163 lines
15 KiB
XML
163 lines
15 KiB
XML
<document id="3D75B4DFBC266C623F0B3D00B12F69B0" ID-DOI="10.1099/ijsem.0.003808" ID-GBIF-Dataset="e70e39cf-ffb6-4178-989c-6a42a3c0c3bf" ID-ISSN="1466-5034" ID-Zenodo-Dep="3745026" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_requiresApprovalFor="existingObjects,plazi" IM.taxonomicNames_approvedBy="felipe" checkinTime="1586370000602" checkinUser="felipe" docAuthor="Saygin, Hayrettin, Nouioui, Imen, Ay, Hilal, Guven, Kiymet, Cetin, Demet, Klenk, Hans-Peter, Goodfellow, Michael & Sahin, Nevzat" docDate="2020" docId="03F78416222CFFA53F53FB0CFBCEFB8D" docLanguage="en" docName="IntJouSysEvoMicro.70.636-647.pdf.imf" docOrigin="International Journal of Systematic and Evolutionary Microbiology 70 (1)" docStyle="DocumentStyle:C64F0A4F4C66F6FC2AD4ED89351C6242.3:IntJSystEvolMicrobiol.2017-.journal_article" docStyleId="C64F0A4F4C66F6FC2AD4ED89351C6242" docStyleName="IntJSystEvolMicrobiol.2017-.journal_article" docStyleVersion="3" docTitle="Nonomuraea mesophila Saygin, Nouioui, Ay, Guven, Cetin, Klenk, Goodfellow & Sahin, 2020, SP. NOV." docType="treatment" docVersion="9" lastPageNumber="645" masterDocId="FFCEFC6E2225FFAC3F2AFFEDFF84FF86" masterDocTitle="Polyphasic classification of Nonomuraea strains isolated from the Karakum Desert and description of Nonomuraea deserti sp. nov., Nonomuraea diastatica sp. nov., Nonomuraea longispora sp. nov. and Nonomuraea mesophila sp. nov." masterLastPageNumber="647" masterPageNumber="636" pageNumber="645" updateTime="1698736564375" updateUser="plazi" zenodo-license-document="CC-BY-4.0">
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<mods:title id="CD4CEEEABCB7B2410E8EEBEA4A5FDDA6">Polyphasic classification of Nonomuraea strains isolated from the Karakum Desert and description of Nonomuraea deserti sp. nov., Nonomuraea diastatica sp. nov., Nonomuraea longispora sp. nov. and Nonomuraea mesophila sp. nov.</mods:title>
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<mods:namePart id="00F41ED2AF54BAC4A52C417C3AC946BF">Saygin, Hayrettin</mods:namePart>
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<mods:namePart id="66CA0960C1B53CA5C506467FDEF607A1">Nouioui, Imen</mods:namePart>
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<mods:roleTerm id="4380E6F3C4F34DF53A54855F814BC916">Author</mods:roleTerm>
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<mods:namePart id="17AA4880FA6E912731776CB2EB9C7D0F">Ay, Hilal</mods:namePart>
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<mods:namePart id="41C2A18FB597CE5D6C6434B54E665756">Guven, Kiymet</mods:namePart>
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<mods:roleTerm id="1649478D30FA1A942009611C28470EC0">Author</mods:roleTerm>
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<mods:namePart id="2437E8BB8188DE5A828DA589DC4EB29A">Cetin, Demet</mods:namePart>
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<mods:roleTerm id="15000613DABABC10681A3C0BBFECD914">Author</mods:roleTerm>
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<mods:namePart id="27D23D6CE0901767C4D4AD1234F9C02E">Klenk, Hans-Peter</mods:namePart>
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<mods:namePart id="94A81F9C6FB0D531EE89E99A5B0D80E1">Goodfellow, Michael</mods:namePart>
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<mods:namePart id="64C8DE41F25592FE38AE5C5281911053">Sahin, Nevzat</mods:namePart>
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<mods:typeOfResource id="C503A63CF45A2B39DC97E680A9162A14">text</mods:typeOfResource>
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<mods:title id="B3E0DEACC31506DDDA4B84D58E410146">International Journal of Systematic and Evolutionary Microbiology</mods:title>
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<mods:part id="3326BD280CCDF35B02CBC3F4B6BD6923">
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<mods:date id="62570326097707061805833805CC8B9D">2020</mods:date>
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<mods:number id="4BEA3CEA2963BDD975AE65A8D0EB4AEF">2020-02-03</mods:number>
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<mods:number id="8408DD90868AACF8664688824313342E">70</mods:number>
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<mods:start id="6600B0E1F8148852E7C18721C4EE6B18">636</mods:start>
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<mods:classification id="FD2C4615BA398C6A463962FD08DB426C">journal article</mods:classification>
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<mods:identifier id="59FBFCF4E20AB0540F04B106D47A8D22" type="DOI">10.1099/ijsem.0.003808</mods:identifier>
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<mods:identifier id="CAAC3ABBD29704810B7438B05951D38A" type="GBIF-Dataset">e70e39cf-ffb6-4178-989c-6a42a3c0c3bf</mods:identifier>
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<mods:identifier id="EF770E172FE7D678D5B65DF0F4EA94D2" type="ISSN">1466-5034</mods:identifier>
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<mods:identifier id="99CA3C409D977CC2A60EF9B508401AD0" type="Zenodo-Dep">3745026</mods:identifier>
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<treatment id="03F78416222CFFA53F53FB0CFBCEFB8D" ID-DOI="http://doi.org/10.5281/zenodo.3809597" ID-GBIF-Taxon="163540095" ID-Zenodo-Dep="3809597" LSID="urn:lsid:plazi:treatment:03F78416222CFFA53F53FB0CFBCEFB8D" httpUri="http://treatment.plazi.org/id/03F78416222CFFA53F53FB0CFBCEFB8D" lastPageNumber="645" pageId="9" pageNumber="645">
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<subSubSection id="C344668B222CFFA53F53FB0CFF69FAA2" pageId="9" pageNumber="645" type="nomenclature">
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<paragraph id="8BE13500222CFFA53F53FB0CFF69FAA2" blockId="9.[121,745,1249,1316]" pageId="9" pageNumber="645">
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<heading id="D0A9826C222CFFA53F53FB0CFF69FAA2" allCaps="true" bold="true" centered="true" fontSize="12" level="2" pageId="9" pageNumber="645" reason="3">
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<emphasis id="B92AE912222CFFA53F53FB0CFF69FAA2" bold="true" pageId="9" pageNumber="645">
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DESCRIPTION OF
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<taxonomicName id="4C5E4E83222CFFA53E58FB0CFD6DFB78" box="[370,745,1249,1278]" class="Actinobacteridae" family="Streptosporangiaceae" genus="Nonomuraea" higherTaxonomySource="CoL" kingdom="Bacteria" order="Actinomycetales" pageId="9" pageNumber="645" phylum="Actinobacteria" rank="species" species="mesophila" status="sp. nov.">
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<emphasis id="B92AE912222CFFA53E58FB0CFD6DFB78" bold="true" box="[370,745,1249,1278]" italics="true" pageId="9" pageNumber="645">NONOMURAEA MESOPHILA</emphasis>
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</taxonomicName>
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<taxonomicNameLabel id="A2195469222CFFA53F53FAEAFF69FAA2" box="[121,237,1287,1316]" pageId="9" pageNumber="645">SP. NOV.</taxonomicNameLabel>
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</emphasis>
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</heading>
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</paragraph>
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<subSubSection id="C344668B222CFFA53F53FAD9FBB8FCC7" pageId="9" pageNumber="645" type="description">
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<paragraph id="8BE13500222CFFA53F53FAD9FED0FA0F" blockId="9.[121,760,1329,1417]" pageId="9" pageNumber="645">
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<taxonomicName id="4C5E4E83222CFFA53F53FAD9FEFCFACD" box="[121,376,1331,1355]" class="Actinobacteridae" family="Streptosporangiaceae" genus="Nonomuraea" higherTaxonomySource="CoL" kingdom="Bacteria" order="Actinomycetales" pageId="9" pageNumber="645" phylum="Actinobacteria" rank="species" species="mesophila">
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<emphasis id="B92AE912222CFFA53F53FAD9FEFCFACD" box="[121,376,1331,1355]" italics="true" pageId="9" pageNumber="645">Nonomuraea mesophila</emphasis>
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</taxonomicName>
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(me.so
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<emphasis id="B92AE912222CFFA53EE0FADCFE54FACD" bold="true" box="[458,464,1329,1355]" italics="true" pageId="9" pageNumber="645">′</emphasis>
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phi.la Gr. n.
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<emphasis id="B92AE912222CFFA53D77FAD9FD18FACD" box="[605,668,1332,1355]" italics="true" pageId="9" pageNumber="645">mesos</emphasis>
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middle; Gr. fem. adj.
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<emphasis id="B92AE912222CFFA53E22FABFFEC1FAEC" box="[264,325,1362,1386]" italics="true" pageId="9" pageNumber="645">philos</emphasis>
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loving; N.L. fem. adj.
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<taxonomicName id="4C5E4E83222CFFA53D10FABFFD27FAEC" box="[570,675,1362,1386]" class="Actinobacteridae" family="Streptosporangiaceae" genus="Nonomuraea" higherTaxonomySource="CoL" kingdom="Bacteria" order="Actinomycetales" pageId="9" pageNumber="645" phylum="Actinobacteria" rank="species" species="mesophila">
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<emphasis id="B92AE912222CFFA53D10FABFFD27FAEC" box="[570,675,1362,1386]" italics="true" pageId="9" pageNumber="645">mesophila</emphasis>
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</taxonomicName>
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middle temperature loving).
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</paragraph>
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Aerobic, Gram-stain-positive, non-motile actinobacterium that forms extensively branched substrate and aerial mycelia. Aerial hyphae differentiate into spore chains with smooth surfaces. Good growth occurs on ISP 2, ISP 4, modified Bennett’s and tryptic soy agar and moderate growth on Czapek’s, nutrient and ISP 5–7 agar. A range of substrate mycelial pigments are formed including cream, light brown, dark brown, reddish brown, reddish black or claret red ones. Melanoid pigments are not produced on the ISP 6 agar. Red coloured diffusible pigments are observed on modified Bennett’s agar. Grows from 20–37 °C (optimum, 28 °C), from pH 6.0–8.0 (optimum, pH 7.0) and in the presence of up to 5 % (w/v) NaCl. Hydrolyses aesculin, reduces nitrate, but does not produce H
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S, does not hydrolyse allantoin, arbutin or urea. Degrades hypoxanthine, starch and Tweens (20, 40 and 80), but not adenine, casein, chitin, gelatin, guanine, xanthine or xylan. Adonitol, D-arabinose, D-fructose, raffinose, cellobiose, D-galactose, melezitose, melibiose, dextran, D-glucose, inulin, lactose, D-maltose, D-mannitol, sucrose and D-xylose are used as sole carbon and energy sources but not D-sorbitol, D-mannose, dextrin, L-sorbose, L-arabinose, L-rhamnose, L-glutamine, myo-inositol, sodium succinate or xylitol. L-Alanine, L-arginine, L-asparagine, L-cysteine, glycine, L-hydroxyproline, α-isoleucine, L-methionine, L-phenylalanine, L-proline, L-serine, L-tyrosine and L-valine are utilized as sole nitrogen sources, but not L-histidine. The predominant menaquinones are MK-9(H
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<subScript id="17DA3745222CFFA53A41FE0CFAF7FE69" attach="left" box="[1387,1395,481,495]" fontSize="6" pageId="9" pageNumber="645">4</subScript>
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) and MK-9(H
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). The polar lipid profile include diphosphatidylglycerol, phosphatidylmonomethylethanolamine, phosphatidylethanolamine, hydroxy-phosphatidylethanolamine, dihydroxy-phosphatidylethanolamine, phosphatidylglycerol, phosphatidylinositol, two unidentified aminophospholipids, an unidentified glycophospholipid, four unidentified phospholipids and an unidentified lipid. Whole-cell hydrolysates include
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<emphasis id="B92AE912222CFFA53CA5FD21FC47FD65" box="[911,963,716,739]" italics="true" pageId="9" pageNumber="645">meso</emphasis>
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-A
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pm, glucose, mannose, madurose and ribose. The major fatty acids are C
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<subScript id="17DA3745222CFFA53B4FFD17FBFBFC8E" attach="left" box="[1125,1151,762,776]" fontSize="6" pageId="9" pageNumber="645">16:0</subScript>
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, iso-C
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<subScript id="17DA3745222CFFA53BE2FD17FB65FC8E" attach="left" box="[1224,1249,762,776]" fontSize="6" pageId="9" pageNumber="645">16:0</subScript>
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and C
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<subScript id="17DA3745222CFFA53A06FD17FAC2FC8E" attach="left" box="[1324,1350,762,776]" fontSize="6" pageId="9" pageNumber="645">17:0</subScript>
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10-methyl. The DNA G+C content of strain 6K102
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<superScript id="7C2B9848222CFFA53BF3FCE5FB67FC90" attach="left" box="[1241,1251,776,790]" fontSize="6" pageId="9" pageNumber="645">T</superScript>
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is 70.8 mol% and its genome size 10.14 Mbp.
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</paragraph>
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</subSubSection>
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<subSubSection id="C344668B222CFFA53C16FCBAFBCEFB8D" pageId="9" pageNumber="645" type="materials_examined">
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<paragraph id="8BE13500222CFFA53C16FCBAFBCEFB8D" blockId="9.[828,1466,853,1035]" pageId="9" pageNumber="645">
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<materialsCitation id="3B363F5D222CFFA53C16FCBAFBC2FB8D" ID-GBIF-Occurrence="2597464795" collectionCode="T, JCM, EMBL, DDBJ, MG, SMLD" country="Turkmenistan" location="Karakum Desert" municipality="The GenBank" pageId="9" pageNumber="645" specimenCode="6K102T" specimenCount="1" typeStatus="type">
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The
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<typeStatus id="54E58BA2222CFFA53C46FCB5FC1EFCF6" box="[876,922,856,880]" pageId="9" pageNumber="645">type</typeStatus>
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strain,
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<specimenCode id="DBF89D7B222CFFA53CC4FCBAFBB9FCE5" box="[1006,1085,853,879]" pageId="9" pageNumber="645">
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6K102
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<superScript id="7C2B9848222CFFA53B19FCB8FBB9FCE5" attach="left" box="[1075,1085,853,867]" fontSize="6" pageId="9" pageNumber="645">T</superScript>
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</specimenCode>
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(=CGMCC 4.7541
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<superScript id="7C2B9848222CFFA53A27FCB8FA93FCE5" attach="none" box="[1293,1303,853,867]" fontSize="6" pageId="9" pageNumber="645">T</superScript>
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=JCM 32916
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<superScript id="7C2B9848222CFFA53A8BFCB8FA2FFCE5" attach="none" box="[1441,1451,853,867]" fontSize="6" pageId="9" pageNumber="645">T</superScript>
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), was isolated from desert soil sample collected from the
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<location id="8E8163DB222CFFA53C16FC7BFC69FC2B" LSID="urn:lsid:plazi:treatment:03F78416222CFFA53F53FB0CFBCEFB8D:8E8163DB222CFFA53C16FC7BFC69FC2B" box="[828,1005,918,942]" country="Turkmenistan" municipality="The GenBank" name="Karakum Desert" pageId="9" pageNumber="645">Karakum Desert</location>
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,
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<collectingCountry id="F3497590222CFFA53CDFFC7BFB09FC28" box="[1013,1165,918,942]" name="Turkmenistan" pageId="9" pageNumber="645">Turkmenistan</collectingCountry>
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. The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain 6K102
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<superScript id="7C2B9848222CFFA53CABFC3FFC0FFC66" attach="left" box="[897,907,978,992]" fontSize="6" pageId="9" pageNumber="645">T</superScript>
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is
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<accessionNumber id="940DA8E3222CFFA53C80FC39FBA5FC6A" box="[938,1057,980,1004]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/MG770753" pageId="9" pageNumber="645">MG770753</accessionNumber>
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and draħ genome sequence accession number SMLD00000000
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</materialsCitation>
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.
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</paragraph>
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</subSubSection>
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</treatment>
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</document> |