188 lines
16 KiB
XML
188 lines
16 KiB
XML
<document id="2013208F250F456FF792E94B64D660CA" ID-CLB-Dataset="300094" ID-DOI="10.12651/JSR.2021.10.2.117" ID-GBIF-Dataset="c0ffd0bd-9478-41d5-ba4e-8107e38e6a59" ID-ISSN="2713-8615" ID-Zenodo-Dep="12753253" IM.bibliography_approvedBy="carolina" IM.illustrations_approvedBy="carolina" IM.materialsCitations_approvedBy="carolina" IM.metadata_approvedBy="carolina" IM.tables_approvedBy="carolina" IM.taxonomicNames_approvedBy="carolina" IM.treatments_approvedBy="carolina" checkinTime="1721182659963" checkinUser="felipe" docAuthor="Kang, Heeyoung, Kim, Haneul, Yi, Hana, Kim, Wonyong, Yoon, Jung-Hoon, Im, Wan-Taek, Kim, Myung Kyum, Seong, Chi Nam, Kim, Seung Bum, Cha, Chang-Jun & Joh, Che Ok Jeon and Kiseong" docDate="2021" docId="276A87D9FFE7FFB6BECAFE500326AA99" docLanguage="en" docName="JSpeciesRes.10.2.117-133.pdf" docOrigin="Journal of Species Research 10 (2)" docStyle="DocumentStyle:4D398BFF45FF8CA9E08F546BB06AE372.2:JSpeciesRes.2012-.journal_article" docStyleId="4D398BFF45FF8CA9E08F546BB06AE372" docStyleName="JSpeciesRes.2012-.journal_article" docStyleVersion="2" docTitle="Cytobacillus depressus" docType="treatment" docVersion="4" lastPageNumber="127" masterDocId="DB53FFA1FFEDFFBCBE64FF970107A96D" masterDocTitle="A report of 43 unrecorded bacterial species within the phyla Bacteroidetes and Firmicutes isolated from various sources from Korea in 2019" masterLastPageNumber="133" masterPageNumber="117" pageNumber="127" updateTime="1721749527620" updateUser="ExternalLinkService" zenodo-license-document="CC-BY-4.0">
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<mods:title id="977927FC1986BCE1709BF6E009B81DCE">A report of 43 unrecorded bacterial species within the phyla Bacteroidetes and Firmicutes isolated from various sources from Korea in 2019</mods:title>
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<mods:namePart id="50E2333BBB71D0513B3A7280C7E5208B">Kang, Heeyoung</mods:namePart>
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<mods:affiliation id="7F0C91838CC24A466D83DF4D6A4C2A56">Department of Bioscience and Biotechnology, Hankuk University of Foreign Studies, Yongin 17035, Republic of Korea</mods:affiliation>
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<mods:namePart id="4DE5FA76AA56942C361BCE407DC8B448">Kim, Haneul</mods:namePart>
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<mods:affiliation id="1CFD6D5CBB025447A63780DA7D159300">Department of Bioscience and Biotechnology, Hankuk University of Foreign Studies, Yongin 17035, Republic of Korea</mods:affiliation>
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<mods:namePart id="C67CA6E08F64BD962804077A19024C4F">Yi, Hana</mods:namePart>
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<mods:affiliation id="CE5D680B5F865CB188ED3AFD517228D0">School of Biosystem and Biomedical Science, Korea University, Seoul 02841, Republic of Korea</mods:affiliation>
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<mods:namePart id="EE08B8B584419188BDAED2B60CD009F3">Kim, Wonyong</mods:namePart>
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<mods:affiliation id="AA451065BDFB243DA1182FE8A13A6E7A">Department of Microbiology, Chung-Ang University College of Medicine, Seoul 06973, Republic of Korea</mods:affiliation>
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<mods:namePart id="BD22BB95258E112E226365C868D04765">Yoon, Jung-Hoon</mods:namePart>
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<mods:affiliation id="C8B949B38AF88CDADABEE034FC029401">Department of Food Science and Biotechnology, Sungkyunkwan University, Jangan-gu, Suwon 16419, Republic of Korea</mods:affiliation>
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<mods:namePart id="BD03907491EC109056C99A559E495EEF">Im, Wan-Taek</mods:namePart>
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<mods:affiliation id="910D514C62FFFD10E849BEDFCE107103">Department of Biotechnology, Hankyong National University, Anseong 17579, Republic of Korea</mods:affiliation>
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<mods:namePart id="1CAF65F8A9DF34ACE6D3CC3291FFF3AA">Kim, Myung Kyum</mods:namePart>
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<mods:affiliation id="46AF5AEF8016CEF75CBE4DA2933AF5CA">Department of Bio & Environmental Technology, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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<mods:namePart id="179B5FB3F9AD285F71BDD0A193EC48B4">Seong, Chi Nam</mods:namePart>
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<mods:affiliation id="445BA7A65958CF7E9995F5ECF53D697D">Department of Biology, Sunchon National University, Suncheon 57922, Republic of Korea</mods:affiliation>
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<mods:namePart id="8EF1ECDD51ADF1ECA45427C0E5463258">Kim, Seung Bum</mods:namePart>
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<mods:affiliation id="1717C30C9B2B74F4449CDF0C4C3F520C">Department of Microbiology, Chungnam National University, Daejeon 34134, Republic of Korea</mods:affiliation>
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<mods:namePart id="17B6B77A748F15117AEFB5ABCCA9D2AF">Cha, Chang-Jun</mods:namePart>
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<mods:affiliation id="F37D431A71F13E1F97A27653F78C10A9">Department of Systems Biotechnology, Chung-Ang University, Anseong 17546, Republic of Korea & Department of Life Science, Chung-Ang University, Seoul 06974, Republic of Korea & Department of Bioscience and Biotechnology, Hankuk University of Foreign Studies, Yongin 17035, Republic of Korea</mods:affiliation>
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<mods:namePart id="A975E5216E9A17E4DDD2E51CD758A1A4">Joh, Che Ok Jeon and Kiseong</mods:namePart>
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<mods:title id="FC11162AC095EBEEAA4F151C68D6CE07">Journal of Species Research</mods:title>
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<mods:part id="8A351AB91BE612F8EFF511A1CDE43667">
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<mods:date id="D188316C95CAECD737CF9DC76328FF28">2021</mods:date>
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<mods:number id="92FFC3916F0376FFFD101B104446E7D4">2021-05-31</mods:number>
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<mods:number id="0DC754E81F112F7CB5467B9711AAE6B0">10</mods:number>
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<mods:start id="4F812CFC921E3DD1B36BC80E4DA1A1EC">117</mods:start>
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<treatment id="276A87D9FFE7FFB6BECAFE500326AA99" ID-DOI="http://doi.org/10.5281/zenodo.12801667" ID-Zenodo-Dep="12801667" LSID="urn:lsid:plazi:treatment:276A87D9FFE7FFB6BECAFE500326AA99" httpUri="http://treatment.plazi.org/id/276A87D9FFE7FFB6BECAFE500326AA99" lastPageNumber="127" pageId="10" pageNumber="127">
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<subSubSection id="E7D96544FFE7FFB6BECAFE500383A8B2" box="[174,644,454,479]" pageId="10" pageNumber="127" type="nomenclature">
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<paragraph id="AF7C36CFFFE7FFB6BECAFE500383A8B2" blockId="10.[174,644,454,479]" box="[174,644,454,479]" pageId="10" pageNumber="127">
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<heading id="F43481A3FFE7FFB6BECAFE500383A8B2" box="[174,644,454,479]" fontSize="10" level="2" pageId="10" pageNumber="127" reason="5">
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<emphasis id="9DB7EADDFFE7FFB6BECAFE500383A8B2" bold="true" box="[174,644,454,479]" pageId="10" pageNumber="127">
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Description of
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<taxonomicName id="68C34D4CFFE7FFB6BF31FE510348A8B3" authority="(Patel and Gupta, 2020)" baseAuthorityName="Patel and Gupta" baseAuthorityYear="2020" box="[341,591,454,478]" class="Bacilli" family="Bacillaceae" genus="Cytobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Bacillales" pageId="10" pageNumber="127" phylum="Firmicutes" rank="species" species="depressus">
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<emphasis id="9DB7EADDFFE7FFB6BF31FE510348A8B3" bold="true" box="[341,591,454,478]" italics="true" pageId="10" pageNumber="127">Cytobacillus depressus</emphasis>
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</taxonomicName>
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<collectionCode id="C9D2AE0AFFE7FFB6BC32FE50036EA8B2" box="[598,617,455,479]" country="Chile" name="Departamento de Geologia, Universidad de Chile" pageId="10" pageNumber="127">R</collectionCode>
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20
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</emphasis>
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</heading>
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</paragraph>
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</subSubSection>
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<subSubSection id="E7D96544FFE7FFB6BEA1FE6F0306AADE" pageId="10" pageNumber="127" type="description">
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<paragraph id="AF7C36CFFFE7FFB6BEA1FE6F0306AADE" blockId="10.[174,779,504,1012]" pageId="10" pageNumber="127">
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Gram-stain-positive, aerobic, flagellated, rod-shaped bacterium (0.5-0.6 μm wide, 1.3-1.5 μm long). Colonies grown on
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<specimenCode id="FF659EB4FFE7FFB6BF44FDAF003AAB3D" box="[288,317,568,592]" collectionCode="R" country="Chile" name="Departamento de Geologia, Universidad de Chile" pageId="10" pageNumber="127">R2</specimenCode>
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A agar are light yellow and circular.
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<location id="AA1C6014FFE7FFB6BCBDFDAF01DAAB1D" LSID="urn:lsid:plazi:treatment:276A87D9FFE7FFB6BECAFE500326AA99:AA1C6014FFE7FFB6BCBDFDAF01DAAB1D" country="South Korea" county="Jeongseon" latitude="37.260666" longLatPrecision="1" longitude="128.60797" municipality="In" name="Oxidase" pageId="10" pageNumber="127">Oxidase</location>
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activity is positive.
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<collectingMunicipality id="4F18ACB5FFE7FFB6BFD2FDCE00CBAB1D" box="[438,460,601,624]" pageId="10" pageNumber="127">In</collectingMunicipality>
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API 20NE test, nitrate reduction; urease activity; and gelatin hydrolysis, but negative for indole production; glucose fermentation; aesculin hydrolysis; activity of arginine dihydrolase and
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<emphasis id="9DB7EADDFFE7FFB6BCABFD2E03D9ABBC" box="[719,734,697,721]" italics="true" pageId="10" pageNumber="127">β</emphasis>
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-galactosidase; and assimilation of D- glucose, L- arabinose,
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<subScript id="3347348AFFE7FFB6BECAFC9701C4AA7C" attach="none" box="[174,195,762,785]" fontSize="7" pageId="10" pageNumber="127">D-</subScript>
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mannose,
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<subScript id="3347348AFFE7FFB6BF51FC97004DAA7F" attach="right" box="[309,330,762,786]" fontSize="7" pageId="10" pageNumber="127">D-</subScript>
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mannitol,
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<emphasis id="9DB7EADDFFE7FFB6BFD8FD6D00C9AA7C" box="[444,462,762,785]" italics="true" pageId="10" pageNumber="127">N</emphasis>
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-acetyl-glucosamine,
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<subScript id="3347348AFFE7FFB6BCDFFC9703C8AA7F" attach="right" box="[699,719,762,786]" fontSize="7" pageId="10" pageNumber="127">D-</subScript>
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maltose, potassium gluconate, capric acid, adipic acid, malic acid, trisodium citrate, and phenylacetic acid.
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<taxonomicName id="68C34D4CFFE7FFB6BCAFFCAD020CAA3F" box="[715,779,826,850]" family="Strain" pageId="10" pageNumber="124" rank="family">Strain</taxonomicName>
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<specimenCode id="FF659EB4FFE7FFB6BECAFCCC01DCAA1E" box="[174,219,859,883]" collectionCode="R" country="Chile" name="Departamento de Geologia, Universidad de Chile" pageId="10" pageNumber="127">R20</specimenCode>
|
||
(
|
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<emphasis id="9DB7EADDFFE7FFB6BE88FCCD0007AA1F" bold="true" box="[236,256,858,882]" pageId="10" pageNumber="127">=</emphasis>
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||
NIBRBAC000503217) was isolated from a soil sample collected from
|
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<collectingCounty id="461D4E43FFE7FFB6BFD0FCEC032DAAFE" box="[436,554,891,915]" pageId="10" pageNumber="127">Jeongseon</collectingCounty>
|
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,
|
||
<collectingCountry id="D7D4765FFFE7FFB6BC5CFCEC020DAAFF" box="[568,778,891,915]" name="South Korea" pageId="10" pageNumber="127">Republic of Korea</collectingCountry>
|
||
(
|
||
<geoCoordinate id="CAF75008FFE7FFB6BED2FC0C004CAADE" box="[182,331,922,948]" degrees="37" direction="north" minutes="15" orientation="latitude" pageId="10" pageNumber="127" precision="1" seconds="38.4" value="37.260666">
|
||
37°15
|
||
<emphasis id="9DB7EADDFFE7FFB6BE93FC0D01FAAAD9" bold="true" box="[247,253,922,948]" italics="true" pageId="10" pageNumber="127">ʹ</emphasis>
|
||
38.4
|
||
<emphasis id="9DB7EADDFFE7FFB6BF4FFC0D0032AAD9" bold="true" box="[299,309,922,948]" italics="true" pageId="10" pageNumber="127">ʺ</emphasis>
|
||
N
|
||
</geoCoordinate>
|
||
,
|
||
<geoCoordinate id="CAF75008FFE7FFB6BF32FC0C00F2AADE" box="[342,501,922,948]" degrees="128" direction="east" minutes="36" orientation="longitude" pageId="10" pageNumber="127" precision="1" seconds="28.7" value="128.60797">
|
||
128°36
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||
<emphasis id="9DB7EADDFFE7FFB6BFC7FC0D00AEAAD9" bold="true" box="[419,425,922,948]" italics="true" pageId="10" pageNumber="127">ʹ</emphasis>
|
||
28.7
|
||
<emphasis id="9DB7EADDFFE7FFB6BFB3FC0D00E6AAD9" bold="true" box="[471,481,922,948]" italics="true" pageId="10" pageNumber="127">ʺ</emphasis>
|
||
E
|
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</geoCoordinate>
|
||
).
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="E7D96544FFE7FFB6BEA1FC2C0326AA99" pageId="10" pageNumber="127" type="reference_group">
|
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<paragraph id="AF7C36CFFFE7FFB6BEA1FC2C0326AA99" blockId="10.[174,779,504,1012]" pageId="10" pageNumber="127">
|
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<taxonomicName id="68C34D4CFFE7FFB6BEA1FC2C0091AABE" box="[197,406,955,979]" class="Bacilli" family="Bacillaceae" genus="Bacillus" kingdom="Bacteria" order="Bacillales" pageId="10" pageNumber="127" phylum="Firmicutes" rank="species" species="depressus">
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||
<emphasis id="9DB7EADDFFE7FFB6BEA1FC2C0091AABE" box="[197,406,955,979]" italics="true" pageId="10" pageNumber="127">Bacillus depressus</emphasis>
|
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</taxonomicName>
|
||
was reclassified as
|
||
<taxonomicName id="68C34D4CFFE7FFB6BC1AFC2C031AAA99" authority="(Patel and Gupta, 2020)" baseAuthorityName="Patel and Gupta" baseAuthorityYear="2020" class="Bacilli" family="Bacillaceae" genus="Cytobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Bacillales" pageId="10" pageNumber="127" phylum="Firmicutes" rank="species" species="depressus">
|
||
<emphasis id="9DB7EADDFFE7FFB6BC1AFC2C0011AA9E" italics="true" pageId="10" pageNumber="127">Cytobacillus depressus</emphasis>
|
||
(
|
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<bibRefCitation id="CB524B3EFFE7FFB6BF46FC4B0312AA99" author="Patel, S. & R. S. Gupta" box="[290,533,988,1012]" pageId="10" pageNumber="127" pagination="406 - 438" refId="ref11885" refString="Patel, S. and R. S. Gupta. 2020. A phylogenomic and comparative genomic framework for resolving the polyphyly of the genus Bacillus: Proposal for six new genera of Bacillus species, Peribacillus gen. nov., Cytobacillus gen. nov., Mesobacillus gen. nov., Neobacillus gen. nov., Metabacillus gen. nov. and Alkalihalobacillus gen. nov. International Journal of Systematic and Evolutionary Microbiology 70 (1): 406 - 438." type="journal article" year="2020">Patel and Gupta, 2020</bibRefCitation>
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)
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</taxonomicName>
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.
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</paragraph>
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</subSubSection>
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</treatment>
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</document> |