139 lines
13 KiB
XML
139 lines
13 KiB
XML
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<mods:title id="DE21914CCA1C040F5B88AA83E3B32E3B">DNA barcode identification of lichen-forming fungal species in the Rhizoplaca melanophthalma species-complex (Lecanorales, Lecanoraceae), including five new species</mods:title>
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<mods:namePart id="95727110C89D4DD977F6B0C868C074BE">Leavitt, Steven D.</mods:namePart>
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<mods:namePart id="05923FA6F7615A1E42AA297AB4C2B7DA">Fernandez-Mendoza, Fernando</mods:namePart>
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<mods:namePart id="C80D7568A7DF3DF38F2F668C7D92333F">Perez-Ortega, Sergio</mods:namePart>
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<mods:namePart id="EE0BA6E2CAE327467099D0EC7C6B094F">Sohrabi, Mohammad</mods:namePart>
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<mods:namePart id="E34291E079D319F2199C7C37094977DF">Divakar, Pradeep K.</mods:namePart>
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<mods:namePart id="B1E4777448EE41E12D9CD7580F4DF1E7">Lumbsch, H. Thorsten</mods:namePart>
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<mods:namePart id="27984302E2925A2102BCFA3ADA219E45">Clair, Larry L. St.</mods:namePart>
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<mods:title id="5B67FE4D6B7AA8FE54F410703C58BB72">MycoKeys</mods:title>
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<mods:date id="81C4BD2F07ED19E900EEA4A2AEBF3BD4">2013</mods:date>
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<mods:number id="14AE12793004111DEA2260DC8ECE683D">7</mods:number>
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<mods:start id="200BC3A7608409BCB6EDAA6362BB8D35">1</mods:start>
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<mods:end id="C7C22E08EC12B20665CEE805A629A28E">22</mods:end>
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<mods:url id="C1C79597F5E8D7F5BDAD39BFEEE23832">http://dx.doi.org/10.3897/mycokeys.7.4508</mods:url>
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<mods:classification id="E4DD8EDEE8BC6189C9BAA7872F3CAD33">journal article</mods:classification>
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<mods:identifier id="07E4C4F6F825886F4FF534BC80BF9E68" type="DOI">http://dx.doi.org/10.3897/mycokeys.7.4508</mods:identifier>
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<mods:identifier id="3773E84E7221BF1595BCCD72F2B1C4F9" type="Pensoft-Pub">1314-4049-7-1</mods:identifier>
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<treatment id="03D2C8B65E06CD8921CE29811A6AC3DD" ID-GBIF-Taxon="152023595" LSID="urn:lsid:plazi:treatment:03D2C8B65E06CD8921CE29811A6AC3DD" httpUri="http://treatment.plazi.org/id/03D2C8B65E06CD8921CE29811A6AC3DD" lastPageNumber="12" pageId="11" pageNumber="12" scope_family="Lecanoraceae" scope_order="Lecanorales">
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<subSubSection id="C177745DE05CBEB936E6AE879B781C87" pageId="11" pageNumber="12" type="nomenclature">
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<paragraph id="A3B42695DC13CC06445E5DD8FE4F467A" pageId="11" pageNumber="12">
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<taxonomicName id="2BCB41B3D064C8E45ED3AB5C523262C0" ID-CoL="4SD4K" LSID="MycoBank no. MB 803479" authority="S. Leavitt, F. Fernandez-Mendoza, Lumbsch, Sohrabi & L. St. Clair" class="Lecanoromycetes" family="Lecanoraceae" genus="Rhizoplaca" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Rhizoplaca shushanii" order="Lecanorales" pageId="11" pageNumber="12" phylum="Ascomycota" rank="species" species="shushanii">
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Rhizoplaca shushanii S. Leavitt, F.
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<normalizedToken id="167EC6586C412656B4B61D6BE89F0418" originalValue="Fernández-Mendoza">Fernandez-Mendoza</normalizedToken>
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, Lumbsch, Sohrabi & L. St. Clair
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</taxonomicName>
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<taxonomicNameLabel id="511EA1AB4B7027E56F8EEEEBD99379C2" pageId="11" pageNumber="12">sp. nov.</taxonomicNameLabel>
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</paragraph>
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</subSubSection>
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<subSubSection id="1AB2CD53C5324047B8E541E83E2FC2BA" pageId="11" pageNumber="12" type="type">
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<paragraph id="AF43CCBEC10DDF32FA08684C8C866F33" pageId="11" pageNumber="12">Type.</paragraph>
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<paragraph id="4F052F7897182627259A4CCF6C7AF9AA" pageId="11" pageNumber="12">
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USA, Utah, Wayne County, Thousand Lakes Mountain, vicinity of 'Flat
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<normalizedToken id="B0CDFFF942AF68EDBF00E32D6D1D9E2C" originalValue="Top’">Top'</normalizedToken>
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, near summit,
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<geoCoordinate id="643E0E5FC66B99484C6775877E98A778" direction="north" orientation="latitude" precision="5" value="38.4366">38.4366°N</geoCoordinate>
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,
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<geoCoordinate id="73C32985FD27CC7016EE7C16C670C614" direction="west" orientation="longitude" precision="5" value="-111.4677">111.4677°W</geoCoordinate>
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, on basalt, 3270 m alt., October 1997, Lyndon D. Porter BRY-C55061 (holotype BRY).
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</paragraph>
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</subSubSection>
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<subSubSection id="B2E484D5519FD0DE3145234504EEAF55" pageId="11" pageNumber="12" type="description">
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<paragraph id="9F26B661F665D33ADAA99C218060505E" pageId="11" pageNumber="12">Description.</paragraph>
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<paragraph id="5EFBEC96D4D2EB36A95CD1CA71A9BA06" pageId="11" pageNumber="12">
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Morphologically similar to
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<taxonomicName id="4C965B679BBDE112B6E58D04F8D7DE84" class="Lecanoromycetes" family="Lecanoraceae" genus="Rhizoplaca" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Rhizoplaca melanophthalma" order="Lecanorales" pageId="11" pageNumber="12" phylum="Ascomycota" rank="species" species="melanophthalma">Rhizoplaca melanophthalma</taxonomicName>
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sensu stricto, but consists of specimens recovered within 'clade
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<normalizedToken id="47C9020530FF9DC638A0C12F0AB2A0BD" originalValue="III’">III'</normalizedToken>
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in
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<bibRefCitation id="816E8B6E289013CF1BB15A4EAB255BA9" author="Leavitt, SD" journalOrPublisher="Molecular Phylogenetics and Evolution" pageId="16" pageNumber="17" pagination="587 - 602" title="Complex patterns of speciation in cosmopolitan '' rock posy' ' lichens - Discovering and delimiting cryptic fungal species in the lichen-forming Rhizoplaca melanophthalma species-complex (Lecanoraceae, Ascomycota)." url="10.1016/j.ympev.2011.03.020" volume="59" year="2011 a">Leavitt et al. (2011a)</bibRefCitation>
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, which is supported as a lineage distinct from all other populations according to coalescent-based genetic analysis of multiple genetic loci. The mean genetic distances among ITS haplotypes was estimated to be 0.001
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<normalizedToken id="C4B1C1DF8E7280A854DE2C9C16030727" originalValue="±">+/-</normalizedToken>
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0.002.
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</paragraph>
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<paragraph id="C8A090F77C6E850D2E4DCA5188A17CBA" pageId="11" pageNumber="12">
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<normalizedToken id="202E1F5CCEB3C99BAA86D417D153BC31" originalValue="Chemistry–">Chemistry-</normalizedToken>
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Usnic (major), psoromic (major), subpsoromic (minor), and 2'-O-demethylsubpsoromic (minor or trace) acids; usually with constipatic (minor) and 2'-O-demethylpsoromic (minor) acids; and occasionally with dehydroconstipatic (minor) and dehydroprotocetraric (minor) acids.
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</paragraph>
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</subSubSection>
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<subSubSection id="2C4459188790C8314819F6ECDA7EB628" pageId="11" pageNumber="12" type="reference phylogeny">
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<paragraph id="C2B5B9EBBFD051E6546899CE8F1BB817" pageId="11" pageNumber="12">Reference phylogeny.</paragraph>
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<paragraph id="A0D032CAB76DE4EFAF1941A4E8C174BF" pageId="11" pageNumber="12">
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<bibRefCitation id="162589B52902194E17A272E19413B796" author="Leavitt, SD" journalOrPublisher="Molecular Phylogenetics and Evolution" pageId="16" pageNumber="17" pagination="587 - 602" title="Complex patterns of speciation in cosmopolitan '' rock posy' ' lichens - Discovering and delimiting cryptic fungal species in the lichen-forming Rhizoplaca melanophthalma species-complex (Lecanoraceae, Ascomycota)." url="10.1016/j.ympev.2011.03.020" volume="59" year="2011 a">Leavitt et al. 2011a</bibRefCitation>
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(fig. 5, 'clade
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<normalizedToken id="E81A88B7BC050BDD253C600893E79D1C" originalValue="III’">III'</normalizedToken>
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).
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</paragraph>
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</subSubSection>
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<subSubSection id="981DB2B32DB03ABCBD90C1137B322A5B" pageId="11" pageNumber="12" type="reference sequences">
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<paragraph id="010FAE5E927BFB80AB782DCEEA96E4ED" pageId="11" pageNumber="12">Reference sequences.</paragraph>
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<paragraph id="08554C7281DBB88615605A2FDC98E4F4" pageId="11" pageNumber="12">GenBank Nos. HM577282 (ITS), HM577058 (IGS), HM577187 (group I intron), HM577416 (MCM 7), and HM576927 (β-tubulin).</paragraph>
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<paragraph id="1845FF7DF6894BE14F9B57EC80B60A69" pageId="11" pageNumber="12">Phylogenetic notes: A monophyletic lineage in both concatenated multilocus gene tree with strong statistical support (ML bootstrap = 100%; posterior probability 1.0), and with strong statistical support in the ITS gene topology (ML bootstrap = 100%, this study); and high speciation probability inferred from multiple loci (BPP speciation probability = 1.0).</paragraph>
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</subSubSection>
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<subSubSection id="E72E2E95AC71AA8F731726FF538575E4" pageId="11" pageNumber="12" type="ecology and distribution">
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<paragraph id="783AB23184E6CA9AF4202CE25C5A65C8" pageId="11" pageNumber="12">Ecology and distribution.</paragraph>
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<paragraph id="6952690C93008E8BB09B325A65A4EF42" pageId="11" pageNumber="12">Found growing only on sun-exposed basalt boulders in subalpine meadows in southwestern USA. Currently known only from subalpine habitats on the Aquarius Plateau in southern Utah, USA.</paragraph>
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</subSubSection>
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<subSubSection id="B2EA121E4539B32E3AABB4E145023013" pageId="11" pageNumber="12" type="etymology">
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<paragraph id="3ECAD8AB612FFCB364D4989987FFD63E" pageId="11" pageNumber="12">Etymology.</paragraph>
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<paragraph id="FAC63F63C6A72016549187DC1A931A77" pageId="11" pageNumber="12">The new taxon is named in honor ofthe late Dr. Sam Shushan, a pioneer in western North American lichenology.</paragraph>
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</subSubSection>
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<subSubSection id="4C69579C2EC125E6A0548D58BC4A8A79" pageId="11" pageNumber="12" type="specimens examined">
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<paragraph id="0A9B71975C59435B3E0AB5C55924401F" pageId="11" pageNumber="12">Specimens examined.</paragraph>
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<paragraph id="6232B2DF72A666C04703C62C9B2E6260" pageId="11" pageNumber="12">See supplementary file 1.</paragraph>
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</subSubSection>
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</treatment>
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</document> |