874 lines
97 KiB
XML
874 lines
97 KiB
XML
<document id="DF73C08485CF7E5720CE5B48CF3088C4" ID-CLB-Dataset="31861" ID-DOI="10.11646/zootaxa.4329.6.3" ID-GBIF-Dataset="51ee42c6-c729-4a4f-9c3b-20d928ff3f2b" ID-ISSN="1175-5326" ID-Zenodo-Dep="1008866" ID-ZooBank="1E2Ae5Ce-Ae17-4657-Aa32-6763Ff42C4Bc" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_requiresApprovalFor="existingObjects,plazi" IM.taxonomicNames_approvedBy="felipe" checkinTime="1507704995921" checkinUser="plazi" docAuthor="Hwang, Ui Wook" docDate="2017" docId="E77F1915BC437E2AFF5F8A8F297A540E" docLanguage="en" docName="zootaxa.4329.6.3.pdf.imf" docOrigin="Zootaxa 4329 (6)" docStyle="DocumentStyle:647186512141C8FC8976D5BCC54AEB7D.9:Zootaxa.2013-.journal_article" docStyleId="647186512141C8FC8976D5BCC54AEB7D" docStyleName="Zootaxa.2013-.journal_article" docStyleVersion="9" docTitle="Anaulaciulus koreanus" docType="treatment" docVersion="7" lastPageNumber="580" masterDocId="1B46616DBC417E2DFFC8895D2D17552C" masterDocTitle="The complete mitochondrial genome of the Korean endemic millipede Anaulaciulus koreanus (Verhoeff, 1937), with notes on the gene arrangement of millipede orders" masterLastPageNumber="583" masterPageNumber="574" pageNumber="576" updateTime="1698469417167" updateUser="ExternalLinkService">
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<mods:titleInfo id="9B4554065A2ECCCE7BE4D68CA411EFC9">
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<mods:title id="D78B2FEF74352823D34A5E1F6DFA05BA">The complete mitochondrial genome of the Korean endemic millipede Anaulaciulus koreanus (Verhoeff, 1937), with notes on the gene arrangement of millipede orders</mods:title>
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</mods:titleInfo>
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<mods:name id="333E2B71676E29483D6FB52976AA8BE2" type="personal">
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</mods:role>
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<mods:namePart id="A0524111101B5F34FF7E321C66D32205">Hwang, Ui Wook</mods:namePart>
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<mods:title id="0765853458CF256F797E68B154711B42">Zootaxa</mods:title>
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</mods:titleInfo>
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<mods:part id="E26E3865658B47C7820A519A3B5966E0">
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<mods:date id="86AB30315AE7D131F6E870F0DE10D20D">2017</mods:date>
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<mods:detail id="81526DFCBCC4B9FA5EACC28221E4867A" type="pubDate">
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<mods:number id="4B699B645E470A5A6B4CAB972D849556">2017-10-10</mods:number>
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<mods:detail id="8A692A2B0718E73F01D5EA1D1D6CCFE3" type="volume">
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<mods:number id="AFE14EF5D1BFDA321C9F416ECA033C96">4329</mods:number>
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<mods:detail id="773DEB2A62BE8A9A886BB38FF5022ACE" type="issue">
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<mods:number id="B531F989C625D00A74E4492486056C45">6</mods:number>
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<mods:classification id="F375E32F5BB187F6D10B8DBBDD5784AE">journal article</mods:classification>
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<mods:identifier id="7985AD7C960D13DBA0EA44C1146521EA" type="DOI">10.11646/zootaxa.4329.6.3</mods:identifier>
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<mods:identifier id="37818D52C8E224D34B231A2CA5716142" type="ISSN">1175-5326</mods:identifier>
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</mods:mods>
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<treatment id="E77F1915BC437E2AFF5F8A8F297A540E" ID-DOI="http://doi.org/10.5281/zenodo.5658547" ID-GBIF-Taxon="135435029" ID-Zenodo-Dep="5658547" LSID="urn:lsid:plazi:treatment:E77F1915BC437E2AFF5F8A8F297A540E" httpUri="http://treatment.plazi.org/id/E77F1915BC437E2AFF5F8A8F297A540E" lastPageId="7" lastPageNumber="580" pageId="2" pageNumber="576">
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<subSubSection id="27CCFB88BC437E2FFF5F8A8F2EE256C7" box="[151,1013,978,1003]" pageId="2" pageNumber="576" type="nomenclature">
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<paragraph id="6F69A803BC437E2FFF5F8A8F2EE256C7" blockId="2.[151,1437,978,1444]" box="[151,1013,978,1003]" pageId="2" pageNumber="576">
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<emphasis id="5DA27411BC437E2FFF5F8A8F2EE256C7" bold="true" box="[151,1013,978,1003]" pageId="2" pageNumber="576">
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Characterization of the complete mitochondrial genome of
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<taxonomicName id="A8D6D380BC437E2FFC958A8F2EE756C7" ID-CoL="DJLF" baseAuthorityName="Verhoeff" baseAuthorityYear="1937" box="[861,1008,978,1003]" class="Diplopoda" family="Julidae" genus="Anaulaciulus" kingdom="Animalia" order="Julida" pageId="2" pageNumber="576" phylum="Arthropoda" rank="species" species="koreanus">A. koreanus</taxonomicName>
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.
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</emphasis>
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</paragraph>
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</subSubSection>
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<subSubSection id="27CCFB88BC437E28FC358A8F2FFD51EC" lastPageId="5" lastPageNumber="579" pageId="2" pageNumber="576" type="description">
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<paragraph id="6F69A803BC437E2FFC358A8F2CD2508F" blockId="2.[151,1437,978,1444]" pageId="2" pageNumber="576">
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The complete mitochondrial genome sequence of
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<taxonomicName id="A8D6D380BC437E2FFEE18AAA2CA65123" baseAuthorityName="Verhoeff" baseAuthorityYear="1937" box="[297,433,1014,1039]" class="Diplopoda" family="Julidae" genus="Anaulaciulus" kingdom="Animalia" order="Julida" pageId="2" pageNumber="576" phylum="Arthropoda" rank="species" species="koreanus">
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<emphasis id="5DA27411BC437E2FFEE18AAA2CA65123" box="[297,433,1014,1039]" italics="true" pageId="2" pageNumber="576">A. koreanus</emphasis>
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</taxonomicName>
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is 14,916 bp in length. It is within the range of other diplopod mitochondrial genome lengths from 14,747 bp to 15,282 bp (
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<tableCitation id="22549DB8BC437E2FFD9B8D472FBA511F" box="[595,685,1050,1075]" captionStart="TABLE 2" captionStartId="2.[151,239,1487,1510]" captionTargetBox="[160,1349,1569,2005]" captionText="TABLE 2. The whole mitochondrial genome lengths and A + T / G + C contents of ten millipede species examined in the present study" httpUri="http://table.plazi.org/id/3BA9F88BBC437E2FFF5F8C922C33532A" pageId="2" pageNumber="576" tableUuid="3BA9F88BBC437E2FFF5F8C922C33532A">Table 2</tableCitation>
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). The mitochondrial genome of
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<taxonomicName id="A8D6D380BC437E2FFBEC8D4629BB511F" baseAuthorityName="Verhoeff" baseAuthorityYear="1937" box="[1060,1196,1050,1075]" class="Diplopoda" family="Julidae" genus="Anaulaciulus" kingdom="Animalia" order="Julida" pageId="2" pageNumber="576" phylum="Arthropoda" rank="species" species="koreanus">
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<emphasis id="5DA27411BC437E2FFBEC8D4629BB511F" box="[1060,1196,1050,1075]" italics="true" pageId="2" pageNumber="576">A. koreanus</emphasis>
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</taxonomicName>
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contains 13 proteincoding genes, two ribosomal RNA genes (
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<emphasis id="5DA27411BC437E2FFDBC8D622FF2517A" box="[628,741,1087,1111]" italics="true" pageId="2" pageNumber="576">12S rRNA</emphasis>
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and
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<emphasis id="5DA27411BC437E2FFCD48D632E99517A" box="[796,910,1086,1111]" italics="true" pageId="2" pageNumber="576">16S rRNA</emphasis>
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), and 22 transfer RNA genes (
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<figureCitation id="F7EDB486BC437E2FFB2F8D63283D517B" box="[1255,1322,1086,1111]" captionStart="FIGURE 1" captionStartId="3.[151,250,1523,1545]" captionTargetBox="[212,1376,255,1444]" captionTargetId="figure@3.[188,1398,235,1456]" captionTargetPageId="3" captionText="FIGURE 1. The mitochondrial genome structures of Anaulaciulus koreanus (Verhoeff, 1937). The direction of transcription for each gene is shown by an arrow. The hatch-marked area is a large non-coding region." httpUri="https://zenodo.org/record/1008868/files/figure.png" pageId="2" pageNumber="576">Fig. 1</figureCitation>
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,
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<tableCitation id="22549DB8BC437E2FFAF08D63289A517B" box="[1336,1421,1086,1111]" captionStart="TABLE 3" captionStartId="4.[151,239,152,175]" captionText="TABLE 3. Annotation and gene organization of the complete mitochondrial genome of Anaulaciulus koreanus" pageId="2" pageNumber="576">Table 3</tableCitation>
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). The mitochondrial genes are arranged in the following 5’ – 3’ order (underlined genes are translated from the opposite strand):
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<emphasis id="5DA27411BC437E2FFE948DD72CBE51B8" box="[348,425,1158,1185]" italics="true" pageId="2" pageNumber="576">tRNA Ile</emphasis>
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,
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<emphasis id="5DA27411BC437E2FFE718DD72F1951B8" box="[441,526,1158,1185]" italics="true" pageId="2" pageNumber="576">tRNA Met</emphasis>
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,
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<emphasis id="5DA27411BC437E2FFDD28DD72F58518E" box="[538,591,1162,1186]" italics="true" pageId="2" pageNumber="576">ND2</emphasis>
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,
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<emphasis id="5DA27411BC437E2FFD968DD72FB951B8" box="[606,686,1158,1185]" italics="true" pageId="2" pageNumber="576">tRNA Trp</emphasis>
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,
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<emphasis id="5DA27411BC437E2FFD778DD72E1A51B8" box="[703,781,1158,1185]" italics="true" pageId="2" pageNumber="576">tRNA Cy</emphasis>
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s,
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<emphasis id="5DA27411BC437E2FFCEB8DD72E44518D" box="[803,851,1162,1185]" italics="true" pageId="2" pageNumber="576">COI</emphasis>
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,
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<emphasis id="5DA27411BC437E2FFCAA8DD72E80518D" box="[866,919,1162,1185]" italics="true" pageId="2" pageNumber="576">COII</emphasis>
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,
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<emphasis id="5DA27411BC437E2FFC6D8DD72EE151B8" box="[933,1014,1158,1185]" italics="true" pageId="2" pageNumber="576">tRNA Lys</emphasis>
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,
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||
<emphasis id="5DA27411BC437E2FFBCD8DD7294E51B8" box="[1029,1113,1158,1185]" italics="true" pageId="2" pageNumber="576">tRNA Asp</emphasis>
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,
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||
<emphasis id="5DA27411BC437E2FFBAF8DD42988518E" box="[1127,1183,1161,1186]" italics="true" pageId="2" pageNumber="576">ATP8</emphasis>
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||
,
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||
<emphasis id="5DA27411BC437E2FFB678DD429FF518E" box="[1199,1256,1161,1186]" italics="true" pageId="2" pageNumber="576">ATP6</emphasis>
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,
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||
<emphasis id="5DA27411BC437E2FFB3F8DD72821518D" box="[1271,1334,1162,1185]" italics="true" pageId="2" pageNumber="576">COIII</emphasis>
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||
,
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<emphasis id="5DA27411BC437E2FFA8C8DD7288151B8" box="[1348,1430,1158,1185]" italics="true" pageId="2" pageNumber="576">tRNA Gly</emphasis>
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||
,
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<emphasis id="5DA27411BC437E2FFF5F8DED2DD051E5" box="[151,199,1200,1225]" italics="true" pageId="2" pageNumber="576">ND3</emphasis>
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||
,
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||
<emphasis id="5DA27411BC437E2FFF1D8DEC2C0551E4" box="[213,274,1201,1224]" italics="true" pageId="2" pageNumber="576">tRNA</emphasis>
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||
<taxonomicName id="A8D6D380BC437E2FFEDA8DF02C305197" box="[274,295,1197,1211]" class="Malacostraca" family="Majidae" genus="Ala" kingdom="Animalia" order="Decapoda" pageId="2" pageNumber="576" phylum="Arthropoda" rank="genus">
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||
<emphasis id="5DA27411BC437E2FFEDA8DF02C305197" box="[274,295,1197,1211]" italics="true" pageId="2" pageNumber="576">Ala</emphasis>
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</taxonomicName>
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||
,
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||
<emphasis id="5DA27411BC437E2FFEFE8DEC2C9E5197" box="[310,393,1197,1224]" italics="true" pageId="2" pageNumber="576">tRNA Arg</emphasis>
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,
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<emphasis id="5DA27411BC437E2FFE5F8DEC2CFC5197" box="[407,491,1197,1224]" italics="true" pageId="2" pageNumber="576">tRNA Asn</emphasis>
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,
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<emphasis id="5DA27411BC437E2FFE3E8DEC2F715197" box="[502,614,1197,1224]" italics="true" pageId="2" pageNumber="576">tRNA Ser(AGN)</emphasis>
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,
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<emphasis id="5DA27411BC437E2FFDBD8DEC2FDF5197" box="[629,712,1197,1224]" italics="true" pageId="2" pageNumber="576">tRNA Glu</emphasis>
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,
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<emphasis id="5DA27411BC437E2FFD1F8DED2E1051E5" box="[727,775,1200,1225]" italics="true" pageId="2" pageNumber="576">ND6</emphasis>
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,
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<emphasis id="5DA27411BC437E2FFCDD8DED2E5D51E5" box="[789,842,1200,1225]" italics="true" pageId="2" pageNumber="576">Cytb</emphasis>
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,
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<emphasis id="5DA27411BC437E2FFC908DEC2EDE5197" box="[856,969,1197,1224]" italics="true" pageId="2" pageNumber="576">tRNA Ser(UCN)</emphasis>
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,
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<emphasis id="5DA27411BC437E2FFC118DEC293B5197" box="[985,1068,1197,1224]" italics="true" pageId="2" pageNumber="576">tRNA Gln</emphasis>
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,
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<emphasis id="5DA27411BC437E2FFBF48DEC299C5197" box="[1084,1163,1197,1224]" italics="true" pageId="2" pageNumber="576">tRNA Tyr</emphasis>
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,
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<emphasis id="5DA27411BC437E2FFB538DEC29F85197" box="[1179,1263,1197,1224]" italics="true" pageId="2" pageNumber="576">tRNA Phe</emphasis>
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,
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<emphasis id="5DA27411BC437E2FFB368DEC282351E4" box="[1278,1332,1201,1224]" italics="true" pageId="2" pageNumber="576">ND5</emphasis>
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,
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<emphasis id="5DA27411BC437E2FFA8B8DEC28835197" box="[1347,1428,1197,1224]" italics="true" pageId="2" pageNumber="576">tRNA His</emphasis>
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,
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<emphasis id="5DA27411BC437E2FFF5F8D8A2DDB51C3" box="[151,204,1239,1263]" italics="true" pageId="2" pageNumber="576">ND4</emphasis>
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,
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<emphasis id="5DA27411BC437E2FFF298D8A2C3251C3" box="[225,293,1239,1263]" italics="true" pageId="2" pageNumber="576">ND4L</emphasis>
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,
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<emphasis id="5DA27411BC437E2FFEF38D8A2C9B51CE" box="[315,396,1236,1262]" italics="true" pageId="2" pageNumber="576">tRNA Thr</emphasis>
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,
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<emphasis id="5DA27411BC437E2FFE698D8A2CE251CE" box="[417,501,1236,1262]" italics="true" pageId="2" pageNumber="576">tRNA Pro</emphasis>
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,
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<emphasis id="5DA27411BC437E2FFDC28D8A2F2951C3" box="[522,574,1239,1263]" italics="true" pageId="2" pageNumber="576">ND1</emphasis>
|
||
,
|
||
<emphasis id="5DA27411BC437E2FFD9C8D8A2FC551CE" box="[596,722,1236,1262]" italics="true" pageId="2" pageNumber="576">tRNA Leu(UUR)</emphasis>
|
||
,
|
||
<emphasis id="5DA27411BC437E2FFD2F8D8A2E7351CE" box="[743,868,1236,1262]" italics="true" pageId="2" pageNumber="576">tRNA Leu(CUN)</emphasis>
|
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,
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<emphasis id="5DA27411BC437E2FFCB28D8B2EE551C2" box="[890,1010,1238,1263]" italics="true" pageId="2" pageNumber="576">16S rRNA</emphasis>
|
||
,
|
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<emphasis id="5DA27411BC437E2FFBCF8D8A294251CE" box="[1031,1109,1236,1262]" italics="true" pageId="2" pageNumber="576">tRNA Ľal</emphasis>
|
||
, and
|
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<emphasis id="5DA27411BC437E2FFB6B8D8A280C51C2" box="[1187,1307,1239,1263]" italics="true" pageId="2" pageNumber="576">12S rRNA</emphasis>
|
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. The base composition of the heavy strand that encodes the majority of genes in the mitochondrial genome of
|
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<taxonomicName id="A8D6D380BC437E2FFB348DA128965038" baseAuthorityName="Verhoeff" baseAuthorityYear="1937" box="[1276,1409,1275,1300]" class="Diplopoda" family="Julidae" genus="Anaulaciulus" kingdom="Animalia" order="Julida" pageId="2" pageNumber="576" phylum="Arthropoda" rank="species" species="koreanus">
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<emphasis id="5DA27411BC437E2FFB348DA128965038" box="[1276,1409,1275,1300]" italics="true" pageId="2" pageNumber="576">A. koreanus</emphasis>
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</taxonomicName>
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is 36.1% adenine, 39.0% thymine, 14.0% cytosine, and 10.9% guanine, with a total A+T content of 75.1%. The overall A+T content of
|
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<taxonomicName id="A8D6D380BC437E2FFE558C192F375070" baseAuthorityName="Verhoeff" baseAuthorityYear="1937" box="[413,544,1347,1372]" class="Diplopoda" family="Julidae" genus="Anaulaciulus" kingdom="Animalia" order="Julida" pageId="2" pageNumber="576" phylum="Arthropoda" rank="species" species="koreanus">
|
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<emphasis id="5DA27411BC437E2FFE558C192F375070" box="[413,544,1347,1372]" italics="true" pageId="2" pageNumber="576">A. koreanus</emphasis>
|
||
</taxonomicName>
|
||
is the third highest of all diplopod mitochondrial genomes (
|
||
<tableCitation id="22549DB8BC437E2FFB738C1E28055077" box="[1211,1298,1347,1372]" captionStart="TABLE 2" captionStartId="2.[151,239,1487,1510]" captionTargetBox="[160,1349,1569,2005]" captionText="TABLE 2. The whole mitochondrial genome lengths and A + T / G + C contents of ten millipede species examined in the present study" httpUri="http://table.plazi.org/id/3BA9F88BBC437E2FFF5F8C922C33532A" pageId="2" pageNumber="576" tableUuid="3BA9F88BBC437E2FFF5F8C922C33532A">Table 2</tableCitation>
|
||
). In contrast with that of
|
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<taxonomicName id="A8D6D380BC437E2FFEE88C352CB150AC" baseAuthorityName="Verhoeff" baseAuthorityYear="1937" box="[288,422,1383,1408]" class="Diplopoda" family="Julidae" genus="Anaulaciulus" kingdom="Animalia" order="Julida" pageId="2" pageNumber="576" phylum="Arthropoda" rank="species" species="koreanus">
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<emphasis id="5DA27411BC437E2FFEE88C352CB150AC" box="[288,422,1383,1408]" italics="true" pageId="2" pageNumber="576">A. koreanus</emphasis>
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</taxonomicName>
|
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, also belonging to the same order
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<taxonomicName id="A8D6D380BC437E2FFCE38C3A2E6650AC" authorityName="Brandt" authorityYear="1833" box="[811,881,1383,1408]" class="Diplopoda" kingdom="Animalia" order="Julida" pageId="2" pageNumber="576" phylum="Arthropoda" rank="order">Julida</taxonomicName>
|
||
,
|
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<taxonomicName id="A8D6D380BC437E2FFCB48C35291B50AC" authorityName="Verhoeff" authorityYear="1938" box="[892,1036,1383,1408]" class="Diplopoda" family="Nemasomatidae" genus="Antrokoreana" kingdom="Animalia" order="Julida" pageId="2" pageNumber="576" phylum="Arthropoda" rank="species" species="gracilipes">
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<emphasis id="5DA27411BC437E2FFCB48C35291B50AC" box="[892,1036,1383,1408]" italics="true" pageId="2" pageNumber="576">A. gracilipes</emphasis>
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</taxonomicName>
|
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has a relatively lower A+T content (62.1%) (
|
||
<bibRefCitation id="0B47D5F2BC437E2FFEC88CD62CAE508F" author="Woo" box="[256,441,1419,1444]" pageId="2" pageNumber="576" refString="Woo, H. J., Lee, Y. S., Park, S. J., Lim, J. T., Jang, K. H., Choi, E. H., Choi, Y. G. & Hwang, U. W. (2007) Complete mitochondrial genome of a troglobite millipede Antrokoreana gracilipes (Diplopoda, Juliformia, Julida), and juliformian phylogeny. Molecules and Cells, 23 (2), 182 - 191." type="journal article" year="2007">
|
||
Woo
|
||
<emphasis id="5DA27411BC437E2FFEF58CD12C615088" box="[317,374,1419,1444]" italics="true" pageId="2" pageNumber="576">et al.</emphasis>
|
||
2007
|
||
</bibRefCitation>
|
||
).
|
||
</paragraph>
|
||
<caption id="3BA9F88BBC437E2FFF5F8C922C33532A" ID-Table-UUID="3BA9F88BBC437E2FFF5F8C922C33532A" httpUri="http://table.plazi.org/id/3BA9F88BBC437E2FFF5F8C922C33532A" pageId="2" pageNumber="576" targetBox="[160,1349,1569,2005]" targetIsTable="true" targetPageId="2">
|
||
<paragraph id="6F69A803BC437E2FFF5F8C922C33532A" blockId="2.[151,1436,1487,1542]" pageId="2" pageNumber="576">
|
||
<emphasis id="5DA27411BC437E2FFF5F8C922C1C50CA" bold="true" box="[151,267,1487,1510]" pageId="2" pageNumber="576">TABLE 2.</emphasis>
|
||
The whole mitochondrial genome lengths and A+T/G+C contents of ten millipede species examined in the present study
|
||
</paragraph>
|
||
</caption>
|
||
<paragraph id="6F69A803BC437E2FFF688F7C285352F9" pageId="2" pageNumber="576">
|
||
<table id="1DD65AA3BC4381D2FF688F7C285252F9" box="[160,1349,1569,2005]" gridcols="5" gridrows="11" pageId="2" pageNumber="576">
|
||
<tr id="D1E6AA41BC4381D2FF688F7C2852531B" box="[160,1349,1569,1591]" gridrow="0" pageId="2" pageNumber="576">
|
||
<th id="9237C33DBC4381D2FF688F7C2C57531B" box="[160,320,1569,1591]" gridcol="0" gridrow="0" pageId="2" pageNumber="576">Order</th>
|
||
<th id="9237C33DBC4381D2FE148F7C2FC7531B" box="[476,720,1569,1591]" gridcol="1" gridrow="0" pageId="2" pageNumber="576">Species</th>
|
||
<th id="9237C33DBC4381D2FCAB8F7C2EE8531B" box="[867,1023,1569,1591]" gridcol="2" gridrow="0" pageId="2" pageNumber="576">Genome length</th>
|
||
<th id="9237C33DBC4381D2FBBA8F7C29A3531B" box="[1138,1204,1569,1591]" gridcol="3" gridrow="0" pageId="2" pageNumber="576">A+T</th>
|
||
<th id="9237C33DBC4381D2FACB8F7C2852531B" box="[1283,1349,1569,1591]" gridcol="4" gridrow="0" pageId="2" pageNumber="576">G+C</th>
|
||
</tr>
|
||
<tr id="D1E6AA41BC4381D2FF688F162852534D" box="[160,1349,1611,1633]" gridrow="1" pageId="2" pageNumber="576">
|
||
<th id="9237C33DBC4381D2FF688F162C57534D" box="[160,320,1611,1633]" gridcol="0" gridrow="1" pageId="2" pageNumber="576">
|
||
<taxonomicName id="A8D6D380BC437E2FFF688F162C01534D" authorityName="Bollman" authorityYear="1893" box="[160,278,1611,1633]" class="Diplopoda" kingdom="Animalia" order="Callipodida" pageId="2" pageNumber="576" phylum="Arthropoda" rank="order">Callipodida</taxonomicName>
|
||
</th>
|
||
<td id="9237C33DBC4381D2FE148F162FC7534D" box="[476,720,1611,1633]" gridcol="1" gridrow="1" pageId="2" pageNumber="576">
|
||
<taxonomicName id="A8D6D380BC437E2FFE148F162F86534D" baseAuthorityName="Loomis" baseAuthorityYear="1943" box="[476,657,1611,1633]" class="Diplopoda" family="Abacionidae" genus="Abacion" kingdom="Animalia" order="Callipodida" pageId="2" pageNumber="576" phylum="Arthropoda" rank="species" species="magnum">Abacion magnum</taxonomicName>
|
||
</td>
|
||
<td id="9237C33DBC4381D2FCAB8F162EE8534D" box="[867,1023,1611,1633]" gridcol="2" gridrow="1" pageId="2" pageNumber="576">15,160</td>
|
||
<td id="9237C33DBC4381D2FBBA8F1629A3534D" box="[1138,1204,1611,1633]" gridcol="3" gridrow="1" pageId="2" pageNumber="576">66.6%</td>
|
||
<td id="9237C33DBC4381D2FACB8F162852534D" box="[1283,1349,1611,1633]" gridcol="4" gridrow="1" pageId="2" pageNumber="576">33.4%</td>
|
||
</tr>
|
||
<tr id="D1E6AA41BC4381D2FF688F29285253A6" box="[160,1349,1652,1674]" gridrow="2" pageId="2" pageNumber="576">
|
||
<th id="9237C33DBC4381D2FF688F292C5753A6" box="[160,320,1652,1674]" gridcol="0" gridrow="2" pageId="2" pageNumber="576">
|
||
<taxonomicName id="A8D6D380BC437E2FFF688F292DCB53A6" authorityName="Brandt" authorityYear="1833" box="[160,220,1652,1674]" class="Diplopoda" kingdom="Animalia" order="Julida" pageId="2" pageNumber="576" phylum="Arthropoda" rank="order">Julida</taxonomicName>
|
||
</th>
|
||
<td id="9237C33DBC4381D2FE148F292FC753A6" box="[476,720,1652,1674]" gridcol="1" gridrow="2" pageId="2" pageNumber="576">
|
||
<taxonomicName id="A8D6D380BC437E2FFE148F292FD353A6" baseAuthorityName="Verhoeff" baseAuthorityYear="1937" box="[476,708,1652,1674]" class="Diplopoda" family="Julidae" genus="Anaulaciulus" kingdom="Animalia" order="Julida" pageId="2" pageNumber="576" phylum="Arthropoda" rank="species" species="koreanus">Anaulaciulus koreanus</taxonomicName>
|
||
</td>
|
||
<td id="9237C33DBC4381D2FCAB8F292EE853A6" box="[867,1023,1652,1674]" gridcol="2" gridrow="2" pageId="2" pageNumber="576">14,916</td>
|
||
<td id="9237C33DBC4381D2FBBA8F2929A353A6" box="[1138,1204,1652,1674]" gridcol="3" gridrow="2" pageId="2" pageNumber="576">71.1%</td>
|
||
<td id="9237C33DBC4381D2FACB8F29285253A6" box="[1283,1349,1652,1674]" gridcol="4" gridrow="2" pageId="2" pageNumber="576">28.9%</td>
|
||
</tr>
|
||
<tr id="D1E6AA41BC4381D2FF688FC02852539F" box="[160,1349,1693,1715]" gridrow="3" pageId="2" pageNumber="576">
|
||
<th id="9237C33DBC4381D2FF688FC02C57539F" box="[160,320,1693,1715]" gridcol="0" gridrow="3" pageId="2" pageNumber="576">
|
||
<taxonomicName id="A8D6D380BC437E2FFF688FC02DCB539F" authorityName="Brandt" authorityYear="1833" box="[160,220,1693,1715]" class="Diplopoda" kingdom="Animalia" order="Julida" pageId="2" pageNumber="576" phylum="Arthropoda" rank="order">Julida</taxonomicName>
|
||
</th>
|
||
<td id="9237C33DBC4381D2FE148FC02FC7539F" box="[476,720,1693,1715]" gridcol="1" gridrow="3" pageId="2" pageNumber="576">
|
||
<taxonomicName id="A8D6D380BC437E2FFE158FC02FC7539F" authorityName="Verhoeff" authorityYear="1938" box="[477,720,1693,1715]" class="Diplopoda" family="Nemasomatidae" genus="Antrokoreana" kingdom="Animalia" order="Julida" pageId="2" pageNumber="576" phylum="Arthropoda" rank="species" species="gracilipes">Antrokoreana gracilipes</taxonomicName>
|
||
</td>
|
||
<td id="9237C33DBC4381D2FCAB8FC02EE8539F" box="[867,1023,1693,1715]" gridcol="2" gridrow="3" pageId="2" pageNumber="576">14,747</td>
|
||
<td id="9237C33DBC4381D2FBBA8FC029A3539F" box="[1138,1204,1693,1715]" gridcol="3" gridrow="3" pageId="2" pageNumber="576">62.1%</td>
|
||
<td id="9237C33DBC4381D2FACB8FC02852539F" box="[1283,1349,1693,1715]" gridcol="4" gridrow="3" pageId="2" pageNumber="576">37.9%</td>
|
||
</tr>
|
||
<tr id="D1E6AA41BC4381D2FF688F9A285253F1" box="[160,1349,1735,1757]" gridrow="4" pageId="2" pageNumber="576">
|
||
<th id="9237C33DBC4381D2FF688F9A2C5753F1" box="[160,320,1735,1757]" gridcol="0" gridrow="4" pageId="2" pageNumber="576">
|
||
<taxonomicName id="A8D6D380BC437E2FFF688F9A2C3453F1" box="[160,291,1735,1757]" class="Diplopoda" kingdom="Animalia" order="Polydesmida" pageId="2" pageNumber="576" phylum="Arthropoda" rank="order">Polydesmida</taxonomicName>
|
||
</th>
|
||
<td id="9237C33DBC4381D2FE148F9A2FC753F1" box="[476,720,1735,1757]" gridcol="1" gridrow="4" pageId="2" pageNumber="576">
|
||
<taxonomicName id="A8D6D380BC437E2FFE148F9A2FD153F1" baseAuthorityName="Keeton" baseAuthorityYear="1959" box="[476,710,1735,1757]" class="Diplopoda" family="Xystodesmidae" genus="Appalachioria" higherTaxonomySource="GBIF" kingdom="Animalia" order="Polydesmida" pageId="2" pageNumber="576" phylum="Arthropoda" rank="species" species="falcifera">Appalachioria falcifera</taxonomicName>
|
||
</td>
|
||
<td id="9237C33DBC4381D2FCAB8F9A2EE853F1" box="[867,1023,1735,1757]" gridcol="2" gridrow="4" pageId="2" pageNumber="576">15,282</td>
|
||
<td id="9237C33DBC4381D2FBBA8F9A29A353F1" box="[1138,1204,1735,1757]" gridcol="3" gridrow="4" pageId="2" pageNumber="576">64.0%</td>
|
||
<td id="9237C33DBC4381D2FACB8F9A285253F1" box="[1283,1349,1735,1757]" gridcol="4" gridrow="4" pageId="2" pageNumber="576">36.0%</td>
|
||
</tr>
|
||
<tr id="D1E6AA41BC4381D2FF688FAD2852522A" box="[160,1349,1776,1798]" gridrow="5" pageId="2" pageNumber="576" rowspan-0="1">
|
||
<td id="9237C33DBC4381D2FE148FAD2FC7522A" box="[476,720,1776,1798]" gridcol="1" gridrow="5" pageId="2" pageNumber="576">
|
||
<taxonomicName id="A8D6D380BC437E2FFE148FAD2F48522A" authorityName="Cook" authorityYear="1895" box="[476,607,1776,1798]" class="Diplopoda" family="Xystodesmidae" genus="Xystodesmus" kingdom="Animalia" order="Polydesmida" pageId="2" pageNumber="576" phylum="Arthropoda" rank="genus">
|
||
<emphasis id="5DA27411BC437E2FFE148FAD2F48522A" box="[476,607,1776,1798]" italics="true" pageId="2" pageNumber="576">Xystodesmus</emphasis>
|
||
</taxonomicName>
|
||
sp.
|
||
</td>
|
||
<td id="9237C33DBC4381D2FCAB8FAD2EE8522A" box="[867,1023,1776,1798]" gridcol="2" gridrow="5" pageId="2" pageNumber="576">15,791</td>
|
||
<td id="9237C33DBC4381D2FBBA8FAD29A3522A" box="[1138,1204,1776,1798]" gridcol="3" gridrow="5" pageId="2" pageNumber="576">67%</td>
|
||
<td id="9237C33DBC4381D2FACB8FAD2852522A" box="[1283,1349,1776,1798]" gridcol="4" gridrow="5" pageId="2" pageNumber="576">33%</td>
|
||
</tr>
|
||
<tr id="D1E6AA41BC4381D2FF688E4428525203" box="[160,1349,1817,1839]" gridrow="6" pageId="2" pageNumber="576" rowspan-0="1">
|
||
<td id="9237C33DBC4381D2FE148E442FC75203" box="[476,720,1817,1839]" gridcol="1" gridrow="6" pageId="2" pageNumber="576">
|
||
<taxonomicName id="A8D6D380BC437E2FFE148E442FAC5203" baseAuthorityName="De Saussure" baseAuthorityYear="1860" box="[476,699,1817,1839]" class="Diplopoda" family="Paradoxosomatidae" genus="Asiomorpha" higherTaxonomySource="CoL" kingdom="Animalia" order="Polydesmida" pageId="2" pageNumber="576" phylum="Arthropoda" rank="species" species="coarctata">Asiomorpha coarctata</taxonomicName>
|
||
</td>
|
||
<td id="9237C33DBC4381D2FCAB8E442EE85203" box="[867,1023,1817,1839]" gridcol="2" gridrow="6" pageId="2" pageNumber="576">15,644</td>
|
||
<td id="9237C33DBC4381D2FBBA8E4429A35203" box="[1138,1204,1817,1839]" gridcol="3" gridrow="6" pageId="2" pageNumber="576">67.4%</td>
|
||
<td id="9237C33DBC4381D2FACB8E4428525203" box="[1283,1349,1817,1839]" gridcol="4" gridrow="6" pageId="2" pageNumber="576">32.6%</td>
|
||
</tr>
|
||
<tr id="D1E6AA41BC4381D2FF688E1E28525275" box="[160,1349,1859,1881]" gridrow="7" pageId="2" pageNumber="576">
|
||
<th id="9237C33DBC4381D2FF688E1E2C575275" box="[160,320,1859,1881]" gridcol="0" gridrow="7" pageId="2" pageNumber="576">
|
||
<taxonomicName id="A8D6D380BC437E2FFF688E1E2C3F5275" box="[160,296,1859,1881]" class="Diplopoda" kingdom="Animalia" order="Platydesmida" pageId="2" pageNumber="576" phylum="Arthropoda" rank="order">Platydesmida</taxonomicName>
|
||
</th>
|
||
<td id="9237C33DBC4381D2FE148E1E2FC75275" box="[476,720,1859,1881]" gridcol="1" gridrow="7" pageId="2" pageNumber="576">
|
||
<taxonomicName id="A8D6D380BC437E2FFE148E1E2FB05275" authorityName="Wood" authorityYear="1864" box="[476,679,1859,1881]" class="Diplopoda" family="Andrognathidae" genus="Brachycybe" kingdom="Animalia" order="Platydesmida" pageId="2" pageNumber="576" phylum="Arthropoda" rank="species" species="lecontii">Brachycybe lecontii</taxonomicName>
|
||
</td>
|
||
<td id="9237C33DBC4381D2FCAB8E1E2EE85275" box="[867,1023,1859,1881]" gridcol="2" gridrow="7" pageId="2" pageNumber="576">15,115</td>
|
||
<td id="9237C33DBC4381D2FBBA8E1E29A35275" box="[1138,1204,1859,1881]" gridcol="3" gridrow="7" pageId="2" pageNumber="576">76.6%</td>
|
||
<td id="9237C33DBC4381D2FACB8E1E28525275" box="[1283,1349,1859,1881]" gridcol="4" gridrow="7" pageId="2" pageNumber="576">23.4%</td>
|
||
</tr>
|
||
<tr id="D1E6AA41BC4381D2FF688E31285252AE" box="[160,1349,1900,1922]" gridrow="8" pageId="2" pageNumber="576">
|
||
<th id="9237C33DBC4381D2FF688E312C5752AE" box="[160,320,1900,1922]" gridcol="0" gridrow="8" pageId="2" pageNumber="576">
|
||
<taxonomicName id="A8D6D380BC437E2FFF688E312C0152AE" box="[160,278,1900,1922]" class="Diplopoda" kingdom="Animalia" order="Spirobolida" pageId="2" pageNumber="576" phylum="Arthropoda" rank="order">Spirobolida</taxonomicName>
|
||
</th>
|
||
<td id="9237C33DBC4381D2FE148E312FC752AE" box="[476,720,1900,1922]" gridcol="1" gridrow="8" pageId="2" pageNumber="576">
|
||
<taxonomicName id="A8D6D380BC437E2FFE158E302F8452AE" baseAuthorityName="Rafinesque" baseAuthorityYear="1820" box="[477,659,1900,1922]" class="Diplopoda" family="Spirobolidae" genus="Narceus" kingdom="Animalia" order="Spirobolida" pageId="2" pageNumber="576" phylum="Arthropoda" rank="species" species="annularis">Narceus annularis</taxonomicName>
|
||
</td>
|
||
<td id="9237C33DBC4381D2FCAB8E312EE852AE" box="[867,1023,1900,1922]" gridcol="2" gridrow="8" pageId="2" pageNumber="576">14,868</td>
|
||
<td id="9237C33DBC4381D2FBBA8E3129A352AE" box="[1138,1204,1900,1922]" gridcol="3" gridrow="8" pageId="2" pageNumber="576">63.7%</td>
|
||
<td id="9237C33DBC4381D2FACB8E31285252AE" box="[1283,1349,1900,1922]" gridcol="4" gridrow="8" pageId="2" pageNumber="576">36.3%</td>
|
||
</tr>
|
||
<tr id="D1E6AA41BC4381D2FF688EC828525287" box="[160,1349,1941,1963]" gridrow="9" pageId="2" pageNumber="576">
|
||
<th id="9237C33DBC4381D2FF688EC82C575287" box="[160,320,1941,1963]" gridcol="0" gridrow="9" pageId="2" pageNumber="576">
|
||
<taxonomicName id="A8D6D380BC437E2FFF688EC82C575287" authorityName="Brandt" authorityYear="1833" box="[160,320,1941,1963]" class="Diplopoda" kingdom="Animalia" order="Sphaerotheriida" pageId="2" pageNumber="576" phylum="Arthropoda" rank="order">Sphaerotheriida</taxonomicName>
|
||
</th>
|
||
<td id="9237C33DBC4381D2FE148EC82FC75287" box="[476,720,1941,1963]" gridcol="1" gridrow="9" pageId="2" pageNumber="576">
|
||
<taxonomicName id="A8D6D380BC437E2FFE148EC82F905287" authorityName="Brandt" authorityYear="1833" box="[476,647,1941,1963]" class="Diplopoda" family="Sphaerotheriidae" kingdom="Animalia" order="Sphaerotheriida" pageId="2" pageNumber="576" phylum="Arthropoda" rank="family">Sphaerotheriidae</taxonomicName>
|
||
sp.
|
||
</td>
|
||
<td id="9237C33DBC4381D2FCAB8EC82EE85287" box="[867,1023,1941,1963]" gridcol="2" gridrow="9" pageId="2" pageNumber="576">14,970</td>
|
||
<td id="9237C33DBC4381D2FBBA8EC829A35287" box="[1138,1204,1941,1963]" gridcol="3" gridrow="9" pageId="2" pageNumber="576">71.2%</td>
|
||
<td id="9237C33DBC4381D2FACB8EC828525287" box="[1283,1349,1941,1963]" gridcol="4" gridrow="9" pageId="2" pageNumber="576">28.8%</td>
|
||
</tr>
|
||
<tr id="D1E6AA41BC4381D2FF688EE2285252F9" box="[160,1349,1983,2005]" gridrow="10" pageId="2" pageNumber="576">
|
||
<th id="9237C33DBC4381D2FF688EE22C5752F9" box="[160,320,1983,2005]" gridcol="0" gridrow="10" pageId="2" pageNumber="576">
|
||
<taxonomicName id="A8D6D380BC437E2FFF688EE22C3952F9" box="[160,302,1983,2005]" class="Diplopoda" kingdom="Animalia" order="Spirostreptida" pageId="2" pageNumber="576" phylum="Arthropoda" rank="order">Spirostreptida</taxonomicName>
|
||
</th>
|
||
<td id="9237C33DBC4381D2FE148EE22FC752F9" box="[476,720,1983,2005]" gridcol="1" gridrow="10" pageId="2" pageNumber="576">
|
||
<taxonomicName id="A8D6D380BC437E2FFE148EE22F4452F9" authorityName="Pocock" authorityYear="1894" box="[476,595,1983,2005]" class="Diplopoda" family="Harpagophoridae" genus="Thyropygus" kingdom="Animalia" order="Spirostreptida" pageId="2" pageNumber="576" phylum="Arthropoda" rank="genus">
|
||
<emphasis id="5DA27411BC437E2FFE148EE22F4452F9" box="[476,595,1983,2005]" italics="true" pageId="2" pageNumber="576">Thyropygus</emphasis>
|
||
</taxonomicName>
|
||
sp.
|
||
</td>
|
||
<td id="9237C33DBC4381D2FCAB8EE22EE852F9" box="[867,1023,1983,2005]" gridcol="2" gridrow="10" pageId="2" pageNumber="576">15,133</td>
|
||
<td id="9237C33DBC4381D2FBBA8EE229A352F9" box="[1138,1204,1983,2005]" gridcol="3" gridrow="10" pageId="2" pageNumber="576">67.8%</td>
|
||
<td id="9237C33DBC4381D2FACB8EE2285252F9" box="[1283,1349,1983,2005]" gridcol="4" gridrow="10" pageId="2" pageNumber="576">32.2%</td>
|
||
</tr>
|
||
</table>
|
||
</paragraph>
|
||
<caption id="3BA9F88BBC427E2EFF5F8CAE29B65304" httpUri="https://zenodo.org/record/1008868/files/figure.png" pageId="3" pageNumber="577" targetBox="[212,1376,255,1444]" targetPageId="3">
|
||
<paragraph id="6F69A803BC427E2EFF5F8CAE29B65304" blockId="3.[151,1436,1523,1576]" pageId="3" pageNumber="577">
|
||
<emphasis id="5DA27411BC427E2EFF5F8CAE29CF5325" bold="true" box="[151,1240,1523,1546]" pageId="3" pageNumber="577">
|
||
FIGURE 1. The mitochondrial genome structures of
|
||
<taxonomicName id="A8D6D380BC427E2EFCC78CAE29C45325" authority="(Verhoeff, 1937)" authorityName="Verhoeff" authorityYear="1937" baseAuthorityName="Verhoeff" baseAuthorityYear="1937" box="[783,1235,1523,1546]" class="Diplopoda" family="Julidae" genus="Anaulaciulus" kingdom="Animalia" order="Julida" pageId="3" pageNumber="577" phylum="Arthropoda" rank="species" species="koreanus">
|
||
<emphasis id="5DA27411BC427E2EFCC78CAE291B5326" bold="true" box="[783,1036,1523,1546]" italics="true" pageId="3" pageNumber="577">Anaulaciulus koreanus</emphasis>
|
||
(Verhoeff, 1937)
|
||
</taxonomicName>
|
||
.
|
||
</emphasis>
|
||
The direction of transcription for each gene is shown by an arrow. The hatch-marked area is a large non-coding region.
|
||
</paragraph>
|
||
</caption>
|
||
<paragraph id="6F69A803BC427E2EFF0F8F0B2F3A52F4" blockId="3.[151,1437,1620,2008]" pageId="3" pageNumber="577">
|
||
In the
|
||
<taxonomicName id="A8D6D380BC427E2EFEDE8F082C895341" baseAuthorityName="Verhoeff" baseAuthorityYear="1937" box="[278,414,1620,1645]" class="Diplopoda" family="Julidae" genus="Anaulaciulus" kingdom="Animalia" order="Julida" pageId="3" pageNumber="577" phylum="Arthropoda" rank="species" species="koreanus">
|
||
<emphasis id="5DA27411BC427E2EFEDE8F082C895341" box="[278,414,1620,1645]" italics="true" pageId="3" pageNumber="577">A. koreanus</emphasis>
|
||
</taxonomicName>
|
||
mitochondrial genome, G+C rich codons are rarely used for protein-coding genes, and nucleotides of the third codon position in protein coding genes are predominantly A or T due to generally high A+T content. The metazoan mitochondrial protein-coding genes are located principally between single or multiple tRNAs, but some protein-coding genes neighbor other protein-coding genes. There are five pairs of protein-coding genes without any intervening tRNA genes in the mitochondrial genome of
|
||
<taxonomicName id="A8D6D380BC427E2EFC3E8FB8296B53D2" baseAuthorityName="Verhoeff" baseAuthorityYear="1937" box="[1014,1148,1765,1790]" class="Diplopoda" family="Julidae" genus="Anaulaciulus" kingdom="Animalia" order="Julida" pageId="3" pageNumber="577" phylum="Arthropoda" rank="species" species="koreanus">
|
||
<emphasis id="5DA27411BC427E2EFC3E8FB8296B53D2" box="[1014,1148,1765,1790]" italics="true" pageId="3" pageNumber="577">A. koreanus</emphasis>
|
||
</taxonomicName>
|
||
:
|
||
<emphasis id="5DA27411BC427E2EFB448FBB29E853D1" box="[1164,1279,1766,1789]" italics="true" pageId="3" pageNumber="577">COI-COII</emphasis>
|
||
,
|
||
<emphasis id="5DA27411BC427E2EFAC68FB8288253D2" box="[1294,1429,1765,1790]" italics="true" pageId="3" pageNumber="577">ATP8-ATP6</emphasis>
|
||
,
|
||
<emphasis id="5DA27411BC427E2EFF5F8E552C35520D" box="[151,290,1800,1825]" italics="true" pageId="3" pageNumber="577">ATP6-COIII</emphasis>
|
||
,
|
||
<emphasis id="5DA27411BC427E2EFEFC8E552CB0520D" box="[308,423,1800,1825]" italics="true" pageId="3" pageNumber="577">ND6-Cytb</emphasis>
|
||
and
|
||
<emphasis id="5DA27411BC427E2EFE2F8E542F7E520D" box="[487,617,1801,1825]" italics="true" pageId="3" pageNumber="577">ND4L-ND4</emphasis>
|
||
(
|
||
<tableCitation id="22549DB8BC427E2EFDB48E552FC0520D" box="[636,727,1800,1825]" captionStart="TABLE 3" captionStartId="4.[151,239,152,175]" captionText="TABLE 3. Annotation and gene organization of the complete mitochondrial genome of Anaulaciulus koreanus" pageId="3" pageNumber="577">Table 3</tableCitation>
|
||
). At these five gene junctions, there are sequences with the potential for forming stem-and-loop structures with a variable stem and loop (
|
||
<figureCitation id="F7EDB486BC427E2EFBD78E70297F5269" box="[1055,1128,1837,1862]" captionStart="FIGURE 2" captionStartId="5.[151,250,924,946]" captionTargetBox="[355,1240,386,891]" captionTargetId="figure@5.[340,1248,373,903]" captionTargetPageId="5" captionText="FIGURE 2. Potential stem and loop structures of the junctional sequences of (A) COI-COII, (B) ATP 8 - ATP 6, (C) ND 6 - Cytb, (D) ND 4 L-ND 4, and (E) ATP 6 - COIII, and (F) a non-coding region in the mitochondrial genome of Anaulaciulus koreanus (Verhoeff, 1937). The anticodon sequences are boxed, and termination codons or incomplete termination codons are drawn with an underline or side-line. The number of nucleotide sequences in each loop is shown." httpUri="https://zenodo.org/record/1008870/files/figure.png" pageId="3" pageNumber="577">Fig. 2</figureCitation>
|
||
). Of 22 tRNAs, 19 have a typical four-leaf clover shape, but three of
|
||
<emphasis id="5DA27411BC427E2EFDB08E092FE55272" box="[632,754,1872,1899]" italics="true" pageId="3" pageNumber="577">tRNA Ser(AGN)</emphasis>
|
||
,
|
||
<emphasis id="5DA27411BC427E2EFCC98E092E425272" box="[769,853,1872,1899]" italics="true" pageId="3" pageNumber="577">tRNA Gln</emphasis>
|
||
and
|
||
<emphasis id="5DA27411BC427E2EFC448E092ECE5272" box="[908,985,1872,1899]" italics="true" pageId="3" pageNumber="577">tRNA Ile</emphasis>
|
||
have unusual and unstable structures of the DHU arms (
|
||
<figureCitation id="F7EDB486BC427E2EFE9F8E2A2CB652BC" box="[343,417,1911,1936]" captionStart="FIGURE 2" captionStartId="5.[151,250,924,946]" captionTargetBox="[355,1240,386,891]" captionTargetId="figure@5.[340,1248,373,903]" captionTargetPageId="5" captionText="FIGURE 2. Potential stem and loop structures of the junctional sequences of (A) COI-COII, (B) ATP 8 - ATP 6, (C) ND 6 - Cytb, (D) ND 4 L-ND 4, and (E) ATP 6 - COIII, and (F) a non-coding region in the mitochondrial genome of Anaulaciulus koreanus (Verhoeff, 1937). The anticodon sequences are boxed, and termination codons or incomplete termination codons are drawn with an underline or side-line. The number of nucleotide sequences in each loop is shown." httpUri="https://zenodo.org/record/1008870/files/figure.png" pageId="3" pageNumber="577">Fig. 2</figureCitation>
|
||
). The stem and loop structure has been shown to operate as the regulatory signal that facilitates the precise cleavage of the mature protein-coding gene transcript from the primary multicistronic transcripts (
|
||
<bibRefCitation id="0B47D5F2BC427E2EFED28EE22CCE52F4" author="Ojala" box="[282,473,1983,2008]" pageId="3" pageNumber="577" refString="Ojala, D., Merkel, C., Geltand, R. & Attardi, G. (1980) The tRNA genes punctuate the reading of genetic information in human mitochondrial DNA. Cell, 22, 393 - 403. https: // doi. org / 10.1016 / 0092 - 8674 (80) 90350 - 5" type="journal article" year="1980">
|
||
Ojala
|
||
<emphasis id="5DA27411BC427E2EFE978E9C2C8F52F4" box="[351,408,1983,2008]" italics="true" pageId="3" pageNumber="577">et al.</emphasis>
|
||
1980
|
||
</bibRefCitation>
|
||
,
|
||
<bibRefCitation id="0B47D5F2BC427E2EFE2D8E9D2F3652F4" author="Ojala" box="[485,545,1984,2008]" pageId="3" pageNumber="577" refString="Ojala, D., Montoya, J. & Attardi, G. (1981) tRNA punctuation model of RNA processing in human mitochondria. Nature, 290, 470 - 474. https: // doi. org / 10.1038 / 290470 a 0" type="journal article" year="1981">1981</bibRefCitation>
|
||
).
|
||
</paragraph>
|
||
<caption id="3BA9F88BBC457E29FF5F89C528225583" box="[151,1333,151,175]" pageId="4" pageNumber="578">
|
||
<paragraph id="6F69A803BC457E29FF5F89C528225583" blockId="4.[151,1333,151,175]" box="[151,1333,151,175]" pageId="4" pageNumber="578">
|
||
<emphasis id="5DA27411BC457E29FF5F89C52C1E5583" bold="true" box="[151,265,152,175]" pageId="4" pageNumber="578">TABLE 3.</emphasis>
|
||
Annotation and gene organization of the complete mitochondrial genome of
|
||
<taxonomicName id="A8D6D380BC457E29FB8989CA28225583" baseAuthorityName="Verhoeff" baseAuthorityYear="1937" box="[1089,1333,151,175]" class="Diplopoda" family="Julidae" genus="Anaulaciulus" kingdom="Animalia" order="Julida" pageId="4" pageNumber="578" phylum="Arthropoda" rank="species" species="koreanus">Anaulaciulus koreanus</taxonomicName>
|
||
</paragraph>
|
||
</caption>
|
||
<paragraph id="6F69A803BC457E29FF56899629E15248" pageId="4" pageNumber="578">
|
||
<table id="1DD65AA3BC4581D2FF56899728405248" box="[158,1367,202,1892]" gridcols="8" gridrows="20" pageId="4" pageNumber="578">
|
||
<tr id="D1E6AA41BC4581D2FF56899728405419" box="[158,1367,202,309]" gridrow="0" pageId="4" pageNumber="578">
|
||
<th id="9237C33DBC4581D2FF5689972C495419" box="[158,350,202,309]" gridcol="0" gridrow="0" pageId="4" pageNumber="578">Feature tRNA Ile</th>
|
||
<th id="9237C33DBC4581D2FE6889972CE45419" box="[416,499,202,309]" gridcol="1" gridrow="0" pageId="4" pageNumber="578">Position From 1</th>
|
||
<th id="9237C33DBC4581D2FE3289972F735419" box="[506,612,202,309]" gridcol="2" gridrow="0" pageId="4" pageNumber="578">number To 7 4</th>
|
||
<th id="9237C33DBC4581D2FD6289972FFB5419" box="[682,748,202,309]" gridcol="3" gridrow="0" pageId="4" pageNumber="578">Strand +</th>
|
||
<th id="9237C33DBC4581D2FCFB89972E7A5419" box="[819,877,202,309]" gridcol="4" gridrow="0" pageId="4" pageNumber="578">Size (bp) 7 4</th>
|
||
<th id="9237C33DBC4581D2FC7C8997291A5419" box="[948,1037,202,309]" gridcol="5" gridrow="0" pageId="4" pageNumber="578">Codon Start</th>
|
||
<th id="9237C33DBC4581D2FB98899729955419" box="[1104,1154,202,309]" gridcol="6" gridrow="0" pageId="4" pageNumber="578">Stop</th>
|
||
<th id="9237C33DBC4581D2FB2B899728405419" box="[1251,1367,202,309]" gridcol="7" gridrow="0" pageId="4" pageNumber="578">Intergenic nucleotides 0</th>
|
||
</tr>
|
||
<tr id="D1E6AA41BC4581D2FF5688142840544D" box="[158,1367,329,353]" gridrow="1" pageId="4" pageNumber="578" rowspan-5="1" rowspan-6="1">
|
||
<th id="9237C33DBC4581D2FF5688142C49544D" box="[158,350,329,353]" gridcol="0" gridrow="1" pageId="4" pageNumber="578">tRNA Met</th>
|
||
<td id="9237C33DBC4581D2FE6888142CE4544D" box="[416,499,329,353]" gridcol="1" gridrow="1" pageId="4" pageNumber="578">95</td>
|
||
<td id="9237C33DBC4581D2FE3288142F73544D" box="[506,612,329,353]" gridcol="2" gridrow="1" pageId="4" pageNumber="578">156</td>
|
||
<td id="9237C33DBC4581D2FD6288142FFB544D" box="[682,748,329,353]" gridcol="3" gridrow="1" pageId="4" pageNumber="578">+</td>
|
||
<td id="9237C33DBC4581D2FCFB88142E7A544D" box="[819,877,329,353]" gridcol="4" gridrow="1" pageId="4" pageNumber="578">62</td>
|
||
<td id="9237C33DBC4581D2FB2B88142840544D" box="[1251,1367,329,353]" gridcol="7" gridrow="1" pageId="4" pageNumber="578">20</td>
|
||
</tr>
|
||
<tr id="D1E6AA41BC4581D2FF5688282840549A" box="[158,1367,373,438]" gridrow="2" pageId="4" pageNumber="578">
|
||
<th id="9237C33DBC4581D2FF5688282C49549A" box="[158,350,373,438]" gridcol="0" gridrow="2" pageId="4" pageNumber="578">ND2 tRNA Trp</th>
|
||
<td id="9237C33DBC4581D2FE6888282CE4549A" box="[416,499,373,438]" gridcol="1" gridrow="2" pageId="4" pageNumber="578">157 1166</td>
|
||
<td id="9237C33DBC4581D2FE3288282F73549A" box="[506,612,373,438]" gridcol="2" gridrow="2" pageId="4" pageNumber="578">1167 1229</td>
|
||
<td id="9237C33DBC4581D2FD6288282FFB549A" box="[682,748,373,438]" gridcol="3" gridrow="2" pageId="4" pageNumber="578">+ +</td>
|
||
<td id="9237C33DBC4581D2FCFB88282E7A549A" box="[819,877,373,438]" gridcol="4" gridrow="2" pageId="4" pageNumber="578">1,011 64</td>
|
||
<td id="9237C33DBC4581D2FC7C8828291A549A" box="[948,1037,373,438]" gridcol="5" gridrow="2" pageId="4" pageNumber="578">ATA(M)</td>
|
||
<td id="9237C33DBC4581D2FB9888282995549A" box="[1104,1154,373,438]" gridcol="6" gridrow="2" pageId="4" pageNumber="578">TAA</td>
|
||
<td id="9237C33DBC4581D2FB2B88282840549A" box="[1251,1367,373,438]" gridcol="7" gridrow="2" pageId="4" pageNumber="578">0 -2</td>
|
||
</tr>
|
||
<tr id="D1E6AA41BC4581D2FF568897284054CE" box="[158,1367,458,482]" gridrow="3" pageId="4" pageNumber="578" rowspan-5="1" rowspan-6="1">
|
||
<th id="9237C33DBC4581D2FF5688972C4954CE" box="[158,350,458,482]" gridcol="0" gridrow="3" pageId="4" pageNumber="578">tRNA Cys</th>
|
||
<td id="9237C33DBC4581D2FE6888972CE454CE" box="[416,499,458,482]" gridcol="1" gridrow="3" pageId="4" pageNumber="578">1229</td>
|
||
<td id="9237C33DBC4581D2FE3288972F7354CE" box="[506,612,458,482]" gridcol="2" gridrow="3" pageId="4" pageNumber="578">1290</td>
|
||
<td id="9237C33DBC4581D2FD6288972FFB54CE" box="[682,748,458,482]" gridcol="3" gridrow="3" pageId="4" pageNumber="578">-</td>
|
||
<td id="9237C33DBC4581D2FCFB88972E7A54CE" box="[819,877,458,482]" gridcol="4" gridrow="3" pageId="4" pageNumber="578">62</td>
|
||
<td id="9237C33DBC4581D2FB2B8897284054CE" box="[1251,1367,458,482]" gridcol="7" gridrow="3" pageId="4" pageNumber="578">-1</td>
|
||
</tr>
|
||
<tr id="D1E6AA41BC4581D2FF5688AB284057A0" box="[158,1367,502,652]" gridrow="4" pageId="4" pageNumber="578">
|
||
<th id="9237C33DBC4581D2FF5688AB2C4957A0" box="[158,350,502,652]" gridcol="0" gridrow="4" pageId="4" pageNumber="578">COI COII tRNA Lys tRNA Asp</th>
|
||
<td id="9237C33DBC4581D2FE6888AB2CE457A0" box="[416,499,502,652]" gridcol="1" gridrow="4" pageId="4" pageNumber="578">1293 2827 3508 3572</td>
|
||
<td id="9237C33DBC4581D2FE3288AB2F7357A0" box="[506,612,502,652]" gridcol="2" gridrow="4" pageId="4" pageNumber="578">2825 3507 3572 3632</td>
|
||
<td id="9237C33DBC4581D2FD6288AB2FFB57A0" box="[682,748,502,652]" gridcol="3" gridrow="4" pageId="4" pageNumber="578">+ + + +</td>
|
||
<td id="9237C33DBC4581D2FCFB88AB2E7A57A0" box="[819,877,502,652]" gridcol="4" gridrow="4" pageId="4" pageNumber="578">1,533 681 65 61</td>
|
||
<td id="9237C33DBC4581D2FC7C88AB291A57A0" box="[948,1037,502,652]" gridcol="5" gridrow="4" pageId="4" pageNumber="578">ATG(M) ATG(M)</td>
|
||
<td id="9237C33DBC4581D2FB9888AB299557A0" box="[1104,1154,502,652]" gridcol="6" gridrow="4" pageId="4" pageNumber="578">TAA TAA</td>
|
||
<td id="9237C33DBC4581D2FB2B88AB284057A0" box="[1251,1367,502,652]" gridcol="7" gridrow="4" pageId="4" pageNumber="578">-7 1 0 -1</td>
|
||
</tr>
|
||
<tr id="D1E6AA41BC4581D2FF568BFD2840579A" box="[158,1367,672,694]" gridrow="5" pageId="4" pageNumber="578">
|
||
<th id="9237C33DBC4581D2FF568BFD2C49579A" box="[158,350,672,694]" gridcol="0" gridrow="5" pageId="4" pageNumber="578">ATP8</th>
|
||
<td id="9237C33DBC4581D2FE688BFD2CE4579A" box="[416,499,672,694]" gridcol="1" gridrow="5" pageId="4" pageNumber="578">3633</td>
|
||
<td id="9237C33DBC4581D2FE328BFD2F73579A" box="[506,612,672,694]" gridcol="2" gridrow="5" pageId="4" pageNumber="578">3788</td>
|
||
<td id="9237C33DBC4581D2FD628BFD2FFB579A" box="[682,748,672,694]" gridcol="3" gridrow="5" pageId="4" pageNumber="578">+</td>
|
||
<td id="9237C33DBC4581D2FCFB8BFD2E7A579A" box="[819,877,672,694]" gridcol="4" gridrow="5" pageId="4" pageNumber="578">156</td>
|
||
<td id="9237C33DBC4581D2FC7C8BFD291A579A" box="[948,1037,672,694]" gridcol="5" gridrow="5" pageId="4" pageNumber="578">TTA(L)</td>
|
||
<td id="9237C33DBC4581D2FB988BFD2995579A" box="[1104,1154,672,694]" gridcol="6" gridrow="5" pageId="4" pageNumber="578">TAA</td>
|
||
<td id="9237C33DBC4581D2FB2B8BFD2840579A" box="[1251,1367,672,694]" gridcol="7" gridrow="5" pageId="4" pageNumber="578">0</td>
|
||
</tr>
|
||
<tr id="D1E6AA41BC4581D2FF568B9728405618" box="[158,1367,714,820]" gridrow="6" pageId="4" pageNumber="578">
|
||
<th id="9237C33DBC4581D2FF568B972C495618" box="[158,350,714,820]" gridcol="0" gridrow="6" pageId="4" pageNumber="578">ATP6 COIII tRNA Gly</th>
|
||
<td id="9237C33DBC4581D2FE688B972CE45618" box="[416,499,714,820]" gridcol="1" gridrow="6" pageId="4" pageNumber="578">3782 4458 5243</td>
|
||
<td id="9237C33DBC4581D2FE328B972F735618" box="[506,612,714,820]" gridcol="2" gridrow="6" pageId="4" pageNumber="578">4457 5243 5304</td>
|
||
<td id="9237C33DBC4581D2FD628B972FFB5618" box="[682,748,714,820]" gridcol="3" gridrow="6" pageId="4" pageNumber="578">+ + +</td>
|
||
<td id="9237C33DBC4581D2FCFB8B972E7A5618" box="[819,877,714,820]" gridcol="4" gridrow="6" pageId="4" pageNumber="578">676 786 62</td>
|
||
<td id="9237C33DBC4581D2FC7C8B97291A5618" box="[948,1037,714,820]" gridcol="5" gridrow="6" pageId="4" pageNumber="578">ATG(M) ATG(M)</td>
|
||
<td id="9237C33DBC4581D2FB988B9729955618" box="[1104,1154,714,820]" gridcol="6" gridrow="6" pageId="4" pageNumber="578">T-- TAA</td>
|
||
<td id="9237C33DBC4581D2FB2B8B9728405618" box="[1251,1367,714,820]" gridcol="7" gridrow="6" pageId="4" pageNumber="578">-7 0 -1</td>
|
||
</tr>
|
||
<tr id="D1E6AA41BC4581D2FF568A1528405699" box="[158,1367,840,949]" gridrow="7" pageId="4" pageNumber="578">
|
||
<th id="9237C33DBC4581D2FF568A152C495699" box="[158,350,840,949]" gridcol="0" gridrow="7" pageId="4" pageNumber="578">
|
||
ND3 tRNA
|
||
<taxonomicName id="A8D6D380BC457E29FF128A2C2DF95651" box="[218,238,881,893]" class="Malacostraca" family="Majidae" genus="Ala" kingdom="Animalia" order="Decapoda" pageId="4" pageNumber="576" phylum="Arthropoda" rank="genus">Ala</taxonomicName>
|
||
tRNA Arg
|
||
</th>
|
||
<td id="9237C33DBC4581D2FE688A152CE45699" box="[416,499,840,949]" gridcol="1" gridrow="7" pageId="4" pageNumber="578">5302 5648 5712</td>
|
||
<td id="9237C33DBC4581D2FE328A152F735699" box="[506,612,840,949]" gridcol="2" gridrow="7" pageId="4" pageNumber="578">5649 5710 5770</td>
|
||
<td id="9237C33DBC4581D2FD628A152FFB5699" box="[682,748,840,949]" gridcol="3" gridrow="7" pageId="4" pageNumber="578">+ + +</td>
|
||
<td id="9237C33DBC4581D2FCFB8A152E7A5699" box="[819,877,840,949]" gridcol="4" gridrow="7" pageId="4" pageNumber="578">348 63 59</td>
|
||
<td id="9237C33DBC4581D2FC7C8A15291A5699" box="[948,1037,840,949]" gridcol="5" gridrow="7" pageId="4" pageNumber="578">ATA(M)</td>
|
||
<td id="9237C33DBC4581D2FB988A1529955699" box="[1104,1154,840,949]" gridcol="6" gridrow="7" pageId="4" pageNumber="578">TAG</td>
|
||
<td id="9237C33DBC4581D2FB2B8A1528405699" box="[1251,1367,840,949]" gridcol="7" gridrow="7" pageId="4" pageNumber="578">-3 -2 1</td>
|
||
</tr>
|
||
<tr id="D1E6AA41BC4581D2FF568A94284056CD" box="[158,1367,969,993]" gridrow="8" pageId="4" pageNumber="578" rowspan-5="1" rowspan-6="1">
|
||
<th id="9237C33DBC4581D2FF568A942C4956CD" box="[158,350,969,993]" gridcol="0" gridrow="8" pageId="4" pageNumber="578">tRNA Asn</th>
|
||
<td id="9237C33DBC4581D2FE688A942CE456CD" box="[416,499,969,993]" gridcol="1" gridrow="8" pageId="4" pageNumber="578">5768</td>
|
||
<td id="9237C33DBC4581D2FE328A942F7356CD" box="[506,612,969,993]" gridcol="2" gridrow="8" pageId="4" pageNumber="578">5831</td>
|
||
<td id="9237C33DBC4581D2FD628A942FFB56CD" box="[682,748,969,993]" gridcol="3" gridrow="8" pageId="4" pageNumber="578">+</td>
|
||
<td id="9237C33DBC4581D2FCFB8A942E7A56CD" box="[819,877,969,993]" gridcol="4" gridrow="8" pageId="4" pageNumber="578">64</td>
|
||
<td id="9237C33DBC4581D2FB2B8A94284056CD" box="[1251,1367,969,993]" gridcol="7" gridrow="8" pageId="4" pageNumber="578">-3</td>
|
||
</tr>
|
||
<tr id="D1E6AA41BC4581D2FF568AA828405121" box="[158,1367,1013,1037]" gridrow="9" pageId="4" pageNumber="578" rowspan-5="1" rowspan-6="1">
|
||
<th id="9237C33DBC4581D2FF568AA82C495121" box="[158,350,1013,1037]" gridcol="0" gridrow="9" pageId="4" pageNumber="578">tRNA Ser(AGN)</th>
|
||
<td id="9237C33DBC4581D2FE688AA82CE45121" box="[416,499,1013,1037]" gridcol="1" gridrow="9" pageId="4" pageNumber="578">5833</td>
|
||
<td id="9237C33DBC4581D2FE328AA82F735121" box="[506,612,1013,1037]" gridcol="2" gridrow="9" pageId="4" pageNumber="578">5881</td>
|
||
<td id="9237C33DBC4581D2FD628AA82FFB5121" box="[682,748,1013,1037]" gridcol="3" gridrow="9" pageId="4" pageNumber="578">+</td>
|
||
<td id="9237C33DBC4581D2FCFB8AA82E7A5121" box="[819,877,1013,1037]" gridcol="4" gridrow="9" pageId="4" pageNumber="578">49</td>
|
||
<td id="9237C33DBC4581D2FB2B8AA828405121" box="[1251,1367,1013,1037]" gridcol="7" gridrow="9" pageId="4" pageNumber="578">1</td>
|
||
</tr>
|
||
<tr id="D1E6AA41BC4581D2FF568D7C28405115" box="[158,1367,1057,1081]" gridrow="10" pageId="4" pageNumber="578" rowspan-5="1" rowspan-6="1">
|
||
<th id="9237C33DBC4581D2FF568D7C2C495115" box="[158,350,1057,1081]" gridcol="0" gridrow="10" pageId="4" pageNumber="578">tRNA Glu</th>
|
||
<td id="9237C33DBC4581D2FE688D7C2CE45115" box="[416,499,1057,1081]" gridcol="1" gridrow="10" pageId="4" pageNumber="578">5892</td>
|
||
<td id="9237C33DBC4581D2FE328D7C2F735115" box="[506,612,1057,1081]" gridcol="2" gridrow="10" pageId="4" pageNumber="578">5952</td>
|
||
<td id="9237C33DBC4581D2FD628D7C2FFB5115" box="[682,748,1057,1081]" gridcol="3" gridrow="10" pageId="4" pageNumber="578">+</td>
|
||
<td id="9237C33DBC4581D2FCFB8D7C2E7A5115" box="[819,877,1057,1081]" gridcol="4" gridrow="10" pageId="4" pageNumber="578">61</td>
|
||
<td id="9237C33DBC4581D2FB2B8D7C28405115" box="[1251,1367,1057,1081]" gridcol="7" gridrow="10" pageId="4" pageNumber="578">10</td>
|
||
</tr>
|
||
<tr id="D1E6AA41BC4581D2FF568D10284051CF" box="[158,1367,1101,1251]" gridrow="11" pageId="4" pageNumber="578">
|
||
<th id="9237C33DBC4581D2FF568D102C4951CF" box="[158,350,1101,1251]" gridcol="0" gridrow="11" pageId="4" pageNumber="578">ND6 Cytb tRNA Ser(UCN) tRNA Gln</th>
|
||
<td id="9237C33DBC4581D2FE688D102CE451CF" box="[416,499,1101,1251]" gridcol="1" gridrow="11" pageId="4" pageNumber="578">5950 6419 7521 7583</td>
|
||
<td id="9237C33DBC4581D2FE328D102F7351CF" box="[506,612,1101,1251]" gridcol="2" gridrow="11" pageId="4" pageNumber="578">6426 7522 7583 7642</td>
|
||
<td id="9237C33DBC4581D2FD628D102FFB51CF" box="[682,748,1101,1251]" gridcol="3" gridrow="11" pageId="4" pageNumber="578">+ + + -</td>
|
||
<td id="9237C33DBC4581D2FCFB8D102E7A51CF" box="[819,877,1101,1251]" gridcol="4" gridrow="11" pageId="4" pageNumber="578">477 1,104 63 60</td>
|
||
<td id="9237C33DBC4581D2FC7C8D10291A51CF" box="[948,1037,1101,1251]" gridcol="5" gridrow="11" pageId="4" pageNumber="578">ATA(M) ATG(M)</td>
|
||
<td id="9237C33DBC4581D2FB988D10299551CF" box="[1104,1154,1101,1251]" gridcol="6" gridrow="11" pageId="4" pageNumber="578">TAA TAG</td>
|
||
<td id="9237C33DBC4581D2FB2B8D10284051CF" box="[1251,1367,1101,1251]" gridcol="7" gridrow="11" pageId="4" pageNumber="578">-3 -8 -2 -1</td>
|
||
</tr>
|
||
<tr id="D1E6AA41BC4581D2FF568DAA28405023" box="[158,1367,1271,1295]" gridrow="12" pageId="4" pageNumber="578" rowspan-5="1" rowspan-6="1">
|
||
<th id="9237C33DBC4581D2FF568DAA2C495023" box="[158,350,1271,1295]" gridcol="0" gridrow="12" pageId="4" pageNumber="578">tRNA Tyr</th>
|
||
<td id="9237C33DBC4581D2FE688DAA2CE45023" box="[416,499,1271,1295]" gridcol="1" gridrow="12" pageId="4" pageNumber="578">7643</td>
|
||
<td id="9237C33DBC4581D2FE328DAA2F735023" box="[506,612,1271,1295]" gridcol="2" gridrow="12" pageId="4" pageNumber="578">7704</td>
|
||
<td id="9237C33DBC4581D2FD628DAA2FFB5023" box="[682,748,1271,1295]" gridcol="3" gridrow="12" pageId="4" pageNumber="578">-</td>
|
||
<td id="9237C33DBC4581D2FCFB8DAA2E7A5023" box="[819,877,1271,1295]" gridcol="4" gridrow="12" pageId="4" pageNumber="578">62</td>
|
||
<td id="9237C33DBC4581D2FB2B8DAA28405023" box="[1251,1367,1271,1295]" gridcol="7" gridrow="12" pageId="4" pageNumber="578">0</td>
|
||
</tr>
|
||
<tr id="D1E6AA41BC4581D2FF568C7E28405017" box="[158,1367,1315,1339]" gridrow="13" pageId="4" pageNumber="578" rowspan-5="1" rowspan-6="1">
|
||
<th id="9237C33DBC4581D2FF568C7E2C495017" box="[158,350,1315,1339]" gridcol="0" gridrow="13" pageId="4" pageNumber="578">tRNA Phe</th>
|
||
<td id="9237C33DBC4581D2FE688C7E2CE45017" box="[416,499,1315,1339]" gridcol="1" gridrow="13" pageId="4" pageNumber="578">7705</td>
|
||
<td id="9237C33DBC4581D2FE328C7E2F735017" box="[506,612,1315,1339]" gridcol="2" gridrow="13" pageId="4" pageNumber="578">7764</td>
|
||
<td id="9237C33DBC4581D2FD628C7E2FFB5017" box="[682,748,1315,1339]" gridcol="3" gridrow="13" pageId="4" pageNumber="578">-</td>
|
||
<td id="9237C33DBC4581D2FCFB8C7E2E7A5017" box="[819,877,1315,1339]" gridcol="4" gridrow="13" pageId="4" pageNumber="578">60</td>
|
||
<td id="9237C33DBC4581D2FB2B8C7E28405017" box="[1251,1367,1315,1339]" gridcol="7" gridrow="13" pageId="4" pageNumber="578">0</td>
|
||
</tr>
|
||
<tr id="D1E6AA41BC4581D2FF568C12284050BC" box="[158,1367,1359,1424]" gridrow="14" pageId="4" pageNumber="578">
|
||
<th id="9237C33DBC4581D2FF568C122C4950BC" box="[158,350,1359,1424]" gridcol="0" gridrow="14" pageId="4" pageNumber="578">ND5 tRNA His</th>
|
||
<td id="9237C33DBC4581D2FE688C122CE450BC" box="[416,499,1359,1424]" gridcol="1" gridrow="14" pageId="4" pageNumber="578">7765 9473</td>
|
||
<td id="9237C33DBC4581D2FE328C122F7350BC" box="[506,612,1359,1424]" gridcol="2" gridrow="14" pageId="4" pageNumber="578">9472 9534</td>
|
||
<td id="9237C33DBC4581D2FD628C122FFB50BC" box="[682,748,1359,1424]" gridcol="3" gridrow="14" pageId="4" pageNumber="578">- -</td>
|
||
<td id="9237C33DBC4581D2FCFB8C122E7A50BC" box="[819,877,1359,1424]" gridcol="4" gridrow="14" pageId="4" pageNumber="578">1,708 62</td>
|
||
<td id="9237C33DBC4581D2FC7C8C12291A50BC" box="[948,1037,1359,1424]" gridcol="5" gridrow="14" pageId="4" pageNumber="578">ATT(I)</td>
|
||
<td id="9237C33DBC4581D2FB988C12299550BC" box="[1104,1154,1359,1424]" gridcol="6" gridrow="14" pageId="4" pageNumber="578">T--</td>
|
||
<td id="9237C33DBC4581D2FB2B8C12284050BC" box="[1251,1367,1359,1424]" gridcol="7" gridrow="14" pageId="4" pageNumber="578">0 0</td>
|
||
</tr>
|
||
<tr id="D1E6AA41BC4581D2FF568CF928405348" box="[158,1367,1444,1636]" gridrow="15" pageId="4" pageNumber="578">
|
||
<th id="9237C33DBC4581D2FF568CF92C495348" box="[158,350,1444,1636]" gridcol="0" gridrow="15" pageId="4" pageNumber="578">ND4 ND4L tRNA Thr tRNA Pro ND1</th>
|
||
<td id="9237C33DBC4581D2FE688CF92CE45348" box="[416,499,1444,1636]" gridcol="1" gridrow="15" pageId="4" pageNumber="578">9534 10871 11153 11216 11280</td>
|
||
<td id="9237C33DBC4581D2FE328CF92F735348" box="[506,612,1444,1636]" gridcol="2" gridrow="15" pageId="4" pageNumber="578">10877 11149 11216 11279 12212</td>
|
||
<td id="9237C33DBC4581D2FD628CF92FFB5348" box="[682,748,1444,1636]" gridcol="3" gridrow="15" pageId="4" pageNumber="578">- - + - -</td>
|
||
<td id="9237C33DBC4581D2FCFB8CF92E7A5348" box="[819,877,1444,1636]" gridcol="4" gridrow="15" pageId="4" pageNumber="578">1,344 279 64 64 933</td>
|
||
<td id="9237C33DBC4581D2FC7C8CF9291A5348" box="[948,1037,1444,1636]" gridcol="5" gridrow="15" pageId="4" pageNumber="578">ATG(M) ATG(M) ATT(I)</td>
|
||
<td id="9237C33DBC4581D2FB988CF929955348" box="[1104,1154,1444,1636]" gridcol="6" gridrow="15" pageId="4" pageNumber="578">TAA TAA TAA</td>
|
||
<td id="9237C33DBC4581D2FB2B8CF928405348" box="[1251,1367,1444,1636]" gridcol="7" gridrow="15" pageId="4" pageNumber="578">-1 -7 3 -1 0</td>
|
||
</tr>
|
||
<tr id="D1E6AA41BC4581D2FF568F25284053BC" box="[158,1367,1656,1680]" gridrow="16" pageId="4" pageNumber="578" rowspan-5="1" rowspan-6="1">
|
||
<th id="9237C33DBC4581D2FF568F252C4953BC" box="[158,350,1656,1680]" gridcol="0" gridrow="16" pageId="4" pageNumber="578">tRNA Leu(UUA)</th>
|
||
<td id="9237C33DBC4581D2FE688F252CE453BC" box="[416,499,1656,1680]" gridcol="1" gridrow="16" pageId="4" pageNumber="578">12213</td>
|
||
<td id="9237C33DBC4581D2FE328F252F7353BC" box="[506,612,1656,1680]" gridcol="2" gridrow="16" pageId="4" pageNumber="578">12271</td>
|
||
<td id="9237C33DBC4581D2FD628F252FFB53BC" box="[682,748,1656,1680]" gridcol="3" gridrow="16" pageId="4" pageNumber="578">-</td>
|
||
<td id="9237C33DBC4581D2FCFB8F252E7A53BC" box="[819,877,1656,1680]" gridcol="4" gridrow="16" pageId="4" pageNumber="578">59</td>
|
||
<td id="9237C33DBC4581D2FB2B8F25284053BC" box="[1251,1367,1656,1680]" gridcol="7" gridrow="16" pageId="4" pageNumber="578">-10</td>
|
||
</tr>
|
||
<tr id="D1E6AA41BC4581D2FF568FF9284053C9" box="[158,1367,1700,1765]" gridrow="17" pageId="4" pageNumber="578" rowspan-5="1" rowspan-6="1">
|
||
<th id="9237C33DBC4581D2FF568FF92C4953C9" box="[158,350,1700,1765]" gridcol="0" gridrow="17" pageId="4" pageNumber="578">tRNA Leu(CUA) 16S rRNA</th>
|
||
<td id="9237C33DBC4581D2FE688FF92CE453C9" box="[416,499,1700,1765]" gridcol="1" gridrow="17" pageId="4" pageNumber="578">12288 12348</td>
|
||
<td id="9237C33DBC4581D2FE328FF92F7353C9" box="[506,612,1700,1765]" gridcol="2" gridrow="17" pageId="4" pageNumber="578">12347 13497</td>
|
||
<td id="9237C33DBC4581D2FD628FF92FFB53C9" box="[682,748,1700,1765]" gridcol="3" gridrow="17" pageId="4" pageNumber="578">- -</td>
|
||
<td id="9237C33DBC4581D2FCFB8FF92E7A53C9" box="[819,877,1700,1765]" gridcol="4" gridrow="17" pageId="4" pageNumber="578">60 1,150</td>
|
||
<td id="9237C33DBC4581D2FB2B8FF9284053C9" box="[1251,1367,1700,1765]" gridcol="7" gridrow="17" pageId="4" pageNumber="578">16 0</td>
|
||
</tr>
|
||
<tr id="D1E6AA41BC4581D2FF568FA42840523D" box="[158,1367,1785,1809]" gridrow="18" pageId="4" pageNumber="578" rowspan-5="1" rowspan-6="1">
|
||
<th id="9237C33DBC4581D2FF568FA42C49523D" box="[158,350,1785,1809]" gridcol="0" gridrow="18" pageId="4" pageNumber="578">tRNA Val</th>
|
||
<td id="9237C33DBC4581D2FE688FA42CE4523D" box="[416,499,1785,1809]" gridcol="1" gridrow="18" pageId="4" pageNumber="578">13498</td>
|
||
<td id="9237C33DBC4581D2FE328FA42F73523D" box="[506,612,1785,1809]" gridcol="2" gridrow="18" pageId="4" pageNumber="578">13552</td>
|
||
<td id="9237C33DBC4581D2FD628FA42FFB523D" box="[682,748,1785,1809]" gridcol="3" gridrow="18" pageId="4" pageNumber="578">-</td>
|
||
<td id="9237C33DBC4581D2FCFB8FA42E7A523D" box="[819,877,1785,1809]" gridcol="4" gridrow="18" pageId="4" pageNumber="578">55</td>
|
||
<td id="9237C33DBC4581D2FB2B8FA42840523D" box="[1251,1367,1785,1809]" gridcol="7" gridrow="18" pageId="4" pageNumber="578">0</td>
|
||
</tr>
|
||
<tr id="D1E6AA41BC4581D2FF568E7828405248" box="[158,1367,1829,1892]" gridrow="19" pageId="4" pageNumber="578" rowspan-5="1" rowspan-6="1">
|
||
<th id="9237C33DBC4581D2FF568E782C495248" box="[158,350,1829,1892]" gridcol="0" gridrow="19" pageId="4" pageNumber="578">12S rRNA Non-coding region</th>
|
||
<td id="9237C33DBC4581D2FE688E782CE45248" box="[416,499,1829,1892]" gridcol="1" gridrow="19" pageId="4" pageNumber="578">13553 14327</td>
|
||
<td id="9237C33DBC4581D2FE328E782F735248" box="[506,612,1829,1892]" gridcol="2" gridrow="19" pageId="4" pageNumber="578">14326 14916</td>
|
||
<td id="9237C33DBC4581D2FD628E782FFB5248" box="[682,748,1829,1892]" gridcol="3" gridrow="19" pageId="4" pageNumber="578">-</td>
|
||
<td id="9237C33DBC4581D2FCFB8E782E7A5248" box="[819,877,1829,1892]" gridcol="4" gridrow="19" pageId="4" pageNumber="578">774 590</td>
|
||
<td id="9237C33DBC4581D2FB2B8E7828405248" box="[1251,1367,1829,1892]" gridcol="7" gridrow="19" pageId="4" pageNumber="578">0 0</td>
|
||
</tr>
|
||
</table>
|
||
</paragraph>
|
||
<paragraph id="6F69A803BC457E28FF0F8EF92E6D546C" blockId="4.[151,1436,1956,2021]" lastBlockId="5.[151,1436,151,320]" lastPageId="5" lastPageNumber="579" pageId="4" pageNumber="578">
|
||
The mitochondrial genome of
|
||
<taxonomicName id="A8D6D380BC457E29FDED8EF82FBB5291" baseAuthorityName="Verhoeff" baseAuthorityYear="1937" box="[549,684,1956,1981]" class="Diplopoda" family="Julidae" genus="Anaulaciulus" kingdom="Animalia" order="Julida" pageId="4" pageNumber="578" phylum="Arthropoda" rank="species" species="koreanus">
|
||
<emphasis id="5DA27411BC457E29FDED8EF82FBB5291" box="[549,684,1956,1981]" italics="true" pageId="4" pageNumber="578">A. koreanus</emphasis>
|
||
</taxonomicName>
|
||
has only one large non-coding region of 590 bp located between 12S
|
||
<emphasis id="5DA27411BC457E29FF038E912C1C52CF" box="[203,267,1996,2019]" italics="true" pageId="4" pageNumber="578">rRNA</emphasis>
|
||
and
|
||
<emphasis id="5DA27411BC457E29FE8B8E912C8752FB" box="[323,400,1993,2019]" italics="true" pageId="4" pageNumber="578">tRNA Ile</emphasis>
|
||
. This is different from those of other previously sequenced juliformian species which have two non-coding regions (
|
||
<bibRefCitation id="0B47D5F2BC447E28FE7189C52F81559C" author="Lavrov" box="[441,662,151,176]" pageId="5" pageNumber="579" refString="Lavrov, D., Boore, J. & Brown, W. (2002) Complete mtDNA sequences of two millipedes suggest a new model for mitochondrial gene rearrangements: duplication and nonrandom loss. Molecular Biology and Evolution, 19, 163. https: // doi. org / 10.1093 / oxfordjournals. molbev. a 004068" type="journal article" year="2002">
|
||
Lavrov
|
||
<emphasis id="5DA27411BC447E28FDDE89C42F45559C" box="[534,594,151,176]" italics="true" pageId="5" pageNumber="579">et al.</emphasis>
|
||
2002
|
||
</bibRefCitation>
|
||
,
|
||
<bibRefCitation id="0B47D5F2BC447E28FD6D89C52E72559C" author="Woo" box="[677,869,151,176]" pageId="5" pageNumber="579" refString="Woo, H. J., Lee, Y. S., Park, S. J., Lim, J. T., Jang, K. H., Choi, E. H., Choi, Y. G. & Hwang, U. W. (2007) Complete mitochondrial genome of a troglobite millipede Antrokoreana gracilipes (Diplopoda, Juliformia, Julida), and juliformian phylogeny. Molecules and Cells, 23 (2), 182 - 191." type="journal article" year="2007">
|
||
Woo
|
||
<emphasis id="5DA27411BC447E28FD2B89C42E08559C" box="[739,799,151,176]" italics="true" pageId="5" pageNumber="579">et al.</emphasis>
|
||
2007
|
||
</bibRefCitation>
|
||
). The large non-coding region has a 77.5% A+T content, which is higher than the overall A+T content of the mitochondrial genome (75.1%). The higher A+T content may favor the melting of the DNA strands required to initiate replication and transcription. Thus, the largest non-coding region is considered as a plausible control region for initiating replication and transcription of the mitochondrial encoded genes (
|
||
<bibRefCitation id="0B47D5F2BC447E28FDDF887A2FA4546C" author="Clayton" box="[535,691,295,320]" pageId="5" pageNumber="579" refString="Clayton, D. A. (1984) Transcription of the mammalian mitochondrial genome. Annual Review of Biochemistry, 53, 573 - 594. https: // doi. org / 10.1146 / annurev. bi. 53.070184.003041" type="journal article" year="1984">Clayton 1984</bibRefCitation>
|
||
,
|
||
<bibRefCitation id="0B47D5F2BC447E28FD7688752E79546C" author="Cao" box="[702,878,295,320]" pageId="5" pageNumber="579" refString="Cao, L., Kenchington, E., Zouros, E. & Rodakis, G. C. (2004) Evidence that the large noncoding sequence is the main control region of maternally and paternally transmitted mitochondrial genomes of the marine mussel (Mytilus spp.). Genetics, 167 (2), 835 - 850. https: // doi. org / 10.1534 / genetics. 103.026187" type="journal article" year="2004">
|
||
Cao
|
||
<emphasis id="5DA27411BC447E28FD3A88742E3C546C" box="[754,811,295,320]" italics="true" pageId="5" pageNumber="579">et al.</emphasis>
|
||
2004
|
||
</bibRefCitation>
|
||
).
|
||
</paragraph>
|
||
<caption id="3BA9F88BBC447E28FF5F8AC129785123" httpUri="https://zenodo.org/record/1008870/files/figure.png" pageId="5" pageNumber="579" targetBox="[355,1240,386,891]" targetPageId="5">
|
||
<paragraph id="6F69A803BC447E28FF5F8AC129785123" blockId="5.[151,1436,924,1039]" pageId="5" pageNumber="579">
|
||
<emphasis id="5DA27411BC447E28FF5F8AC12CA556DC" bold="true" pageId="5" pageNumber="579">
|
||
FIGURE 2. Potential stem and loop structures of the junctional sequences of (A) COI-COII, (B) ATP8-ATP6, (C) ND6- Cytb, (D) ND4L-ND4, and (E) ATP6-COIII, and (F) a non-coding region in the mitochondrial genome of
|
||
<taxonomicName id="A8D6D380BC447E28FAC78AE62CBA56DC" authority="(Verhoeff, 1937)" authorityName="Verhoeff" authorityYear="1937" baseAuthorityName="Verhoeff" baseAuthorityYear="1937" class="Diplopoda" family="Julidae" genus="Anaulaciulus" kingdom="Animalia" order="Julida" pageId="5" pageNumber="579" phylum="Arthropoda" rank="species" species="koreanus">
|
||
<emphasis id="5DA27411BC447E28FAC78AE62DEF56DC" bold="true" italics="true" pageId="5" pageNumber="579">Anaulaciulus koreanus</emphasis>
|
||
(Verhoeff, 1937)
|
||
</taxonomicName>
|
||
.
|
||
</emphasis>
|
||
The anticodon sequences are boxed, and termination codons or incomplete termination codons are drawn with an underline or side-line. The number of nucleotide sequences in each loop is shown.
|
||
</paragraph>
|
||
</caption>
|
||
<paragraph id="6F69A803BC447E28FF0F8D662FFD51EC" blockId="5.[151,1437,1083,2022]" pageId="5" pageNumber="579">
|
||
The large non-coding region has a single stem and loop structure with the conserved 3' flanking "G(A)nT" and the 5' flanking "TATA" sequences (
|
||
<figureCitation id="F7EDB486BC447E28FDE18D022F665154" box="[553,625,1119,1144]" captionStart="FIGURE 4" captionStartId="7.[151,250,1118,1140]" captionTargetBox="[166,1423,362,1067]" captionTargetId="figure@7.[151,1436,345,1096]" captionTargetPageId="7" captionText="FIGURE 4. Comparison diagram of mitochondrial gene arrangement patterns of nine millipede species. One-letter codes corresponding to the amino acids of the tRNAs are used. Diagram is adapted and modified from Brewer et al. (2013)." httpUri="https://zenodo.org/record/1008874/files/figure.png" pageId="5" pageNumber="579">Fig. 4</figureCitation>
|
||
). The motif of the single stem and loop structure has been observed in other arthropods (
|
||
<bibRefCitation id="0B47D5F2BC447E28FEA98DDE2F2751B0" author="Zhang" box="[353,560,1155,1180]" pageId="5" pageNumber="579" refString="Zhang, D., Szymura, J. M. & Hewitt, G. M. (1995) Evolution and structural conservation of the control region of insect mitochondrial DNA. Journal of Molecular Evolution, 40, 382 - 391. https: // doi. org / 10.1007 / BF 00164024" type="journal article" year="1995">
|
||
Zhang
|
||
<emphasis id="5DA27411BC447E28FE7B8DD82CFB51B0" box="[435,492,1155,1180]" italics="true" pageId="5" pageNumber="579">et al.</emphasis>
|
||
1995
|
||
</bibRefCitation>
|
||
,
|
||
<bibRefCitation id="0B47D5F2BC447E28FDF48DDE2E2C51B0" author="Zhang" box="[572,827,1155,1180]" pageId="5" pageNumber="579" refString="Zhang, D. X. & Hewitt, G. M. (1997) Insect mitochondrial control region: a review of its structure, evolution and usefulness in evolutionary studies. Biochemical Systematics and Ecology, 25, 99 - 120." type="journal article" year="1997">Zhang & Hewitt 1997</bibRefCitation>
|
||
,
|
||
<bibRefCitation id="0B47D5F2BC447E28FC8F8DDE290E51B0" author="Brehm" box="[839,1049,1155,1180]" pageId="5" pageNumber="579" refString="Brehm, A., Harris, D. J., Hernandez, M., Cabrera, V. M., Larruga, J. M., Pinto, F. M. & Gonzalez, A. M. (2001) Structure and evolution of the mitochondrial DNA complete control region in the Drosophila subobscura subgroup. Insect Molecular Biology, 10, 573 - 578. https: // doi. org / 10.1046 / j. 0962 - 1075.2001.00295. x" type="journal article" year="2001">
|
||
Brehm
|
||
<emphasis id="5DA27411BC447E28FC548DD82EC151B0" box="[924,982,1155,1180]" italics="true" pageId="5" pageNumber="579">et al.</emphasis>
|
||
2001
|
||
</bibRefCitation>
|
||
,
|
||
<bibRefCitation id="0B47D5F2BC447E28FBEE8DDE283751B0" author="Schultheis" box="[1062,1312,1155,1180]" pageId="5" pageNumber="579" refString="Schultheis, A. S., Weigt, L. A. & Hendricks, A. C. (2002) Arrangement and structural conservation of the mitochondrial control region of two species of Plecoptera: utility of tandem repeat-containing regions in studies of population genetics and evolutionary history. Insect Molecular Biology, 11, 605 - 610. https: // doi. org / 10.1046 / j. 1365 - 2583.2002.00371. x" type="journal article" year="2002">
|
||
Schultheis
|
||
<emphasis id="5DA27411BC447E28FB6B8DD829CA51B0" box="[1187,1245,1155,1180]" italics="true" pageId="5" pageNumber="579">et al.</emphasis>
|
||
2002
|
||
</bibRefCitation>
|
||
, Cha
|
||
<emphasis id="5DA27411BC447E28FAAA8DD8288B51B0" box="[1378,1436,1155,1180]" italics="true" pageId="5" pageNumber="579">et al.</emphasis>
|
||
2004); however, this is the first report for Diplopoda.
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="27CCFB88BC447E2AFF0F8D96297A540E" lastPageId="7" lastPageNumber="581" pageId="5" pageNumber="579" type="discussion">
|
||
<paragraph id="6F69A803BC447E28FF0F8D96292B5093" blockId="5.[151,1437,1083,2022]" pageId="5" pageNumber="579">
|
||
<emphasis id="5DA27411BC447E28FF0F8D962FE251C8" bold="true" box="[199,757,1227,1252]" pageId="5" pageNumber="579">Gene arrangement among millipede orders,</emphasis>
|
||
While the gene arrangement patterns of ten millipede mitochondrial genomes are similar to one another (Fig. 5), the sphaerotheriid species appears to be very different from other millipedes, but similar to that of
|
||
<taxonomicName id="A8D6D380BC447E28FD4A8C4E2E7E5000" baseAuthorityName="Linnaeus" baseAuthorityYear="1758" box="[642,873,1299,1324]" class="Merostomata" family="Limulidae" genus="Limulus" kingdom="Animalia" order="Xiphosurida" pageId="5" pageNumber="579" phylum="Arthropoda" rank="species" species="polyphemus">
|
||
<emphasis id="5DA27411BC447E28FD4A8C4E2E7E5000" box="[642,873,1299,1324]" italics="true" pageId="5" pageNumber="579">Limulus polyphemus</emphasis>
|
||
</taxonomicName>
|
||
, considered as an arthropod ground pattern (
|
||
<bibRefCitation id="0B47D5F2BC447E28FA948C492C0F507C" author="Dong" pageId="5" pageNumber="579" refString="Dong, Y., Xu, J. J., Hao, S. J. & Sun, H. Y. (2012) The complete mitochondrial genome of the giant pill millipede, Sphaerotheriidae sp. (Myriapoda: Diplopoda: Sphaerotheriida). Mitochondrial DNA, 23 (5), 333 - 335. https: // doi. org / 10.3109 / 19401736.2012.683184" type="journal article" year="2012">
|
||
Dong
|
||
<emphasis id="5DA27411BC447E28FF5F8C652DC5507C" box="[151,210,1335,1360]" italics="true" pageId="5" pageNumber="579">et al.</emphasis>
|
||
2012
|
||
</bibRefCitation>
|
||
). The biggest differences between the mitochondrial genome of the order
|
||
<taxonomicName id="A8D6D380BC447E28FBA68C6A2808507C" authorityName="Brandt" authorityYear="1833" box="[1134,1311,1335,1360]" class="Diplopoda" kingdom="Animalia" order="Sphaerotheriida" pageId="5" pageNumber="579" phylum="Arthropoda" rank="order">Sphaerotheriida</taxonomicName>
|
||
versus the genomes of the other diplopod orders are the translocation of
|
||
<emphasis id="5DA27411BC447E28FC948C022EBC5045" box="[860,939,1371,1398]" italics="true" pageId="5" pageNumber="579">tRNA Tyr</emphasis>
|
||
into the position between
|
||
<emphasis id="5DA27411BC447E28FB168C022804505B" box="[1246,1299,1375,1399]" italics="true" pageId="5" pageNumber="579">ND2</emphasis>
|
||
and
|
||
<emphasis id="5DA27411BC447E28FA858C02286A505A" box="[1357,1405,1375,1398]" italics="true" pageId="5" pageNumber="579">COI</emphasis>
|
||
in association with the translocations of
|
||
<emphasis id="5DA27411BC447E28FD8D8CDF2F6C50B7" box="[581,635,1410,1435]" italics="true" pageId="5" pageNumber="579">ND6</emphasis>
|
||
and
|
||
<emphasis id="5DA27411BC447E28FD7C8CDF2FFE50B7" box="[692,745,1410,1435]" italics="true" pageId="5" pageNumber="579">Cytb</emphasis>
|
||
. These translocations are among the characters that separate the mitochondrial genome of the order
|
||
<taxonomicName id="A8D6D380BC447E28FD868CFB2FE85093" authorityName="Brandt" authorityYear="1833" box="[590,767,1446,1471]" class="Diplopoda" kingdom="Animalia" order="Sphaerotheriida" pageId="5" pageNumber="579" phylum="Arthropoda" rank="order">Sphaerotheriida</taxonomicName>
|
||
from other diplopod orders.
|
||
</paragraph>
|
||
<paragraph id="6F69A803BC447E28FF0F8C902C38531C" blockId="5.[151,1437,1083,2022]" pageId="5" pageNumber="579">
|
||
Similarly, the order
|
||
<taxonomicName id="A8D6D380BC447E28FE638C902F2B50CA" box="[427,572,1485,1510]" class="Diplopoda" kingdom="Animalia" order="Polydesmida" pageId="5" pageNumber="579" phylum="Arthropoda" rank="order">Polydesmida</taxonomicName>
|
||
lacks
|
||
<emphasis id="5DA27411BC447E28FD4E8C932FCD50F4" box="[646,730,1482,1509]" italics="true" pageId="5" pageNumber="579">tRNA Cys</emphasis>
|
||
between
|
||
<emphasis id="5DA27411BC447E28FC808C932E6A50CA" box="[840,893,1486,1510]" italics="true" pageId="5" pageNumber="579">ND2</emphasis>
|
||
and
|
||
<emphasis id="5DA27411BC447E28FC7E8C932EF150C9" box="[950,998,1486,1509]" italics="true" pageId="5" pageNumber="579">COI</emphasis>
|
||
, whereas this gene occurs in the other diplopod orders. Therefore, the absence of
|
||
<emphasis id="5DA27411BC447E28FD5E8CA92FFD50D3" box="[662,746,1521,1547]" italics="true" pageId="5" pageNumber="579">tRNA Cys</emphasis>
|
||
between
|
||
<emphasis id="5DA27411BC447E28FC978CA92E825320" box="[863,917,1524,1548]" italics="true" pageId="5" pageNumber="579">ND2</emphasis>
|
||
and
|
||
<emphasis id="5DA27411BC447E28FC1C8CA829125320" box="[980,1029,1525,1548]" italics="true" pageId="5" pageNumber="579">COI</emphasis>
|
||
may be a synapomorphy of order
|
||
<taxonomicName id="A8D6D380BC447E28FF5F8F4A2C3C531C" box="[151,299,1559,1584]" class="Diplopoda" kingdom="Animalia" order="Polydesmida" pageId="5" pageNumber="579" phylum="Arthropoda" rank="order">Polydesmida</taxonomicName>
|
||
.
|
||
</paragraph>
|
||
<paragraph id="6F69A803BC447E28FF0F8F6129FA5222" blockId="5.[151,1437,1083,2022]" pageId="5" pageNumber="579">
|
||
The close relationship between the order
|
||
<taxonomicName id="A8D6D380BC447E28FD6B8F612E315379" authorityName="Bollman" authorityYear="1893" box="[675,806,1596,1621]" class="Diplopoda" kingdom="Animalia" order="Callipodida" pageId="5" pageNumber="579" phylum="Arthropoda" rank="order">Callipodida</taxonomicName>
|
||
and the superorder Juliformia was previously reported (
|
||
<bibRefCitation id="0B47D5F2BC447E28FF568F022CB05354" author="Sierwald" box="[158,423,1631,1656]" pageId="5" pageNumber="579" refString="Sierwald, P. & Bond, J. E. (2007) Current status of the myriapod class diplopoda (Millipedes): Taxonomic diversity and phylogeny. Annual Review of Entomology, 52, 401 - 420. https: // doi. org / 10.1146 / annurev. ento. 52.111805.090210" type="journal article" year="2007">Sierwald & Bond 2007</bibRefCitation>
|
||
, Brewer
|
||
<emphasis id="5DA27411BC447E28FDC58F3C2F515354" box="[525,582,1631,1656]" italics="true" pageId="5" pageNumber="579">et al.</emphasis>
|
||
2013).
|
||
<bibRefCitation id="0B47D5F2BC447E28FD558F022EA35354" author="Sierwald" box="[669,948,1631,1656]" pageId="5" pageNumber="579" refString="Sierwald, P. & Bond, J. E. (2007) Current status of the myriapod class diplopoda (Millipedes): Taxonomic diversity and phylogeny. Annual Review of Entomology, 52, 401 - 420. https: // doi. org / 10.1146 / annurev. ento. 52.111805.090210" type="journal article" year="2007">Sierwald & Bond (2007)</bibRefCitation>
|
||
suggested that two orders,
|
||
<taxonomicName id="A8D6D380BC447E28FB218F02287B5354" authorityName="Bollman" authorityYear="1893" box="[1257,1388,1631,1656]" class="Diplopoda" kingdom="Animalia" order="Callipodida" pageId="5" pageNumber="579" phylum="Arthropoda" rank="order">Callipodida</taxonomicName>
|
||
and Chordeumatida, form a clade with the superorder Juliformia (
|
||
<bibRefCitation id="0B47D5F2BC447E28FC938FD9297B53B0" author="Sierwald" box="[859,1132,1668,1693]" pageId="5" pageNumber="579" refString="Sierwald, P. & Bond, J. E. (2007) Current status of the myriapod class diplopoda (Millipedes): Taxonomic diversity and phylogeny. Annual Review of Entomology, 52, 401 - 420. https: // doi. org / 10.1146 / annurev. ento. 52.111805.090210" type="journal article" year="2007">Sierwald & Bond 2007</bibRefCitation>
|
||
). Their suggestion may be supported by the similar gene arrangement of
|
||
<emphasis id="5DA27411BC447E28FD5F8FF52FD85393" box="[663,719,1704,1727]" italics="true" pageId="5" pageNumber="579">CytB</emphasis>
|
||
and
|
||
<emphasis id="5DA27411BC447E28FCCD8FF52E2E5393" box="[773,825,1704,1727]" italics="true" pageId="5" pageNumber="579">ND5</emphasis>
|
||
genes of both
|
||
<taxonomicName id="A8D6D380BC447E28FC158FFA297753EC" authorityName="Bollman" authorityYear="1893" box="[989,1120,1703,1728]" class="Diplopoda" kingdom="Animalia" order="Callipodida" pageId="5" pageNumber="579" phylum="Arthropoda" rank="order">Callipodida</taxonomicName>
|
||
and Juliformia. Such a gene arrangement pattern is also different from those of other orders, which lack
|
||
<emphasis id="5DA27411BC447E28FC278F92292853F6" box="[1007,1087,1740,1766]" italics="true" pageId="5" pageNumber="579">tRNA Tyr</emphasis>
|
||
(e.g., the order
|
||
<taxonomicName id="A8D6D380BC447E28FB3D8F93288753CB" box="[1269,1424,1742,1767]" class="Diplopoda" kingdom="Animalia" order="Platydesmida" pageId="5" pageNumber="579" phylum="Arthropoda" rank="order">Platydesmida</taxonomicName>
|
||
), or lack
|
||
<emphasis id="5DA27411BC447E28FF238FAB2C29522C" box="[235,318,1778,1805]" italics="true" pageId="5" pageNumber="579">tRNA Gln</emphasis>
|
||
,
|
||
<emphasis id="5DA27411BC447E28FE848FAB2C8B522C" box="[332,412,1778,1805]" italics="true" pageId="5" pageNumber="579">tRNA Tyr</emphasis>
|
||
, and
|
||
<emphasis id="5DA27411BC447E28FE118FAB2F39522C" box="[473,558,1778,1805]" italics="true" pageId="5" pageNumber="579">tRNA Phe</emphasis>
|
||
and has translocation of
|
||
<emphasis id="5DA27411BC447E28FC8E8FAB2E8E522C" box="[838,921,1778,1805]" italics="true" pageId="5" pageNumber="579">tRNA Thr</emphasis>
|
||
(e.g., the order
|
||
<taxonomicName id="A8D6D380BC447E28FB838FA829F65222" box="[1099,1249,1781,1806]" class="Diplopoda" kingdom="Animalia" order="Polydesmida" pageId="5" pageNumber="579" phylum="Arthropoda" rank="order">Polydesmida</taxonomicName>
|
||
).
|
||
</paragraph>
|
||
<paragraph id="6F69A803BC447E2BFF0F8E472E5D54A2" blockId="5.[151,1437,1083,2022]" lastBlockId="6.[151,1436,151,398]" lastPageId="6" lastPageNumber="580" pageId="5" pageNumber="579">
|
||
In the superorder Juliformia, three hypotheses of phylogenetic relationship among its three orders have been presented so far (
|
||
<bibRefCitation id="0B47D5F2BC447E28FE948E602CEA527A" author="Enghoff" box="[348,509,1853,1878]" pageId="5" pageNumber="579" refString="Enghoff, H. (1984) Phylogeny of millipedes - a cladistic analysis. Journal of Zoological Systematics and Evolutionary Research, 22, 8 - 26. https: // doi. org / 10.1111 / j. 14390469.1984. tb 00559. x" type="journal article" year="1984">Enghoff 1984</bibRefCitation>
|
||
,
|
||
<bibRefCitation id="0B47D5F2BC447E28FDC28E602FFC527A" author="Enghoff" box="[522,747,1853,1878]" pageId="5" pageNumber="579" refString="Enghoff, H., Dohle, W. & Blower, J. G. (1993) Anamorphosis in millipedes (Diplopoda): the present state of knowledge with some developmental and phylogenetic considerations. Zoological Journal of the Linnean Society, 109, 103 - 234. https: // doi. org / 10.1111 / j. 1096 - 3642.1993. tb 00305. x" type="journal article" year="1993">
|
||
Enghoff
|
||
<emphasis id="5DA27411BC447E28FDA58E632FBF527A" box="[621,680,1853,1878]" italics="true" pageId="5" pageNumber="579">et al.</emphasis>
|
||
1993
|
||
</bibRefCitation>
|
||
,
|
||
<bibRefCitation id="0B47D5F2BC447E28FD308E602EF6527A" author="Sierwald" box="[760,993,1853,1878]" pageId="5" pageNumber="579" refString="Sierwald, P., Shear, W. A., Shelley, R. M. & Bond, J. E. (2003) Millipede phylogeny revisited in the light of the enigmatic order Siphoniulida. Journal of Zoological Systematics and Evolutionary Research, 41, 87 - 99. https: // doi. org / 10.1046 / j. 1439 - 0469.2003.00202. x" type="journal article" year="2003">
|
||
Sierwald
|
||
<emphasis id="5DA27411BC447E28FCAC8E632E89527A" box="[868,926,1853,1878]" italics="true" pageId="5" pageNumber="579">et al.</emphasis>
|
||
2003
|
||
</bibRefCitation>
|
||
,
|
||
<bibRefCitation id="0B47D5F2BC447E28FC268E6329BE527A" author="Woo" box="[1006,1193,1853,1878]" pageId="5" pageNumber="579" refString="Woo, H. J., Lee, Y. S., Park, S. J., Lim, J. T., Jang, K. H., Choi, E. H., Choi, Y. G. & Hwang, U. W. (2007) Complete mitochondrial genome of a troglobite millipede Antrokoreana gracilipes (Diplopoda, Juliformia, Julida), and juliformian phylogeny. Molecules and Cells, 23 (2), 182 - 191." type="journal article" year="2007">
|
||
Woo
|
||
<emphasis id="5DA27411BC447E28FBE48E632971527A" box="[1068,1126,1853,1878]" italics="true" pageId="5" pageNumber="579">et al.</emphasis>
|
||
2007
|
||
</bibRefCitation>
|
||
, Brewer
|
||
<emphasis id="5DA27411BC447E28FAD98E63285C527A" box="[1297,1355,1853,1878]" italics="true" pageId="5" pageNumber="579">et al.</emphasis>
|
||
2013).
|
||
<bibRefCitation id="0B47D5F2BC447E28FF5F8E3C2C5F5256" author="Enghoff" box="[151,328,1889,1914]" pageId="5" pageNumber="579" refString="Enghoff, H. (1984) Phylogeny of millipedes - a cladistic analysis. Journal of Zoological Systematics and Evolutionary Research, 22, 8 - 26. https: // doi. org / 10.1111 / j. 14390469.1984. tb 00559. x" type="journal article" year="1984">Enghoff (1984)</bibRefCitation>
|
||
,
|
||
<bibRefCitation id="0B47D5F2BC447E28FE9F8E3C2F545256" box="[343,579,1889,1914]" pageId="5" pageNumber="579" refString="Enghoff, H., Dohle, W. & Blower, J. G. (1993) Anamorphosis in millipedes (Diplopoda): the present state of knowledge with some developmental and phylogenetic considerations. Zoological Journal of the Linnean Society, 109, 103 - 234. https: // doi. org / 10.1111 / j. 1096 - 3642.1993. tb 00305. x" type="journal article">
|
||
Enghoff
|
||
<emphasis id="5DA27411BC447E28FE748E3F2CF95256" box="[444,494,1889,1914]" italics="true" pageId="5" pageNumber="579">et al</emphasis>
|
||
(1993)
|
||
</bibRefCitation>
|
||
and Brewer
|
||
<emphasis id="5DA27411BC447E28FD138E3F2E025256" box="[731,789,1889,1914]" italics="true" pageId="5" pageNumber="579">et al.</emphasis>
|
||
(2013) reported a close relationship between
|
||
<taxonomicName id="A8D6D380BC447E28FAEF8E3C287D5256" authorityName="Brandt" authorityYear="1833" box="[1319,1386,1889,1914]" class="Diplopoda" kingdom="Animalia" order="Julida" pageId="5" pageNumber="579" phylum="Arthropoda" rank="order">Julida</taxonomicName>
|
||
and
|
||
<taxonomicName id="A8D6D380BC447E28FF5F8ED82C2052B2" box="[151,311,1925,1950]" class="Diplopoda" kingdom="Animalia" order="Spirostreptida" pageId="5" pageNumber="579" phylum="Arthropoda" rank="order">Spirostreptida</taxonomicName>
|
||
, whereas
|
||
<bibRefCitation id="0B47D5F2BC447E28FE628ED82FB152B2" box="[426,678,1925,1950]" pageId="5" pageNumber="579" refString="Sierwald, P., Shear, W. A., Shelley, R. M. & Bond, J. E. (2003) Millipede phylogeny revisited in the light of the enigmatic order Siphoniulida. Journal of Zoological Systematics and Evolutionary Research, 41, 87 - 99. https: // doi. org / 10.1046 / j. 1439 - 0469.2003.00202. x" type="journal article">
|
||
Sierwald
|
||
<emphasis id="5DA27411BC447E28FDDF8EDB2F4552B2" box="[535,594,1925,1950]" italics="true" pageId="5" pageNumber="579">et al.</emphasis>
|
||
(2003)
|
||
</bibRefCitation>
|
||
suggested that the order
|
||
<taxonomicName id="A8D6D380BC447E28FC058ED8290752B2" authorityName="Brandt" authorityYear="1833" box="[973,1040,1925,1950]" class="Diplopoda" kingdom="Animalia" order="Julida" pageId="5" pageNumber="579" phylum="Arthropoda" rank="order">Julida</taxonomicName>
|
||
is closer to the order
|
||
<taxonomicName id="A8D6D380BC447E28FADA8ED8288F52B2" box="[1298,1432,1925,1950]" class="Diplopoda" kingdom="Animalia" order="Spirobolida" pageId="5" pageNumber="579" phylum="Arthropoda" rank="order">Spirobolida</taxonomicName>
|
||
.
|
||
<bibRefCitation id="0B47D5F2BC447E28FF5F8EF72C6B52EE" box="[151,380,1961,1986]" pageId="5" pageNumber="579" refString="Woo, H. J., Lee, Y. S., Park, S. J., Lim, J. T., Jang, K. H., Choi, E. H., Choi, Y. G. & Hwang, U. W. (2007) Complete mitochondrial genome of a troglobite millipede Antrokoreana gracilipes (Diplopoda, Juliformia, Julida), and juliformian phylogeny. Molecules and Cells, 23 (2), 182 - 191." type="journal article">
|
||
Woo
|
||
<emphasis id="5DA27411BC447E28FF158EF72C3752EE" box="[221,288,1961,1986]" italics="true" pageId="5" pageNumber="579">et al.</emphasis>
|
||
(2007)
|
||
</bibRefCitation>
|
||
suggested a close relationship between
|
||
<taxonomicName id="A8D6D380BC447E28FCB58EF4291752EE" box="[893,1024,1961,1986]" class="Diplopoda" kingdom="Animalia" order="Spirobolida" pageId="5" pageNumber="579" phylum="Arthropoda" rank="order">Spirobolida</taxonomicName>
|
||
and
|
||
<taxonomicName id="A8D6D380BC447E28FB848EF429FE52EE" box="[1100,1257,1961,1986]" class="Diplopoda" kingdom="Animalia" order="Spirostreptida" pageId="5" pageNumber="579" phylum="Arthropoda" rank="order">Spirostreptida</taxonomicName>
|
||
based on the mitochondrial gene arrangement pattern inferred from 13 mitochondrial protein-coding genes. In the present study, two julidan species,
|
||
<taxonomicName id="A8D6D380BC477E2BFE4B89C52F03559C" authorityName="Verhoeff" authorityYear="1938" box="[387,532,151,176]" class="Diplopoda" family="Nemasomatidae" genus="Antrokoreana" kingdom="Animalia" order="Julida" pageId="6" pageNumber="580" phylum="Arthropoda" rank="species" species="gracilipes">
|
||
<emphasis id="5DA27411BC477E2BFE4B89C52F03559C" box="[387,532,151,176]" italics="true" pageId="6" pageNumber="580">A. gracilipes</emphasis>
|
||
</taxonomicName>
|
||
and
|
||
<emphasis id="5DA27411BC477E2BFD8789C52FCA559C" box="[591,733,151,176]" italics="true" pageId="6" pageNumber="580">
|
||
<taxonomicName id="A8D6D380BC477E2BFD8789C52FCD559C" baseAuthorityName="Verhoeff" baseAuthorityYear="1937" box="[591,730,151,176]" class="Diplopoda" family="Julidae" genus="Anaulaciulus" kingdom="Animalia" order="Julida" pageId="6" pageNumber="580" phylum="Arthropoda" rank="species" species="koreanus">A. koreanus</taxonomicName>
|
||
,
|
||
</emphasis>
|
||
have the same gene arrangement pattern between
|
||
<emphasis id="5DA27411BC477E2BFAED89C5287D559C" box="[1317,1386,152,176]" italics="true" pageId="6" pageNumber="580">ND4L</emphasis>
|
||
and
|
||
<emphasis id="5DA27411BC477E2BFF5F89E22DDB55FB" box="[151,204,191,215]" italics="true" pageId="6" pageNumber="580">ND1</emphasis>
|
||
. The
|
||
<emphasis id="5DA27411BC477E2BFEDC89E22C7055E6" box="[276,359,188,214]" italics="true" pageId="6" pageNumber="580">tRNA Thr</emphasis>
|
||
was re-translocated into the position between
|
||
<emphasis id="5DA27411BC477E2BFC4489E22EC655FB" box="[908,977,191,215]" italics="true" pageId="6" pageNumber="580">ND4L</emphasis>
|
||
and
|
||
<emphasis id="5DA27411BC477E2BFBC789E2297555E6" box="[1039,1122,188,214]" italics="true" pageId="6" pageNumber="580">tRNA Pro</emphasis>
|
||
. On the contrary, both the species of the orders
|
||
<taxonomicName id="A8D6D380BC477E2BFE4189B82F1B55D2" box="[393,524,229,254]" class="Diplopoda" kingdom="Animalia" order="Spirobolida" pageId="6" pageNumber="580" phylum="Arthropoda" rank="order">Spirobolida</taxonomicName>
|
||
and
|
||
<taxonomicName id="A8D6D380BC477E2BFD8D89B82FF555D2" box="[581,738,229,254]" class="Diplopoda" kingdom="Animalia" order="Spirostreptida" pageId="6" pageNumber="580" phylum="Arthropoda" rank="order">Spirostreptida</taxonomicName>
|
||
have
|
||
<emphasis id="5DA27411BC477E2BFCEC89BB2E6255DC" box="[804,885,226,253]" italics="true" pageId="6" pageNumber="580">tRNA Thr</emphasis>
|
||
to be relocated to after
|
||
<emphasis id="5DA27411BC477E2BFB4C89BB29C355DC" box="[1156,1236,226,253]" italics="true" pageId="6" pageNumber="580">tRNA Ser</emphasis>
|
||
. This evidence is more likely to support the close relationship between
|
||
<taxonomicName id="A8D6D380BC477E2BFCE188542EBB540E" box="[809,940,265,290]" class="Diplopoda" kingdom="Animalia" order="Spirobolida" pageId="6" pageNumber="580" phylum="Arthropoda" rank="order">Spirobolida</taxonomicName>
|
||
and
|
||
<taxonomicName id="A8D6D380BC477E2BFC3988542999540E" box="[1009,1166,265,290]" class="Diplopoda" kingdom="Animalia" order="Spirostreptida" pageId="6" pageNumber="580" phylum="Arthropoda" rank="order">Spirostreptida</taxonomicName>
|
||
as
|
||
<bibRefCitation id="0B47D5F2BC477E2BFB098857288B540E" box="[1217,1436,265,290]" pageId="6" pageNumber="580" refString="Woo, H. J., Lee, Y. S., Park, S. J., Lim, J. T., Jang, K. H., Choi, E. H., Choi, Y. G. & Hwang, U. W. (2007) Complete mitochondrial genome of a troglobite millipede Antrokoreana gracilipes (Diplopoda, Juliformia, Julida), and juliformian phylogeny. Molecules and Cells, 23 (2), 182 - 191." type="journal article">
|
||
Woo
|
||
<emphasis id="5DA27411BC477E2BFACC88572854540E" box="[1284,1347,265,290]" italics="true" pageId="6" pageNumber="580">et al.</emphasis>
|
||
(2007)
|
||
</bibRefCitation>
|
||
suggested. Recently, the geographical distribution patterns of three orders
|
||
<taxonomicName id="A8D6D380BC477E2BFC2588702924546A" authorityName="Brandt" authorityYear="1833" box="[1005,1075,301,326]" class="Diplopoda" kingdom="Animalia" order="Julida" pageId="6" pageNumber="580" phylum="Arthropoda" rank="order">Julida</taxonomicName>
|
||
,
|
||
<taxonomicName id="A8D6D380BC477E2BFB89887029D3546A" box="[1089,1220,301,326]" class="Diplopoda" kingdom="Animalia" order="Spirobolida" pageId="6" pageNumber="580" phylum="Arthropoda" rank="order">Spirobolida</taxonomicName>
|
||
and
|
||
<taxonomicName id="A8D6D380BC477E2BFB378870288B546A" box="[1279,1436,301,326]" class="Diplopoda" kingdom="Animalia" order="Spirostreptida" pageId="6" pageNumber="580" phylum="Arthropoda" rank="order">Spirostreptida</taxonomicName>
|
||
were explored (
|
||
<bibRefCitation id="0B47D5F2BC477E2BFE84880C2F9A5446" author="Shelley" box="[332,653,337,362]" pageId="6" pageNumber="580" refString="Shelley, R. M. & Golovatch, S. I. (2011) Atlas of Myriapod Biogeography. I. Indigenous Ordinal and Supra-Ordinal Distributions in the Diplopoda: Perspectives on Taxon Origins and Ages, and a Hypothesis on the Origin and Early Evolution of the Class. Insecta Mundi, 0 158, 1 - 134." type="journal article" year="2011">Shelley & Golovatch, 2011</bibRefCitation>
|
||
), which coincidently supported the closer relationship of the orders
|
||
<taxonomicName id="A8D6D380BC477E2BFF5F88282C0D54A2" box="[151,282,373,398]" class="Diplopoda" kingdom="Animalia" order="Spirobolida" pageId="6" pageNumber="580" phylum="Arthropoda" rank="order">Spirobolida</taxonomicName>
|
||
and
|
||
<taxonomicName id="A8D6D380BC477E2BFE9888282CFA54A2" box="[336,493,373,398]" class="Diplopoda" kingdom="Animalia" order="Spirostreptida" pageId="6" pageNumber="580" phylum="Arthropoda" rank="order">Spirostreptida</taxonomicName>
|
||
separate from the order
|
||
<taxonomicName id="A8D6D380BC477E2BFD3788282E5154A2" authorityName="Brandt" authorityYear="1833" box="[767,838,373,398]" class="Diplopoda" kingdom="Animalia" order="Julida" pageId="6" pageNumber="580" phylum="Arthropoda" rank="order">Julida</taxonomicName>
|
||
.
|
||
</paragraph>
|
||
<caption id="3BA9F88BBC477E2BFF5F8F202C28539E" httpUri="https://zenodo.org/record/1008872/files/figure.png" pageId="6" pageNumber="580" targetBox="[340,1248,457,1639]" targetPageId="6">
|
||
<paragraph id="6F69A803BC477E2BFF5F8F202C28539E" blockId="6.[151,1436,1661,1714]" pageId="6" pageNumber="580">
|
||
<emphasis id="5DA27411BC477E2BFF5F8F202C0553BF" bold="true" box="[151,274,1661,1683]" pageId="6" pageNumber="580">FIGURE 3.</emphasis>
|
||
Putative secondary structures of the 22 tRNAs observed from the mitochondrial genome of
|
||
<taxonomicName id="A8D6D380BC477E2BFB7C8F202C28539E" authority="(Verhoeff, 1937)" authorityName="Verhoeff" authorityYear="1937" baseAuthorityName="Verhoeff" baseAuthorityYear="1937" class="Diplopoda" family="Julidae" genus="Anaulaciulus" kingdom="Animalia" order="Julida" pageId="6" pageNumber="580" phylum="Arthropoda" rank="species" species="koreanus">
|
||
<emphasis id="5DA27411BC477E2BFB7C8F20288B53BF" box="[1204,1436,1661,1683]" italics="true" pageId="6" pageNumber="580">Anaulaciulus koreanus</emphasis>
|
||
(Verhoeff, 1937)
|
||
</taxonomicName>
|
||
</paragraph>
|
||
</caption>
|
||
<subSection id="0659B1E8BC477E2AFF5F8E5E297A540E" lastPageId="7" lastPageNumber="581" pageId="6" pageNumber="580" type="multiple">
|
||
<paragraph id="6F69A803BC477E2BFF5F8E5E2C345231" blockId="6.[151,291,1795,1821]" box="[151,291,1795,1821]" pageId="6" pageNumber="580">
|
||
<heading id="34211F6FBC477E2BFF5F8E5E2C345231" bold="true" box="[151,291,1795,1821]" fontSize="11" level="1" pageId="6" pageNumber="580" reason="1">
|
||
<emphasis id="5DA27411BC477E2BFF5F8E5E2C345231" bold="true" box="[151,291,1795,1821]" pageId="6" pageNumber="580">Conclusion</emphasis>
|
||
</heading>
|
||
</paragraph>
|
||
<paragraph id="6F69A803BC477E2AFF5F8E14297A540E" blockId="6.[151,1436,1865,2001]" lastBlockId="7.[151,1436,151,290]" lastPageId="7" lastPageNumber="581" pageId="6" pageNumber="580">
|
||
The complete mitochondrial genome of a julid
|
||
<taxonomicName id="A8D6D380BC477E2BFD6F8E172EFB524E" authority="(Verhoeff, 1937)" authorityName="Verhoeff" authorityYear="1937" baseAuthorityName="Verhoeff" baseAuthorityYear="1937" box="[679,1004,1865,1890]" class="Diplopoda" family="Julidae" genus="Anaulaciulus" kingdom="Animalia" order="Julida" pageId="6" pageNumber="580" phylum="Arthropoda" rank="species" species="koreanus">
|
||
<emphasis id="5DA27411BC477E2BFD6F8E172E3B524E" box="[679,812,1865,1890]" italics="true" pageId="6" pageNumber="580">A. koreanus</emphasis>
|
||
(
|
||
<bibRefCitation id="0B47D5F2BC477E2BFCF28E142EF3524E" author="Verhoeff" box="[826,996,1865,1890]" pageId="6" pageNumber="580" refString="Verhoeff, K. W. (1937) Zur Kenntnis ostasiatischer Diplopoden. II. Zoologischer Anzeiger, 119 (1 / 2), 33 - 40." type="journal article" year="1937">Verhoeff, 1937</bibRefCitation>
|
||
)
|
||
</taxonomicName>
|
||
is 14,916 bp in length, and consists of 13 protein coding genes, 22 transfer RNAs, two ribosomal RNAs (12S and 16S rRNAs) and a large non-coding region (590 bp). Its genome size is within the general size range of other known diplopod species, and the A+T content is 75.1%. In the two julidan species
|
||
<taxonomicName id="A8D6D380BC477E2BFD638EE42E2952FD" authorityName="Verhoeff" authorityYear="1938" box="[683,830,1976,2001]" class="Diplopoda" family="Nemasomatidae" genus="Antrokoreana" kingdom="Animalia" order="Julida" pageId="6" pageNumber="580" phylum="Arthropoda" rank="species" species="gracilipes">
|
||
<emphasis id="5DA27411BC477E2BFD638EE42E2952FD" box="[683,830,1976,2001]" italics="true" pageId="6" pageNumber="580">A. gracilipes</emphasis>
|
||
</taxonomicName>
|
||
and
|
||
<taxonomicName id="A8D6D380BC477E2BFCB68EE4291F52FD" baseAuthorityName="Verhoeff" baseAuthorityYear="1937" box="[894,1032,1976,2001]" class="Diplopoda" family="Julidae" genus="Anaulaciulus" kingdom="Animalia" order="Julida" pageId="6" pageNumber="580" phylum="Arthropoda" rank="species" species="koreanus">
|
||
<emphasis id="5DA27411BC477E2BFCB68EE4291F52FD" box="[894,1032,1976,2001]" italics="true" pageId="6" pageNumber="580">A. koreanus</emphasis>
|
||
</taxonomicName>
|
||
,
|
||
<emphasis id="5DA27411BC477E2BFBD28EE4297B52EF" box="[1050,1132,1973,2000]" italics="true" pageId="6" pageNumber="580">tRNA Thr</emphasis>
|
||
was translocated into the position between
|
||
<emphasis id="5DA27411BC467E2AFE9789C62CB4559F" box="[351,419,155,179]" italics="true" pageId="7" pageNumber="581">ND4L</emphasis>
|
||
and
|
||
<emphasis id="5DA27411BC467E2AFE1489C62F385589" box="[476,559,151,178]" italics="true" pageId="7" pageNumber="581">tRNA Pro</emphasis>
|
||
, whereas the spirobolid and spirostreptid species have
|
||
<emphasis id="5DA27411BC467E2AFB5689C629E75589" box="[1182,1264,151,178]" italics="true" pageId="7" pageNumber="581">tRNA Thr</emphasis>
|
||
to be relocated to after
|
||
<emphasis id="5DA27411BC467E2AFF39899F2C5755E0" box="[241,320,190,217]" italics="true" pageId="7" pageNumber="581">tRNA Ser</emphasis>
|
||
. The results may support the close relationship between
|
||
<taxonomicName id="A8D6D380BC467E2AFC02899C295A55F6" box="[970,1101,193,218]" class="Diplopoda" kingdom="Animalia" order="Spirobolida" pageId="7" pageNumber="581" phylum="Arthropoda" rank="order">Spirobolida</taxonomicName>
|
||
and
|
||
<taxonomicName id="A8D6D380BC467E2AFB4E899C283455F6" box="[1158,1315,193,218]" class="Diplopoda" kingdom="Animalia" order="Spirostreptida" pageId="7" pageNumber="581" phylum="Arthropoda" rank="order">Spirostreptida</taxonomicName>
|
||
as
|
||
<bibRefCitation id="0B47D5F2BC467E2AFA83899F2C1F55D2" pageId="7" pageNumber="581" refString="Woo, H. J., Lee, Y. S., Park, S. J., Lim, J. T., Jang, K. H., Choi, E. H., Choi, Y. G. & Hwang, U. W. (2007) Complete mitochondrial genome of a troglobite millipede Antrokoreana gracilipes (Diplopoda, Juliformia, Julida), and juliformian phylogeny. Molecules and Cells, 23 (2), 182 - 191." type="journal article">
|
||
Woo
|
||
<emphasis id="5DA27411BC467E2AFA40899F2DA355D2" italics="true" pageId="7" pageNumber="581">et al.</emphasis>
|
||
(2007)
|
||
</bibRefCitation>
|
||
suggested. Additional millipede mitochondrial genomes will be helpful for assembling a database of mitochondrial gene arrangement patterns to be used for informing millipede phylogeny.
|
||
</paragraph>
|
||
</subSection>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |