175 lines
15 KiB
XML
175 lines
15 KiB
XML
<document id="7A96FF64B35DAE977C253B7B15A49E8F" ID-DOI="10.12651/JSR.2019.8.1.097" ID-ISSN="2713-8615" ID-Zenodo-Dep="8120476" IM.bibliography_approvedBy="felipe" IM.illustrations_approvedBy="felipe" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_requiresApprovalFor="GgImagineBatch" IM.taxonomicNames_approvedBy="felipe" IM.treatments_approvedBy="felipe" checkinTime="1688645522691" checkinUser="felipe" docAuthor="Kim, Mi-Sun, Jeong, Seong-Hwa, Kang, Joo-Won, Kim, Seung-Bum, Cho, Jang-Cheon, Cha, Chang-Jun, Im, Wan-Taek, Bae, Jin-Woo, Lee, Soon-Dong, Kim, Won-Yong, Kim, Myung-Kyum & Seong, Chi-Nam" docDate="2019" docId="2A0487B6CE41FF91FCCBFA8EFDB4FAB5" docLanguage="en" docName="JSpeciesRes.8.1.97-108.pdf" docOrigin="Journal of Species Research 8 (1)" docStyle="DocumentStyle:4D398BFF45FF8CA9E08F546BB06AE372.1:JSpeciesRes.2012-.journal_article" docStyleId="4D398BFF45FF8CA9E08F546BB06AE372" docStyleName="JSpeciesRes.2012-.journal_article" docStyleVersion="1" docTitle="Dietzia maris HC" docType="treatment" docVersion="2" lastPageNumber="103" masterDocId="D63DFFCECE45FF97FF8CFFE0FFBDF875" masterDocTitle="Unrecorded prokaryotic species belonging to the class Actinobacteria in Korea" masterLastPageNumber="108" masterPageNumber="97" pageNumber="101" updateTime="1688645832248" updateUser="ExternalLinkService" zenodo-license-document="CC-BY-4.0">
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<mods:titleInfo id="432EBE8DE7C41FC7147300AD245A5F94">
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<mods:title id="808875CF42702BA424FD53F4FB8F9B81">Unrecorded prokaryotic species belonging to the class Actinobacteria in Korea</mods:title>
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<mods:name id="C3C1BB4A9D46E31CAAB2AE639D5E3448" type="personal">
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<mods:namePart id="67FDA5044630CD032F2EA333E5317C4E">Kim, Mi-Sun</mods:namePart>
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<mods:affiliation id="DC486D123D9392FEF241E295BB30BDA1">Department of Biology, Sunchon National University, Suncheon 57922, Republic of Korea</mods:affiliation>
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<mods:namePart id="A5B1A3D7CA2065215C2A659A664F9503">Jeong, Seong-Hwa</mods:namePart>
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<mods:affiliation id="7DC6DA4181FE337EC3E548DE320EE1E4">Department of Biology, Sunchon National University, Suncheon 57922, Republic of Korea</mods:affiliation>
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<mods:namePart id="3E49D10234DBEB2B191F0AC23981AAD1">Kang, Joo-Won</mods:namePart>
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<mods:affiliation id="F7106AAB1D9695B99EF7958158283ED4">Department of Biology, Sunchon National University, Suncheon 57922, Republic of Korea</mods:affiliation>
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<mods:name id="DF5D8E5A95E8B35B55DA09DD68A2E274" type="personal">
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<mods:namePart id="A6DB2F8520A029341CFD4C73BB36059A">Kim, Seung-Bum</mods:namePart>
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<mods:affiliation id="94A7BA956551FB5CC90FF3B050B661D0">Department of Microbiology, Chungnam National University, Daejeon 34134, Republic of Korea</mods:affiliation>
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<mods:namePart id="85F8BF2C5F1878EB3745EBAFFEE59300">Cho, Jang-Cheon</mods:namePart>
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<mods:affiliation id="E1924C4438558EAE4A0813763D1BE7C9">Department of Biological Sciences, Inha University, Incheon 22212, Republic of Korea</mods:affiliation>
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<mods:namePart id="1D28FDA951E8ED6CFF4BB268B6312AE4">Cha, Chang-Jun</mods:namePart>
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<mods:affiliation id="B11E391A83D45ED836E75655E0D76E1E">Department of Biotechnology, Chung-Ang University, Anseong 17546, Republic of Korea</mods:affiliation>
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<mods:namePart id="7AB473366AE50A9411CE1B87567A1148">Im, Wan-Taek</mods:namePart>
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<mods:affiliation id="BFAA763CA363C68A3C6968576C5858DF">Department of Biotechnology, Hankyong National University, Anseong 17579, Republic of Korea</mods:affiliation>
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</mods:name>
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<mods:namePart id="2631B16078A77C88045EA6616BB377E1">Bae, Jin-Woo</mods:namePart>
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<mods:affiliation id="B94B9AA758CAA8DE311D05F197D07DEF">Department of Biology, Kyung Hee University, Seoul 02447, Republic of Korea</mods:affiliation>
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</mods:name>
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<mods:name id="831F9B513B7A18D7443F5D25C80C4B1C" type="personal">
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<mods:namePart id="57755EB5238330392781131D7A9F53D2">Lee, Soon-Dong</mods:namePart>
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<mods:affiliation id="3A1A90A57D9766935018AF73D2695EB4">Faculty of Science Education, Jeju National University, Jeju 63243, Republic of Korea</mods:affiliation>
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<mods:namePart id="2CF986690633C409A986E5940FE29639">Kim, Won-Yong</mods:namePart>
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<mods:affiliation id="297E80FE3FF38BF11E90F2E0AD8B5C60">Department of Microbiology, College of Medicine, Chung-Ang University, Seoul 06974, Republic of Korea</mods:affiliation>
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</mods:name>
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<mods:namePart id="C3C567301C9E85E2AD7794B69C78B89F">Kim, Myung-Kyum</mods:namePart>
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<mods:affiliation id="A6C8925FB378FDFAE7EEC55DD6FC3CFB">Department of Bio & Environmental Technology, Division of Environmental & Life Science, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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<mods:name id="30C5015E5AF2AE67D4C43A82BE3113A6" type="personal">
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<mods:namePart id="886D68E9DA8C1A6572ACBC858B839876">Seong, Chi-Nam</mods:namePart>
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<mods:affiliation id="9AE9CBD6BE0CDBBE2D3A1DA5E81669BA">Department of Biology, Sunchon National University, Suncheon 57922, Republic of Korea</mods:affiliation>
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<mods:nameIdentifier id="1C2F33923ABD084337728C848E5B0F20" type="email">scnu@sunchon.ac.kr</mods:nameIdentifier>
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<mods:typeOfResource id="B969BFE8D867911695644B9415F75696">text</mods:typeOfResource>
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<mods:title id="E8288552F0055EEB5DD8A1240B63894F">Journal of Species Research</mods:title>
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<mods:part id="E1AC4B06854D613DA39332B045CC9C43">
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<mods:date id="70B0A6CD80CF023AFCC7A447405DF236">2019</mods:date>
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<mods:detail id="F1B7F98203509E2985447407D9284E05" type="volume">
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<mods:number id="7B1B2850429E0F06355C116888820E44">8</mods:number>
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<mods:number id="7DC8748EF04E4A3BEB2D06A501BA2259">1</mods:number>
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<mods:start id="C1E2D7969EE60E3F735C03A14C12E29E">97</mods:start>
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<mods:end id="51B9FEB85603F22DD933E0896B688A5A">108</mods:end>
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<mods:classification id="8CE158D1EACBB061008AF9F137A2430E">journal article</mods:classification>
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<mods:identifier id="135A11C6B8165F02B8DDAE6E667C4C27" type="DOI">10.12651/JSR.2019.8.1.097</mods:identifier>
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<mods:identifier id="F2A5540511A266F32C9788C8F666AEDB" type="ISSN">2713-8615</mods:identifier>
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<mods:identifier id="9D3AC28801D36AE343D8FBA0B16C57FF" type="Zenodo-Dep">8120476</mods:identifier>
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<treatment id="2A0487B6CE41FF91FCCBFA8EFDB4FAB5" LSID="urn:lsid:plazi:treatment:2A0487B6CE41FF91FCCBFA8EFDB4FAB5" httpUri="http://treatment.plazi.org/id/2A0487B6CE41FF91FCCBFA8EFDB4FAB5" lastPageId="6" lastPageNumber="103" pageId="4" pageNumber="101">
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<subSubSection id="EAB7652BCE41FF93FCCBFA8EFB5CFF1F" pageId="4" pageNumber="101" type="nomenclature">
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<paragraph id="A21236A0CE41FF93FCCBFA8EFB6AFDF3" blockId="4.[839,1445,1390,1898]" box="[839,1239,1390,1414]" pageId="4" pageNumber="101">
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<heading id="F95A81CCCE41FF93FCCBFA8EFB6AFDF3" box="[839,1239,1390,1414]" fontSize="10" level="2" pageId="4" pageNumber="101" reason="5">
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<emphasis id="90D9EAB2CE41FF93FCCBFA8EFB6AFDF3" bold="true" box="[839,1239,1390,1414]" pageId="4" pageNumber="101">
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Description of
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<taxonomicName id="65AD4D23CE41FF93FC62FA8EFB12FDF3" ID-CoL="6D6GS" ID-ENA="37915" authority="HC" authorityName="HC" box="[1006,1199,1390,1414]" class="Actinobacteridae" family="Dietziaceae" genus="Dietzia" kingdom="Bacteria" order="Actinomycetales" pageId="4" pageNumber="101" phylum="Actinobacteria" rank="species" species="maris">
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<emphasis id="90D9EAB2CE41FF93FC62FA8EFB3DFDF3" bold="true" box="[1006,1152,1390,1414]" italics="true" pageId="4" pageNumber="101">Dietzia maris</emphasis>
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HC
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</taxonomicName>
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_48
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</emphasis>
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</heading>
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</paragraph>
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<paragraph id="A21236A0CE41FF93FCD2FA6FFB5CFF1F" blockId="4.[839,1445,1390,1898]" pageId="4" pageNumber="101">
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Cells are Gram-stain-positive, non-flagellated, and rod shaped. Colonies are circular and light-yellow colored after 3 days on TSA at 30°C. Nitrate is reduced and esculin is weakly hydrolyzed. The strain shows negative reactions for enzyme activities of oxidase, urease,
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<emphasis id="90D9EAB2CE41FF93FAE7F9F0FAC7FE5D" box="[1387,1402,1552,1576]" italics="true" pageId="4" pageNumber="101">β</emphasis>
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-galactosidase, and arginine dihydrolase, whereas the strain shows positive reaction for enzyme activity of gelatinase. Indole is not produced and glucose is not fermented. The strain utilizes D-glucose,
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<emphasis id="90D9EAB2CE41FF93FBD6F971FBD1FEDD" box="[1114,1132,1681,1704]" italics="true" pageId="4" pageNumber="101">N</emphasis>
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-acetyl-glucosamine, D-maltose, and potassium gluconate, and weakly utilizes adipic acid and malic acid, whereas the strain does not utilize L-arabinose, D-mannose, D-mannitol, capric acid, trisodium citrate, and phenylacetic acid. Strain HC_48 (= NIBRBAC000501067) was isolated from a soil sample, Hwacheon,
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<collectingRegion id="6069F842CE41FF93FC48F8B2FB2DFF1F" box="[964,1168,1874,1898]" country="South Korea" name="Gangwon" pageId="4" pageNumber="101">Gangwon Province</collectingRegion>
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,
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<collectingCountry id="DABA7630CE41FF93FB15F8B3FB61FF1F" box="[1177,1244,1875,1898]" name="South Korea" pageId="4" pageNumber="101">Korea</collectingCountry>
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.
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</paragraph>
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</subSubSection>
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<subSubSection id="EAB7652BCE41FF91FCCBF873FDB4FAB5" lastPageId="6" lastPageNumber="103" pageId="4" pageNumber="101" type="description">
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<paragraph id="A21236A0CE41FF93FCCBF873FA19FFBE" blockId="4.[839,1444,1938,1995]" pageId="4" pageNumber="101">
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<emphasis id="90D9EAB2CE41FF93FCCBF873FACDFFDE" bold="true" box="[839,1392,1938,1963]" pageId="4" pageNumber="101">
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Description of
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<taxonomicName id="65AD4D23CE41FF93FC62F872FA98FFDF" box="[1006,1317,1938,1962]" class="Actinobacteridae" family="Mycobacteriaceae" genus="Mycobacterium" kingdom="Bacteria" order="Actinomycetales" pageId="4" pageNumber="101" phylum="Actinobacteria" rank="species" species="brisbanense">
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<emphasis id="90D9EAB2CE41FF93FC62F872FA98FFDF" bold="true" box="[1006,1317,1938,1962]" italics="true" pageId="4" pageNumber="101">Mycobacterium brisbanense</emphasis>
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</taxonomicName>
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D7-24
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</emphasis>
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Cells are Gram-stain-positive, non-flagellated, non-pig-
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</paragraph>
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<caption id="F6D26628CE40FF92FF1CF884FE25FFBF" ID-DOI="http://doi.org/10.5281/zenodo.8120480" ID-Zenodo-Dep="8120480" httpUri="https://zenodo.org/record/8120480/files/figure.png" pageId="5" pageNumber="102" startId="5.[144,177,1892,1914]" targetBox="[419,1100,259,1859]" targetPageId="5" targetType="figure">
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<paragraph id="A21236A0CE40FF92FF1CF884FE25FFBF" blockId="5.[144,1414,1892,1994]" pageId="5" pageNumber="102">
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<emphasis id="90D9EAB2CE40FF92FF1CF884FF73FF0C" bold="true" box="[144,206,1892,1914]" pageId="5" pageNumber="102">Fig. 2.</emphasis>
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Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the class
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<taxonomicName id="65AD4D23CE40FF92FD8FF89FFD37FFE1" authorityName="Cavalier-Smith" authorityYear="2002" box="[515,650,1919,1940]" class="Actinobacteria" kingdom="Bacteria" pageId="5" pageNumber="102" phylum="Actinobacteria" rank="class">
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<emphasis id="90D9EAB2CE40FF92FD8FF89FFD37FFE1" box="[515,650,1919,1940]" italics="true" pageId="5" pageNumber="102">Actinobacteria</emphasis>
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</taxonomicName>
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. Bootstrap values (>70%) are shown above nodes. Filled circles indicate the nodes recovered by three other treeing methods including Maximum-likelihood, Maximum-parsimony and Neighbor-joining. Bar, 0.01 substitutions per nucleotide position.
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</paragraph>
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</caption>
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<paragraph id="A21236A0CE43FF91FF22FEE5FDB4FAB5" blockId="6.[174,780,261,704]" pageId="6" pageNumber="103">
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mented, and rod-shaped. Colonies are punctiform, convex, entire, and cream colored after 12 days on NA at 30°C. Nitrate is reduced and esculin is not hydrolyzed. The strain shows negative reactions for enzyme activities of urease, gelatinase,
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<emphasis id="90D9EAB2CE43FF91FE14FE66FE1AF9EB" box="[408,423,390,414]" italics="true" pageId="6" pageNumber="103">β</emphasis>
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-galactosidase and arginine dihydrolase, whereas the strain shows positive reaction for enzyme activity of oxidase. Indole is not produced and glucose is not fermented. The strain utilizes
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<emphasis id="90D9EAB2CE43FF91FD0CFE08FD2FF98A" box="[640,658,488,511]" italics="true" pageId="6" pageNumber="103">N</emphasis>
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-acetyl-glucosamine, potassium gluconate and malic acid, and weakly utilizes D-mannitol, whereas the strain does not utilize L-arabinose, D-mannose, D-glucose, D-maltose, capric acid, adipic acid, trisodium citrate, and phenylacetic acid. Strain D7-24 (= NIBRBAC000501036) was isolated from mammal feces,
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<collectingRegion id="6069F842CE43FF91FE07FD48FE05FAB5" box="[395,440,680,704]" country="South Korea" name="Jeju" pageId="6" pageNumber="103">Jeju</collectingRegion>
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,
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<collectingCountry id="DABA7630CE43FF91FE4EFD49FDB8FAB5" box="[450,517,681,704]" name="South Korea" pageId="6" pageNumber="103">Korea</collectingCountry>
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.
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</paragraph>
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</subSubSection>
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</treatment>
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||
</document> |