173 lines
12 KiB
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173 lines
12 KiB
XML
<document ID-DOI="10.1099/ijsem.0.004945" ID-GBIF-Dataset="216b98f8-95b8-4abc-b748-191e0e84bd35" ID-ISSN="1466-5034" ID-PMC="PMC8513617" ID-PubMed="34379584" ID-Zenodo-Dep="6224170" checkinTime="1645466238162" checkinUser="felipe" docAuthor="Bird, Lina J., Kuenen, J. Gijs, Osburn, Magdalena R., Tomioka, Naotaka, Ishii, Shun’ichi, Barr, Casey, Nealson, Kenneth H. & Suzuki, Shino" docDate="2021" docId="03A8F76C93557428FC8FFC00FA17C00E" docLanguage="en" docName="IntJSystEvolMicrobiol.71.8.004945.pdf" docOrigin="International Journal of Systematic and Evolutionary Microbiology (004945) 71 (8)" docSource="http://dx.doi.org/10.1099/ijsem.0.004945" docStyle="DocumentStyle:C64F0A4F4C66F6FC2AD4ED89351C6242.2:IntJSystEvolMicrobiol.2017-.journal_article" docStyleId="C64F0A4F4C66F6FC2AD4ED89351C6242" docStyleName="IntJSystEvolMicrobiol.2017-.journal_article" docStyleVersion="2" docTitle="Serpentinimonas raichei Bird & Kuenen & Osburn & Tomioka & Ishii & Barr & Nealson & Suzuki 2021, SP. NOV." docType="treatment" docVersion="7" lastPageNumber="8" masterDocId="FF918F149352742FFFB3FFAEFFB6C655" masterDocTitle="Serpentinimonas gen. nov., Serpentinimonas raichei sp. nov., Serpentinimonas barnesii sp. nov. and Serpentinimonas maccroryi sp. nov., hyperalkaliphilic and facultative autotrophic bacteria isolated from terrestrial serpentinizing springs" masterLastPageNumber="10" masterPageNumber="1" pageNumber="8" updateTime="1668130833024" updateUser="ExternalLinkService">
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<mods:mods xmlns:mods="http://www.loc.gov/mods/v3">
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<mods:titleInfo>
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<mods:title>Serpentinimonas gen. nov., Serpentinimonas raichei sp. nov., Serpentinimonas barnesii sp. nov. and Serpentinimonas maccroryi sp. nov., hyperalkaliphilic and facultative autotrophic bacteria isolated from terrestrial serpentinizing springs</mods:title>
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</mods:titleInfo>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Bird, Lina J.</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Kuenen, J. Gijs</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Osburn, Magdalena R.</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Tomioka, Naotaka</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Ishii, Shun’ichi</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Barr, Casey</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Nealson, Kenneth H.</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Suzuki, Shino</mods:namePart>
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</mods:name>
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<mods:typeOfResource>text</mods:typeOfResource>
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<mods:relatedItem type="host">
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<mods:titleInfo>
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<mods:title>International Journal of Systematic and Evolutionary Microbiology</mods:title>
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</mods:titleInfo>
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<mods:part>
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<mods:date>2021</mods:date>
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<mods:detail type="series">
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<mods:title>004945</mods:title>
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</mods:detail>
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<mods:detail type="pubDate">
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<mods:number>2021-08-11</mods:number>
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</mods:detail>
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<mods:detail type="volume">
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<mods:number>71</mods:number>
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</mods:detail>
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<mods:detail type="issue">
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<mods:number>8</mods:number>
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</mods:detail>
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<mods:extent unit="page">
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<mods:start>1</mods:start>
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<mods:end>10</mods:end>
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</mods:extent>
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</mods:part>
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</mods:relatedItem>
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<mods:location>
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<mods:url>http://dx.doi.org/10.1099/ijsem.0.004945</mods:url>
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</mods:location>
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<mods:classification>journal article</mods:classification>
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<mods:identifier type="DOI">10.1099/ijsem.0.004945</mods:identifier>
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<mods:identifier type="GBIF-Dataset">216b98f8-95b8-4abc-b748-191e0e84bd35</mods:identifier>
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<mods:identifier type="ISSN">1466-5034</mods:identifier>
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<mods:identifier type="PMC">PMC8513617</mods:identifier>
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<mods:identifier type="PubMed">34379584</mods:identifier>
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<mods:identifier type="Zenodo-Dep">6224170</mods:identifier>
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</mods:mods>
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<treatment ID-DOI="http://doi.org/10.5281/zenodo.6314525" ID-GBIF-Taxon="193580168" ID-Zenodo-Dep="6314525" LSID="urn:lsid:plazi:treatment:03A8F76C93557428FC8FFC00FA17C00E" httpUri="http://treatment.plazi.org/id/03A8F76C93557428FC8FFC00FA17C00E" lastPageNumber="8" pageId="7" pageNumber="8">
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<subSubSection pageId="7" pageNumber="8" type="nomenclature">
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<paragraph blockId="7.[826,1467,942,1627]" pageId="7" pageNumber="8">
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<heading allCaps="true" bold="true" fontSize="12" level="2" pageId="7" pageNumber="8" reason="3">
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<emphasis bold="true" pageId="7" pageNumber="8">
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DESCRIPTION OF
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<taxonomicName authority="Bird & Kuenen & Osburn & Tomioka & Ishii & Barr & Nealson & Suzuki, 2021" authorityName="Bird & Kuenen & Osburn & Tomioka & Ishii & Barr & Nealson & Suzuki" authorityYear="2021" class="Gammaproteobacteria" family="Burkholderiaceae" genus="Serpentinimonas" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Burkholderiales" pageId="7" pageNumber="8" phylum="Proteobacteria" rank="species" species="raichei" status="sp. nov.">
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<emphasis bold="true" italics="true" pageId="7" pageNumber="8">SERPENTINIMONAS RAICHEI</emphasis>
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</taxonomicName>
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<taxonomicNameLabel box="[949,1065,979,1008]" pageId="7" pageNumber="8" rank="species">SP. NOV.</taxonomicNameLabel>
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</emphasis>
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</heading>
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</paragraph>
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</subSubSection>
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<subSubSection pageId="7" pageNumber="8" type="etymology">
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<paragraph blockId="7.[826,1467,942,1627]" pageId="7" pageNumber="8">
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<taxonomicName authorityName="Bird & Kuenen & Osburn & Tomioka & Ishii & Barr & Nealson & Suzuki" authorityYear="2021" box="[828,1077,1021,1045]" class="Gammaproteobacteria" family="Burkholderiaceae" genus="Serpentinimonas" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Burkholderiales" pageId="7" pageNumber="8" phylum="Proteobacteria" rank="species" species="raichei">
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<emphasis box="[828,1077,1021,1045]" italics="true" pageId="7" pageNumber="8">Serpentinimonas raichei</emphasis>
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</taxonomicName>
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(rai′ che.i. N.L. gen. n.
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<taxonomicName authorityName="Bird & Kuenen & Osburn & Tomioka & Ishii & Barr & Nealson & Suzuki" authorityYear="2021" box="[1311,1385,1021,1045]" class="Gammaproteobacteria" family="Burkholderiaceae" genus="Serpentinimonas" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Burkholderiales" pageId="7" pageNumber="8" phylum="Proteobacteria" rank="species" species="raichei">raichei</taxonomicName>
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, named after R. Raiche, one of the owners of The Cedars nature reserve).
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</paragraph>
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</subSubSection>
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<subSubSection pageId="7" pageNumber="8" type="description">
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<paragraph blockId="7.[826,1467,942,1627]" pageId="7" pageNumber="8">
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In addition to the characteristics given above in the genus description,
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<taxonomicName authorityName="Bird & Kuenen & Osburn & Tomioka & Ishii & Barr & Nealson & Suzuki" authorityYear="2021" box="[959,1052,1159,1183]" class="Gammaproteobacteria" family="Burkholderiaceae" genus="Serpentinimonas" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Burkholderiales" pageId="7" pageNumber="8" phylum="Proteobacteria" rank="species" species="raichei">
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<emphasis box="[959,1052,1159,1183]" italics="true" pageId="7" pageNumber="8">S. raichei</emphasis>
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</taxonomicName>
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has the characteristics described below. Growth occurs at 18–37 °C and pH 10.0–11.5 with optimal growth at 30°C and pH 11.0. NaCl ranges from
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<quantity box="[1337,1431,1220,1245]" metricMagnitude="-4" metricUnit="kg" metricValue="2.5" metricValueMax="5.0" metricValueMin="0.0" pageId="7" pageNumber="8" unit="g" value="0.25" valueMax="0.5" valueMin="0.0">0 to 0.5 g</quantity>
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<superScript attach="left" box="[1437,1460,1219,1244]" fontSize="6" pageId="7" pageNumber="8">l−1</superScript>
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. The DNA base composition of the
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<typeStatus box="[1198,1244,1251,1275]" pageId="7" pageNumber="8">type</typeStatus>
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strain is 66.6% G+C (determined from the genome). The strain grows autotrophically with hydrogen gas and calcium carbonate and heterotrophically on acetate, butyrate, lactate, pyruvate, ethanol, cyclohexane and fumarate under microaerophilic condition. The strain cannot utilize nitrate, sulphate, iron (III) hydroxide or iron (II/III) oxide as electron acceptors. The strain cannot ferment glucose. Major fatty acids are C
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<subScript attach="both" box="[1255,1281,1481,1495]" fontSize="6" pageId="7" pageNumber="8">16:1</subScript>
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ω7
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<emphasis box="[1312,1322,1466,1489]" italics="true" pageId="7" pageNumber="8">c</emphasis>
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and C
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<subScript attach="both" box="[1393,1419,1482,1496]" fontSize="6" pageId="7" pageNumber="8">18:1</subScript>
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ω7
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<emphasis box="[1450,1460,1466,1489]" italics="true" pageId="7" pageNumber="8">c</emphasis>
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. The respiratory quinone is ubiquinone.
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</paragraph>
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<caption ID-DOI="http://doi.org/10.5281/zenodo.6224184" ID-Zenodo-Dep="6224184" httpUri="https://zenodo.org/record/6224184/files/figure.png" pageId="7" pageNumber="8" startId="7.[121,152,1418,1437]" targetBox="[120,760,182,1392]" targetPageId="7">
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<paragraph blockId="7.[121,760,1417,1543]" pageId="7" pageNumber="8">
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<emphasis bold="true" box="[121,184,1418,1437]" pageId="7" pageNumber="8">Fig. 3.</emphasis>
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Microscopic observation of strain A1
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<superScript attach="none" box="[556,563,1417,1428]" fontSize="5" pageId="7" pageNumber="8">T</superScript>
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. (a) Phase contrast microscopy image of strain A1
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<superScript attach="left" box="[393,400,1443,1454]" fontSize="5" pageId="7" pageNumber="8">T</superScript>
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grown on acetate and oxygen.The three strains are visually indistinguishable. (b) SEM image of strain A1
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<superScript attach="left" box="[723,730,1470,1481]" fontSize="5" pageId="7" pageNumber="8">T</superScript>
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on carbon filter paper. Morphologies are indistinguishable for the three strains. (c) TEM image of strain A1
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<superScript attach="left" box="[430,437,1523,1534]" fontSize="5" pageId="7" pageNumber="8">T</superScript>
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grown on acetate with oxygen.
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</paragraph>
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</caption>
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<paragraph blockId="7.[826,1467,942,1627]" pageId="7" pageNumber="8">
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<materialsCitation ID-GBIF-Occurrence="3472775302" collectionCode="A" country="United States of America" location="The Cedars" pageId="7" pageNumber="8" specimenCode="A1T" specimenCount="1" stateProvince="California" typeStatus="holotype">
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The
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<typeStatus box="[874,920,1542,1566]" pageId="7" pageNumber="8">type</typeStatus>
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strain,
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<specimenCode box="[1001,1040,1541,1566]" pageId="7" pageNumber="8">
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A1
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<superScript attach="none" box="[1032,1040,1541,1555]" fontSize="6" pageId="7" pageNumber="8">T</superScript>
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</specimenCode>
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, (=NBRC 111848
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<superScript attach="none" box="[1231,1241,1541,1555]" fontSize="6" pageId="7" pageNumber="8">T</superScript>
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=DSM 103917
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<superScript attach="none" box="[1395,1405,1541,1555]" fontSize="6" pageId="7" pageNumber="8">T</superScript>
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), was isolated from a highly alkaline serpentinizing spring (Barnes Spring 1) in
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<location LSID="urn:lsid:plazi:treatment:03A8F76C93557428FC8FFC00FA17C00E:8EDE10A193557428FC73F9EDFB8EC00E" box="[960,1080,1603,1627]" country="United States of America" name="The Cedars" pageId="7" pageNumber="8" stateProvince="California">The Cedars</location>
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located in north
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<collectingRegion box="[1263,1373,1603,1627]" country="United States of America" name="California" pageId="7" pageNumber="8">California</collectingRegion>
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,
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<collectingCountry box="[1384,1438,1603,1627]" name="United States of America" pageId="7" pageNumber="8">USA</collectingCountry>
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.
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</materialsCitation>
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</paragraph>
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</subSubSection>
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</treatment>
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</document> |