170 lines
16 KiB
XML
170 lines
16 KiB
XML
<document id="41AFC66B09BF11E039C09113CEEE5708" ID-DOI="10.1099/ijsem.0.003808" ID-GBIF-Dataset="e70e39cf-ffb6-4178-989c-6a42a3c0c3bf" ID-ISSN="1466-5034" ID-Zenodo-Dep="3745026" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_requiresApprovalFor="existingObjects,plazi" IM.taxonomicNames_approvedBy="felipe" checkinTime="1586370000602" checkinUser="felipe" docAuthor="Saygin, Hayrettin, Nouioui, Imen, Ay, Hilal, Guven, Kiymet, Cetin, Demet, Klenk, Hans-Peter, Goodfellow, Michael & Sahin, Nevzat" docDate="2020" docId="03F78416222DFFA53C16FA72FD67FB18" docLanguage="en" docName="IntJouSysEvoMicro.70.636-647.pdf.imf" docOrigin="International Journal of Systematic and Evolutionary Microbiology 70 (1)" docStyle="DocumentStyle:C64F0A4F4C66F6FC2AD4ED89351C6242.3:IntJSystEvolMicrobiol.2017-.journal_article" docStyleId="C64F0A4F4C66F6FC2AD4ED89351C6242" docStyleName="IntJSystEvolMicrobiol.2017-.journal_article" docStyleVersion="3" docTitle="Nonomuraea longispora Saygin, Nouioui, Ay, Guven, Cetin, Klenk, Goodfellow & Sahin, 2020, SP. NOV." docType="treatment" docVersion="9" lastPageNumber="645" masterDocId="FFCEFC6E2225FFAC3F2AFFEDFF84FF86" masterDocTitle="Polyphasic classification of Nonomuraea strains isolated from the Karakum Desert and description of Nonomuraea deserti sp. nov., Nonomuraea diastatica sp. nov., Nonomuraea longispora sp. nov. and Nonomuraea mesophila sp. nov." masterLastPageNumber="647" masterPageNumber="636" pageNumber="644" updateTime="1698736564375" updateUser="plazi" zenodo-license-document="CC-BY-4.0">
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<mods:title id="040B0FAAFEE6C9C05EF17C3174FDF0D9">Polyphasic classification of Nonomuraea strains isolated from the Karakum Desert and description of Nonomuraea deserti sp. nov., Nonomuraea diastatica sp. nov., Nonomuraea longispora sp. nov. and Nonomuraea mesophila sp. nov.</mods:title>
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<mods:namePart id="885BA18FEB3879E0FA3BCBB3CD66A2B9">Saygin, Hayrettin</mods:namePart>
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<mods:roleTerm id="59927A23061724BC404FCA55CBDD62B0">Author</mods:roleTerm>
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<mods:namePart id="BAECCEA92BFA48A34CDA4EB813BA9E6A">Nouioui, Imen</mods:namePart>
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<mods:namePart id="0627A758BBD64F6D50934C1AACA243DB">Ay, Hilal</mods:namePart>
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<mods:namePart id="32CB09783EE54E2E1DDA20D4F279E430">Guven, Kiymet</mods:namePart>
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<mods:roleTerm id="40802E809E3F6839120016CE9600A8FA">Author</mods:roleTerm>
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<mods:namePart id="265BEF854020744CE6DF1F479068E7DA">Cetin, Demet</mods:namePart>
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<mods:namePart id="1E86F8BAB3E18A9A3F96377D727E65A1">Klenk, Hans-Peter</mods:namePart>
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<mods:namePart id="E992AA373F58FE4732BEE865CACCAABF">Goodfellow, Michael</mods:namePart>
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<mods:name id="2151A817E92A222A08CCF6949AA7C1DC" type="personal">
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<mods:roleTerm id="8FF4368853129816779122F254A975A2">Author</mods:roleTerm>
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<mods:namePart id="9BC5E91DC5064CD2A3F2FA1CAB7E33EB">Sahin, Nevzat</mods:namePart>
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<mods:title id="41D12DB8B63A50FA7EAB812BB5F3976D">International Journal of Systematic and Evolutionary Microbiology</mods:title>
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<mods:part id="E2582C1D11550AB0C426513509B1C0DB">
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<mods:date id="E1B89E5D65E7FC0790FA009894131A0C">2020</mods:date>
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<mods:number id="103CEF98A987F0B43251AAC85EDDE033">2020-02-03</mods:number>
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<mods:detail id="86A61D92AC7EF103796AF93BBAD82C0F" type="volume">
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<mods:number id="5B9189F61BDF959411552E5AF1AB6695">70</mods:number>
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<mods:start id="0917442AC72974575664D8BCA71B8743">636</mods:start>
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<mods:classification id="46EBDDAC14F68D5678D65E842AF4CDD7">journal article</mods:classification>
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<mods:identifier id="744C978F5957A715914CA5BC9BDF8C53" type="DOI">10.1099/ijsem.0.003808</mods:identifier>
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<mods:identifier id="E52394E559AFBAD6505A825C9C19499C" type="GBIF-Dataset">e70e39cf-ffb6-4178-989c-6a42a3c0c3bf</mods:identifier>
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<mods:identifier id="AA4295E51F03F6D38E19DCDDDF70B281" type="ISSN">1466-5034</mods:identifier>
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<mods:identifier id="601CE0A284E6F9A71079EACFE2F53163" type="Zenodo-Dep">3745026</mods:identifier>
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<treatment id="03F78416222DFFA53C16FA72FD67FB18" ID-DOI="http://doi.org/10.5281/zenodo.3809601" ID-GBIF-Taxon="163540093" ID-Zenodo-Dep="3809601" LSID="urn:lsid:plazi:treatment:03F78416222DFFA53C16FA72FD67FB18" httpUri="http://treatment.plazi.org/id/03F78416222DFFA53C16FA72FD67FB18" lastPageId="9" lastPageNumber="645" pageId="8" pageNumber="644">
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<subSubSection id="C344668B222DFFA43C16FA72FC34FA67" pageId="8" pageNumber="644" type="nomenclature">
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<paragraph id="8BE13500222DFFA43C16FA72FC34FA67" blockId="8.[828,1466,1439,1505]" pageId="8" pageNumber="644">
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<heading id="D0A9826C222DFFA43C16FA72FC34FA67" allCaps="true" bold="true" centered="true" fontSize="12" level="2" pageId="8" pageNumber="644" reason="3">
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<emphasis id="B92AE912222DFFA43C16FA72FC34FA67" bold="true" pageId="8" pageNumber="644">
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DESCRIPTION OF
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<taxonomicName id="4C5E4E83222DFFA43B1EFA72FA3EFA3A" box="[1076,1466,1439,1468]" class="Actinobacteridae" family="Streptosporangiaceae" genus="Nonomuraea" higherTaxonomySource="CoL" kingdom="Bacteria" order="Actinomycetales" pageId="8" pageNumber="644" phylum="Actinobacteria" rank="species" species="longispora" status="sp. nov.">
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<emphasis id="B92AE912222DFFA43B1EFA72FA3EFA3A" bold="true" box="[1076,1466,1439,1468]" italics="true" pageId="8" pageNumber="644">NONOMURAEA LONGISPORA</emphasis>
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</taxonomicName>
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<taxonomicNameLabel id="A2195469222DFFA43C16FA29FC34FA67" box="[828,944,1476,1505]" pageId="8" pageNumber="644">SP. NOV.</taxonomicNameLabel>
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</emphasis>
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</heading>
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</paragraph>
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</subSubSection>
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<subSubSection id="C344668B222DFFA53C16FA1CFD8BFC50" lastPageId="9" lastPageNumber="645" pageId="8" pageNumber="644" type="description">
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<paragraph id="8BE13500222DFFA43C16FA1CFA00F9A1" blockId="8.[828,1467,1519,1575]" pageId="8" pageNumber="644">
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<taxonomicName id="4C5E4E83222DFFA43C16FA1CFBB1F98F" box="[828,1077,1521,1545]" class="Actinobacteridae" family="Streptosporangiaceae" genus="Nonomuraea" higherTaxonomySource="CoL" kingdom="Bacteria" order="Actinomycetales" pageId="8" pageNumber="644" phylum="Actinobacteria" rank="species" species="longispora">
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<emphasis id="B92AE912222DFFA43C16FA1CFBB1F98F" box="[828,1077,1521,1545]" italics="true" pageId="8" pageNumber="644">Nonomuraea longispora</emphasis>
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</taxonomicName>
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(lon.gi.spo
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<emphasis id="B92AE912222DFFA43B81FA02FB35F98F" bold="true" box="[1195,1201,1519,1545]" italics="true" pageId="8" pageNumber="644">′</emphasis>
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ra. L. adj.
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<emphasis id="B92AE912222DFFA43A3DFA1CFADEF98F" box="[1303,1370,1521,1545]" italics="true" pageId="8" pageNumber="644">longus</emphasis>
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long; Gr. fem. n.
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<emphasis id="B92AE912222DFFA43CA1F9FDFC47F9A1" box="[907,963,1552,1575]" italics="true" pageId="8" pageNumber="644">spora</emphasis>
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spore; N.L. fem.
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<taxonomicName id="4C5E4E83222DFFA43B53F9FDFB7BF9A1" box="[1145,1279,1551,1575]" class="Actinobacteridae" family="Streptosporangiaceae" genus="Nonomuraea" higherTaxonomySource="CoL" kingdom="Bacteria" order="Actinomycetales" pageId="8" pageNumber="641" phylum="Actinobacteria" rank="species" species="longispora">
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n.
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<emphasis id="B92AE912222DFFA43BBEF9E2FB7BF9A1" box="[1172,1279,1551,1575]" italics="true" pageId="8" pageNumber="644">longispora</emphasis>
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</taxonomicName>
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long spore).
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</paragraph>
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<paragraph id="8BE13500222DFFA53C16F9D0FD8BFC50" blockId="8.[828,1467,1597,1959]" lastBlockId="9.[121,760,185,982]" lastPageId="9" lastPageNumber="645" pageId="8" pageNumber="644">
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Aerobic, Gram-stain-positive, non-motile
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<taxonomicName id="4C5E4E83222DFFA43A36F9D0FA3EF9D3" box="[1308,1466,1597,1621]" class="Actinobacteria" kingdom="Bacteria" pageId="8" pageNumber="645" phylum="Actinobacteria" rank="class">actinobacteria</taxonomicName>
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that
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<taxonomicName id="4C5E4E83222DFFA43C41F9B1FB99F9F2" box="[875,1053,1628,1652]" form="extensively" pageId="8" pageNumber="644" rank="form">form extensively</taxonomicName>
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branched substrate and aerial mycelia. Aerial hyphae differentiated into long straight spore chains with a smooth surfaces. Good growth occurs on ISP 2, ISP 4 agar, modified Bennett’s agar, tryptic soy agar and nutrient agar and moderately well on Czapek’s, ISP 3, 5, 6 and 7 agar. Substrate mycelia produce a range of pigments (cream, brown, reddish black or claret red). Melanoid pigments are not produced on ISP6 agar. Red or light pink diffusible pigments are produced on ISP 2, ISP 3 and modified Bennett’s agar. Grow from 20–37 °C (optimum, 28 °C), from pH 6.0–9.0 (optimum, pH 7.0), in the presence of NaCl up to of 3 % (w/v) and variable for 4 % NaCl. Hydrolyses aesculin and arbutin but does not produce H
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S and does not hydrolyse allantoin or urea. Nitrate reduction is variable. Gelatin, hypoxanthine, starch and xylan are degraded, but not adenine, casein, chitin, guanine, Tweens 40 or 80 or xanthine. Cellobiose, dextran, D-glucose, D-mannitol, D-mannose, melibiose and raffinose are utilized as sole carbon and energy sources, but not L-arabinose, D-fructose, D-galactose, L-glutamine,
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<emphasis id="B92AE912222CFFA53E84FE5CFE58FE4E" box="[430,476,433,456]" italics="true" pageId="9" pageNumber="645">myo</emphasis>
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-inositol, inulin, lactose, melezitose, L-rhamnose, D-sorbitol, L-sorbose, sodium succinate, sucrose or xylitol. L-Alanine, L-arginine, L-asparagine, L-cysteine, glycine, L-hydroxyproline, L-methionine, L-phenylalanine, L-proline, L-serine, L-tyrosine and L-valine are utilized as sole nitrogen sources, but not L-histidine. The predominant menaquinone is MK-9(H
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<subScript id="17DA3745222CFFA53FF0FD75FF66FD20" attach="left" box="[218,226,664,678]" fontSize="6" pageId="9" pageNumber="645">4</subScript>
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). The polar lipids profile includes diphosphatidylglycerol, phosphatidylmonomethylethanolamine, phosphatidylethanolamine, hydroxy-phosphatidylethanolamine, dihydroxy-phosphatidylethanolamine, phosphatidylglycerol, phosphatidylinositol, glycophospholipids, phospholipids, a glycolipid and lipids. Whole-cell hydrolysates contain
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<emphasis id="B92AE912222CFFA53FF1FCAEFE96FCDC" box="[219,274,835,858]" italics="true" pageId="9" pageNumber="645">meso</emphasis>
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-A
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pm, glucose, mannose, madurose and ribose, and a trace of galactose. The major fatty acids are C
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<subScript id="17DA3745222CFFA53FA1FC62FF23FC1B" attach="left" box="[139,167,911,925]" fontSize="6" pageId="9" pageNumber="645">16:0</subScript>
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, iso-C
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<subScript id="17DA3745222CFFA53FDBFC62FE88FC1B" attach="left" box="[241,268,911,925]" fontSize="6" pageId="9" pageNumber="645">16:0</subScript>
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and C
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<subScript id="17DA3745222CFFA53E72FC62FEF7FC1B" attach="left" box="[344,371,911,925]" fontSize="6" pageId="9" pageNumber="645">17:0</subScript>
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10-methyl. The DNA G+C content of strains KC201
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<superScript id="7C2B9848222CFFA53E07FC70FEB3FC2D" attach="left" box="[301,311,925,939]" fontSize="6" pageId="9" pageNumber="645">T</superScript>
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and KC401 is 70.6 mol% and the genome sizes 9.16 and 9.79 Mbp, respectively.
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</paragraph>
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<subSubSection id="C344668B222CFFA53F53FC01FD67FB18" pageId="9" pageNumber="645" type="materials_examined">
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<paragraph id="8BE13500222CFFA53F53FC01FD67FB18" blockId="9.[121,760,1001,1183]" pageId="9" pageNumber="645">
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<materialsCitation id="3B363F5D222CFFA53F53FC01FD5BFB18" ID-GBIF-Occurrence="2597464796" collectionCode="T, EMBL, DDBJ, MG, SMJZ" country="Turkmenistan" location="Karakum Desert" municipality="The GenBank" pageId="9" pageNumber="645" specimenCode="KC201T" specimenCount="1" typeStatus="type">
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The
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<typeStatus id="54E58BA2222CFFA53F90FC01FF6DFB82" box="[186,233,1004,1028]" pageId="9" pageNumber="645">type</typeStatus>
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strain,
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<specimenCode id="DBF89D7B222CFFA53E74FC01FE36FC71" box="[350,434,1001,1028]" pageId="9" pageNumber="645">
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KC201
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<superScript id="7C2B9848222CFFA53E82FC04FE36FC71" attach="left" box="[424,434,1001,1015]" fontSize="6" pageId="9" pageNumber="645">T</superScript>
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</specimenCode>
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(=CGMCC 4.7339
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<superScript id="7C2B9848222CFFA53D8FFC04FD2BFC71" attach="none" box="[677,687,1001,1015]" fontSize="6" pageId="9" pageNumber="645">T</superScript>
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=DSM 102917
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<superScript id="7C2B9848222CFFA53FEFFBE5FF4BFB90" attach="none" box="[197,207,1032,1046]" fontSize="6" pageId="9" pageNumber="645">T</superScript>
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=KCTC 39781
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<superScript id="7C2B9848222CFFA53E4CFBE5FEF4FB90" attach="none" box="[358,368,1032,1046]" fontSize="6" pageId="9" pageNumber="645">T</superScript>
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), was isolated from desert soil sample collected from the
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<location id="8E8163DB222CFFA53E7DFBC7FD97FBC7" LSID="urn:lsid:plazi:treatment:03F78416222DFFA53C16FA72FD67FB18:8E8163DB222CFFA53E7DFBC7FD97FBC7" box="[343,531,1066,1090]" country="Turkmenistan" municipality="The GenBank" name="Karakum Desert" pageId="9" pageNumber="645">Karakum Desert</location>
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,
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<collectingCountry id="F3497590222CFFA53D0EFBC7FD44FBC4" box="[548,704,1066,1090]" name="Turkmenistan" pageId="9" pageNumber="645">Turkmenistan</collectingCountry>
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. The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain KC201
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<superScript id="7C2B9848222CFFA53E97FB88FE43FBF5" attach="left" box="[445,455,1125,1139]" fontSize="6" pageId="9" pageNumber="645">T</superScript>
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is
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<accessionNumber id="940DA8E3222CFFA53EC8FB8AFDDEFBF9" box="[482,602,1127,1151]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/MG770626" pageId="9" pageNumber="645">MG770626</accessionNumber>
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and that of the draħ genome sequence accession number SMJZ00000000
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</materialsCitation>
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.
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</paragraph>
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</subSubSection>
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</treatment>
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</document> |