFD2FFDDFB773B7DFBA881F5" authority="Singer & A. H. Sm." authorityName="Singer & A. H. Sm." class="Agaricomycetes" family="Strophariaceae" kingdom="Fungi" order="Agaricales" pageId="16" pageNumber="27" phylum="Basidiomycota" rank="family">Strophariaceae Singer & A.H. Sm.</taxonomicName>
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,
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||
<taxonomicName id="4C0B21FBFFD2FFDDFB863B9FFAAD81F5" authority="Singer" authorityName="Singer" box="[1040,1287,1176,1198]" class="Agaricomycetes" family="Crepidotaceae" higherTaxonomySource="CoL,GBIF" kingdom="Fungi" order="Agaricales" pageId="16" pageNumber="27" phylum="Basidiomycota" rank="family">Crepidotaceae Singer</taxonomicName>
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||
,
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||
<taxonomicName id="4C0B21FBFFD2FFDDFA823B9FFCCC8196" class="Agaricomycetes" family="Hydnangiaceae" kingdom="Fungi" order="Agaricales" pageId="16" pageNumber="27" phylum="Basidiomycota" rank="family">Hydnangiaceae</taxonomicName>
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||
G aum €. & C.W. Dodge,
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<taxonomicName id="4C0B21FBFFD2FFDDFBE93BBFFCFF81B7" authority="Vittad." authorityName="Vittad." class="Agaricomycetes" family="Hymenogastraceae" kingdom="Fungi" order="Agaricales" pageId="16" pageNumber="27" phylum="Basidiomycota" rank="family">Hymenogastraceae Vittad.</taxonomicName>
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||
,
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<taxonomicName id="4C0B21FBFFD2FFDDFCF13BD1FC5B81B7" box="[871,1009,1238,1260]" class="Agaricomycetes" family="Inocybaceae" kingdom="Fungi" order="Agaricales" pageId="16" pageNumber="27" phylum="Basidiomycota" rank="family">Inocybaceae</taxonomicName>
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||
J ulich €,
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||
<taxonomicName id="4C0B21FBFFD2FFDDFBCE3BD1FB4E81B7" box="[1112,1252,1238,1260]" class="Agaricomycetes" family="Tubariaceae" kingdom="Fungi" order="Agaricales" pageId="16" pageNumber="27" phylum="Basidiomycota" rank="family">Tubariaceae</taxonomicName>
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Vizzini.
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||
<emphasis id="B97F866AFFD2FFDDFAD13BD1FA2C81B0" box="[1351,1414,1238,1259]" italics="true" pageId="16" pageNumber="27">Notes</emphasis>
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||
: This corresponds to previously recognized ‘Agaricoid’ clade, which has been consistently recovered as monophyletic in recent studies (
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<bibRefCitation id="EF9A2789FFD2FFDDFB013A36FA23801C" author="Matheny PB & Curtis JM & Hofstetter V & Aime MC & Moncalvo JM & Ge ZW & Slot JC & Ammirati JF & Baroni TJ & Bougher NL & Hughes KW & Lodge DJ & Kerrigan RW & Seidl MT & Aanen DK & DeNitis M & Daniele GM & Desjardin DE & Kropp BR & Norvell LL & Parker A & Vellinga EC & Vilgalys R & Hibbett DS" box="[1175,1417,1329,1351]" pageId="16" pageNumber="27" pagination="982 - 995" refId="ref15027" refString="Matheny PB, Curtis JM, Hofstetter V, Aime MC, Moncalvo JM, Ge ZW, Slot JC, Ammirati JF, Baroni TJ, Bougher NL, Hughes KW, Lodge DJ, Kerrigan RW, Seidl MT, Aanen DK, DeNitis M, Daniele GM, Desjardin DE, Kropp BR, Norvell LL, Parker A, Vellinga EC, Vilgalys R, Hibbett DS. 2006. Major clades of Agaricales: a multilocus phylogenetic overview. Mycologia 98: 982 - 995." type="journal article" year="2006">
|
||
Matheny
|
||
<emphasis id="B97F866AFFD2FFDDFA913A35FAEB801D" box="[1287,1345,1329,1351]" italics="true" pageId="16" pageNumber="27">et al.</emphasis>
|
||
, 2006
|
||
</bibRefCitation>
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||
,
|
||
<bibRefCitation id="EF9A2789FFD2FFDDFCB13A57FCCA803D" author="Matheny PB & Moreau P-A & Vizzini A & Harrower E & De Haand A & Contu M & Curti M" box="[807,864,1360,1382]" pageId="16" pageNumber="27" pagination="28 - 41" refId="ref15118" refString="Matheny PB, Moreau P-A, Vizzini A, Harrower E, De Haand A, Contu M, Curti M. 2015. Crassisporium and Romagnesiella: two new genera of dark-spored Agaricales. Systematics and Biodiversity 13: 28 - 41." type="journal article" year="2015">2015</bibRefCitation>
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;
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<bibRefCitation id="EF9A2789FFD2FFDDFCFA3A57FBFA803E" author="Garnica S & Weiss M & Walther G & Oberwinkler F" box="[876,1104,1360,1382]" pageId="16" pageNumber="27" pagination="1019 - 1029" refId="ref13624" refString="Garnica S, Weiss M, Walther G, Oberwinkler F. 2007. Reconstructing the evolution of agarics from nuclear gene sequences and basidiospore ultrastructure. Mycological Research 9: 1019 - 1029." type="journal article" year="2007">
|
||
Garnica
|
||
<emphasis id="B97F866AFFD2FFDDFC583A57FBA3803E" box="[974,1033,1360,1381]" italics="true" pageId="16" pageNumber="27">et al.</emphasis>
|
||
, 2007
|
||
</bibRefCitation>
|
||
;
|
||
<bibRefCitation id="EF9A2789FFD2FFDDFBCA3A57FA99803E" author="Binder M & Larsson KH & Matheny PB & Hibbett DS" box="[1116,1331,1360,1382]" pageId="16" pageNumber="27" pagination="865 - 8880" refId="ref12475" refString="Binder M, Larsson KH, Matheny PB, Hibbett DS. 2010. Amylocorticiales ord. nov. and Jaapiales ord. nov.: early diverging clades of agaricomycetidae dominated by corticioid forms. Mycologia 201: 865 - 8880." type="journal article" year="2010">
|
||
Binder
|
||
<emphasis id="B97F866AFFD2FFDDFB243A57FB46803E" box="[1202,1260,1360,1381]" italics="true" pageId="16" pageNumber="27">et al.</emphasis>
|
||
, 2010
|
||
</bibRefCitation>
|
||
;
|
||
<bibRefCitation id="EF9A2789FFD2FFDDFAA93A57FC0180DF" author="Kohler A & Kuo A & Nagy LG & Morin E & Barry KW & Buscot F & Choi C & Cichocki N & Clum A & Colpaert J & Copeland A & Costa MD & Dore J & Floudas D & Gay G & Girlanda M & Henrissat B & Herrmann S & Hess J & Johansson T & Khouja H-R & LaButti K & Lahrmann U & Levasseur A & Lindquist EA & Lipzen A & Marmeisse R & Martino E & Murat C & Ngan CY & Nehls U & Plett JM & Pringle A & Ohm RA & Perotto S & Riley R & Rineau F & Ruytinx J & Salamov A & Shah F & Sun H & Tarkka M & Tritt A & Veneault-Fourrey C & Zuccaro A & Mycorrhizal GIC & Tunlid A & Grigoriev IV & Hibbett DS & Martin F" pageId="16" pageNumber="27" refId="ref14282" refString="Kohler A, Kuo A, Nagy LG, Morin E, Barry KW, Buscot F, Canb ack € B, Choi C, Cichocki N, Clum A, Colpaert J, Copeland A, Costa MD, Dore J, Floudas D, Gay G, Girlanda M, Henrissat B, Herrmann S, Hess J, H ogberg € N, Johansson T, Khouja H-R, LaButti K, Lahrmann U, Levasseur A, Lindquist EA, Lipzen A, Marmeisse R, Martino E, Murat C, Ngan CY, Nehls U, Plett JM, Pringle A, Ohm RA, Perotto S, Riley R, Rineau F, Ruytinx J, Salamov A, Shah F, Sun H, Tarkka M, Tritt A, Veneault-Fourrey C, Zuccaro A, Mycorrhizal GIC, Tunlid A, Grigoriev IV, Hibbett DS, Martin F. 2015. Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists. Nature Genetics." type="book" year="2015">
|
||
Kohler
|
||
<emphasis id="B97F866AFFD2FFDDFCB03A68FCCB80D8" box="[806,865,1390,1412]" italics="true" pageId="16" pageNumber="27">et al.</emphasis>
|
||
, 2015
|
||
</bibRefCitation>
|
||
). Many species in this lineage have basidiospores with a thickened, darkly pigmented wall (
|
||
<bibRefCitation id="EF9A2789FFD2FFDDFCB83AABFBB48099" author="Matheny PB & Curtis JM & Hofstetter V & Aime MC & Moncalvo JM & Ge ZW & Slot JC & Ammirati JF & Baroni TJ & Bougher NL & Hughes KW & Lodge DJ & Kerrigan RW & Seidl MT & Aanen DK & DeNitis M & Daniele GM & Desjardin DE & Kropp BR & Norvell LL & Parker A & Vellinga EC & Vilgalys R & Hibbett DS" box="[814,1054,1452,1474]" pageId="16" pageNumber="27" pagination="982 - 995" refId="ref15027" refString="Matheny PB, Curtis JM, Hofstetter V, Aime MC, Moncalvo JM, Ge ZW, Slot JC, Ammirati JF, Baroni TJ, Bougher NL, Hughes KW, Lodge DJ, Kerrigan RW, Seidl MT, Aanen DK, DeNitis M, Daniele GM, Desjardin DE, Kropp BR, Norvell LL, Parker A, Vellinga EC, Vilgalys R, Hibbett DS. 2006. Major clades of Agaricales: a multilocus phylogenetic overview. Mycologia 98: 982 - 995." type="journal article" year="2006">
|
||
Matheny
|
||
<emphasis id="B97F866AFFD2FFDDFC0B3AABFC7D809A" box="[925,983,1452,1473]" italics="true" pageId="16" pageNumber="27">et al.</emphasis>
|
||
, 2006
|
||
</bibRefCitation>
|
||
;
|
||
<bibRefCitation id="EF9A2789FFD2FFDDFBBC3AABFABA8099" author="Garnica S & Weiss M & Walther G & Oberwinkler F" box="[1066,1296,1452,1474]" pageId="16" pageNumber="27" pagination="1019 - 1029" refId="ref13624" refString="Garnica S, Weiss M, Walther G, Oberwinkler F. 2007. Reconstructing the evolution of agarics from nuclear gene sequences and basidiospore ultrastructure. Mycological Research 9: 1019 - 1029." type="journal article" year="2007">
|
||
Garnica
|
||
<emphasis id="B97F866AFFD2FFDDFB1B3AABFB62809A" box="[1165,1224,1452,1473]" italics="true" pageId="16" pageNumber="27">et al.</emphasis>
|
||
, 2007
|
||
</bibRefCitation>
|
||
). Although species producing dark-pigmented basidiospores do occur in a few other lineages (e.g.
|
||
<taxonomicName id="4C0B21FBFFD2FFDDFB5C3AEEFAD780A5" box="[1226,1405,1513,1534]" class="Agaricomycetes" family="Tricholomataceae" genus="Melanomphalia" kingdom="Fungi" order="Agaricales" pageId="16" pageNumber="27" phylum="Basidiomycota" rank="genus">
|
||
<emphasis id="B97F866AFFD2FFDDFB5C3AEEFAD780A5" box="[1226,1405,1513,1534]" italics="true" pageId="16" pageNumber="27">Melanomphalia</emphasis>
|
||
</taxonomicName>
|
||
), the vast majority of these have diversified within Agaricineae. The present study does not include exemplars from
|
||
<taxonomicName id="4C0B21FBFFD2FFDDFC593943FB7C8301" authority="Dumort" authorityName="Dumort" box="[975,1238,1604,1626]" class="Agaricomycetes" family="Nidulariaceae" higherTaxonomySource="CoL,GBIF" kingdom="Fungi" order="Agaricales" pageId="16" pageNumber="27" phylum="Basidiomycota" rank="family">Nidulariaceae Dumort</taxonomicName>
|
||
,
|
||
<taxonomicName id="4C0B21FBFFD2FFDDFB733943FBA68323" authority="R. Heim ex Pouzar" authorityName="Pouzar" class="Agaricomycetes" family="Cortinariaceae" kingdom="Fungi" order="Agaricales" pageId="16" pageNumber="27" phylum="Basidiomycota" rank="family">Cortinariaceae R. Heim ex Pouzar</taxonomicName>
|
||
,
|
||
<taxonomicName id="4C0B21FBFFD2FFDDFB8D3964FB0F8322" box="[1051,1189,1635,1657]" class="Agaricomycetes" family="Inocybaceae" kingdom="Fungi" order="Agaricales" pageId="16" pageNumber="27" phylum="Basidiomycota" rank="family">Inocybaceae</taxonomicName>
|
||
J ulich €, or
|
||
<taxonomicName id="4C0B21FBFFD2FFDDFABD3964FC0083CC" authority="Singer" authorityName="Singer" class="Agaricomycetes" family="Bolbitiaceae" kingdom="Fungi" order="Agaricales" pageId="16" pageNumber="27" phylum="Basidiomycota" rank="family">Bolbitiaceae Singer</taxonomicName>
|
||
but other studies support their placement here (
|
||
<bibRefCitation id="EF9A2789FFD2FFDDFCFE39A7FBFD83ED" author="Matheny PB & Curtis JM & Hofstetter V & Aime MC & Moncalvo JM & Ge ZW & Slot JC & Ammirati JF & Baroni TJ & Bougher NL & Hughes KW & Lodge DJ & Kerrigan RW & Seidl MT & Aanen DK & DeNitis M & Daniele GM & Desjardin DE & Kropp BR & Norvell LL & Parker A & Vellinga EC & Vilgalys R & Hibbett DS" box="[872,1111,1696,1718]" pageId="16" pageNumber="27" pagination="982 - 995" refId="ref15027" refString="Matheny PB, Curtis JM, Hofstetter V, Aime MC, Moncalvo JM, Ge ZW, Slot JC, Ammirati JF, Baroni TJ, Bougher NL, Hughes KW, Lodge DJ, Kerrigan RW, Seidl MT, Aanen DK, DeNitis M, Daniele GM, Desjardin DE, Kropp BR, Norvell LL, Parker A, Vellinga EC, Vilgalys R, Hibbett DS. 2006. Major clades of Agaricales: a multilocus phylogenetic overview. Mycologia 98: 982 - 995." type="journal article" year="2006">
|
||
Matheny
|
||
<emphasis id="B97F866AFFD2FFDDFC4039A6FBBA83EE" box="[982,1040,1696,1718]" italics="true" pageId="16" pageNumber="27">et al.</emphasis>
|
||
, 2006
|
||
</bibRefCitation>
|
||
,
|
||
<bibRefCitation id="EF9A2789FFD2FFDDFBF539A7FB3683ED" author="Matheny PB & Moreau P-A & Vizzini A & Harrower E & De Haand A & Contu M & Curti M" box="[1123,1180,1696,1718]" pageId="16" pageNumber="27" pagination="28 - 41" refId="ref15118" refString="Matheny PB, Moreau P-A, Vizzini A, Harrower E, De Haand A, Contu M, Curti M. 2015. Crassisporium and Romagnesiella: two new genera of dark-spored Agaricales. Systematics and Biodiversity 13: 28 - 41." type="journal article" year="2015">2015</bibRefCitation>
|
||
;
|
||
<bibRefCitation id="EF9A2789FFD2FFDDFB3139A7FAD583ED" author="Binder M & Larsson KH & Matheny PB & Hibbett DS" box="[1191,1407,1696,1718]" pageId="16" pageNumber="27" pagination="865 - 8880" refId="ref12475" refString="Binder M, Larsson KH, Matheny PB, Hibbett DS. 2010. Amylocorticiales ord. nov. and Jaapiales ord. nov.: early diverging clades of agaricomycetidae dominated by corticioid forms. Mycologia 201: 865 - 8880." type="journal article" year="2010">
|
||
Binder
|
||
<emphasis id="B97F866AFFD2FFDDFB6B39A6FA9D83EE" box="[1277,1335,1696,1718]" italics="true" pageId="16" pageNumber="27">et al.</emphasis>
|
||
, 2010
|
||
</bibRefCitation>
|
||
).
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |