239 lines
43 KiB
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239 lines
43 KiB
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<mods:title id="766CECD7F630AEE4C7FA01401A8A9057">New xenophyophores (Foraminifera, Monothalamea) from the eastern Clarion-Clipperton Zone (equatorial Pacific)</mods:title>
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<mods:namePart id="6E668DF4DB403406A632FA3A533DD9F5">Holzmann, Maria</mods:namePart>
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<mods:affiliation id="5CDD23A98F6B03E9FA450187F88C5321">Department of Genetics and Evolution, University of Geneva, Quai Ernest Ansermet 30, 1211 Geneva 4, Geneva, Switzerland.</mods:affiliation>
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<mods:nameIdentifier id="1423F166E34A5B9B54E34A4DF7EB761B" type="email">olzmann@unige.ch</mods:nameIdentifier>
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<mods:namePart id="C35960581B6C2EE9D2A7419A085A47DC">Barrenechea-Angeles, Inés</mods:namePart>
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<mods:affiliation id="6889506970AB7472279DCE6B8003C500">Department of Genetics and Evolution, University of Geneva, Quai Ernest Ansermet 30, 1211 Geneva 4, Geneva, Switzerland. & Department of Geosciences, The Arctic University of Norway, Dramsvegen 201, 9037 TromsØ, Norway.</mods:affiliation>
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<mods:affiliation id="B227B153012ACD75C54745096D05CADD">Tropical Marine Science Institute, National University of Singapore, 18 Kent Ridge Road, Singapore 119227, Singapore. & Lee Kong Chian Natural History Museum, National University of Singapore, 2 Conservatory Drive, Singapore 117377</mods:affiliation>
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<mods:namePart id="E5E229D89A9581110FBD373146503298">Pawlowski, Jan</mods:namePart>
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<mods:affiliation id="78378294113B483B910C1D35C81ED263">Institute of Oceanology, Polish Academy of Sciences, 81 - 712 Sopot, Poland. & ID-Gene Ecodiagnostics, Chemin du Pont-du-Centenaire 109, 1228 Plan-les-Ouates, Switzerland.</mods:affiliation>
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<treatment id="03A987A17B45AF6566C44212FB05DEA9" ID-DOI="http://doi.org/10.5281/zenodo.11247628" ID-GBIF-Taxon="222869771" ID-Zenodo-Dep="11247628" LSID="urn:lsid:plazi:treatment:03A987A17B45AF6566C44212FB05DEA9" httpUri="http://treatment.plazi.org/id/03A987A17B45AF6566C44212FB05DEA9" lastPageNumber="157" pageId="6" pageNumber="157">
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<taxonomicName id="4C004D347B45AF6566C44212FC98DBF4" ID-CoL="7NPT8" authority="Gooday & Holzmann, 2017" authorityName="Gooday" authorityYear="2017" box="[151,769,621,648]" class="Monothalamea" family="Syringamminidae" genus="Aschemonella" kingdom="Chromista" pageId="6" pageNumber="157" phylum="Foraminifera" rank="genus">
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<emphasis id="B974EAA57B45AF6566C44212FC98DBF4" bold="true" box="[151,769,621,648]" pageId="6" pageNumber="157">
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<emphasis id="B974EAA57B45AF6566C44212FEDBDBF4" bold="true" box="[151,322,621,648]" italics="true" pageId="6" pageNumber="157">Aschemonella</emphasis>
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monilis Gooday & Holzmann, 2017
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<subSubSection id="C31A653C7B45AF6566C442EDFE75DBD0" box="[151,492,658,684]" pageId="6" pageNumber="157" type="description">
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<paragraph id="8BBF36B77B45AF6566C442EDFE75DBD0" blockId="6.[151,769,621,684]" box="[151,492,658,684]" pageId="6" pageNumber="157">
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<figureCitation id="133B2A327B45AF6566C442EDFF45DBD0" box="[151,220,658,684]" captionStart="FIGURE 2" captionStartId="7.[151,250,1598,1622]" captionTargetBox="[151,1436,181,1574]" captionTargetId="figure-18@7.[151,1436,181,1574]" captionTargetPageId="7" captionText="FIGURE 2. Aschemonella monilis Gooday & Holzmann 2017. A–D, Sequenced specimens. A, Dark specimen attached to nodule; RC1056 (BC026). B, Interior of test fragment with red granellare (after removal of most pieces for sequencing) and dark stercomare; RC0056 (BC001). C, Fragment with two segments; RC0490B (BC010).D, E, RC1900.1 (BC045). D, Fragment with broken segment containing granellare. E, Detail of dome and tubular apertural structure. F, G, Specimens without cytoplasm; RC1900.2 (BC045). F, Complete fragment. G, Detail of apertural structures. No scale is available for B." figureDoi="http://doi.org/10.5281/zenodo.10792059" httpUri="https://zenodo.org/record/10792059/files/figure.png" pageId="6" pageNumber="157">Fig. 2</figureCitation>
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; Supplementary
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<figureCitation id="133B2A327B45AF6567CB42EDFE75DBD0" box="[408,492,658,684]" captionStart="FIGURE 1" captionStartId="5.[151,250,1900,1924]" captionTargetBox="[166,1429,189,1868]" captionTargetId="figure-18@5.[151,1436,179,1874]" captionTargetPageId="5" captionText="FIGURE 1. PhyML phylogenetic tree based on the 3'end fragment of the SSU rRNA gene, showing the evolutionary relationships of 79 foraminiferal sequences belonging to monothalamids. Specimens marked in bold indicate those for which sequences were acquired during the present study. The tree is unrooted. Specimens are identified by their accession numbers. Numbers at nodes indicate bootstrap values (BVs). Only BVs>70% are shown." figureDoi="http://doi.org/10.5281/zenodo.10792057" httpUri="https://zenodo.org/record/10792057/files/figure.png" pageId="6" pageNumber="157">Figs S1</figureCitation>
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<subSubSection id="C31A653C7B45AF6566C442A9FC68DA71" pageId="6" pageNumber="157" type="reference_group">
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<paragraph id="8BBF36B77B45AF6566C442A9FC68DA71" blockId="6.[151,1402,726,781]" pageId="6" pageNumber="157">
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<taxonomicName id="4C004D347B45AF6566C442A9FDFDDB92" ID-CoL="7NPT8" authority="Gooday and Holzmann" authorityName="Gooday and Holzmann" authorityYear="1879" box="[151,612,726,750]" class="Monothalamea" family="Syringamminidae" genus="Aschemonella" kingdom="Chromista" pageId="6" pageNumber="157" phylum="Foraminifera" rank="species" species="monila">
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<emphasis id="B974EAA57B45AF6566C442A9FEBCDB92" box="[151,293,726,750]" italics="true" pageId="6" pageNumber="157">Aschemonella</emphasis>
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monila Gooday and Holzmann
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</taxonomicName>
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in
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<bibRefCitation id="EF914B467B45AF6564D742A9FCC2DB92" author="Gooday, A. J. & Holzmann, M. & Caulle, C. & Goineau, A. & Jones, D. O. B. & Kamenskaya, O. E. & Simon-Lledo, E. & Weber, A. A. - T. & Pawlowski, J." box="[644,859,726,750]" pageId="6" pageNumber="157" pagination="479 - 499" refId="ref21702" refString="Gooday, A. J., Holzmann, M., Caulle, C., Goineau, A., Jones, D. O. B., Kamenskaya, O. E., Simon-Lledo, E., Weber, A. A. - T. & Pawlowski, J. (2017 b) New species of the xenophyophore genus Aschemonella (Rhizaria, Foraminifera) from areas of the abyssal eastern Pacific licensed for polymetallic nodule exploration. Zoological Journal of the Linnean Society, 182 (3), 479 - 499. https: // doi. org / 10.1093 / zoolinnean / zlx 052" type="journal article" year="2017">
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Gooday
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||
<emphasis id="B974EAA57B45AF65648942A8FC9EDB92" box="[730,775,726,750]" italics="true" pageId="6" pageNumber="157">et al</emphasis>
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., 2017b
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</bibRefCitation>
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,
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<figureCitation id="133B2A327B45AF65653542A9FC4CDB92" box="[870,981,726,750]" captionStart="FIGURE 2" captionStartId="7.[151,250,1598,1622]" captionTargetBox="[151,1436,181,1574]" captionTargetId="figure-18@7.[151,1436,181,1574]" captionTargetPageId="7" captionText="FIGURE 2. Aschemonella monilis Gooday & Holzmann 2017. A–D, Sequenced specimens. A, Dark specimen attached to nodule; RC1056 (BC026). B, Interior of test fragment with red granellare (after removal of most pieces for sequencing) and dark stercomare; RC0056 (BC001). C, Fragment with two segments; RC0490B (BC010).D, E, RC1900.1 (BC045). D, Fragment with broken segment containing granellare. E, Detail of dome and tubular apertural structure. F, G, Specimens without cytoplasm; RC1900.2 (BC045). F, Complete fragment. G, Detail of apertural structures. No scale is available for B." figureDoi="http://doi.org/10.5281/zenodo.10792059" httpUri="https://zenodo.org/record/10792059/files/figure.png" pageId="6" pageNumber="157">Figs 2A–E</figureCitation>
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,
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<figureCitation id="133B2A327B45AF65658C42A9FB85DB92" box="[991,1052,726,750]" captionStart="FIGURE 3" captionStartId="9.[151,250,1888,1912]" captionTargetBox="[151,1436,273,1865]" captionTargetId="figure-56@9.[151,1436,273,1865]" captionTargetPageId="9" captionText="FIGURE 3. Aschemonella tani Gooday & Holzmann sp. nov.; holotype RC1555 (BC036). A, Shipboard photograph showing grouping of structures on nodule summit; numbers 1–3 identify parts illustrated in other photographs. B–F, Laboratory photographs. B, Part 1 from top of nodule. C, Part 2. D, E, Part 3 viewed from different sides. F, Detail of Part 3." figureDoi="http://doi.org/10.5281/zenodo.10792061" httpUri="https://zenodo.org/record/10792061/files/figure.png" pageId="6" pageNumber="157">3A–F</figureCitation>
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; Supplementary
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<figureCitation id="133B2A327B45AF65629542A9FA88DB92" box="[1222,1297,726,750]" captionStart="FIGURE 1" captionStartId="5.[151,250,1900,1924]" captionTargetBox="[166,1429,189,1868]" captionTargetId="figure-18@5.[151,1436,179,1874]" captionTargetPageId="5" captionText="FIGURE 1. PhyML phylogenetic tree based on the 3'end fragment of the SSU rRNA gene, showing the evolutionary relationships of 79 foraminiferal sequences belonging to monothalamids. Specimens marked in bold indicate those for which sequences were acquired during the present study. The tree is unrooted. Specimens are identified by their accession numbers. Numbers at nodes indicate bootstrap values (BVs). Only BVs>70% are shown." figureDoi="http://doi.org/10.5281/zenodo.10792057" httpUri="https://zenodo.org/record/10792057/files/figure.png" pageId="6" pageNumber="157">Fig. S1</figureCitation>
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,
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<figureCitation id="133B2A327B45AF65634F42A9FAEFDB92" box="[1308,1398,726,750]" captionStart-0="FIGURE 1" captionStart-1="FIGURE 2" captionStart-2="FIGURE 3" captionStart-3="FIGURE 4" captionStart-4="FIGURE 5" captionStart-5="FIGURE 6" captionStart-6="FIGURE 7" captionStart-7="FIGURE 8" captionStartId-0="5.[151,250,1900,1924]" captionStartId-1="7.[151,250,1598,1622]" captionStartId-2="9.[151,250,1888,1912]" captionStartId-3="10.[151,250,1168,1192]" captionStartId-4="11.[151,250,1753,1777]" captionStartId-5="13.[151,250,1983,2007]" captionStartId-6="14.[151,250,1153,1177]" captionStartId-7="16.[151,250,1871,1895]" captionTargetBox-0="[166,1429,189,1868]" captionTargetBox-1="[151,1436,181,1574]" captionTargetBox-2="[151,1436,273,1865]" captionTargetBox-3="[151,1436,181,1144]" captionTargetBox-4="[151,1436,376,1729]" captionTargetBox-5="[151,1436,341,1960]" captionTargetBox-6="[151,1436,181,1129]" captionTargetBox-7="[151,1436,181,1847]" captionTargetId-0="figure-18@5.[151,1436,179,1874]" captionTargetId-1="figure-18@7.[151,1436,181,1574]" captionTargetId-2="figure-56@9.[151,1436,273,1865]" captionTargetId-3="figure-20@10.[151,1436,181,1144]" captionTargetId-4="figure-47@11.[151,1436,376,1729]" captionTargetId-5="figure-100@13.[151,1436,341,1960]" captionTargetId-6="figure-20@14.[151,1436,181,1129]" captionTargetId-7="figure-20@16.[151,1436,181,1848]" captionTargetPageId-0="5" captionTargetPageId-1="7" captionTargetPageId-2="9" captionTargetPageId-3="10" captionTargetPageId-4="11" captionTargetPageId-5="13" captionTargetPageId-6="14" captionTargetPageId-7="16" captionText-0="FIGURE 1. PhyML phylogenetic tree based on the 3'end fragment of the SSU rRNA gene, showing the evolutionary relationships of 79 foraminiferal sequences belonging to monothalamids. Specimens marked in bold indicate those for which sequences were acquired during the present study. The tree is unrooted. Specimens are identified by their accession numbers. Numbers at nodes indicate bootstrap values (BVs). Only BVs>70% are shown." captionText-1="FIGURE 2. Aschemonella monilis Gooday & Holzmann 2017. A–D, Sequenced specimens. A, Dark specimen attached to nodule; RC1056 (BC026). B, Interior of test fragment with red granellare (after removal of most pieces for sequencing) and dark stercomare; RC0056 (BC001). C, Fragment with two segments; RC0490B (BC010).D, E, RC1900.1 (BC045). D, Fragment with broken segment containing granellare. E, Detail of dome and tubular apertural structure. F, G, Specimens without cytoplasm; RC1900.2 (BC045). F, Complete fragment. G, Detail of apertural structures. No scale is available for B." captionText-2="FIGURE 3. Aschemonella tani Gooday & Holzmann sp. nov.; holotype RC1555 (BC036). A, Shipboard photograph showing grouping of structures on nodule summit; numbers 1–3 identify parts illustrated in other photographs. B–F, Laboratory photographs. B, Part 1 from top of nodule. C, Part 2. D, E, Part 3 viewed from different sides. F, Detail of Part 3." captionText-3="FIGURE 4. Aschemonella tani Gooday & Holzmann sp. nov., laboratory photographs of fragments from holotype; RC1555 (BC036). A, Detail of Part 1 from summit of nodule showing dark stercomare seen through wall of test. B, Part 2 broken open to expose stercomare. C, Detail of stercomare in Part 2. D, Granellare strands." captionText-4="FIGURE 5. Abyssalia foliformis Gooday & Holzmann 2020; RC0612 (BC015). A, Shipboard photograph of unique test fragment. B–F, Laboratory photographs of test fragment; the stercomare had been lost from the central part of the fragment. C, D, Details of fragment showing granellare. E, Fragments of cytoplasm detached from test; note that the fragments are partly attached to sponge spicules. F, Loose stercomare pellets that had fallen out of the test." captionText-5="FIGURE 6. Abyssalia aff. foliformis, shipboard photographs; RC0615 (BC011).A, B, Two different side views. C, Test viewed from above. D–F, Details of test; the yellow tube in E is probably part of a Saccorhiza ramosa test." captionText-6="FIGURE 7. Abyssalia aff. foliformis, laboratory photographs; Specimen RC0615 (BC011). A, Fragment. B, Detail of edge. C–D, Broken edge showing granellare embedded in dak stercomare masses." captionText-7="FIGURE 8. Claraclippia seminuda Gooday & Holzmann gen. & sp. nov., shipboard photographs; holotype, RC0202 (BC005). A, B, Test photographed on the surface of the box core immediately after collection. C, D, Test removed from box core. E, F, Details of test; note the small open spaces.Arrows indicate the same feature in A–D; asterisk indicate point of attachment. Scales are not available for B and C." figureDoi-0="http://doi.org/10.5281/zenodo.10792057" figureDoi-1="http://doi.org/10.5281/zenodo.10792059" figureDoi-2="http://doi.org/10.5281/zenodo.10792061" figureDoi-3="http://doi.org/10.5281/zenodo.10792063" figureDoi-4="http://doi.org/10.5281/zenodo.10792067" figureDoi-5="http://doi.org/10.5281/zenodo.10792071" figureDoi-6="http://doi.org/10.5281/zenodo.10792073" figureDoi-7="http://doi.org/10.5281/zenodo.10792079" httpUri-0="https://zenodo.org/record/10792057/files/figure.png" httpUri-1="https://zenodo.org/record/10792059/files/figure.png" httpUri-2="https://zenodo.org/record/10792061/files/figure.png" httpUri-3="https://zenodo.org/record/10792063/files/figure.png" httpUri-4="https://zenodo.org/record/10792067/files/figure.png" httpUri-5="https://zenodo.org/record/10792071/files/figure.png" httpUri-6="https://zenodo.org/record/10792073/files/figure.png" httpUri-7="https://zenodo.org/record/10792079/files/figure.png" pageId="6" pageNumber="157">Figs 1–8</figureCitation>
|
||
.
|
||
<taxonomicName id="4C004D347B45AF6566C4428AFCE5DA71" ID-CoL="7RXBX" authority="Gooday and Holzmann. Gooday et al., 2020 a, p. 4" authorityName="Gooday and Holzmann. Gooday" authorityPageNumber="4" authorityYear="2020" box="[151,892,757,781]" class="Monothalamea" family="Syringamminidae" genus="Aschemonella" kingdom="Chromista" pageId="6" pageNumber="157" phylum="Foraminifera" rank="species" species="monilis">
|
||
<emphasis id="B974EAA57B45AF6566C4428AFEEEDA71" box="[151,375,757,781]" italics="true" pageId="6" pageNumber="157">Aschemonella monilis</emphasis>
|
||
Gooday and Holzmann.
|
||
<bibRefCitation id="EF914B467B45AF656427428AFCD3DA71" author="Gooday, A. J. & Durden, J. M. & Holzmann, M. & Pawlowski, J. & Smith, C. R." box="[628,842,757,781]" pageId="6" pageNumber="157" pagination="125715" refId="ref21925" refString="Gooday, A. J., Durden, J. M., Holzmann, M., Pawlowski, J. & Smith, C. R. (2020 a) Xenophyophores (Rhizaria, Foraminifera), including four new species and two new genera, from the western Clarion-Clipperton Zone (abyssal equatorial Pacific). European Journal of Protistology, 75, 125715. https: // doi. org / 10.1016 / j. ejop. 2020.125715" type="journal article" year="2020">
|
||
Gooday
|
||
<emphasis id="B974EAA57B45AF6564984289FD6EDA71" box="[715,759,757,781]" italics="true" pageId="6" pageNumber="157">et al</emphasis>
|
||
., 2020a
|
||
</bibRefCitation>
|
||
, p. 4
|
||
</taxonomicName>
|
||
-6, figs 2-3.
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="C31A653C7B45AF6566C44344FD37DA99" pageId="6" pageNumber="157" type="materials_examined">
|
||
<paragraph id="8BBF36B77B45AF6566C44344FD37DA99" blockId="6.[151,1437,827,2006]" pageId="6" pageNumber="157">
|
||
<emphasis id="B974EAA57B45AF6566C44344FE1BDA29" bold="true" box="[151,386,827,853]" pageId="6" pageNumber="157">Material examined</emphasis>
|
||
. BC001 RC0056: morphology and genetics (isolates 21438, 21439). BC010 RC049B: morphology and genetics (isolate 21431). BC025 RC1042: morphology only. BC026 RC1056: morphology and genetics (isolate 21108). BC031 RC1345: morphology only. BC040 RC1689: morphology and genetics (isolate 21435). BC040 RC1731: morphology only. BC045 RC1900.1: morphology and genetics (isolate 21444). Sequenced isolates: 21108, 21431, 21435, 21444 (
|
||
<tableCitation id="C682030C7B45AF65641A43B4FD38DA99" box="[585,673,971,997]" captionStart="TABLE 2" captionStartId="3.[152,245,151,175]" captionTargetPageId="3" captionText="TABLE 2. Summary of isolate and accession numbers for xenophyophres included in the cladogram. Species described in this paper are in bold." httpUri="http://table.plazi.org/id/DF7F663F7B40AF6066CB40E8FE02D9AF" pageId="6" pageNumber="157" tableUuid="DF7F663F7B40AF6066CB40E8FE02D9AF">Table 2</tableCitation>
|
||
).
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="C31A653C7B45AF6566944390FB05DEA9" pageId="6" pageNumber="157" type="description">
|
||
<paragraph id="8BBF36B77B45AF6566944390FBCCDCE9" blockId="6.[151,1437,827,2006]" pageId="6" pageNumber="157">
|
||
<emphasis id="B974EAA57B45AF6566944390FE65DD75" bold="true" box="[199,508,1007,1033]" pageId="6" pageNumber="157">Description and remarks</emphasis>
|
||
.
|
||
<taxonomicName id="4C004D347B45AF65645C4390FC92DD75" box="[527,779,1007,1033]" class="Monothalamea" family="Syringamminidae" genus="Aschemonella" kingdom="Chromista" pageId="6" pageNumber="157" phylum="Foraminifera" rank="species" species="monilis">
|
||
<emphasis id="B974EAA57B45AF65645C4390FC92DD75" box="[527,779,1007,1033]" italics="true" pageId="6" pageNumber="157">Aschemonella monilis</emphasis>
|
||
</taxonomicName>
|
||
is by far the most abundant xenophyophore species in our collection. It is represented by around 34 complete and fragmentary specimens (
|
||
<tableCitation id="C682030C7B45AF65620A446CFB2BDD51" box="[1113,1202,1043,1069]" captionStart="TABLE 2" captionStartId="3.[152,245,151,175]" captionTargetPageId="3" captionText="TABLE 2. Summary of isolate and accession numbers for xenophyophres included in the cladogram. Species described in this paper are in bold." httpUri="http://table.plazi.org/id/DF7F663F7B40AF6066CB40E8FE02D9AF" pageId="6" pageNumber="157" tableUuid="DF7F663F7B40AF6066CB40E8FE02D9AF">Table 2</tableCitation>
|
||
), although not all of these were examined in detail. They conform closely to the original description (
|
||
<bibRefCitation id="EF914B467B45AF6562674448FABADD2D" author="Gooday, A. J. & Holzmann, M. & Caulle, C. & Goineau, A. & Jones, D. O. B. & Kamenskaya, O. E. & Simon-Lledo, E. & Weber, A. A. - T. & Pawlowski, J." box="[1076,1315,1079,1106]" pageId="6" pageNumber="157" pagination="479 - 499" refId="ref21702" refString="Gooday, A. J., Holzmann, M., Caulle, C., Goineau, A., Jones, D. O. B., Kamenskaya, O. E., Simon-Lledo, E., Weber, A. A. - T. & Pawlowski, J. (2017 b) New species of the xenophyophore genus Aschemonella (Rhizaria, Foraminifera) from areas of the abyssal eastern Pacific licensed for polymetallic nodule exploration. Zoological Journal of the Linnean Society, 182 (3), 479 - 499. https: // doi. org / 10.1093 / zoolinnean / zlx 052" type="journal article" year="2017">
|
||
Gooday
|
||
<emphasis id="B974EAA57B45AF6562DD4447FB58DD2D" box="[1166,1217,1079,1105]" italics="true" pageId="6" pageNumber="157">et al</emphasis>
|
||
., 2017b
|
||
</bibRefCitation>
|
||
).
|
||
<specimenCount id="9D06FD3E7B45AF6563644448FE95DD09" count="19" pageId="6" pageNumber="157" type="generic">Nineteen specimens</specimenCount>
|
||
were found attached to nodules, of which three encrusted the host nodule for their entire length and the others extended upwards from the surface to a greater or lesser extent. The remaining 15 were unattached, at least when found. The majority of specimens are dark grey with either a smooth, relatively fine-grained wall or a rougher, more coarsely grained wall. Some of the latter
|
||
<typeStatus id="54BB88157B45AF6564E444B7FD7EDD9E" box="[695,743,1224,1250]" pageId="6" pageNumber="157">type</typeStatus>
|
||
resemble the ‘delicate’ form distinguished by
|
||
<bibRefCitation id="EF914B467B45AF65635344B8FF69DC79" author="Gooday, A. J. & Holzmann, M. & Caulle, C. & Goineau, A. & Jones, D. O. B. & Kamenskaya, O. E. & Simon-Lledo, E. & Weber, A. A. - T. & Pawlowski, J." pageId="6" pageNumber="157" pagination="479 - 499" refId="ref21702" refString="Gooday, A. J., Holzmann, M., Caulle, C., Goineau, A., Jones, D. O. B., Kamenskaya, O. E., Simon-Lledo, E., Weber, A. A. - T. & Pawlowski, J. (2017 b) New species of the xenophyophore genus Aschemonella (Rhizaria, Foraminifera) from areas of the abyssal eastern Pacific licensed for polymetallic nodule exploration. Zoological Journal of the Linnean Society, 182 (3), 479 - 499. https: // doi. org / 10.1093 / zoolinnean / zlx 052" type="journal article" year="2017">
|
||
Gooday
|
||
<emphasis id="B974EAA57B45AF65633144B7FA0CDD9D" box="[1378,1429,1223,1249]" italics="true" pageId="6" pageNumber="157">et al</emphasis>
|
||
. (2017b)
|
||
</bibRefCitation>
|
||
(Supplementary
|
||
<figureCitation id="133B2A327B45AF6567E64494FDDBDC79" box="[437,578,1259,1285]" captionStart="FIGURE 1" captionStartId="5.[151,250,1900,1924]" captionTargetBox="[166,1429,189,1868]" captionTargetId="figure-18@5.[151,1436,179,1874]" captionTargetPageId="5" captionText="FIGURE 1. PhyML phylogenetic tree based on the 3'end fragment of the SSU rRNA gene, showing the evolutionary relationships of 79 foraminiferal sequences belonging to monothalamids. Specimens marked in bold indicate those for which sequences were acquired during the present study. The tree is unrooted. Specimens are identified by their accession numbers. Numbers at nodes indicate bootstrap values (BVs). Only BVs>70% are shown." figureDoi="http://doi.org/10.5281/zenodo.10792057" httpUri="https://zenodo.org/record/10792057/files/figure.png" pageId="6" pageNumber="157">Fig. S1A, B</figureCitation>
|
||
). Other specimens are paler, dull orange to yellowish in overall colour but speckled with a variable density of dark grains (
|
||
<figureCitation id="133B2A327B45AF6564F64570FCA0DC56" box="[677,825,1295,1322]" captionStart="FIGURE 2" captionStartId="7.[151,250,1598,1622]" captionTargetBox="[151,1436,181,1574]" captionTargetId="figure-18@7.[151,1436,181,1574]" captionTargetPageId="7" captionText="FIGURE 2. Aschemonella monilis Gooday & Holzmann 2017. A–D, Sequenced specimens. A, Dark specimen attached to nodule; RC1056 (BC026). B, Interior of test fragment with red granellare (after removal of most pieces for sequencing) and dark stercomare; RC0056 (BC001). C, Fragment with two segments; RC0490B (BC010).D, E, RC1900.1 (BC045). D, Fragment with broken segment containing granellare. E, Detail of dome and tubular apertural structure. F, G, Specimens without cytoplasm; RC1900.2 (BC045). F, Complete fragment. G, Detail of apertural structures. No scale is available for B." figureDoi="http://doi.org/10.5281/zenodo.10792059" httpUri="https://zenodo.org/record/10792059/files/figure.png" pageId="6" pageNumber="157">Fig. 2C, D, F</figureCitation>
|
||
; Supplementary
|
||
<figureCitation id="133B2A327B45AF6565A14570FBC0DC55" box="[1010,1113,1295,1321]" captionStart="FIGURE 1" captionStartId="5.[151,250,1900,1924]" captionTargetBox="[166,1429,189,1868]" captionTargetId="figure-18@5.[151,1436,179,1874]" captionTargetPageId="5" captionText="FIGURE 1. PhyML phylogenetic tree based on the 3'end fragment of the SSU rRNA gene, showing the evolutionary relationships of 79 foraminiferal sequences belonging to monothalamids. Specimens marked in bold indicate those for which sequences were acquired during the present study. The tree is unrooted. Specimens are identified by their accession numbers. Numbers at nodes indicate bootstrap values (BVs). Only BVs>70% are shown." figureDoi="http://doi.org/10.5281/zenodo.10792057" httpUri="https://zenodo.org/record/10792057/files/figure.png" pageId="6" pageNumber="157">Fig. S1D</figureCitation>
|
||
). These lighter coloured tests have generally smoother surfaces than the darker ones. Most sequenced specimens were of the paler, smooth-walled
|
||
<typeStatus id="54BB88157B45AF6566C44527FF53DC0E" box="[151,202,1368,1394]" pageId="6" pageNumber="157">type</typeStatus>
|
||
, but they grouped together with one having a darker, rougher wall (
|
||
<figureCitation id="133B2A327B45AF6565EF4528FB8EDC0D" box="[956,1047,1367,1393]" captionStart="FIGURE 2" captionStartId="7.[151,250,1598,1622]" captionTargetBox="[151,1436,181,1574]" captionTargetId="figure-18@7.[151,1436,181,1574]" captionTargetPageId="7" captionText="FIGURE 2. Aschemonella monilis Gooday & Holzmann 2017. A–D, Sequenced specimens. A, Dark specimen attached to nodule; RC1056 (BC026). B, Interior of test fragment with red granellare (after removal of most pieces for sequencing) and dark stercomare; RC0056 (BC001). C, Fragment with two segments; RC0490B (BC010).D, E, RC1900.1 (BC045). D, Fragment with broken segment containing granellare. E, Detail of dome and tubular apertural structure. F, G, Specimens without cytoplasm; RC1900.2 (BC045). F, Complete fragment. G, Detail of apertural structures. No scale is available for B." figureDoi="http://doi.org/10.5281/zenodo.10792059" httpUri="https://zenodo.org/record/10792059/files/figure.png" pageId="6" pageNumber="157">Fig. 2A</figureCitation>
|
||
). This is consistent with the earlier genetic data (Gooday
|
||
<emphasis id="B974EAA57B45AF6567DD4503FE26DCE9" box="[398,447,1403,1429]" italics="true" pageId="6" pageNumber="157">et al</emphasis>
|
||
., 2017), and indicates that they represent the same species.
|
||
</paragraph>
|
||
<paragraph id="8BBF36B77B45AF65669445E0FCE8DF81" blockId="6.[151,1437,827,2006]" pageId="6" pageNumber="157">
|
||
Apertural structures were observed in
|
||
<specimenCount id="9D06FD3E7B45AF65642045DFFC80DCC5" box="[627,793,1439,1466]" count="2" pageId="6" pageNumber="157" type="generic">two specimens</specimenCount>
|
||
from BC045 (
|
||
<specimenCode id="DBA69ECC7B45AF6565E845E0FBB6DCC5" box="[955,1071,1439,1465]" collectionCode="RC" pageId="6" pageNumber="157">RC1900.1</specimenCode>
|
||
& 2). One has a smooth, blisterlike dome, measuring 1.42 × 1.00 mm, located near the junction between several chambers (
|
||
<figureCitation id="133B2A327B45AF6562E545BCFAABDCA1" box="[1206,1330,1475,1501]" captionStart="FIGURE 2" captionStartId="7.[151,250,1598,1622]" captionTargetBox="[151,1436,181,1574]" captionTargetId="figure-18@7.[151,1436,181,1574]" captionTargetPageId="7" captionText="FIGURE 2. Aschemonella monilis Gooday & Holzmann 2017. A–D, Sequenced specimens. A, Dark specimen attached to nodule; RC1056 (BC026). B, Interior of test fragment with red granellare (after removal of most pieces for sequencing) and dark stercomare; RC0056 (BC001). C, Fragment with two segments; RC0490B (BC010).D, E, RC1900.1 (BC045). D, Fragment with broken segment containing granellare. E, Detail of dome and tubular apertural structure. F, G, Specimens without cytoplasm; RC1900.2 (BC045). F, Complete fragment. G, Detail of apertural structures. No scale is available for B." figureDoi="http://doi.org/10.5281/zenodo.10792059" httpUri="https://zenodo.org/record/10792059/files/figure.png" pageId="6" pageNumber="157">Fig. 2D, E</figureCitation>
|
||
). It gives rise to two tubular extensions, one
|
||
<quantity id="4CF89B527B45AF65644D4598FD1BDF7E" box="[542,642,1511,1538]" metricMagnitude="-4" metricUnit="m" metricValue="8.299999999999999" pageId="6" pageNumber="157" unit="mm" value="0.83">0.83 mm</quantity>
|
||
long and of fairly even width (~
|
||
<quantity id="4CF89B527B45AF6565B94598FBCCDF7D" box="[1002,1109,1511,1537]" metricMagnitude="-4" metricUnit="m" metricValue="1.7" pageId="6" pageNumber="157" unit="mm" value="0.17">0.17 mm</quantity>
|
||
), the other
|
||
<quantity id="4CF89B527B45AF6562824598FAACDF7E" box="[1233,1333,1511,1538]" metricMagnitude="-3" metricUnit="m" metricValue="1.06" pageId="6" pageNumber="157" unit="mm" value="1.06">1.06 mm</quantity>
|
||
long and of variable width (
|
||
<quantity id="4CF89B527B45AF65673B4674FDB0DF59" box="[360,553,1547,1574]" metricMagnitude="-4" metricUnit="m" metricValue="3.55" metricValueMax="4.5" metricValueMin="2.6" pageId="6" pageNumber="157" unit="mm" value="0.355" valueMax="0.45" valueMin="0.26">0.26 to 0.45 mm</quantity>
|
||
). The other structure is located on the final chamber and comprises a swelling ~
|
||
<quantity id="4CF89B527B45AF6566F64650FE95DF36" box="[165,268,1583,1610]" metricMagnitude="-3" metricUnit="m" metricValue="1.2" pageId="6" pageNumber="157" unit="mm" value="1.2">1.20 mm</quantity>
|
||
long that is associated with two tubes (
|
||
<figureCitation id="133B2A327B45AF6564854650FCD6DF35" box="[726,847,1583,1609]" captionStart="FIGURE 2" captionStartId="7.[151,250,1598,1622]" captionTargetBox="[151,1436,181,1574]" captionTargetId="figure-18@7.[151,1436,181,1574]" captionTargetPageId="7" captionText="FIGURE 2. Aschemonella monilis Gooday & Holzmann 2017. A–D, Sequenced specimens. A, Dark specimen attached to nodule; RC1056 (BC026). B, Interior of test fragment with red granellare (after removal of most pieces for sequencing) and dark stercomare; RC0056 (BC001). C, Fragment with two segments; RC0490B (BC010).D, E, RC1900.1 (BC045). D, Fragment with broken segment containing granellare. E, Detail of dome and tubular apertural structure. F, G, Specimens without cytoplasm; RC1900.2 (BC045). F, Complete fragment. G, Detail of apertural structures. No scale is available for B." figureDoi="http://doi.org/10.5281/zenodo.10792059" httpUri="https://zenodo.org/record/10792059/files/figure.png" pageId="6" pageNumber="157">Fig. 2F, G</figureCitation>
|
||
). The longer tube is
|
||
<quantity id="4CF89B527B45AF65626C4650FB0EDF36" box="[1087,1175,1583,1610]" metricMagnitude="-3" metricUnit="m" metricValue="3.5" pageId="6" pageNumber="157" unit="mm" value="3.5">3.5 mm</quantity>
|
||
in length and again of fairly even width (
|
||
<quantity id="4CF89B527B45AF656730462CFD86DF11" box="[355,543,1619,1646]" metricMagnitude="-4" metricUnit="m" metricValue="2.3499999999999996" metricValueMax="2.6" metricValueMin="2.1" pageId="6" pageNumber="157" unit="mm" value="0.235" valueMax="0.26" valueMin="0.21">0.21 to 0.26 mm</quantity>
|
||
), the shorter is ~
|
||
<quantity id="4CF89B527B45AF656487462CFCA1DF12" box="[724,824,1619,1646]" metricMagnitude="-4" metricUnit="m" metricValue="8.5" pageId="6" pageNumber="157" unit="mm" value="0.85">0.85 mm</quantity>
|
||
in length and
|
||
<quantity id="4CF89B527B45AF656586462CFB12DF12" box="[981,1163,1619,1646]" metricMagnitude="-4" metricUnit="m" metricValue="4.45" metricValueMax="5.3" metricValueMin="3.5999999999999996" pageId="6" pageNumber="157" unit="mm" value="0.445" valueMax="0.53" valueMin="0.36">0.36 to 0.53 mm</quantity>
|
||
wide. The longer tube is relatively smooth, but the shorter tube has a lumpy, very uneven surface and the associated swelling has a similarly irregular shape. Several short, pustule-like tubes ~
|
||
<quantity id="4CF89B527B45AF65649A46E4FCB7DFCA" box="[713,814,1691,1718]" metricMagnitude="-4" metricUnit="m" metricValue="1.7999999999999998" pageId="6" pageNumber="157" unit="mm" value="0.18">0.18 mm</quantity>
|
||
long and of similar width, are present elsewhere on the final chamber of this specimen. Similar apertural features (swellings, long tubes and clusters of short, pustule-like tubes) were described by
|
||
<bibRefCitation id="EF914B467B45AF6567E6469CFD3CDF81" author="Gooday, A. J. & Holzmann, M. & Caulle, C. & Goineau, A. & Jones, D. O. B. & Kamenskaya, O. E. & Simon-Lledo, E. & Weber, A. A. - T. & Pawlowski, J." box="[437,677,1763,1790]" pageId="6" pageNumber="157" pagination="479 - 499" refId="ref21702" refString="Gooday, A. J., Holzmann, M., Caulle, C., Goineau, A., Jones, D. O. B., Kamenskaya, O. E., Simon-Lledo, E., Weber, A. A. - T. & Pawlowski, J. (2017 b) New species of the xenophyophore genus Aschemonella (Rhizaria, Foraminifera) from areas of the abyssal eastern Pacific licensed for polymetallic nodule exploration. Zoological Journal of the Linnean Society, 182 (3), 479 - 499. https: // doi. org / 10.1093 / zoolinnean / zlx 052" type="journal article" year="2017">
|
||
Gooday
|
||
<emphasis id="B974EAA57B45AF656446469BFDDFDF81" box="[533,582,1763,1789]" italics="true" pageId="6" pageNumber="157">et al</emphasis>
|
||
. (2017b
|
||
</bibRefCitation>
|
||
,
|
||
<figureCitation id="133B2A327B45AF6564E2469CFD6FDF81" box="[689,758,1763,1789]" captionStart="FIGURE 3" captionStartId="9.[151,250,1888,1912]" captionTargetBox="[151,1436,273,1865]" captionTargetId="figure-56@9.[151,1436,273,1865]" captionTargetPageId="9" captionText="FIGURE 3. Aschemonella tani Gooday & Holzmann sp. nov.; holotype RC1555 (BC036). A, Shipboard photograph showing grouping of structures on nodule summit; numbers 1–3 identify parts illustrated in other photographs. B–F, Laboratory photographs. B, Part 1 from top of nodule. C, Part 2. D, E, Part 3 viewed from different sides. F, Detail of Part 3." figureDoi="http://doi.org/10.5281/zenodo.10792061" httpUri="https://zenodo.org/record/10792061/files/figure.png" pageId="6" pageNumber="157">Figs 3</figureCitation>
|
||
,
|
||
<figureCitation id="133B2A327B45AF6564A8469CFC92DF81" box="[763,779,1763,1789]" captionStart="FIGURE 4" captionStartId="10.[151,250,1168,1192]" captionTargetBox="[151,1436,181,1144]" captionTargetId="figure-20@10.[151,1436,181,1144]" captionTargetPageId="10" captionText="FIGURE 4. Aschemonella tani Gooday & Holzmann sp. nov., laboratory photographs of fragments from holotype; RC1555 (BC036). A, Detail of Part 1 from summit of nodule showing dark stercomare seen through wall of test. B, Part 2 broken open to expose stercomare. C, Detail of stercomare in Part 2. D, Granellare strands." figureDoi="http://doi.org/10.5281/zenodo.10792063" httpUri="https://zenodo.org/record/10792063/files/figure.png" pageId="6" pageNumber="157">4</figureCitation>
|
||
therein).
|
||
</paragraph>
|
||
<paragraph id="8BBF36B77B45AF6566944778FB05DEA9" blockId="6.[151,1437,827,2006]" pageId="6" pageNumber="157">
|
||
<taxonomicName id="4C004D347B45AF6566944778FE24DE5D" box="[199,445,1799,1825]" class="Monothalamea" family="Syringamminidae" genus="Aschemonella" kingdom="Chromista" pageId="6" pageNumber="157" phylum="Foraminifera" rank="species" species="monilis">
|
||
<emphasis id="B974EAA57B45AF6566944778FE24DE5D" box="[199,445,1799,1825]" italics="true" pageId="6" pageNumber="157">Aschemonella monilis</emphasis>
|
||
</taxonomicName>
|
||
is widely distributed across an area spanning some
|
||
<quantity id="4CF89B527B45AF6562534778FBF4DE5D" box="[1024,1133,1799,1825]" metricMagnitude="6" metricUnit="m" metricValue="3.8" pageId="6" pageNumber="157" unit="km" value="3800.0">3,800 km</quantity>
|
||
, being common in samples from the UK-1 license area (adjacent to the OMS area), as well as present in the Russian area in the central CCZ and APEI 4, a protected area in the western CCZ (
|
||
<bibRefCitation id="EF914B467B45AF6564CE4730FC16DE15" author="Gooday, A. J. & Holzmann, M. & Caulle, C. & Goineau, A. & Kamenskaya, O. E. & Weber, A. A. - T. & Pawlowski, J." box="[669,911,1871,1898]" pageId="6" pageNumber="157" pagination="106 - 116" refId="ref21609" refString="Gooday, A. J., Holzmann, M., Caulle, C., Goineau, A., Kamenskaya, O. E., Weber, A. A. - T. & Pawlowski, J. (2017 a) Giant foraminifera (xenophyophores) are exceptionally diverse in parts of the abyssal eastern Pacific where seabed mining is likely to occur. Biological Conservation, 207, 106 - 116. https: // doi. org / 10.1016 / j. biocon. 2017.01.006" type="journal article" year="2017">
|
||
Gooday
|
||
<emphasis id="B974EAA57B45AF6564AC472FFCA9DE15" box="[767,816,1871,1897]" italics="true" pageId="6" pageNumber="157">et al</emphasis>
|
||
., 2017a
|
||
</bibRefCitation>
|
||
,b, 2020a). In the latter case, the three recorded specimens were morphologically atypical but genetically identical to those from the eastern CCZ.
|
||
<taxonomicName id="4C004D347B45AF6562AC470CFF70DECD" class="Monothalamea" family="Syringamminidae" genus="Aschemonella" kingdom="Chromista" pageId="6" pageNumber="157" phylum="Foraminifera" rank="species" species="monilis">
|
||
<emphasis id="B974EAA57B45AF6562AC470CFF70DECD" italics="true" pageId="6" pageNumber="157">Aschemonella monilis</emphasis>
|
||
</taxonomicName>
|
||
is also the dominant faunal component in seafloor photographs from the southwestern part of APEI 6 (now APEI 3), located in the northeastern CCZ (
|
||
<bibRefCitation id="EF914B467B45AF65642547C4FCFEDEA9" author="Gooday, A. J. & Holzmann, M. & Caulle, C. & Goineau, A. & Jones, D. O. B. & Kamenskaya, O. E. & Simon-Lledo, E. & Weber, A. A. - T. & Pawlowski, J." box="[630,871,1979,2006]" pageId="6" pageNumber="157" pagination="479 - 499" refId="ref21702" refString="Gooday, A. J., Holzmann, M., Caulle, C., Goineau, A., Jones, D. O. B., Kamenskaya, O. E., Simon-Lledo, E., Weber, A. A. - T. & Pawlowski, J. (2017 b) New species of the xenophyophore genus Aschemonella (Rhizaria, Foraminifera) from areas of the abyssal eastern Pacific licensed for polymetallic nodule exploration. Zoological Journal of the Linnean Society, 182 (3), 479 - 499. https: // doi. org / 10.1093 / zoolinnean / zlx 052" type="journal article" year="2017">
|
||
Gooday
|
||
<emphasis id="B974EAA57B45AF65648447C3FC90DEA9" box="[727,777,1979,2005]" italics="true" pageId="6" pageNumber="157">et al</emphasis>
|
||
., 2017b
|
||
</bibRefCitation>
|
||
; Simon-Lledó
|
||
<emphasis id="B974EAA57B45AF65625E47C3FBA7DEA9" box="[1037,1086,1979,2005]" italics="true" pageId="6" pageNumber="157">et al</emphasis>
|
||
., 2019).
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |