176 lines
14 KiB
XML
176 lines
14 KiB
XML
<document id="D9B962B4246C74D067926DD1E26AB5C4" ID-DOI="10.3897/mycokeys.107.125549" ID-publisher-id="125549" URI-arpha="3EA0E723-E6FC-58B0-8491-ED4CC2FBAB87" article-type="research-article" checkinTime="1723223129036" checkinUser="pensoft" docAuthor="Tedersoo, Leho, Magurno, Franco, Alkahtani, Saad & Mikryukov, Vladimir" docDate="2024" docId="4E815FED51755ABFBDE7D2E8BCEEDB04" docLanguage="en" docName="MycoKeys 107: 249-271" docOrigin="MycoKeys 107" docSource="https://mycokeys.pensoft.net/article/125549/download/xml/" docStyle="DocumentStyle:PensoftTaxPub.0000.journal_article.mycokeys" docStyleName="PensoftTaxPub.0000.journal_article.mycokeys" docTitle="Riederbergales Tedersoo 2024, ord. nov." docType="treatment" docVersion="1" dtd-version="3.0" lastPageNumber="271" masterDocId="3EA0E723E6FC58B08491ED4CC2FBAB87" masterDocTitle="Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes)" masterLastPageNumber="271" masterPageNumber="249" pageNumber="249" updateTime="1723223268898" updateUser="pensoft">
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<mods:mods id="82896A4A82267CFB8905952195BA2091" xmlns:mods="http://www.loc.gov/mods/v3">
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<mods:titleInfo id="402438DC1E3024D9CDA26795F8958678">
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<mods:title id="F1484B36850A2A2F8DD7F1C67B19D01F">Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes)</mods:title>
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</mods:titleInfo>
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<mods:name id="1CB0FDE141E0CACE519CF4D2A73D131D" type="personal">
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<mods:role id="1F32ABE89ACFA4076D058223B6E3B95C">
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<mods:roleTerm id="30AB12582E01265496CD10ABE6F569DC">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="734D4D099DD401090BFAD7552E4F32C1">Tedersoo, Leho</mods:namePart>
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<mods:affiliation id="5A2201915578C43741293C994E98B301">Mycology and Microbiology Center, University of Tartu, 2 Liivi, 50409 Tartu, Estonia & Department of Zoology, College of Science, King Saud University, 12371 Riyadh, Saudi Arabia</mods:affiliation>
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</mods:name>
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<mods:name id="B4EE556672ACD922F73677612C3DC826" type="personal">
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<mods:role id="98B61C820C7BDBE5C63211B6FA2192F4">
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<mods:roleTerm id="2D94462462345333D6EAD9E20CD07BE7">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="23B6ED78F8F8BD489079F30318353ED7">Magurno, Franco</mods:namePart>
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<mods:nameIdentifier id="328F9C355190EB7C74992232322AEB39" type="ORCID">0000-0002-3117-8149</mods:nameIdentifier>
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<mods:affiliation id="8EA23D92AB72B00942B229BE336134CA">Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice, Jagiellońska 28, 40 - 032 Katowice, Poland</mods:affiliation>
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</mods:name>
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<mods:name id="B385F80E3D21F3F4BEDD0022F770669B" type="personal">
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<mods:role id="38E8A4F7654F6533275CF4B18C16C8CD">
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<mods:roleTerm id="AAC6E4A69B6F0F7A7836602896F24F6E">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="8610DEDA519C5C4119FD538C1849F74E">Alkahtani, Saad</mods:namePart>
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<mods:nameIdentifier id="8C7696B68D0628F97DEED41F38904BB4" type="ORCID">0000-0001-7381-5110</mods:nameIdentifier>
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<mods:affiliation id="9B235A37B545DC8576F0973FFDD72E55">Department of Zoology, College of Science, King Saud University, 12371 Riyadh, Saudi Arabia</mods:affiliation>
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</mods:name>
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<mods:name id="11863D3AFE47A75DD419DD809D5020ED" type="personal">
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<mods:role id="9E7CC05BDBBC63FCDECC00599C8CFE58">
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<mods:roleTerm id="FB88BC41202DDF7DE39982271D26471C">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="B6DB6A32C521AC84DA59F4707CF2E3AE">Mikryukov, Vladimir</mods:namePart>
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<mods:nameIdentifier id="AE55EAF3DD0804DF974AD497EBF884EF" type="ORCID">0000-0003-2786-2690</mods:nameIdentifier>
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<mods:affiliation id="46D9FD52DACBA873AC1C9381B8C199AB">Mycology and Microbiology Center, University of Tartu, 2 Liivi, 50409 Tartu, Estonia</mods:affiliation>
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</mods:name>
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<mods:typeOfResource id="BC82ADE42E291A65453158C2DAC8260D">text</mods:typeOfResource>
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<mods:relatedItem id="21A7A9CE2F571795DC7BB663B20EA85F" type="host">
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<mods:titleInfo id="C3B086A87782A3D990C96E590A239C83">
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<mods:title id="B629C1CD0F20958D4D689F332E2D1DF6">MycoKeys</mods:title>
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</mods:titleInfo>
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<mods:part id="35A971AC4E3E1965B35F299E42B59E59">
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<mods:date id="6D5CA3E6E630429BE2B4E4C72944A4BF">2024</mods:date>
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<mods:detail id="EB5A2B544F4B5DE5D78643B6E91B104C" type="pubDate">
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<mods:number id="B919313DC0A067C40BE16227F79266D7">2024-08-09</mods:number>
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</mods:detail>
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<mods:detail id="9E993559EAD1B92474990B86C1E24EA7" type="volume">
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<mods:number id="90254865EA73B75CBC983308896D7074">107</mods:number>
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</mods:detail>
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<mods:extent id="A7C0356D49AB16FCD75B800FFAC1A545" unit="page">
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<mods:start id="5499FE0873E10AFFA0A9064CE6F281DB">249</mods:start>
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<mods:end id="9C228629B1C88C58449FFD512E0007B7">271</mods:end>
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</mods:extent>
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</mods:part>
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</mods:relatedItem>
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<mods:classification id="619E8C509F12BFDF98A74F86386981F4">journal article</mods:classification>
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<mods:identifier id="AA4C13320E86631C630A24AF551A5A85" type="DOI">10.3897/mycokeys.107.125549</mods:identifier>
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</mods:mods>
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<treatment id="4E815FED51755ABFBDE7D2E8BCEEDB04" ID-arpha="4E815FED-5175-5ABF-BDE7-D2E8BCEEDB04" ID-mycobank="853612" LSID="urn:lsid:plazi:treatment:4E815FED51755ABFBDE7D2E8BCEEDB04" httpUri="http://treatment.plazi.org/id/4E815FED51755ABFBDE7D2E8BCEEDB04">
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<subSubSection id="82F3628E88AE45073CE534C0EC4D2732" type="nomenclature">
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<paragraph id="530E011C2FD95873535E0F11ACB61C72">
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<taxonomicName id="2B646DA5C044FE93D4221931B53EF938" authority="Tedersoo" authorityName="Tedersoo" authorityYear="2024" kingdom="Fungi" order="Riederbergales" rank="order" status="ord. nov.">Riederbergales Tedersoo</taxonomicName>
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<taxonomicNameLabel id="B527D4150F18BF290166EFB2AC969987" rank="order">ord. nov.</taxonomicNameLabel>
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</paragraph>
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</subSubSection>
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<subSubSection id="SECID0E63BK" type="Type family">
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<paragraph id="E2770C08E1B9F07A1127E55E3EDAA9AB">
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<heading id="3AC938359F9D5802FC5EFEA720EE544D" reason="title">
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<typeStatus id="A18884EFF6E73DA2D3E848620EE0E30D">Type</typeStatus>
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family.
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</heading>
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</paragraph>
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<paragraph id="8C437D3936700BE34FDA37CDC0EFF7E1">
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<taxonomicName id="FAB6BABB0D5D8ABFFE066579017F4EDE" authority="Tedersoo" authorityName="Tedersoo" authorityYear="2024" family="Riederbergaceae" rank="family" status="fam. nov.">Riederbergaceae Tedersoo</taxonomicName>
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.
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</paragraph>
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</subSubSection>
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<subSubSection id="SECID0EK4BK" type="description">
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<paragraph id="D01D79D9EA3E7AC2E01CD6DCFC73DB3A">
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<heading id="1D521BA221DFC8B6CD89F10B2D25334B" reason="title">Description.</heading>
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</paragraph>
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<paragraph id="1AE9B939C7EC1D8663C450051738A954">
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Covers the monophyletic group in
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<taxonomicName id="AFAF4C5C9257EEDD9735833BBBC69A0C" class="Endogonomycetes" higherTaxonomySource="CoL,GBIF" kingdom="Fungi" phylum="Mucoromycota" rank="class">Endogonomycetes</taxonomicName>
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(Fig.
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<figureCitation id="59BA18883DDC6E08EC17D98CC5A90C58" captionStart="Figure 2" captionStartId="F2" captionText="Figure 2. Phylogenetic position of genera and genus-level groups of Endogonomycetes based on Maximum Likelihood analysis of SSU- 5.8 S-LSU sequences. The clades are collapsed, with the number of sequences included in parentheses. Question marks above branches indicate low ultra-rapid bootstrap support (< 95). Orders are highlighted in different colours. The uncollapsed phylogram is given in Suppl. material 3." figureDoi="10.3897/mycokeys.107.125549.figure2" httpUri="https://binary.pensoft.net/fig/1111389">2</figureCitation>
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). Phylogenetically delimited as the least inclusive clade covering sequence accessions EUK 1602903, EUK 1603115, EUK 1602258, EUK 1602253, EUK 1602251 and EUK 1104709 (Suppl. material
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<xref id="C1C86AAE40B239E37E77E63CDE268DBD" ref-type="supplementary-material" rid="S3">3</xref>
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).
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</paragraph>
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</subSubSection>
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<subSubSection id="SECID0E54BK" type="notes">
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<paragraph id="2C5D1FABF6A4C578F104520ADEBCFD74">
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<heading id="234E4E68829F0FDDA28F5EB319E4ADC7" reason="title">Notes.</heading>
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</paragraph>
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<paragraph id="9C30DE2FB881C38C20F9DA2535F06DE6">
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Recognised based on
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<abbrev id="ABBRID0EE5BK" xlink_title="environmental DNA">eDNA</abbrev>
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sequences only. Currently includes Riederbergaceae and four additional potentially family-level taxa represented by sequences EUK 1100540 (bog peat soil in Svartberget,
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<collectingCountry id="5F8A19C7CE254C9B870A6EF5D1C93876" name="Sweden">Sweden</collectingCountry>
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,
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<named-content content-type="dwc:verbatimCoordinates" id="NCID0EQ5BK" specific-use="{"type":"Point","coordinates":[19.760000,64.240000]}">
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<geoCoordinate id="750AF7C3854EE6C312AD8C11CBB10980" degrees="64.24" direction="north" orientation="latitude" precision="555" value="64.24">64.24 ° N</geoCoordinate>
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,
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<geoCoordinate id="23EA466EB6C6BF49600C60DB1C058DBE" degrees="19.76" direction="east" orientation="longitude" precision="555" value="19.76">19.76 ° E</geoCoordinate>
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</named-content>
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); EUK 1602254 (
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<abbrev id="ABBRID0EV5BK" xlink_title="Global Soil Mycobiome consortium">GSMc</abbrev>
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plot
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<collectionCode id="625C1EBF8A7FAC1B145F17ED036AEB6E" country="Switzerland" lsid="urn:lsid:biocol.org:col:15706" name="Conservatoire et Jardin botaniques de la Ville de Genève" type="Herbarium">G</collectionCode>
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5826,
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<taxonomicName id="80674B612EE697F5D1358C6B27339F6A" class="Magnoliopsida" family="Rosaceae" genus="Malus" kingdom="Plantae" order="Rosales" phylum="Tracheophyta" rank="species" species="domestica">
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<emphasis id="BA12B6DEA58D4ED49E3FD68FEC18047E" italics="true">Malus domestica</emphasis>
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</taxonomicName>
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orchard in Tabivere,
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<collectingCountry id="78D6A7F67A9A6B51EB3EB85274AEE913" name="Estonia">Estonia</collectingCountry>
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,
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<named-content content-type="dwc:verbatimCoordinates" id="NCID0EH6BK" specific-use="{"type":"Point","coordinates":[26.615750,58.542860]}">
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<geoCoordinate id="DFE36B604370BEFC97A1A3D1CFEE62BC" degrees="58.54286" direction="north" orientation="latitude" precision="1" value="58.54286">58.54286 ° N</geoCoordinate>
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,
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<geoCoordinate id="D6A714360B68FFF396115A8362BAC940" degrees="26.61575" direction="east" orientation="longitude" precision="1" value="26.61575">26.61575 ° E</geoCoordinate>
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</named-content>
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); EUK 1602251, EUK 1602253 and EUK 1602257 (all
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<abbrev id="ABBRID0EM6BK" xlink_title="Global Soil Mycobiome consortium">GSMc</abbrev>
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plot
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<collectionCode id="65F1066E4BE9DDBEEF6DCAAFE9A478D5" country="Switzerland" lsid="urn:lsid:biocol.org:col:15706" name="Conservatoire et Jardin botaniques de la Ville de Genève" type="Herbarium">G</collectionCode>
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5828,
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<collectingCountry id="3C820654B4BFE7D0F910CF3D7A1CC335" name="Estonia">Estonia</collectingCountry>
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,
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<taxonomicName id="5B27148DF0752D0C782DA82F25A5D911" class="Magnoliopsida" family="Rosaceae" genus="Malus" kingdom="Plantae" order="Rosales" phylum="Tracheophyta" rank="species" species="domestica">
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<emphasis id="02B90A61260209D1BA7CD24595F3056C" italics="true">Malus domestica</emphasis>
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</taxonomicName>
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orchard soil in Mooste,
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<collectingCountry id="C93AE5993A1C2BBF5A088637C9023C01" name="Estonia">Estonia</collectingCountry>
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,
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<named-content content-type="dwc:verbatimCoordinates" id="NCID0EEACK" specific-use="{"type":"Point","coordinates":[27.196420,58.153350]}">
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<geoCoordinate id="C1FFA21AA88A7A1C9097227A183033FE" degrees="58.15335" direction="north" orientation="latitude" precision="1" value="58.15335">58.15335 ° N</geoCoordinate>
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,
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<geoCoordinate id="11ECF6DBCB42CA8CBA0D663DC80A3ABE" degrees="27.19642" direction="east" orientation="longitude" precision="1" value="27.19642">27.19642 ° E</geoCoordinate>
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</named-content>
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). Sequences EUK 0031975 (
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<abbrev id="ABBRID0EJACK" xlink_title="Global Soil Mycobiome consortium">GSMc</abbrev>
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plot
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<collectionCode id="1DBD988C71335C08CB8FD459A5EF7A4E" country="Sweden" lsid="urn:lsid:biocol.org:col:15668" name="Department of Botany, Swedish Museum of Natural History" type="Herbarium">S</collectionCode>
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1082,
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<taxonomicName id="F41E0003E80CCB0EEE3101301C868270" class="Pinopsida" family="Araucariaceae" genus="Araucaria" kingdom="Plantae" order="Pinales" phylum="Tracheophyta" rank="species" species="araucana">
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<emphasis id="A865B76E2A7B49C6EBB86CEFEF37CE4D" italics="true">Araucaria araucana</emphasis>
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</taxonomicName>
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forest, Nahuelbuta,
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<collectingCountry id="1B20C1284CFEAED0E541B5CEF69ADAC2" name="Chile">Chile</collectingCountry>
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,
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<named-content content-type="dwc:verbatimCoordinates" id="NCID0E2ACK" specific-use="{"type":"Point","coordinates":[73.003800,37.789850]}">
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-
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<geoCoordinate id="22DE061C74E812E18ECCF4FC54775705" degrees="37.78985" direction="north" orientation="latitude" precision="1" value="37.78985">37.78985 ° N</geoCoordinate>
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, -
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<geoCoordinate id="C4FD0E091ED32196BC90FB0FD0245B9C" degrees="73.0038" direction="east" orientation="longitude" precision="5" value="73.0038">73.0038 ° E</geoCoordinate>
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</named-content>
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) and EUK 1217433 (
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<abbrev id="ABBRID0EABCK" xlink_title="Global Soil Mycobiome consortium">GSMc</abbrev>
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plot
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<collectionCode id="D2832C2BC8EB04643138662BE68AADB5" country="Switzerland" lsid="urn:lsid:biocol.org:col:15706" name="Conservatoire et Jardin botaniques de la Ville de Genève" type="Herbarium">G</collectionCode>
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4777, maritime grassland (saltmarsh) soil in Härs-hämani,
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<collectingCountry id="07068ECDC458827442A44B24F562266B" name="Estonia">Estonia</collectingCountry>
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,
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<named-content content-type="dwc:verbatimCoordinates" id="NCID0EHBCK" specific-use="{"type":"Point","coordinates":[23.927200,59.331030]}">
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<geoCoordinate id="638E3843DBEE03469DE6B13FD4C452E4" degrees="59.33103" direction="north" orientation="latitude" precision="1" value="59.33103">59.33103 ° N</geoCoordinate>
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,
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<geoCoordinate id="FEDEB51621B6F54D2384EDEF3A8298BF" degrees="23.92720" direction="east" orientation="longitude" precision="1" value="23.9272">23.92720 ° E</geoCoordinate>
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</named-content>
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) represent additional, monospecific, potentially family-level groups not included in the phylograms due to the lack of
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<collectionCode id="0DE6C89371C45A2EA2DE87F3F9AAF3A7" country="USA" httpUri="http://biocol.org/urn:lsid:biocol.org:col:15590" lsid="urn:lsid:biocol.org:col:15590" name="Louisiana State University - Herbarium" type="Herbarium">LSU</collectionCode>
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sequences.
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</paragraph>
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</subSubSection>
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</treatment>
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</document> |