121 lines
14 KiB
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121 lines
14 KiB
XML
<document id="444FAADA94B26301218CDB8CA40D02E6" ID-DOI="10.11646/phytotaxa.619.2.1" ID-GBIF-Dataset="150349a6-c660-4fef-a785-96301d709909" ID-ISSN="1179-3163" ID-Zenodo-Dep="8425855" IM.bibliography_approvedBy="juliana" IM.illustrations_approvedBy="juliana" IM.materialsCitations_approvedBy="juliana" IM.metadata_approvedBy="juliana" IM.tables_approvedBy="juliana" IM.taxonomicNames_approvedBy="juliana" IM.treatments_approvedBy="juliana" checkinTime="1696938259094" checkinUser="plazi" docAuthor="Thambugala, Kasun M., Karunarathna, Samantha C., Zhao, Chang-Lin, Elgorban, Abdallah M., Tennakoon, Danushka S. & Konara, Ushari A." docDate="2023" docId="E12C87BDE75E3E55FF47F862FB39FE5E" docLanguage="en" docName="phytotaxa.619.2.1.pdf" docOrigin="Phytotaxa 619 (2)" docSource="http://dx.doi.org/10.11646/phytotaxa.619.2.1" docStyle="DocumentStyle:96748F8F1B6C902996E134952A3A36B9.7:Phytotaxa.2014-.journal_article" docStyleId="96748F8F1B6C902996E134952A3A36B9" docStyleName="Phytotaxa.2014-.journal_article" docStyleVersion="7" docTitle="Perenniporiopsis C. L. Zhao 2017" docType="treatment" docVersion="2" lastPageNumber="129" masterDocId="1D15FFC5E75B3E53FFCFFF9FFFB3FFCE" masterDocTitle="Perenniporiopsis srijayewardenepurana sp. nov. and validation of Pyrrhoderma nigrum in Sri Lanka" masterLastPageNumber="136" masterPageNumber="123" pageNumber="128" updateTime="1697042018318" updateUser="ExternalLinkService" zenodo-license-figures="UNSPECIFIED" zenodo-license-treatments="UNSPECIFIED">
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<mods:title id="C0D3B9B640705972B6BBFC5CFBC0B54C">Perenniporiopsis srijayewardenepurana sp. nov. and validation of Pyrrhoderma nigrum in Sri Lanka</mods:title>
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<mods:namePart id="4F163A8716DEA99EF3B9BE42D64A0C45">Thambugala, Kasun M.</mods:namePart>
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<mods:affiliation id="A851A1691691C8831FDA61D6344E38FE">Genetics and Molecular Biology Unit, Faculty of Applied Sciences, University of Sri Jayewardenepura, Nugegoda 10250, Sri Lanka & Center for Biotechnology, Department of Zoology, University of Sri Jayewardenepura, Nugegoda, Sri Lanka</mods:affiliation>
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<mods:nameIdentifier id="210881E465784DD2295AEE7DC0F81FDF" type="email">kasun@sci.sjp.ac.lk</mods:nameIdentifier>
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<mods:namePart id="DFC9B9282992251950AFA9FB33A3A211">Karunarathna, Samantha C.</mods:namePart>
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<mods:nameIdentifier id="79C726ADA6A414F443B11A0257DEC0E7" type="ORCID">0000-0001-7080-0781</mods:nameIdentifier>
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<mods:affiliation id="0DCF71FD6D1BA692585CAEE9B69D5691">Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China & National Institute of Fundamental Studies, Hantane Road, Kandy, Sri Lanka & samanthakarunarathna @ gmail. com; https: // orcid. org / 0000 - 0001 - 7080 - 0781</mods:affiliation>
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<mods:nameIdentifier id="254A1C9B6EC91558027FAF6C51E665E9" type="email">samanthakarunarathna@gmail.com</mods:nameIdentifier>
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<mods:namePart id="E038102E1352DB5D57219D7E21E7791A">Zhao, Chang-Lin</mods:namePart>
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<mods:affiliation id="CA8F08D8CF0B883A1B7A50996043CB9D">Key Laboratory of Forest Disaster Warning and Control in Universities of Yunnan Province, Southwest Forestry University, Kunming 650224, P. R. China & fungichanglinz @ 163. com; https: // orcid. org / 0000 - 0002 - 1395 - 591 X</mods:affiliation>
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<mods:nameIdentifier id="1B6CD489FDE1A7D673D4F9D2B37AFDCE" type="email">fungichanglinz@163.com</mods:nameIdentifier>
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<mods:namePart id="5BAF249889C5C9E8A4BC73CA1840E5C1">Elgorban, Abdallah M.</mods:namePart>
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<mods:affiliation id="B52C35B84B1B58E77F6061C5E34DE42B">Department of Botany and Microbiology, College of Science, King Saud University, P. O. 2455, Riyadh, 11451, Saudi Arabia & aelgorban @ ksu. edu. sa; https: // orcid. org / 0000 - 0003 - 3664 - 7853</mods:affiliation>
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<mods:nameIdentifier id="F34721C0F54660D7A3590BF5A4F92DE3" type="email">aelgorban@ksu.edu.sa</mods:nameIdentifier>
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<mods:namePart id="7958F47DE440CC0BB9B286B645AD21B6">Tennakoon, Danushka S.</mods:namePart>
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<mods:nameIdentifier id="C96B58448A32E15FC672DFB9C06BC73D" type="ORCID">0000-0003-2306-1255</mods:nameIdentifier>
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<mods:affiliation id="32D303AE56E58BC018C3D0B8A31C9CA1">Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand & Research Center of Microbial Diversity and Sustainable Utilization, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand kasun @ sci. sjp. ac. lk; https: // orcid. org / 0000 - 0002 - 6210 - 0504 & danushkasandaruwanatm @ gmail. com; https: // orcid. org / 0000 - 0003 - 2306 - 1255</mods:affiliation>
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<mods:nameIdentifier id="03D4E94C20731459B05074EA0DD58472" type="email">danushkasandaruwanatm@gmail.com</mods:nameIdentifier>
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<mods:namePart id="D88068ED1C76A638EC284F6B6AEE39F3">Konara, Ushari A.</mods:namePart>
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<mods:affiliation id="7736F3754AB2C3BEDBF8A9D9BB548F72">Genetics and Molecular Biology Unit, Faculty of Applied Sciences, University of Sri Jayewardenepura, Nugegoda 10250, Sri Lanka & usharikonaramck @ gmail. com; https: // orcid. org / 0009 - 0005 - 4767 - 4277</mods:affiliation>
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<mods:nameIdentifier id="83A757B402835EB47361CAAD14909992" type="email">usharikonaramck@gmail.com</mods:nameIdentifier>
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<mods:title id="0A59E5C9104CFACAFB9A3B4AB652913B">Phytotaxa</mods:title>
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<mods:date id="8A9EB2CC0B2AE5C5BBDAC20D8CAFDE27">2023</mods:date>
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<mods:number id="903B1B78E31D55D56D5926A8C6B2BF20">2023-10-06</mods:number>
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<mods:number id="8C8674DBBEBC4CC6ADB83426876AE9E7">619</mods:number>
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<mods:url id="2B525FDAA08696B24B91EA96C6C0092B">http://dx.doi.org/10.11646/phytotaxa.619.2.1</mods:url>
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<treatment id="E12C87BDE75E3E55FF47F862FB39FE5E" ID-DOI="http://doi.org/10.5281/zenodo.8432245" ID-Zenodo-Dep="8432245" LSID="urn:lsid:plazi:treatment:E12C87BDE75E3E55FF47F862FB39FE5E" httpUri="http://treatment.plazi.org/id/E12C87BDE75E3E55FF47F862FB39FE5E" lastPageId="6" lastPageNumber="129" pageId="5" pageNumber="128">
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<subSubSection id="219F6520E75E3E56FF47F862FEFBF7D8" box="[136,328,2045,2070]" pageId="5" pageNumber="128" type="nomenclature">
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<paragraph id="693A36ABE75E3E56FF47F862FEFBF7D8" blockId="5.[136,328,2045,2070]" box="[136,328,2045,2070]" pageId="5" pageNumber="128">
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<taxonomicName id="AE854D28E75E3E56FF47F862FEFBF7D8" ID-CoL="6L4P" ID-ENA="2048663" authorityName="C. L. Zhao" authorityYear="2017" box="[136,328,2045,2070]" class="Agaricomycetes" family="Polyporaceae" genus="Perenniporiopsis" kingdom="Fungi" order="Polyporales" pageId="5" pageNumber="128" phylum="Basidiomycota" rank="genus">
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<emphasis id="5BF1EAB9E75E3E56FF47F862FEFBF7D8" box="[136,328,2045,2070]" italics="true" pageId="5" pageNumber="128">Perenniporiopsis</emphasis>
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</taxonomicName>
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</paragraph>
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<subSubSection id="219F6520E75D3E55FF47FF01FB39FE5E" pageId="6" pageNumber="129" type="description">
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<paragraph id="693A36ABE75D3E55FF47FF01FB39FE5E" blockId="6.[136,1452,158,401]" pageId="6" pageNumber="129">
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The first phylogenetic analysis (
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<figureCitation id="F1BE2A2EE75D3E55FE36FF01FDEAFF76" box="[505,601,158,184]" captionStart="FIGURE 1" captionStartId="6.[136,229,1951,1973]" captionTargetBox="[256,1332,423,1920]" captionTargetId="figure-131@6.[256,1332,422,1924]" captionTargetPageId="6" captionText="FIGURE 1. The phylogram generated from the maximum likelihood analysis of combined ITS and LSU sequences from Perenniporiopsis and related taxa (Final likelihood value of -20718.599316). The tree is rooted with Stereum hirsutum (NBRC 6520) and Heterobasidion annosum (PFC 5252). The ex-type strains are indicated in bold, and the new species are indicated in red. Bootstrap support values ≥65% from the maximum likelihood (ML) and Bayesian posterior probabilities (PP) values ≥0.90 are given above the nodes." figureDoi="http://doi.org/10.5281/zenodo.8425859" httpUri="https://zenodo.org/record/8425859/files/figure.png" pageId="6" pageNumber="129">Figure 1</figureCitation>
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) included 77 taxa, which encompassed the sequences of two new strains. The tree was constructed using the combined ITS and LSU sequences, totalling 1,950 characters with gaps: 897 characters for ITS and 1,053 characters for LSU. The best scoring maximum likelihood tree (-20718.599316) is shown in
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<figureCitation id="F1BE2A2EE75D3E55FF66FE95FF5CFEEA" box="[169,239,266,292]" captionStart="FIGURE 1" captionStartId="6.[136,229,1951,1973]" captionTargetBox="[256,1332,423,1920]" captionTargetId="figure-131@6.[256,1332,422,1924]" captionTargetPageId="6" captionText="FIGURE 1. The phylogram generated from the maximum likelihood analysis of combined ITS and LSU sequences from Perenniporiopsis and related taxa (Final likelihood value of -20718.599316). The tree is rooted with Stereum hirsutum (NBRC 6520) and Heterobasidion annosum (PFC 5252). The ex-type strains are indicated in bold, and the new species are indicated in red. Bootstrap support values ≥65% from the maximum likelihood (ML) and Bayesian posterior probabilities (PP) values ≥0.90 are given above the nodes." figureDoi="http://doi.org/10.5281/zenodo.8425859" httpUri="https://zenodo.org/record/8425859/files/figure.png" pageId="6" pageNumber="129">Fig. 1</figureCitation>
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. Tree topologies of the ML and MP were consistent with the Bayesian analysis. The dataset represents
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<taxonomicName id="AE854D28E75D3E55FF47FEB0FEFBFE86" authorityName="C. L. Zhao" authorityYear="2017" box="[136,328,303,328]" class="Agaricomycetes" family="Polyporaceae" genus="Perenniporiopsis" kingdom="Fungi" order="Polyporales" pageId="6" pageNumber="129" phylum="Basidiomycota" rank="genus">
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<emphasis id="5BF1EAB9E75D3E55FF47FEB0FEFBFE86" box="[136,328,303,328]" italics="true" pageId="6" pageNumber="129">Perenniporiopsis</emphasis>
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</taxonomicName>
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and other related taxa, with
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<taxonomicName id="AE854D28E75D3E55FD55FEB0FCD0FE86" box="[666,867,302,329]" class="Agaricomycetes" family="Stereaceae" genus="Stereum" kingdom="Fungi" order="Russulales" pageId="6" pageNumber="129" phylum="Basidiomycota" rank="species" species="hirsutum">
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<emphasis id="5BF1EAB9E75D3E55FD55FEB0FCD0FE86" box="[666,867,302,329]" italics="true" pageId="6" pageNumber="129">Stereum hirsutum</emphasis>
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</taxonomicName>
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(NBRC 6520) and
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<taxonomicName id="AE854D28E75D3E55FB85FEB1FAD5FE86" box="[1098,1382,302,328]" class="Agaricomycetes" family="Bondarzewiaceae" genus="Heterobasidion" kingdom="Fungi" order="Russulales" pageId="6" pageNumber="129" phylum="Basidiomycota" rank="species" species="annosum">
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<emphasis id="5BF1EAB9E75D3E55FB85FEB1FAD5FE86" box="[1098,1382,302,328]" italics="true" pageId="6" pageNumber="129">Heterobasidion annosum</emphasis>
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</taxonomicName>
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(PFC 5252) as the outgroup taxa. The dataset comprised 1950 total characters, of which 1016 were constant, 704 variable characters were parsimony-informative, and 230 characters were parsimony-uninformative.
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</paragraph>
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</treatment>
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